NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F070266

Metagenome Family F070266

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F070266
Family Type Metagenome
Number of Sequences 123
Average Sequence Length 86 residues
Representative Sequence LDTLAALARGPLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDAAGLELERVIPVMPLLSEVWVVVVRKPGSS
Number of Associated Samples 115
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.88 %
% of genes near scaffold ends (potentially truncated) 95.12 %
% of genes from short scaffolds (< 2000 bps) 95.93 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (69.106 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(17.073 % of family members)
Environment Ontology (ENVO) Unclassified
(26.016 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(43.902 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.
1Ga0066398_101885782
2Ga0066395_100774071
3Ga0066674_102726272
4Ga0066680_104329451
5Ga0066690_105420301
6Ga0066690_105420321
7Ga0066684_100937443
8Ga0066684_104968141
9Ga0066678_101642471
10Ga0066676_105528572
11Ga0066388_1012278521
12Ga0066388_1039639232
13Ga0070669_1015220432
14Ga0070708_1017102761
15Ga0066686_110322982
16Ga0070697_1003719131
17Ga0066697_106802351
18Ga0066905_1001230471
19Ga0074472_112308031
20Ga0066651_102610771
21Ga0079037_1022678842
22Ga0066653_101561411
23Ga0066658_102292041
24Ga0075425_1030626021
25Ga0068865_1018286492
26Ga0079219_116627321
27Ga0075435_1018967721
28Ga0066710_1048587192
29Ga0102851_135208621
30Ga0105247_116826121
31Ga0066709_1000866345
32Ga0066709_1046301962
33Ga0075423_116142331
34Ga0075423_128984411
35Ga0126380_107570831
36Ga0126384_101961472
37Ga0126382_102101323
38Ga0134109_104640932
39Ga0134063_102969012
40Ga0134124_105981682
41Ga0126383_125136112
42Ga0134122_113364071
43Ga0124844_11600401
44Ga0137388_115088771
45Ga0137364_103304762
46Ga0137381_105644832
47Ga0137360_112884432
48Ga0137394_110672091
49Ga0137419_117725162
50Ga0164301_110832442
51Ga0134076_100952811
52Ga0137405_11457992
53Ga0182876_100113011
54Ga0180085_10750532
55Ga0137403_112854862
56Ga0134072_102829261
57Ga0132255_1003182511
58Ga0182038_103186931
59Ga0134069_12999412
60Ga0134112_100562872
61Ga0134083_102872891
62Ga0187785_103627412
63Ga0066655_105186162
64Ga0210387_104553092
65Ga0224723_11003041
66Ga0207684_101500753
67Ga0207684_115742192
68Ga0207662_106306611
69Ga0207650_106316232
70Ga0207701_111100302
71Ga0207704_114489492
72Ga0207704_114703432
73Ga0207691_101772742
74Ga0207658_106466531
75Ga0207677_116187052
76Ga0207703_105014492
77Ga0207683_107836922
78Ga0209468_11646962
79Ga0209761_10685443
80Ga0209472_12968252
81Ga0209375_11105632
82Ga0209808_12556462
83Ga0209160_10988412
84Ga0209056_102459413
85Ga0209161_100299565
86Ga0209180_102439962
87Ga0209465_100801222
88Ga0209283_101789221
89Ga0209590_109642102
90Ga0247818_109880411
91Ga0310886_104909701
92Ga0318515_101591232
93Ga0310915_103127371
94Ga0318572_107662381
95Ga0318500_105166961
96Ga0307468_1017127932
97Ga0318502_107019852
98Ga0318502_107536671
99Ga0318494_103512012
100Ga0318523_104979231
101Ga0318567_102779172
102Ga0318564_103178892
103Ga0318499_102273962
104Ga0318517_102701032
105Ga0318512_104927412
106Ga0306925_112551211
107Ga0306922_112688952
108Ga0318556_102418922
109Ga0318506_101303852
110Ga0318504_104166271
111Ga0318513_102229412
112Ga0318524_103885392
113Ga0318553_104554541
114Ga0306924_103477563
115Ga0307470_112323422
116Ga0307471_1022262501
117Ga0307472_1019628122
118Ga0335084_104419121
119Ga0334722_107659301
120Ga0310914_115432322
121Ga0316620_100914663
122Ga0326731_10164481
123Ga0247830_117122112
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.23%    β-sheet: 19.82%    Coil/Unstructured: 54.95%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

1020304050607080LDTLAALARGPLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDAAGLELERVIPVMPLLSEVWVVVVRKPGSSSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
69.1%30.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Microbial Mat
Sediment
Freshwater Sediment
Freshwater Wetlands
Soil
Sediment (Intertidal)
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Agricultural Soil
Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Peatland
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Peat Soil
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
8.9%3.3%5.7%16.3%4.1%17.1%3.3%3.3%5.7%3.3%3.3%3.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0066398_1018857823300004268Tropical Forest SoilHLPAECRPRVLRTLAELARGPLVGTVCHPYTLKTFGRSVRRLLGRKAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLSVPSGAQLAARRGGAQ*
Ga0066395_1007740713300004633Tropical Forest SoilSRPRVLRTLAELARGPLVGTVCHPYTLKTFGRSVRRLLGRKAKRSPRLTRAALAAEVAAAGLRLERVIPVMPILSEVWVVVLSVPSAPQLAAPRGGAQ*
Ga0066674_1027262723300005166SoilVVCTRFLMHLPAESRPRVLRTLAELARGPLVGTVCHPYTLKTFGRGVRRLLGCQAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRGGVQ*
Ga0066680_1043294513300005174SoilPAESRPRVLSTLAGLTRGPLVATVCHPYTVKSLGRSVRRLLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRHPARTT*
Ga0066690_1054203013300005177SoilCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT*
Ga0066690_1054203213300005177SoilCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRHPARTT*
Ga0066684_1009374433300005179SoilHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRHPARTT*
Ga0066684_1049681413300005179SoilLMHVPAAGRPRVLDTLAALARGPLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDAAGLELGRVIPVMPLLSEVWVVVVRKPGSS*
Ga0066678_1016424713300005181SoilLRTLAELARGPLVGTVCHPYTLKTFGRGVRRLLGRQAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRVGVQ*
Ga0066676_1055285723300005186SoilAGLTHGPLVATVCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT*
Ga0066388_10122785213300005332Tropical Forest SoilMFRTMADLARGPVIATVCHPYTWKSFQRAVRRRLGGRAKRSPRLTRRELATEASSAGLRIERVIPVLPLLSEVWVVVLRTLPRPS*
Ga0066388_10396392323300005332Tropical Forest SoilELRPRVLAAMARLARGPLVATVCHPYTVKSAGRALRRALGRPAKRSPRLTRRQLEGEVAAAGLRLERVIPVLPILSEVWVIVVRTSPGAA*
Ga0070669_10152204323300005353Switchgrass RhizosphereAVVSTRFLMHLPPELRPRVLAALARLARGPVVATVCHPYTFKSFGRTVRGALGFATKKSARITRRELDAEVASAGLVLERVIPVMPILSEVWVIVVHATPGAA*
Ga0070708_10171027613300005445Corn, Switchgrass And Miscanthus RhizosphereAALARGPLVATVCHPYTLKSLGRALRRAFGGRAKRSPRLTRRALADEVDAAGLELGRVIPVMPLLSEVWVVVVRKPGSTS*
Ga0066686_1103229823300005446SoilTVCHPYTVKSLGRWLRRRLGARPKRSPRLSRRALAAEAAAAGLELERVISVLPLLSEVWVVVMRHRRVPQ*
Ga0070697_10037191313300005536Corn, Switchgrass And Miscanthus RhizosphereTLAALARGPLVATVCHPYTVKSFGRWVRRRLGGTPKASARLTRRALDGELDAAGLRLERLIRVLPLLSEVWVVVVRRAEST*
Ga0066697_1068023513300005540SoilESRPRVLRTLAELARGPLVGTVCHPYTLKTFGRGVRRLLGRQAKRSPRLTRPALAAEVAAAGLCLERVIPVMRILSEVWVVVLRVPPGAQLAAPPGGVQ*
Ga0066905_10012304713300005713Tropical Forest SoilTISHPYTYKSFQRAVRRMLGLKVKRSPRLTRRELVAEAAAAGLRIQRVIPVLPLLSEVWVVVLSTPRPS*
Ga0074472_1123080313300005833Sediment (Intertidal)TRFLMHLPPEIRPRVLAALARLAKGPVVATVCHPYTMKSFGRAARRALGGQAKRSPRITRAQLEQEVRAAGLHLEAVIPVAPLLSEVWVIVVRRVPGAH*
Ga0066651_1026107713300006031SoilTRFLMHLPAESRPRVLRTLAELAHGPLVGTVCHPYTLKTFGRGVRRLLGRQAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRGGVQ*
Ga0079037_10226788423300006224Freshwater WetlandsFLMHLPPDVRPRVLRTLAGLTSGPVIATVCHPYTWKSFQRGVRRALGGKAKRSPRLTRRELEAEAASAGLRLELVIPVLALLSEVWVVVLRALPEASG*
Ga0066653_1015614113300006791SoilGPLVGTVCHPYTLKTFGRGVRRLLGCQAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRGGVQ*
Ga0066658_1022920413300006794SoilMHVPAESRPRVLSTLAGLTRGPLVATVCHPYTLKSLGRSVRRLLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRHPAPDHVAGHPRRPQ*
Ga0075425_10306260213300006854Populus RhizosphereATLRPRVLAALAALARGPVVATVCHPYTVKQGGRAVRRALGLRAKESVRLTRRQLASEVAAAGLTLERVIPVLPLLSEVWVIVVRALPRAA*
Ga0068865_10182864923300006881Miscanthus RhizosphereTLCHPYTFKSFGRAVRRRLGVSVKRSPRLTRRALAAEIAAAGLHLERIIPVAPILSEVWVVVLRRPTVTA*
Ga0079219_1166273213300006954Agricultural SoilAPARPRVLRTLGGLTHGPLVVTVCHPYTVKSLGRAARRGLGGSAKRSPRLTRRELAAEVDAAGLVLERVIPVMPFLSEVWVAVLRNR*
Ga0075435_10189677213300007076Populus RhizosphereTLRPRVLAALAALARGPVVATVCHPYTVKQGGRAVRRALGLRAKESVRLTRRQLASEVAAAGLTLERVIPVLPLLSEVWVIVVRALPRAA*
Ga0066710_10485871923300009012Grasslands SoilAELARGPLVGTVCHPYTLKTFGRGVRRLLGRQAKRSPRLTRPALAAEVAAAGLCLERVIPVMPILSEVWVVVLRVPPGAQLAAPPGGVQ
Ga0102851_1352086213300009091Freshwater WetlandsMHLPPEHRPTMLRGLAELTRGPVVATVCHPYTLKSLGRALRRAIGLNAKRSQRLRRRDLAAEASTAGLLLERVIPVLPFLSEVWVVVLRTPPAPLQGLSKHCGNNAANGPG*
Ga0105247_1168261213300009101Switchgrass RhizosphereDAVVSTRFLMHLPPELRPRVLAALAGLARGPVVATVCDPYTLKSFGRTVRDALGFRTKKSARITRRELDAEVASAGLVLERVIPVMPILSEVWVIVVHATPGAA*
Ga0066709_10008663453300009137Grasslands SoilMHLPPETRPRVLRTLAELAAGPLVATVCHPYTVKTLGRSLRRLLGLPAKRSPRLTRRALAAEVDAAGLTLERVIPVLPLLSEVWVVVLTTRASSNGQAVRRTNGG*
Ga0066709_10463019623300009137Grasslands SoilAELARGPLVGTVCHPYTLKTFGRGVRRLLGRQAKRSPRLTRPALAAEVAAAGLCLERVIPVMRILSEVWVVVLRVPPGAQLAAPPGGVQ*
Ga0075423_1161423313300009162Populus RhizosphereICTRFLMHLPAESRPRVLRTLAELARGPLVGTVCHPYTLKTFGRSVRRLLGRTAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLSVPSGAQLAAPRGGPQ*
Ga0075423_1289844113300009162Populus RhizosphereDELRPRVLATLATLARGPVVATVCHPYTVKSFGRAVRAALGRTVKRSPRLTRRVLEAEVAAAGLRLERVIPVMPVLSEVWVIVLHATPGAA*
Ga0126380_1075708313300010043Tropical Forest SoilPVIATVSHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT*
Ga0126384_1019614723300010046Tropical Forest SoilVLRALADLARGPVIATISHPYTYKSFQRALRRMLGLRVKRSPRLTRRELVAEAASAGLRIQRVIPVLPLLSEVWVVVLSTPRPS*
Ga0126382_1021013233300010047Tropical Forest SoilALARGPLVATVCHPYTVKSLGRWIRRRLGAHPKRSPRLTRRALAAEVRAAGLELERVIPVLPFLSEVWVAVIRQRARPT*
Ga0134109_1046409323300010320Grasslands SoilLTRGPLVATVCHPYTLKSLGRSGRRLLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRHRARTT*
Ga0134063_1029690123300010335Grasslands SoilHLGSMPLSVQAALARGPLVATVCHPYTLKSLGRALRRALGGRAKRSPRLTRRALAGEVDAAGLELRRVIPVMPLLSEVWVVVVRKPASTS*
Ga0134124_1059816823300010397Terrestrial SoilLPAAVRPRVLRTLAGLTHGPLVVTVCHPYTVKSLGRAARRRLGGSAKQSPRLTRRDLAAEVDAAGLVLERLIPVMPFLSEVWVAVLRNR*
Ga0126383_1251361123300010398Tropical Forest SoilPPESRPRVLRTLAELARGPLVGTVCHPYTLKTFGRSVRRLLGRKAKRSPRLTRAALAAEVAAAGLRLERVIPVMPILSEVWVVVLSVPSAPQLAAPRGGAQ*
Ga0134122_1133640713300010400Terrestrial SoilATLTRGPVVATVCHPYTVKTFGRSVRAALGRKVKKSPRLTRVELEAEVASAGLRLERVIPVMPILSEVWVIVVHATPGAA*
Ga0124844_116004013300010868Tropical Forest SoilVLGVLGELARGPVIATVSHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT*
Ga0137388_1150887713300012189Vadose Zone SoilLPAESRPRVLRTLAELARGPLVGTVCHPYTLKTFGRGVRRLLGRQAKRSPRLTRPALAAEVALAGLRLERVIPVMPILSEVWVVVLSVPSGAQLAAPRGGVQ*
Ga0137364_1033047623300012198Vadose Zone SoilGLTHGPLVATVCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT*
Ga0137381_1056448323300012207Vadose Zone SoilAALARGPLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDTAGLELERVIPVMPLLSEVWVVVVRKPGSS*
Ga0137360_1128844323300012361Vadose Zone SoilLDTLAALARGPLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDAAGLELERVIPVMPLLSEVWVVVVRKPGSS*
Ga0137394_1106720913300012922Vadose Zone SoilGPLVATVCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT*
Ga0137419_1177251623300012925Vadose Zone SoilCHPYTLKTFGRGVRRMLGRQAKRSPRLTRSALAAEVAAAGLRLERVIPVMPVLSEVWVVVLRVPSGAQLAAPRVGVQ*
Ga0164301_1108324423300012960SoilAGLTHGPLVVTVCHPYTVKSLGRAARRRLGGSAKQSPRLTRRDLAAEVDAAGLVLERVIPVMPFLSEVWVAVLRNR*
Ga0134076_1009528113300012976Grasslands SoilIATVCHPYTVKSVGRSMRRLLGRPTKRSPRLTRRALAAEVEAADLTLERVIPVLPLLSEVWVVVLRNRAPTT*
Ga0137405_114579923300015053Vadose Zone SoilLRTLAGLTHGPLVATVCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT*
Ga0182876_1001130113300015240Microbial MatELASGPVVATMCHPYTWKSFQRGVRRALGGNPKRSPRLTRRELAEEAARAGLRLERVIPVMPLLSEVWVVVLRALPRTS*
Ga0180085_107505323300015259SoilTVCHPYTLKSFGRAVRRGLGGVAKKSPRLTRRELEAEVSAAGLRLERVIPVMPILSEVWVIVVHATPGAA*
Ga0137403_1128548623300015264Vadose Zone SoilFLMHLPPDSRPRVLGTLAALARGPLVATVCHPYTLKSLGRALRRALGGRAKRSPRLTRRALAREVDAAGLELERVIPVLPLLSEVWVVVVRKPGSTS*
Ga0134072_1028292613300015357Grasslands SoilRGPLVATVCHPYTVKNLGRWIRRRLGGRPKRSPRLTRRALAAEIRAAGLELERVIPVLPLLSEVWVVVLRHPRPDHVAGHPRRPQ*
Ga0132255_10031825113300015374Arabidopsis RhizosphereMFRTMADLARGPVIATVCHPYTWKSFQRGLRRRLGGRAKRSPRLTRRELATEASNAGLRIERVIPVLPLLSEVWVVVLRTLPRPS*
Ga0182038_1031869313300016445SoilTRSRVLHVLGEVARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0134069_129994123300017654Grasslands SoilARGPLVGTVCHPYTLKTFGRGVRRLLGRQVKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRGGVQ
Ga0134112_1005628723300017656Grasslands SoilVLDTLAGLGRGPLVATVCHPYTLKSLVRALRRAFGGRAKRSPRLTRRMLAGEVAAAGLELGRVIRVMPLLSEVWVVVVRKPGSTS
Ga0134083_1028728913300017659Grasslands SoilLGTLAALARGPLVATVCHPYTLKSLGRALRCALGGRAKRSPRLTRRALAGEVDAAGLELGRVIPVMPLLSEVWVVVVRKPGTTS
Ga0187785_1036274123300017947Tropical PeatlandVLRPSVMAALADVARGPLVATVCHPYTAKQAGRAVRRAFGFAAKQSPRLTRRELEHEVSTAGLRLTRLIPVLPVLSEVWVIVVRRS
Ga0066655_1051861623300018431Grasslands SoilGTVCHPYTLKTFGRGVRRLRGCEAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRGGVQ
Ga0210387_1045530923300021405SoilLMHLPSDTRSRVLGVLGELARGPVIATVCHPYTYKSFQRALRRALGGKAKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
(restricted) Ga0224723_110030413300021517Freshwater SedimentARGPVVATVCHPYTLKSLLRAVRRRLGFEAKQSPRLTRRELAAEVEAAGLVLERVIPVLPILSEVWVIVLRRPASCPPAS
Ga0207684_1015007533300025910Corn, Switchgrass And Miscanthus RhizosphereRVLGTLAGLTHGPLVATVCHPYTVKSLGRWIRRLLGRPAKRSPRLTRRALAAEVEAAGLRLERVIAVLPLLSEVWVVVLGKRARR
Ga0207684_1157421923300025910Corn, Switchgrass And Miscanthus RhizosphereSRPRVLGTLAALARGPLVATVCHPYTVKSFGRWVRRRLGGTPKASARLTRRALDGELDAAGLRLERLIRVLPLLSEVWVVVVRRAEST
Ga0207662_1063066113300025918Switchgrass RhizosphereMHLPAELRPRVLASLARLARGPVVATVCHPYTFKTFGRTVRGALGFKTKKSARITRRELEAEVASAGLRLERVIPVMPILSEVWVIVVHATPGAA
Ga0207650_1063162323300025925Switchgrass RhizosphereARGPVVATVCHPYTFKSFGRTVRGALGFRTKKSARITRRELDAEVASAGLVLERVIPVMPILSEVWVIVVHATPGAA
Ga0207701_1111003023300025930Corn, Switchgrass And Miscanthus RhizospherePELRPRVLAALARLARGPVVATVCHPYTFKSFGRTVRGALGFATKKSARITRRELDAEIASAGLRLERVIPVMPILSEVWVIVVHATPGAA
Ga0207704_1144894923300025938Miscanthus RhizosphereTLCHPYTFKSFGRAVRRRLGVSVKRSPRLTRRALAAEIAAAGLHLERIIPVAPILSEVWVVVLRRPTVTA
Ga0207704_1147034323300025938Miscanthus RhizosphereVLRALASLARGPLVATVCHPYTVKSFGRAVRRGLGRDVKKSPRLTRREIEAEVSAAGLRLERIIPVMPILSEVWVVVVHATPRAA
Ga0207691_1017727423300025940Miscanthus RhizosphereMMHLPPDVRPRVLRTLAELTSGPVVATMCHPYTWKSFQRGVRRALGGNPKRSPRLTRRELEEEAAQAGLRLERVIPVLPLLSEVWVVVLRALPRAS
Ga0207658_1064665313300025986Switchgrass RhizosphereVVATVCHPYTFKSFGRTVRGALGFATKKSARITRRELDAEVASAGLVLERVIPVMPILSEVWVIVVHATPGAA
Ga0207677_1161870523300026023Miscanthus RhizosphereMHLPSEIRPRVLASLARLAHGPVVATVCHPYTFKSFGRTVRGALGFKTKKSARITRRELDAEVASAGLRLERVIPVMPILSEVWVIVVHATPGAA
Ga0207703_1050144923300026035Switchgrass RhizosphereARGPVVATVCHPYTFKSFGRTVRGALGFKTKKSARITRRELDAEVASAGLRLERVIPVMPILSEVWVIVVHATPGAA
Ga0207683_1078369223300026121Miscanthus RhizosphereMHLPPELRPRVLAALARLARGPVVATVCHPYTFKSFGRTVRGALGFATKKSARITRRELDAEVASAGLVLERVIPVMPILSEVWVIVVHATPGAA
Ga0209468_116469623300026306SoilPAAGRPRVLDTLAALARGPLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDAAGLELERVIPVMPLLSEVWVVVVRKPGSS
Ga0209761_106854433300026313Grasslands SoilVATVCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT
Ga0209472_129682523300026323SoilVCHPYTLKSLVRALRRAFGGRAKRSPRLTRRMLAGEVAAAGLELGRVIRVMPLLSEVWVVVVRKPGSTS
Ga0209375_111056323300026329SoilAAGRPRVLDTLAALARGPLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDAAGLELERVIPVMPLLSEVWVVVVRKPGSS
Ga0209808_125564623300026523SoilMHVPAASRPRVLRTLAGLTHGPLVATVCHPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT
Ga0209160_109884123300026532SoilLMHLPPASRPRVLGTLAALARGPLVATVCHPYTLKSLGRALRRALGGRAKRSPRLTRRELAGEVAAAGLELGRVIPVMPLLSEVWVVVVRKPGSTS
Ga0209056_1024594133300026538SoilRVLRTLAELARGPLVGTVCHPYTLKTFGRGVRRLLGRQAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRGGVQ
Ga0209161_1002995653300026548SoilTVCHPYTLKTFGRGVRRLLGCQAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLRVPSGAQLAAPRGGVQ
Ga0209180_1024399623300027846Vadose Zone SoilPYTVKSLGRSVRRWLGRPTKRSPRLTRRALAAEVEAAGLQLERVIPVLPLLSEVWVVVLRNRARTT
Ga0209465_1008012223300027874Tropical Forest SoilPESRPRVLRTLAELARGPLVGTVCHPYTLKTFGRSVRRLLGRKAKRSPRLTRAALAAEVAAAGLRLERVIPVMPILSEVWVVVLSVPSAPQLAAPRGGAQ
Ga0209283_1017892213300027875Vadose Zone SoilRPRVLATLAALTHGPLVATVCHPYTVKSLGRWIRRLLGRPAKRSPRLTRRALAAEVEAAGLRLERVIPVLPLLSEVWVVVLGKRARR
Ga0209590_1096421023300027882Vadose Zone SoilLVATVCHPYTLKSFGRALRRALGRRAKQSPRLTRRALAAELDAAGLELERVIPVMPLLSEVWVVVVRKPGSS
Ga0247818_1098804113300028589SoilHLPAEARPRVLRTLAELTHGPLVATVCHPYTAKSFGRSLRRGLGGRSKRSPRLTRAELAAEVAAAGLVLRRIIPVLPVLSEVWVVVIGNP
Ga0310886_1049097013300031562SoilCHPYTWKSFQRGVRRALGGNPKRSPRLTRRELEEEAAQAGLRLERVIPVLPLLSEVWVVVLRALPRAS
Ga0318515_1015912323300031572SoilDTRSCMLRVLGELARGPVIATVCHPYTYKSFQRALRRALGGTAKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPTAT
Ga0310915_1031273713300031573SoilETRSRVLHVLGEVARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPTAT
Ga0318572_1076623813300031681SoilVLGEVARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318500_1051669613300031724SoilTRSCMLRVLGELARGPVIATVCHPYTYKSFQRALRRALGGTAKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0307468_10171279323300031740Hardwood Forest SoilLPAAMRPRMLRALAEAADGPLVATVCHPYTLKSASRALRSALGLRPKRGRRLTRRELEAEVAAAGLRLERVIPVMPLLSEVWVVVIRTA
Ga0318502_1070198523300031747SoilPYTYKSFQRALRRMLGAKVKRSPRLTRRALVAEAASVGLRVERVIPVLPLLSEVWVVVLSTPRPS
Ga0318502_1075366713300031747SoilGELARGPVIATVCHPYTYKSFQRALRRALGGTPKRSQRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318494_1035120123300031751SoilGVLGELARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318523_1049792313300031798SoilLMHLPSETRSRVLHVLGEVARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318567_1027791723300031821SoilCHPYTYKSFQRALRRALGGTAKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPTAT
Ga0318564_1031788923300031831SoilEHARACLGVLGELARGPVIATVCHPYTYKSFQRALRRALGGTPKRSQRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318499_1022739623300031832SoilMMHLPPDVRPHVLRALADLARGPVIATICHPYTYKSFQRALRRMLGAKVKRSPRLTRRALVAEAASVGLRVERVIPVLPLLSEVWVVVLS
Ga0318517_1027010323300031835SoilRVLRALADLARGPVIATICHPYTYKSFQRALRRMLGAKVKRSPRLTRRALVAEAASVGLRVERVIPVLPLLSEVWVVVLSTPRPS
Ga0318512_1049274123300031846SoilFMMHLPSETRSRVLRVLGELARGPVIATVSHPYTYKSFQRALRRAFGGTAKHSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0306925_1125512113300031890SoilATVCHPYTYKSFQRALRRALGGTAKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRPLPRAT
Ga0306922_1126889523300032001SoilLMHLPSETRSRVLGVLDELARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318556_1024189223300032043SoilARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318506_1013038523300032052SoilCMLRVLGELARGPVIATVCHPYTYKSFQRALRRALGGTAKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPTAT
Ga0318504_1041662713300032063SoilATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0318513_1022294123300032065SoilRGPVIVTICHPYTYKSFQRALRRMLGAKVKRSPRLTRRALVAEAASVGLRVERVIPVLPLLSEVWVVVLSTPRPS
Ga0318524_1038853923300032067SoilRAPAGGAPRVLAAMARATRGPVVATVCHPYTFKRFGRGVRAVLGRRVKRSPRLTRRELDAEVAAAGLRLERVIPVMPILSEVWVIVVRTMPGAA
Ga0318553_1045545413300032068SoilLPSETRSRVLGVLGELARGPVIATVCHPYTYKSFQRALRRALGGTPKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0306924_1034775633300032076SoilSDTRSRMLRVLGELARGPVIATVCHPYTYKSFQRALRRALGGTAKRSPRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0307470_1123234223300032174Hardwood Forest SoilELARGPLVGTVCHPYTLKTFGRSVRRLLGRTAKRSPRLTRSALAAEVAAAGLRLERVIPVMPILSEVWVVVLSVPSGAQLAAPRGGPQ
Ga0307471_10222625013300032180Hardwood Forest SoilHLPPESRPGVLRTLARLTRGPLVATVCHPYPLKSLGRSVRRLLGRTVKRSPRLTRRALAAEVEAAGLRLERVIPVLPLLSEVWVVVIRNRAAST
Ga0307472_10196281223300032205Hardwood Forest SoilVSSRFLMHLPAVARPPMLRALAEAADGPLVATVCHPYTLKSLSRALRRAFGFRAKRQPRLTRRDLEAEVAAAGLRLERVIPVLPLLSEVWVVVIRTA
Ga0335084_1044191213300033004SoilLMLVPAARRPHVLATLAALTDGPLVATVCHPYTLKSGTRALRRLLGVRAKRSPRITRAVLRREAAAAGLRIDRIVPLVPLFSEVWVVVLRTAR
Ga0334722_1076593013300033233SedimentLAELARGPFVGTICHPYTLKTFGRGVRRLLGREAKRSPRLTRPAFAAEVAAAGLSLERVIPVMPILSEVWVVVLRVPWGVQLAAPRGGVQ
Ga0310914_1154323223300033289SoilGPVIATVCHPYTYKSFQRALRRALGGTPKRSQRLTRRELEDEAARAGMRLERVIPVLPLLSEVWVVVLRTLPRAT
Ga0316620_1009146633300033480SoilTLAGLARGPVVATVCHPWTVKSFGRAVRRFFGGRAKQSPRITRRELAAEVAAAGLRLERVIPVLPLLSEVWVVVVRTPPADA
Ga0326731_101644813300033502Peat SoilVLRVLGELARGPVVATVCHPYTYKSFQRALRRALGGSAKRSPRLTRRELEDEAARAGMRIERVIPVLPILSEVWVVVLSTLPRPT
Ga0247830_1171221123300033551SoilVCARFLMHLPAEARPRVLRTLAELTHGPLVATVCHPYTAKSFGRSLRRGLGGRSKRSPRLTRAELAAEVAAAGLVLRRIIPVLPVLSEVWVVVIGNP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.