NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F070319

Metagenome / Metatranscriptome Family F070319

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F070319
Family Type Metagenome / Metatranscriptome
Number of Sequences 123
Average Sequence Length 90 residues
Representative Sequence MPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPP
Number of Associated Samples 73
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 23.97 %
% of genes near scaffold ends (potentially truncated) 59.35 %
% of genes from short scaffolds (< 2000 bps) 93.50 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (56.098 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere
(16.260 % of family members)
Environment Ontology (ENVO) Unclassified
(36.585 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(73.984 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154
1JGI10216J12902_1172447312
2C688J18823_105776572
3JGI24743J22301_101616951
4C688J35102_1185329421
5C688J35102_1187091311
6C688J35102_1187271841
7C688J35102_1209716995
8Ga0007419J51692_10852471
9Ga0007429J51699_11217231
10Ga0063454_1014385091
11Ga0062593_1021396542
12Ga0063455_1003134782
13Ga0063455_1011623482
14Ga0062590_1022395432
15Ga0070690_1013263862
16Ga0068869_1019536921
17Ga0070666_107044012
18Ga0070689_1001535631
19Ga0070674_1016050861
20Ga0070663_1014256192
21Ga0068867_1002918923
22Ga0068853_1003503174
23Ga0070665_1026474361
24Ga0068864_1021775371
25Ga0068862_1003281241
26Ga0070717_112057411
27Ga0075365_100390126
28Ga0075365_103696252
29Ga0075367_102956604
30Ga0075367_105796541
31Ga0075367_106110342
32Ga0105245_119569271
33Ga0105247_1001071111
34Ga0105247_108983571
35Ga0099792_109324191
36Ga0111538_128263471
37Ga0105249_112438291
38Ga0105239_129873112
39Ga0134124_123246841
40Ga0138505_1000073551
41Ga0105246_102550232
42Ga0105246_107888642
43Ga0105246_109328591
44Ga0150985_1023303551
45Ga0150985_1036141944
46Ga0150985_1040003421
47Ga0150985_1049398941
48Ga0150985_1049890871
49Ga0150985_1054285982
50Ga0150985_1054611441
51Ga0150985_1080291232
52Ga0150985_1101354851
53Ga0150985_1112857394
54Ga0150985_1134762931
55Ga0150985_1145312471
56Ga0150985_1160958202
57Ga0150985_1161827701
58Ga0150985_1178463911
59Ga0150985_1196098241
60Ga0150985_1229541511
61Ga0150985_1230254162
62Ga0150984_1017845442
63Ga0150984_1022674791
64Ga0150984_1023074321
65Ga0150984_1032602331
66Ga0150984_1043203613
67Ga0150984_1051674421
68Ga0150984_1059890821
69Ga0150984_1068815712
70Ga0150984_1087263061
71Ga0150984_1095337122
72Ga0150984_1101187782
73Ga0150984_1105523093
74Ga0150984_1109207332
75Ga0150984_1139805671
76Ga0150984_1170865781
77Ga0150984_1171020762
78Ga0150984_1221830141
79Ga0150984_1236291312
80Ga0162650_1000915562
81Ga0164303_110285521
82Ga0164307_101496432
83Ga0164307_116971231
84Ga0157374_101759211
85Ga0157374_118086762
86Ga0157378_105553942
87Ga0163162_102548035
88Ga0163163_106128601
89Ga0157380_103923573
90Ga0157376_104766243
91Ga0132257_1039376371
92Ga0163161_117600331
93Ga0184624_100580973
94Ga0184640_100361542
95Ga0184639_105125672
96Ga0190270_103555433
97Ga0190270_107221082
98Ga0190270_107742251
99Ga0190270_113009311
100Ga0190274_113365091
101Ga0210380_105162172
102Ga0207680_105705882
103Ga0207669_109617481
104Ga0207712_106437521
105Ga0207668_108565972
106Ga0207639_112684271
107Ga0207678_113538102
108Ga0207708_106957851
109Ga0207648_101818044
110Ga0207676_126042122
111Ga0209488_109449442
112Ga0268264_116618391
113Ga0307322_101926491
114Ga0307317_100454611
115Ga0307315_102331631
116Ga0307316_101041763
117Ga0307323_101658361
118Ga0307305_104373441
119Ga0307294_103435031
120Ga0307302_106317071
121Ga0307286_101367741
122Ga0307304_100652532
123Ga0307304_105364331
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 46.85%    β-sheet: 0.00%    Coil/Unstructured: 53.15%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

1020304050607080MPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.68
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
43.9%56.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Soil
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Endosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
15.4%6.5%16.3%3.3%4.1%3.3%3.3%3.3%3.3%14.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11724473123300000956SoilFISGHAFDFDKMPIRQYLDGERFDPETIRLLGVAFEFAIQALHNWGVDNPPRAAIARAIIGFAKAGERDPERLCDLALERSVKPTIPDANPLPTGGPQ*
C688J18823_1057765723300001686SoilGKMPIRQYLDGESFDPETTRFLGIAFEFAIQALHNWGEDDPPREAIARAIIGYAKAGERDPERLCDLAVEAYSKLIITVSNPLRPPASPQARRGS*
JGI24743J22301_1016169513300001991Corn, Switchgrass And Miscanthus RhizosphereRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
C688J35102_11853294213300002568SoilETTRLLGIAFETAIQALHNWGVLDPPREAIARAIIGFAKAGERDPERLCDLALEACSKPIISDPSPLPPHASPQAQPDS*
C688J35102_11870913113300002568SoilMPLRQYLNGERFDPETTRLMGVAFETALQALHYLEVIDPPREAIARAIIGFAKAGEGDPERLCDLALEACAKPIISDSIPFPLHASPPAQPDS*
C688J35102_11872718413300002568SoilMPIRLYLDGERFDSETTRLLGIAFETAIQALHNWGVDDPPRDAIARVIIGFAKAGERDPERLCDLALEACAKPIISDPTPLPPHAAPPAQPDS*
C688J35102_12097169953300002568SoilMPIRQYRDGERFDPETTRLLGIAFEFAIQALHNWGVLDPRREAIAGAIIGFARAGERDPERLCDLALEACSKPIISDPNPLPPYASPPVLPDS*
Ga0007419J51692_108524713300003571Avena Fatua RhizosphereRMCRVALSPVGSDRACYREDGRMPIRQYLDGERFDPETTRLLGVAFEFAIQALHNWGVDDPPREAIARAIIGSAKAGERDPERLCDLAVEAFSKLLLTDPSPLPLHASPPVASGFLNFNQSGERPDR*
Ga0007429J51699_112172313300003579Avena Fatua RhizosphereGKMPIRQYLDGEKFDPETTRLLGLAFEFTIQALHNWGVDDPPREAIARAIISYAKAGERDPERLCDLAVEACSKPIITDPKPLPHHAAQPDS*
Ga0063454_10143850913300004081SoilMPIRQYLDGERFDPETTRFLGIAFEFAIQALHNWGEDDPPREAIARAIIGYAKAGERDPERLCDLAVEAYSKLIITVPNPLRPRASPQARRGSST*
Ga0062593_10213965423300004114SoilMPIRPYLDGERFDVETTRLMGIAFETAIQALRNWGVLDPPREEIARAIIALAKGGERDADRLCDAALKACQPAIVSDPNPLPPLA*
Ga0063455_10031347823300004153SoilMPIRQYLEGERFDPETTRLLGIAFETAIQALHNSGVDDPPREAIARAIIGFAKAGEGDPERLCDLALEACSNLINSDPSPLPPHASPPAQPGS*
Ga0063455_10116234823300004153SoilMPIRQYLDGERFDPETTRFLGIAFEFAIQALHNWGEDDPPREAIARAIIGYAKAGERDPERLCDLAVEAYSKLIITV
Ga0062590_10223954323300004157SoilMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKI
Ga0070690_10132638623300005330Switchgrass RhizosphereLDGERFDPETTRLLGIAFEFAIQALHSWGVDDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0068869_10195369213300005334Miscanthus RhizosphereYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPRDTIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0070666_1070440123300005335Switchgrass RhizosphereMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0070689_10015356313300005340Switchgrass RhizosphereFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0070674_10160508613300005356Miscanthus RhizosphereDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0070663_10142561923300005455Corn RhizosphereMAIRPYLEGQRFDAETTRRMGLAFETAIQARRNWGELDPPREAIAKAIIDLAKGGERDPERLCDGALKACPAVIVSDPSPPPPLV
Ga0068867_10029189233300005459Miscanthus RhizosphereRFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0068853_10035031743300005539Corn RhizosphereGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0070665_10264743613300005548Switchgrass RhizosphereMPIRPYLEGQRFDAETTRLMGLAFETAIQARRNWGELDPPREAIAKAIIDLAKGGERDPERLCDGALKACPAVIVSDPSPPPPLVS*
Ga0068864_10217753713300005618Switchgrass RhizosphereLDGHRFPPETIRLMGIAFEMAIQALHNRDVVDPPREAIARTILGFAKAGDPERLCDLALEACAKPIISDPSPLPPHASPPAQPDS*
Ga0068862_10032812413300005844Switchgrass RhizosphereYLDGERFDPETTRLLGIAFEFAIQALHNWGVYDPPRETIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0070717_1120574113300006028Corn, Switchgrass And Miscanthus RhizosphereMPIRQYLHGERFDPETTRLLGIAFEFAIQALHNWGVDDAPGEAIARAIISFAKAGERDPERLCDVAVEAYSKLTAPNPPLPRAAQPAPPGS*
Ga0075365_1003901263300006038Populus EndosphereEGQRFDAETTRRMGLAFETAIQARRNWGELDPPREAIAKAIIDLAKGGERDPERLCDGALKACPAVIVSDPSPPPPLVS*
Ga0075365_1036962523300006038Populus EndosphereMPIRQFLDGERFDPETTRLLGIAFETAIQALRSWGVDHPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISGPSPLPPHASPPAQPDS*
Ga0075367_1029566043300006178Populus EndosphereMRPYLEGQRFDAETTRLLGLAFETAIQALHTWGDLDPPREAIAKAIIELAKGGERDPERLCDGALKACQGAIVSDPSPPPPLVSRQE
Ga0075367_1057965413300006178Populus EndosphereMAIRPYLEGQRFDAETTRRMGLAFETAIQARRNWGELDPPREAIAKAIIDLAKGGERDPERLCDGALKACPAVIVSDPSPPPP
Ga0075367_1061103423300006178Populus EndosphereMPIRQFLDGERFDPETTRLLGIAFETAIQALRSWGVEHPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISGPSPLPPHASPPAQPDS*
Ga0105245_1195692713300009098Miscanthus RhizosphereKRQTVMPLRQYLDGHKFDFETTRLMGIAFETAIQALHNWGVLDPPREAIARAIIGFAKAGERDPERLCDLALETCSRPIVSDPNPLPSHASPPVLPDF*
Ga0105247_10010711113300009101Switchgrass RhizosphereMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSR
Ga0105247_1089835713300009101Switchgrass RhizosphereMPIRQYLDGERFDPETTRLLGIAFETAIQALHWAVDDPPREAIAGAIIGFAKAGERDPERLCDLALATCSKPIISDPSP
Ga0099792_1093241913300009143Vadose Zone SoilMPIRQYLDGERFDPETTRLLGIAFETAIQSLHNWGVLDPPREAIARAIIGFAKAGEREPERLCDLALEACSKPII
Ga0111538_1282634713300009156Populus RhizosphereEPILGPVRAAVFDMPIRQYLDGERFDPETTRLLGIAFETAIQALHNWGVDDPPREAIARAIIDFAKAGERDPERLCDLALEACSKPIISDPSPRSPRASPPAQPDS*
Ga0105249_1124382913300009553Switchgrass RhizosphereMPIRNYLDGERFDPETTRLLGLAFETAIQALHNWGVDHPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIITDPNPFSHHAVQPDS*
Ga0105239_1298731123300010375Corn RhizosphereWLAAVFDHMPIRQYLDGERFDPETTRLLGIAFETAIQALHHWGVVDPSREAIARAIIGFAKAGERDPERLCDLALEACSKPIISDPSPLPPQASPPAQLDS*
Ga0134124_1232468413300010397Terrestrial SoilKMSIRQYLDGETLDRETTRGLAFEFTVQALHNWGVDDPPREAIARAIIGHAKAGERDPERLCDLALEACSKPIISDPSPLPPQASPPAQLDS*
Ga0138505_10000735513300010999SoilMPIRQYLDGERFDPETTRLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPQTSRPDS*
Ga0105246_1025502323300011119Miscanthus RhizosphereMAIRPYLEGQRFDAETTRRMGLAFETAIQARRNWGELDPPREAIAKAIIDLAKGGERDPERLCDGALKACPAVIVSDPSPPPPLVS*
Ga0105246_1078886423300011119Miscanthus RhizosphereMPIRQYLDGERFDPETTRLLGIAFETAVQALHHWGVVDAPREAIARAIIGFAKAGERDPERLCDLALEACSKPIISDPSPLPPQGSP
Ga0105246_1093285913300011119Miscanthus RhizosphereMPIREYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKPIISDPNPPPPLVSRREPLDF*
Ga0150985_10233035513300012212Avena Fatua RhizosphereDLVFGWRRPEPATGKDGKMPIRQYLNGERFDPETTRLLGVAFEFTVQALHNWGVDDPPREAIARAIIGDAKAGERDPERLCDLAVEACFKPIITGPRPLPPHDSPLAPPDS*
Ga0150985_10361419443300012212Avena Fatua RhizosphereMPDAFLSGCVEPEPASGKDGKMPIRQYLDGERFDPETTRLLGLAFEFTIQALHNWGVDDPPREAIARAIISYAKAGERDPERLCDLAVEACSKPIITDPKPLPHHAAQPDS*
Ga0150985_10400034213300012212Avena Fatua RhizosphereEKFDPETTRHLGLAFEFTIQALHNWGVDDPPREAIARAIISYAKAGERDPERLCDLAVEACSKPIITDRKPLPHHAAQPDS*
Ga0150985_10493989413300012212Avena Fatua RhizosphereAVFDMPIRHYLDGERFVPETTRLLGIAFEYAIQALHNCGVTDPPREAIARAIIGFARAGERDPERLCDFAVEACAVIGDPSPLPPHAAPPAQPDS*
Ga0150985_10498908713300012212Avena Fatua RhizosphereLDGERVDPETTRLMGIAFETAIQALRNWEVLDPPREAIARAIIGFAKAGERDPERLCDLALEAWSKPIVSDPNPLPPHASPPVLPDS*
Ga0150985_10542859823300012212Avena Fatua RhizosphereMPLRQFLDGYKFDFETTRLMGIAFETAIQALHNWGVLDPPREAIARAIIGFAKAGERDPEHLCDLALEACSKPIVSDPNPLPPHSSPPVLPDS*
Ga0150985_10546114413300012212Avena Fatua RhizosphereMPIRQYLHGERFDPETTRLLGIAFEFAIQALHNWGVDDAPREAIARAIISFAKAGERDPERLCDVAVEAYSKLTAPNPPLPRAAQPAPPGS*
Ga0150985_10802912323300012212Avena Fatua RhizosphereETTRLLGIAFETAIQALHNWGVDDPPREAIARAIVGFGKAGERDPERLCDLALEACSKPIITDPSPLPPHALPRAPPGS*
Ga0150985_11013548513300012212Avena Fatua RhizosphereISTMPIRQYLDGERFDPETTRLLGLAFEFTVQALHNWGIDDPPREAIARAIIGHAKAGERDPERLCDLAVEACSKPIITDPHPLSHHAAQPDS*
Ga0150985_11128573943300012212Avena Fatua RhizosphereMPIRQYLDGEERFDPETTRLLGIALEFAIQALHNWGVVEPPREAIARAIIGFARAGEGDPERLCDLAVEACSKLINTNPSPLPPPRCTPAAAGFLNFSQSGE*
Ga0150985_11347629313300012212Avena Fatua RhizosphereMPIRQYLNGERFDPETTRLLGLAFETAIQALHNGGVDDPPREGIARTIIGFAKGGTRDPERLCELALEVAPNR*
Ga0150985_11453124713300012212Avena Fatua RhizosphereMPIRQYLDGERFDPETTRLLGIAFEFTIQALHNWGIDDPPREAIARAIISYAKAGERDPERLCDLAVEACSKPIITDPNPLPHHAAQPDS*
Ga0150985_11609582023300012212Avena Fatua RhizosphereGRKMPIRQYLDGERFDPETTRLLGIAFEFTVQALHNWGAGDPPREAIAAAIIGHAKAGERDPERLCDLAVEACSKLLITTPNPPRPQVTLEAYQSS*
Ga0150985_11618277013300012212Avena Fatua RhizosphereMPIRQYLDGERFDPETTRLLGVAFEFAIQALHNWGVDDPPREAIARAIIGSAKAGERDPERLCDLAVEAFSKLLLTDPSPLPLHASPPVASGFLNFNQSGERPDR*
Ga0150985_11784639113300012212Avena Fatua RhizosphereMPIRNYLDGERERFDPETTRLLGIAFETAIQALHNWGVDDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPQTSPPVS*
Ga0150985_11960982413300012212Avena Fatua RhizosphereRFEPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACSKPIVSDPNILPPHASPPVLPDT*
Ga0150985_12295415113300012212Avena Fatua RhizosphereRRARTATGKDGKMPIRQYLNGERFDPETTRLLGLAFEFTVQALHNWGVDDPPREAIARAIISDAKAGERDPERLCDLAVKACFKPIITDPNPLSHHAAQPDS*
Ga0150985_12302541623300012212Avena Fatua RhizospherePIRQYLDGERFDPETTRLLGLAFEFTVQALHNWGIDEPPREAIVRAIIGHAKAGERDPERLCDLAVEACSKPIITDANPLSHHAAQPDSSSHCN*
Ga0150984_10178454423300012469Avena Fatua RhizosphereMPIRHYLDGERFDPETTRLLGIAFETAIQALHNWGVDDPPREAIARAIIGFAKAGERDPERLCDLALEAFSKPIISDPSPLPPHASPPAQPDS*
Ga0150984_10226747913300012469Avena Fatua RhizosphereMPIRQYLDGERFDPETTRLLGIALEFAIQALHNWGVVEPPREAIARAIIGFARAGEGDPERLCDLAVEACSKLINTNPSPLPPPPRCTPGAAGFLNFSQSGE*
Ga0150984_10230743213300012469Avena Fatua RhizosphereSFDPETTRLLGIAFETGVKALHTSGVLDPPREAIARVIIGFAKGGERDSERLCDLALETCSNLIISDPSPLPPHASPPVLPDS*
Ga0150984_10326023313300012469Avena Fatua RhizosphereMPLRQYLDGERFDPETTRLLGIAFETAIQALHNGGVDDPPREAIAKAVIGFAKSGERDPERLCDLALEACSKPIISDPSPLPPHASPPAQ
Ga0150984_10432036133300012469Avena Fatua RhizosphereVFDMPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGVTDPPREAIARAIIGFARAGERDPERLCDFAVEACAVIGDPSPLPPHAAPPAQPDS*
Ga0150984_10516744213300012469Avena Fatua RhizosphereVEGALQFDTMPIRQYLAGERFDPETTRLLGIAFEFTTQALHNWGVYDPPRETIARAIIGFARAGERDPERLCDLAVEACSKVIITDRTPLPPHATQPDS*
Ga0150984_10598908213300012469Avena Fatua RhizosphereMPIRNYLDGERFDPETTRLLGIVFETAIQALHNRGVADPPREAIARAIIGFAKAGERDPERLCDLALEACSKPIISDPSPLPPHASP
Ga0150984_10688157123300012469Avena Fatua RhizosphereMAIRLYLDGERFDPETTRLLGLVFETAIQATHNWDVADSPREAIARALIGFAKAGERDPDRLCDLALAACSNP*
Ga0150984_10872630613300012469Avena Fatua RhizosphereRPYLDGQRFDAETTRLMGLAFETAIQARRNWGELEPPREAIAKAIIDLAKGGERDPERLCDAALKACQAAIVSDPSSPLPLVSRQEPLDL*
Ga0150984_10953371223300012469Avena Fatua RhizosphereMPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGVLDPPREAIAEAIIGFARAGERDPERLCDLALEAWSKPIVRDPQSSRFNASSKSGEFS*
Ga0150984_11011877823300012469Avena Fatua RhizosphereMPIRQYLNGERFDPETTRLLGVAFEFTVQALHNWGVDDPPREAIARAIIGDAKAGERDPERLCDLAVEACFKPIITGPRPLPPHDSPLAPPDS*
Ga0150984_11055230933300012469Avena Fatua RhizosphereDPETTRLLGLAFETAIQALHNWGVVNPAREAIAKAIIGLAKAGERDPERLCDLALEASFAPIISDPNPLPPERCTAGASGFLNFSQSGERPDR*
Ga0150984_11092073323300012469Avena Fatua RhizosphereMPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGVIDPPREAIARAIIGFARAGERDPERLCDFAVEACSKSIVGDPGPLPPHAAAPVLPD*
Ga0150984_11398056713300012469Avena Fatua RhizosphereMPIRQYLDGEKFDPETTRLLGIAFETAIQALHNWGVVDPPREAIARAIIGFAKSGERDPDRICDHALEACSKPIISDPTPLPPHASPPVLPDG*
Ga0150984_11708657813300012469Avena Fatua RhizospherePARYEFDMPIRQYLDGERFDPETTRLLGIAFETAIQALHSWGVDDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPTISDPSALPPYTSPLAQPDS*
Ga0150984_11710207623300012469Avena Fatua RhizosphereMPIRQYLDGERFDPETTRLLGLAFEFTIQALHNWGVDDPPREAIARAIISYAKAGERDPERLCDLAVEACSKPIITDPKPLPHHAAQPDS*
Ga0150984_12218301413300012469Avena Fatua RhizosphereAFLSGCVEFEPATVKDGKMPIRQYLDGEKFDPETTRHLGLAFEFTIQALHNWGVDDPPREAIARAIISYAKAGERDPERLCDLAVEACSKPIITDRKPLPHHAAQPDS*
Ga0150984_12362913123300012469Avena Fatua RhizosphereDGERFDPETTRLLGLAFEFTVQALHNWGIDEPPREAIVRAIIGHAKAGERDPERLCDLAVEACSKPIITDANPLSHHAAQPDSSSHCN*
Ga0162650_10009155623300012939SoilMPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPP
Ga0164303_1102855213300012957SoilMPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGGGDPPREAIAKAIIGYAKAGERDPERLCDLAVEACSNLIITDPSALPSHAAPPVLPD*
Ga0164307_1014964323300012987SoilMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNRGVVDPPRDAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0164307_1169712313300012987SoilMPIRQYLDGERFDPETMRLLGIAFEFAIQALHNWGGGDPPREAIAKAIIGYAKAGERDPERLCDLAVEACSNLIITDPSALPS
Ga0157374_1017592113300013296Miscanthus RhizosphereMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRRAPLDF*
Ga0157374_1180867623300013296Miscanthus RhizosphereMPIRQYLHGERFDPETTRLLGIAFEFAIQALHNWGVDDPPREAIARAIIGFAKGGERDPERLCDLALEACSKPLVTDPSPLPLALHCRGSRIIELEPV*
Ga0157378_1055539423300013297Miscanthus RhizosphereMPIRQYLDGERFDPETTRLLGVAFEFAIQALHNWGVDDPPREAIARAIIGYAKAGERDPELLCDLAVEECSKLTITDPRPLPPHAAQPD*
Ga0163162_1025480353300013306Switchgrass RhizosphereMPIRPYLEGQSFDAETTRLMGIAFETAIEALRNRGVRDPPREEIARAIIDLAKGGERDADRLCDGALKACQPAIISDP
Ga0163163_1061286013300014325Switchgrass RhizosphereRFDPETTRFLGIAFEFAIQALHNWGEDDPPREAIARAIIGYAKAGERDPERLCDLAVEAYSKLIITVPNPLRPPASPQARRGS*
Ga0157380_1039235733300014326Switchgrass RhizosphereMPIRQYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRRE
Ga0157376_1047662433300014969Miscanthus RhizosphereMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAFIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF*
Ga0132257_10393763713300015373Arabidopsis RhizosphereMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLV
Ga0163161_1176003313300017792Switchgrass RhizosphereMPIRQYLDGERFDPETTRLLGVAFEFVIQALHNWGVDDPPREAIARAIIGYAKAGERDPELLCDLAVEECSKLTITDPRPLPPHAAPPV
Ga0184624_1005809733300018073Groundwater SedimentMPIRQYLDGERFDPETTRLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDRSPLPPQTSPPDS
Ga0184640_1003615423300018074Groundwater SedimentMPIRQYLDGERLDPETTRLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDRSPLPPQTSPPDS
Ga0184639_1051256723300018082Groundwater SedimentMPIRQYLDGERLDPETTRLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISD
Ga0190270_1035554333300018469SoilMPIRPYLDGQRFDAETTRLMGLAFETAIQALRNRGVLDPPREAIAKAVIDHAKGGERDPERLCDAALEACQAAIVSDPSSH
Ga0190270_1072210823300018469SoilMPIRVYLDGHRFPPETIRLMGIAFEMAIQALHNRDVVDPPREAIARAIIDFAKAGERDPERLCDLALESCAKSIISDPSPLPPHASPPAQPDS
Ga0190270_1077422513300018469SoilPSEPYCGHGPAAVFDMPIRHYLDGERFDPETTRLLGIAFETAIQALHNWGADDPPREAIARAIIGFAKAGERDLERLCDLALEACSKPIISDPSPLPPHASPPAQPDS
Ga0190270_1130093113300018469SoilPSEPYCGHGPAAVFDMPIRHYLDGERFDPETTRLLGIAFETAIQALHNWGVDDPPREAIARAIIGFAKAGERDPERLCDLALEACSKPIISDPSPLPPHASPPVLPDS
Ga0190274_1133650913300018476SoilMPIRQYLDGERFDPETIRLLGVAFEFAIQALHNWGVDNPPRAAIARAIIGFAKAGERDPERLCDLALERSVKPTIPDANPLPTGGPQ
Ga0210380_1051621723300021082Groundwater SedimentFDPETTRLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPQTSRPDS
Ga0207680_1057058823300025903Switchgrass RhizosphereMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF
Ga0207669_1096174813300025937Miscanthus RhizosphereMPIRPYLDGQRFDAETTRLMGIAFETAIEALRNRGVRDPPREEIARAIIDLAKGGERDADRLCDGALKACQPAIVSDPNPLPPLA
Ga0207712_1064375213300025961Switchgrass RhizosphereMPIRNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPRDTIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF
Ga0207668_1085659723300025972Switchgrass RhizosphereMPIRPYLEGQSFDAETTRLMGIAFETAIEALRNRGVRDPPREEIARAIIDLAKGGERDADRLCDGALKACQPAIISDPSLPPPPDSP
Ga0207639_1126842713300026041Corn RhizosphereNYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF
Ga0207678_1135381023300026067Corn RhizosphereMAIRPYLEGQRFDAETTRRMGLAFETAIQARRNWGELDPPREAIAKAIIDLAKGGERDPERLCDGALKACPAVIVSDPS
Ga0207708_1069578513300026075Corn, Switchgrass And Miscanthus RhizosphereMPIRQYRDGERFDPETTRLLGIAFETAIQALHHWGVVDPPREAIARAIIDFAKAGERDPERLCDLAVEACSKPIISDPNPPPPLVSRRE
Ga0207648_1018180443300026089Miscanthus RhizosphereRFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKVKITDPSPPPPLVSRREPLDF
Ga0207676_1260421223300026095Switchgrass RhizosphereMPIRAYLDGHRFPPETIRLMGIAFEMAIQALHNRDVVDPPREAIARTILGFAKAGDPERLCDLALEACAKPIISD
Ga0209488_1094494423300027903Vadose Zone SoilMPIRQYLDGERFDPETTRLLGIAFETAIQSLHNWRVLDPPREAIARAIIGFAKAGEREPERLCDLALEACSKPII
Ga0268264_1166183913300028381Switchgrass RhizosphereMPIREYLDGERFDPETTRLLGIAFEFAIQALHNWGVVDPPREAIARAIIGFARAGERDPERLCDLAVEACSKPIISDPNPPPPLVSRRE
Ga0307322_1019264913300028710SoilDSETVRLLGIAFEMALQALRSWGVFDPPREAIAKALIDLAKGGERDPERLCHGALKACQRAIISDSNSLPPFTSPPVLPDS
Ga0307317_1004546113300028720SoilMPIGQYLDGEQFDPETARLLGIAFEFAIQALHNWGVVDPPRDAIARAIIGFARAGERDPERLCDLAVEACAKPVISNPSPLPPDAAPPAHADS
Ga0307315_1023316313300028721SoilETTCLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPQTSRPDS
Ga0307316_1010417633300028755SoilMPIRPYLDSHRLDPETVRLLGIAFETALQALRSWGVFDPPREAVAKALIDLAKGGERDPERLCDEALKACQGAI
Ga0307323_1016583613300028787SoilMPIGQYLDGEQFDPETARLLGIAFEFAIQALHNWGVVDPPRDAIARAIIGFARAGERDPERLCDLAVEACAKPVISNPSPLPP
Ga0307305_1043734413300028807SoilMPIRPYLDGQRFDAETTRLMGIAFETAIQPLHNRGVIDPPREAIARAIIGSAKAGERDPERLCDLALEACAKPIITDPSPLPPHASPPAQPDS
Ga0307294_1034350313300028810SoilSLQKPYCGLGRAAVFDMPIRQYLDGERLDPETTCLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPQTSRPDS
Ga0307302_1063170713300028814SoilRLDPETTRLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPQTSRPDS
Ga0307286_1013677413300028876SoilTPIMPIRPYLDSHRLDPETVRLLGIAFETALQALRSWGVFDPPREAVAKALIDLAKGGERDPERLCDEALKACQGAIISVPTPLPSPDAPPRTPDSSS
Ga0307304_1006525323300028885SoilMPIRQYLDGERLDPETTRLLGIVFETAIQALRNRGVVDPPREAIARAIIGFAKAGERDPERLCDLALEACAKPIISDPSPLPPQTSRPDS
Ga0307304_1053643313300028885SoilMPIGQYLDGEQFDPETARLLGIAFEFAIQALHNWGVVDPPRDAIARAIIGFARAGERDPERLCDLAVEACAKPVISNPSPLPPDAAP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.