Metagenome / Metatranscriptome Family F070184

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070184
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	46 residues
Representative Sequence	GLRYVTGMSEVDGLAGTGLETINDKSARWTVPFLVGVRARF
Number of Associated Samples	101
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.50 %
% of genes near scaffold ends (potentially truncated)	91.87 %
% of genes from short scaffolds (< 2000 bps)	89.43 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.553 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.447 % of family members)
Environment Ontology (ENVO)	Unclassified (39.024 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.033 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.04% β-sheet: 0.00% Coil/Unstructured: 86.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF01139	RtcB	4.92
PF00072	Response_reg	2.46
PF06965	Na_H_antiport_1	2.46
PF12796	Ank_2	2.46
PF10009	DUF2252	2.46
PF10116	Host_attach	1.64
PF12006	DUF3500	1.64
PF01625	PMSR	1.64
PF07676	PD40	1.64
PF07969	Amidohydro_3	1.64
PF13486	Dehalogenase	0.82
PF06956	RtcR	0.82
PF01894	UPF0047	0.82
PF02518	HATPase_c	0.82
PF00753	Lactamase_B	0.82
PF07274	DUF1440	0.82
PF01103	Omp85	0.82
PF13442	Cytochrome_CBB3	0.82
PF13557	Phenol_MetA_deg	0.82
PF03465	eRF1_3	0.82
PF04545	Sigma70_r4	0.82
PF00782	DSPc	0.82
PF01841	Transglut_core	0.82
PF01464	SLT	0.82
PF01170	UPF0020	0.82
PF00325	Crp	0.82
PF00076	RRM_1	0.82
PF13460	NAD_binding_10	0.82
PF00248	Aldo_ket_red	0.82
PF05731	TROVE	0.82
PF04237	YjbR	0.82
PF00656	Peptidase_C14	0.82
PF13360	PQQ_2	0.82
PF07715	Plug	0.82
PF13620	CarboxypepD_reg	0.82
PF02615	Ldh_2	0.82
PF02771	Acyl-CoA_dh_N	0.82
PF04457	MJ1316	0.82
PF05598	DUF772	0.82
PF01569	PAP2	0.82
PF01734	Patatin	0.82
PF01794	Ferric_reduct	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	4.92
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	2.46
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	1.64
COG4650	Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	Transcription [K]	1.64
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.82
COG0116	23S rRNA G2445 N2-methylase RlmL	Translation, ribosomal structure and biogenesis [J]	0.82
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.82
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.82
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.82
COG3477	Uncharacterized membrane protein YagU, involved in acid resistance, DUF1440 family	Function unknown [S]	0.82
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.82
COG2813	16S rRNA G1207 or 23S rRNA G1835 methylase RsmC/RlmG	Translation, ribosomal structure and biogenesis [J]	0.82
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.82
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.82
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.82
COG2263	Predicted RNA methylase	General function prediction only [R]	0.82
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.82
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	0.82
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.82
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.82
COG1531	Uncharacterized conserved protein, UPF0248 family	Function unknown [S]	0.82
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.82
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.82
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.82
COG0286	Type I restriction-modification system, DNA methylase subunit	Defense mechanisms [V]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.55 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.55 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.55 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	54.47 %
Unclassified	root	N/A	15.45 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.44 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.89 %
Unclassified	root	N/A	15.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.13 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2.44 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	1.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.89 %
Unclassified	root	N/A	15.45 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	5.69 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	1.63 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.89 %
Unclassified	root	N/A	15.45 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	5.69 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	1.63 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.89 %
Unclassified	root	N/A	15.45 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	4.88 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.63 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.63 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.89 %
Unclassified	root	N/A	15.45 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	4.88 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.63 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.81 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.81 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.89 %
Unclassified	root	N/A	15.45 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	4.88 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.63 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	0.81 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.81 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_15497374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300000955\|JGI1027J12803_108045436	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300001213\|JGIcombinedJ13530_107684634	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300001431\|F14TB_106508328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300004114\|Ga0062593_100192288	Not Available	1613	Open in IMG/M
3300004156\|Ga0062589_100170654	All Organisms → cellular organisms → Bacteria → Acidobacteria	1525	Open in IMG/M
3300004480\|Ga0062592_100506358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	999	Open in IMG/M
3300004643\|Ga0062591_101683026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300005293\|Ga0065715_10758770	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	627	Open in IMG/M
3300005347\|Ga0070668_100037481	All Organisms → cellular organisms → Bacteria → Acidobacteria	3702	Open in IMG/M
3300005354\|Ga0070675_100608166	Not Available	992	Open in IMG/M
3300005356\|Ga0070674_101304300	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300005356\|Ga0070674_101460339	Not Available	614	Open in IMG/M
3300005367\|Ga0070667_102303809	Not Available	507	Open in IMG/M
3300005455\|Ga0070663_100144182	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300005456\|Ga0070678_100624324	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	964	Open in IMG/M
3300005543\|Ga0070672_100640932	Not Available	928	Open in IMG/M
3300005548\|Ga0070665_100386238	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1407	Open in IMG/M
3300005618\|Ga0068864_102633423	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300005718\|Ga0068866_10756457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300005719\|Ga0068861_100280422	Not Available	1435	Open in IMG/M
3300005719\|Ga0068861_100584555	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300005719\|Ga0068861_101062412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300005844\|Ga0068862_100087997	Not Available	2702	Open in IMG/M
3300005844\|Ga0068862_100128855	All Organisms → cellular organisms → Bacteria → Proteobacteria	2236	Open in IMG/M
3300006358\|Ga0068871_100294371	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300006844\|Ga0075428_101347396	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300006847\|Ga0075431_100738932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300006853\|Ga0075420_100186213	All Organisms → cellular organisms → Bacteria → Acidobacteria	1815	Open in IMG/M
3300009053\|Ga0105095_10521526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300009094\|Ga0111539_10073398	All Organisms → cellular organisms → Bacteria → Acidobacteria	4034	Open in IMG/M
3300009094\|Ga0111539_12943700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300009147\|Ga0114129_12188426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300009147\|Ga0114129_13433128	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	508	Open in IMG/M
3300009148\|Ga0105243_10021231	All Organisms → cellular organisms → Bacteria	4928	Open in IMG/M
3300009148\|Ga0105243_10615162	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1048	Open in IMG/M
3300009156\|Ga0111538_11319202	Not Available	911	Open in IMG/M
3300009162\|Ga0075423_11603894	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300009179\|Ga0115028_11788233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300009553\|Ga0105249_12026857	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	648	Open in IMG/M
3300010166\|Ga0126306_10495912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300010375\|Ga0105239_12948111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300010403\|Ga0134123_11385960	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300011429\|Ga0137455_1094836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	870	Open in IMG/M
3300011441\|Ga0137452_1065565	All Organisms → cellular organisms → Bacteria → Acidobacteria	1166	Open in IMG/M
3300011442\|Ga0137437_1347753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300012212\|Ga0150985_119295265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300012212\|Ga0150985_122634881	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300012232\|Ga0137435_1007175	All Organisms → cellular organisms → Bacteria	3149	Open in IMG/M
3300012469\|Ga0150984_103529099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300012469\|Ga0150984_105966053	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300012469\|Ga0150984_108252478	Not Available	530	Open in IMG/M
3300012469\|Ga0150984_121226290	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300012897\|Ga0157285_10361275	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	512	Open in IMG/M
3300012903\|Ga0157289_10353789	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012903\|Ga0157289_10385202	Not Available	522	Open in IMG/M
3300012911\|Ga0157301_10468805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300012912\|Ga0157306_10225141	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300013306\|Ga0163162_10639782	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300013306\|Ga0163162_12597849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300014325\|Ga0163163_13070445	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	521	Open in IMG/M
3300014326\|Ga0157380_13168715	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300014745\|Ga0157377_10030158	All Organisms → cellular organisms → Bacteria → Acidobacteria	2935	Open in IMG/M
3300014861\|Ga0180061_1087380	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300015077\|Ga0173483_10861211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300015077\|Ga0173483_10992616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300015200\|Ga0173480_10164200	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300015201\|Ga0173478_10130423	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300015371\|Ga0132258_10774112	All Organisms → cellular organisms → Bacteria	2418	Open in IMG/M
3300015372\|Ga0132256_100765435	Not Available	1082	Open in IMG/M
3300015372\|Ga0132256_101563210	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300015374\|Ga0132255_101959192	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	891	Open in IMG/M
3300017965\|Ga0190266_10099631	Not Available	1190	Open in IMG/M
3300018466\|Ga0190268_11652535	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300018469\|Ga0190270_10611956	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300018469\|Ga0190270_13141282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300018469\|Ga0190270_13141282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300018469\|Ga0190270_13151688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300018481\|Ga0190271_11133670	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300019362\|Ga0173479_10539381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300021081\|Ga0210379_10285924	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300025893\|Ga0207682_10309845	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300025901\|Ga0207688_10479686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300025908\|Ga0207643_10884381	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300025932\|Ga0207690_11870550	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	501	Open in IMG/M
3300025937\|Ga0207669_11069102	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300025937\|Ga0207669_11308907	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	616	Open in IMG/M
3300025938\|Ga0207704_11898559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300025945\|Ga0207679_10277603	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300025960\|Ga0207651_10690829	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300025986\|Ga0207658_11789427	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	561	Open in IMG/M
3300026121\|Ga0207683_10901434	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	821	Open in IMG/M
3300026829\|Ga0207580_1008022	Not Available	502	Open in IMG/M
3300028768\|Ga0307280_10021673	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300028809\|Ga0247824_10791644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300030336\|Ga0247826_11272145	Not Available	592	Open in IMG/M
3300031538\|Ga0310888_10000952	All Organisms → cellular organisms → Bacteria → Acidobacteria	7933	Open in IMG/M
3300031547\|Ga0310887_10464669	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300031740\|Ga0307468_100866201	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300031834\|Ga0315290_10957543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300031854\|Ga0310904_10632403	Not Available	734	Open in IMG/M
3300031908\|Ga0310900_10909702	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300031913\|Ga0310891_10112721	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300032005\|Ga0307411_10940419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	770	Open in IMG/M
3300032012\|Ga0310902_10839802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300032075\|Ga0310890_10466221	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	953	Open in IMG/M
3300032075\|Ga0310890_10773305	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300032075\|Ga0310890_11062976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300032157\|Ga0315912_10470672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	998	Open in IMG/M
3300032163\|Ga0315281_10239407	All Organisms → cellular organisms → Bacteria → Acidobacteria	2006	Open in IMG/M
3300032179\|Ga0310889_10591746	All Organisms → cellular organisms → Bacteria → Acidobacteria	571	Open in IMG/M
3300032211\|Ga0310896_10903635	Not Available	511	Open in IMG/M
3300032275\|Ga0315270_11066673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300032401\|Ga0315275_10695566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300032516\|Ga0315273_12315258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300033521\|Ga0316616_101484075	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300033550\|Ga0247829_11253986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	614	Open in IMG/M
3300033551\|Ga0247830_10396246	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300033811\|Ga0364924_118513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300034659\|Ga0314780_206316	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.85%
Host-Associated	Host-Associated	47.15%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	47.15%
Terrestrial	Environmental → Terrestrial	40.65%
Aquatic	Environmental → Aquatic	12.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	39.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.45%
Freshwater	Environmental → Aquatic → Freshwater	7.32%
Sediment	Environmental → Aquatic → Sediment	4.06%
Roots	Host-Associated → Plants → Roots	1.63%
Marine	Environmental → Aquatic → Marine	0.81%
Floodplain	Environmental → Terrestrial → Floodplain	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.76%
Lake	Environmental → Aquatic → Freshwater → Lake	4.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.06%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.44%
Loam	Environmental → Terrestrial → Soil → Loam	1.63%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.63%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.63%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.07%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	13.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.76%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.06%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.44%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.63%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.63%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	13.01%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.69%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.06%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.06%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.25%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.44%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.63%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.81%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.81%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014861	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026829	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A3-11 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032018	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_154973742	3300000550	Soil	RVSGLAEVDDLVGTGLDTINDKSQRWTLPFIGGVQFRF*
JGI1027J12803_1080454362	3300000955	Soil	LQMSRNVDMFGQLGLRWVSGMSAIDNLEGTGLETINDKSGR
JGIcombinedJ13530_1076846341	3300001213	Wetland	RWLSGMSPVDGLAGTGLEKINDNSSRWTMPLVVGLRAHF*
F14TB_1065083282	3300001431	Soil	YVTGMSEVDGLAGTGLETINDKSGRWTIPFLFGVRARF*
Ga0062593_1001922884	3300004114	Soil	VADQVEVFGQLGLRWVSGMSAVDGLAGTGLETINDNSARWTVPFVVGVRARF*
Ga0062589_1001706543	3300004156	Soil	AGKVGVYGQIGLRYVTGMSSVDGLAGTGLETINDKSSRWTMPFIAGVHLKF*
Ga0062592_1005063581	3300004480	Soil	FDVFGQVGLRWVSGMSSVDRLEGTGLDTINDNSARWTMPFLTGVRVRF*
Ga0062591_1016830261	3300004643	Soil	ARAGSRFDVFGQLGLRWMSGMSAIDNLEDTSLDTINDKSSRWTMPFLAGVRLRF*
Ga0065715_107587702	3300005293	Miscanthus Rhizosphere	DFYDQTAAFTLGGNAGVVLQMSRSVDVFGQLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF*
Ga0070668_1000374811	3300005347	Switchgrass Rhizosphere	RRVSGLAEVDDLVGTGLDTINDKSQRWTLPFIGGVQFRF*
Ga0070675_1006081662	3300005354	Miscanthus Rhizosphere	AAFTLGGNAGVVLQMSRNIDMFGQLGLRWVSGMSAVDNLEGTGLETINDKSGRWTMPFLTGVRVRF*
Ga0070674_1013043002	3300005356	Miscanthus Rhizosphere	FAQVGLRWTSGMAEIDDLEGTGLETINDKSARWTFPFIAGVRVGF*
Ga0070674_1014603392	3300005356	Miscanthus Rhizosphere	GGNGGVVLEMSSNVDMFGQAGIRWVSGMSAIDNLEGTGLETINDKSGRWTVPFLTGIRVRF*
Ga0070667_1023038092	3300005367	Switchgrass Rhizosphere	AGVMFQTGPRFDVFAQLGLRWMSGMAEIDQFEATGLNDINNKSSRWTLPLLIGVRYRF*
Ga0070663_1001441821	3300005455	Corn Rhizosphere	DMFGQVGIRWVSGMSAIDNLEGTGLETINDKSGRWTMPFLTGVRVRF*
Ga0070678_1006243241	3300005456	Miscanthus Rhizosphere	QLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF*
Ga0070672_1006409321	3300005543	Miscanthus Rhizosphere	AFTLGGNAGVVLQMSRNIDMFGQLGLRWVSGMSAVDNLEGTGLETINDKSGRWTMPFLTGVRVRF*
Ga0070665_1003862381	3300005548	Switchgrass Rhizosphere	TLGGNAGVVLQMSRSVDVFGQLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF*
Ga0068864_1026334231	3300005618	Switchgrass Rhizosphere	GGNVGVLFETSPRVGVFGQLGVRWVSGMSAVDDLQGTGLETINDKSARWTVPFLVGVRVGF*
Ga0068866_107564571	3300005718	Miscanthus Rhizosphere	GMSEVDDLVGTGLETINDSSARWTMPFLVGVRVGF*
Ga0068861_1002804222	3300005719	Switchgrass Rhizosphere	QLGLRWVSGMAEIDDLAPTGLGNINDKSSRWTLPFIGGVRVQF*
Ga0068861_1005845552	3300005719	Switchgrass Rhizosphere	VLQMSRNIDMFGQLGLRWVSGMSAVDNLEGTGLETINDKSGRWTMPFLTGVRVRF*
Ga0068861_1010624121	3300005719	Switchgrass Rhizosphere	IGFYGQLGMRYVSGMAEVDDLIGTGLDNINDKSARWTLPFIVGIRYRF*
Ga0068862_1000879971	3300005844	Switchgrass Rhizosphere	LRWVSGMAQIDDLATTGLGNINDKSSRWTMPIIAGIRFAF*
Ga0068862_1001288551	3300005844	Switchgrass Rhizosphere	KLDFFGQVGFRYVTGMAEVDALTGTGLETINDKSARWTFPFVVGIRMRF*
Ga0068871_1002943713	3300006358	Miscanthus Rhizosphere	LAEVDDLVGTGLDTINDKSSRWTIPFLAGVRYRF*
Ga0075428_1013473963	3300006844	Populus Rhizosphere	SGLSEVDDLVGTGLDNINDKSSRWTLPFIGGVRVQF*
Ga0075431_1007389322	3300006847	Populus Rhizosphere	QLGLRYLSGMAEVDDLVGTGLETINDKSSRWTMPFVAGARMRF*
Ga0075420_1001862134	3300006853	Populus Rhizosphere	ATRKAGVFGQVGVRYVTGMSEVDGLAGTGLETINDKSGRWTIPFLFGVRARF*
Ga0105095_105215262	3300009053	Freshwater Sediment	RWMSGMSEIDNLEGTGLETINDNSSRWTMPFIFGVRARF*
Ga0111539_100733985	3300009094	Populus Rhizosphere	VLFQVADKVGVYGQIGLRYVTGMSAVDGLAGTGLETINDKSARWTLPFIGGVRIRF*
Ga0111539_129437002	3300009094	Populus Rhizosphere	IGVRYVSGMAEVDDLVGTGLDNINDKSARWTLPFIAGIRYRF*
Ga0114129_121884262	3300009147	Populus Rhizosphere	GANGGVMFQTGPRFEVFGQLGLRWMSGMAQIDQLIGTGLNDINNKSSRWTLPFVGGVRVRF*
Ga0114129_134331282	3300009147	Populus Rhizosphere	QLGFRRVSGLSQVDDLIGTGLDNINDKSTRWTFPFIVGVRYQF*
Ga0105243_100212311	3300009148	Miscanthus Rhizosphere	FGQLGLRYVSGMTEIDDLVGTGLDNINDKSARWTLPFIVGIRYRF*
Ga0105243_106151621	3300009148	Miscanthus Rhizosphere	LRWVSGMSAVDGLEGTGLETINDKSSRWTFPFIAGVRVQF*
Ga0111538_113192022	3300009156	Populus Rhizosphere	VSGLAEVDDLVGTGLDTMNDKSSRWTVPFLAGVKFGF*
Ga0075423_116038942	3300009162	Populus Rhizosphere	GLSEVDDLVGTGLDTINDKSQRWTLPIIGGIQFRF*
Ga0115028_117882332	3300009179	Wetland	WERVGLFTQLGVRYVTGMSEVDGLAGTGLETINDKSARWTLPFQVGLRARF*
Ga0105249_120268572	3300009553	Switchgrass Rhizosphere	VFGQLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF*
Ga0126306_104959121	3300010166	Serpentine Soil	VTGMSEVDGLVGTGLEEINDSSARWTVPILLGIQARF*
Ga0105239_129481112	3300010375	Corn Rhizosphere	GYFGQLGLRYVSGMTEVDDLVGTGLDNINDKSARWTMPFIVGIHYRF*
Ga0134123_113859602	3300010403	Terrestrial Soil	RWVSGMAPIDSLEGTSLDTINDKSARWTIPFITGVRVQF*
Ga0137455_10948362	3300011429	Soil	DFFAQIGFRYVTGMSDVDNLTGTGLENINDNSARWTFPLVFGIRKRF*
Ga0137452_10655652	3300011441	Soil	YVTGMSDVDNLAGTGLENINDKSARWTFPLVFGIRKRF*
Ga0137437_13477532	3300011442	Soil	VTGMSAVDGLAGTGLETINDKSARWTVPFIGGVRVRF*
Ga0150985_1192952652	3300012212	Avena Fatua Rhizosphere	VGIRWVSGMSAVDDLVGTGLESINDKSARWTLPFLVGVRVRF*
Ga0150985_1226348811	3300012212	Avena Fatua Rhizosphere	TSVFAQMGLRWVSGMAEVDDLVGTGLDNINDKSGRWTVPFLAGIRVGF*
Ga0137435_10071754	3300012232	Soil	TGMSDVDNLTGTGLENINDKSARWTFPLVFGVRKRF*
Ga0150984_1035290991	3300012469	Avena Fatua Rhizosphere	MQLNDRYGAFVQVGLRRMSGMSDVDDLLGTGLETINDNSARWTFPFSLGVRARF*
Ga0150984_1059660533	3300012469	Avena Fatua Rhizosphere	DRVGLFVQMGLRWMTGLAEVDDLVGTGLDTINDKSSRWTVPFLVGVRYRF*
Ga0150984_1082524782	3300012469	Avena Fatua Rhizosphere	MAEVDDLIGTGLEPINDNSSRWTVPFLAGVRVGF*
Ga0150984_1212262901	3300012469	Avena Fatua Rhizosphere	SGLAEVDDLVGTGLDSINDKSSRWTIPFLVGVRYSF*
Ga0157285_103612751	3300012897	Soil	FGVFGQMGLRYVTGMSDVDGLAGTGLEEINDSSARWTLPFLVGVRARF*
Ga0157289_103537892	3300012903	Soil	VLVETSPRVGLFGQIGLRWVSGMTAVDDLEGTGLETINDKSARWTFPFLVGVRVGF*
Ga0157289_103852022	3300012903	Soil	WNAHGRVGIFTQLGLRYVTGLKEVDQTLGTGLEEINDNSARWTIPFVMGVRYGF*
Ga0157301_104688052	3300012911	Soil	GLIVQAGKKFDVFGQVGLRWVSGMSSVDRLEGTGLDTINDNSARWTMPFLTGVRVRF*
Ga0157306_102251412	3300012912	Soil	VFGQLGLRWVSGMSSVDRLEGTGLDTINDKSARWTLPFLAGARLRF*
Ga0163162_106397823	3300013306	Switchgrass Rhizosphere	QLGLRWTSGLAEVDDLVGTGLDTINDKSSRWTIPFLAGVRYRF*
Ga0163162_125978491	3300013306	Switchgrass Rhizosphere	MAEIDDLAGTGLDNINDKSARWTMPFIVGIHYRF*
Ga0163163_130704452	3300014325	Switchgrass Rhizosphere	WTSGLAEVDDLVGTGLESINDKSSRWTIPFLAGVRYRF*
Ga0157380_131687151	3300014326	Switchgrass Rhizosphere	AQIGLRYVTGMTEVDGLVGTGLETINDMSARWSLPILVGARLRF*
Ga0157377_100301581	3300014745	Miscanthus Rhizosphere	VVLQMSSNIDMFGQVGIRWVSGMSAIDNLEGTGLETINDKSGRWTMPFLTGVRVRF*
Ga0180061_10873802	3300014861	Soil	ILPIAEQFGLFGQLGFRYVTGMSEIDDIVGTGLETINDNSSRWTLPLVIGVRARF*
Ga0173483_108612111	3300015077	Soil	QLGLRYVTGMSEVDGLAGTGLEEINDSSARWTLPFLVGVRARF*
Ga0173483_109926162	3300015077	Soil	AAFTLGANAGLIVQAGKKFDVFGQVGLRWVSGMSSVDRLEGTGLDTINDNSARWTMPFLTGVRVRF*
Ga0173480_101642003	3300015200	Soil	GVFGQVGIRYVTGMSEVDGLAGTGLETINDKSGRWTIPFLFGVRARF*
Ga0173478_101304232	3300015201	Soil	QMSSNIDMFGQVGIRWVSGMSAIDNLEGTGLETINDKSGRWTMPFLTGVRVRF*
Ga0132258_107741124	3300015371	Arabidopsis Rhizosphere	YTTGLAEVDNFPGTGLETINDHSSRWTLPFLVGVRVGF*
Ga0132256_1007654353	3300015372	Arabidopsis Rhizosphere	VTGLSAVDNLAGTGLSSINDSSSRWTVPFVIGFRTRF*
Ga0132256_1015632101	3300015372	Arabidopsis Rhizosphere	VFGQLGLRWVSGMSAVDGLAGTGLETINDNSARWTVPFVVGVRARF*
Ga0132255_1019591921	3300015374	Arabidopsis Rhizosphere	MGLRWMTGLAEVDNLVGTGLDTINDKSSRWTVPFLVGVRYSF*
Ga0190266_100996311	3300017965	Soil	RYVSGMSSVDGLAGTGLETINDKSSRWTMPFIAGVRFRF
Ga0190268_116525351	3300018466	Soil	VTGMSEVDDLIGTGLETINDKSSRWTMPFVAGVRFRF
Ga0190270_106119561	3300018469	Soil	KHIGYFGQLGLRYVGGMTEIDDLVGTGLDNINDKSARWTLPVIVGVHYRF
Ga0190270_131412821	3300018469	Soil	SQVGLRWVSGMSAVDGLEGTGLETINDNSARWTLPFLIGVRARF
Ga0190270_131412822	3300018469	Soil	MQLSERVGFFSQVGLRWVSGMSAVDGLEGTGLETINDNSARWTLPFLIGVR
Ga0190270_131516881	3300018469	Soil	TGMADVDQLEDTSLETINDKSARTTFPFLLGVRFGFGN
Ga0190271_111336702	3300018481	Soil	GLRWVSGMSEVDGLTGTGLETINDSSARWTLPFLVGVRARF
Ga0173479_105393811	3300019362	Soil	SGMTEIDDLVGTGLDNINDKSARWTMPFIVGIHYRF
Ga0210379_102859242	3300021081	Groundwater Sediment	GLRYVTGMSEVDGLAGTGLETINDKSARWTVPFLVGVRARF
Ga0207682_103098452	3300025893	Miscanthus Rhizosphere	MSRSVDVFGQLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF
Ga0207688_104796861	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	RRVGGMSAVDNLEGTSLDTINDNSARWTFPVLVGVRLSF
Ga0207643_108843811	3300025908	Miscanthus Rhizosphere	QTAAFTLGGNAGVVLQMSRSVDVFGQLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF
Ga0207690_118705501	3300025932	Corn Rhizosphere	GNAGVVLQMSRSVDVFGQLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF
Ga0207669_110691022	3300025937	Miscanthus Rhizosphere	NTPRFGAFAQVGLRWTSGMAEIDDLEGTGLETINDKSARWTFPFIAGVRVGF
Ga0207669_113089072	3300025937	Miscanthus Rhizosphere	GERIGVFGQVGLRWVSGMSAVDGLAGTGLETINDKSSRWTFPFIAGVRVQF
Ga0207704_118985591	3300025938	Miscanthus Rhizosphere	SGMSAIDNLEGTGLDTINDKSGRWTVPFLTGVRFRF
Ga0207679_102776031	3300025945	Corn Rhizosphere	VQAGKKFDVFGQVGLRWVSGMSSVDRLEGTGLDTINDNSARWTMPFLTGVRVRF
Ga0207651_106908291	3300025960	Switchgrass Rhizosphere	GLRYVSGMAQIDDLVGTGLDNINDKSARWTLPFIVGVRYRF
Ga0207658_117894271	3300025986	Switchgrass Rhizosphere	FAQVGLRWTSGMAEIDDLEGTGLETINDKSARWTFPFIAGVRVGF
Ga0207683_109014343	3300026121	Miscanthus Rhizosphere	QLGVRWVSGMSAIDNLEGTGLDTINDKSGRWTMPFLTGVRVRF
Ga0207580_10080221	3300026829	Soil	QVGLRWVSGMSSVDRLEGTGLDTINDNSARWTMPFLTGVRVRF
Ga0307280_100216731	3300028768	Soil	IGLRFTSGMSEVDGLAGTGLETINDKSSRWTMPFIAGVRFRF
Ga0247824_107916441	3300028809	Soil	FTLGGNGGVVLEMSSNIDMFGQVGLRWVSGMSAIDNLEGTGLETINDKSGRWTVPFLTGVRFRF
Ga0247826_112721451	3300030336	Soil	MSSNIDMFGQAGIRWVSGMSAIDNLEGTGLETINDKSGRWTVPFLTGIRFRF
Ga0310888_100009526	3300031538	Soil	GVMLEMSSNIDVFGQVGLRWVSGMSAIDNLEGTGLDTINDKSQRWTLPIIGGIQFRF
Ga0310887_104646692	3300031547	Soil	RYTSGLAEVDNFPGTGLETINDHSSRWTLPFLVGVRVGF
Ga0307468_1008662011	3300031740	Hardwood Forest Soil	GGLMFQTGERWDVFTQLGFRWMSGMADIDDLEATGLETINDKSSRWTMPLIAGVRFRF
Ga0315290_109575431	3300031834	Sediment	MSGMSAVDGLAGTGLETINDNSSRWTMPIVFGVRARF
Ga0310904_106324032	3300031854	Soil	IFVQAGLRYTTGMSEVDDLVGTGLETINDNSARWTLPILLGGRFRF
Ga0310900_109097022	3300031908	Soil	FAQLGFRYVTGMSEVDDLEGTGLETINDSSSRWTFPLVLGIRARF
Ga0310891_101127211	3300031913	Soil	MFQTGERWDLFTQVGFRWMSGMADIDDLEATGLDTINDKSSRWTMPFIAGIRYRF
Ga0307411_109404191	3300032005	Rhizosphere	FGQMGLRYVTGMSDVDGLAGTGLEEINDSSARWTLPFLVGVRARF
Ga0310902_108398021	3300032012	Soil	DVFGQVGLRWVSGMSAIDNLEGTGLDTINDKSGRWTVPFLTGVRFRF
Ga0315272_106424582	3300032018	Sediment	IGMRWMSGMSAVDGLAGTGLEAINDTSSRWTLPFIIGVRTRF
Ga0310890_104662211	3300032075	Soil	AQIGFRYVTGMSDVDDLTGTGLETINDKSARWTFPFMVGIRKRF
Ga0310890_107733051	3300032075	Soil	LFPVLQNMGIFAQLGFRYVTGMSEVDDLEGTGLETINDSSSRWTFPLVLGIRARF
Ga0310890_110629761	3300032075	Soil	GVFGQLGLRYVTGMSQVDGLAGTGLEDINDNSARWTLPFLVGVRARF
Ga0315912_104706721	3300032157	Soil	GLRYVSGMTEIDDLVGTGLDNINDKSARWTLPVIVGVKYRF
Ga0315281_102394071	3300032163	Sediment	LNPRVGVYSQLGLKWVSGMSAVDGLAGTGLESINDNSSRWTVPIVFGVRARF
Ga0310889_105917461	3300032179	Soil	WVSGMSAVDGLAGTGLETINDNSARWTVPFVVGVRARF
Ga0310896_109036351	3300032211	Soil	SGMADIDDLEATGLETINDKSSRWTMPLIAGVRFRF
Ga0315270_110666731	3300032275	Sediment	GQVGLRWVTGLSAVDGLAGTGLEKINDNSSRWTLPIVIGVRARF
Ga0315275_106955662	3300032401	Sediment	SGMSAVDGLAGTGLETINDNSSRWTMPIVFGVRARF
Ga0315273_123152581	3300032516	Sediment	SGMSAVDGLAGTGLETINDNSSRWTMPIVFGVRTRF
Ga0316629_102650311	3300033483	Soil	GLAQIDNLAGTGLETINDNSSRWTLPVMVGMRVRF
Ga0316616_1014840751	3300033521	Soil	VFAQMGFRWVSGMSQIDGLAGTGLETINDKSARWTFPFIAGIRVRF
Ga0316616_1024360381	3300033521	Soil	AQIGLRWTSGLAAIDDLAGTGLETINDNSSRWTMPIVVGMRVRF
Ga0247829_112539861	3300033550	Soil	LRYVTGMSDVDGLAGTGLEEINDSSARWTLPFLVGVRARF
Ga0247830_103962463	3300033551	Soil	LEMSSNIDMFGQAGIRWVSGMSAIDNLEGTGLETINDKSGRWTVPFLTGVRFRF
Ga0364924_118513_63_209	3300033811	Sediment	MGIFGQVGLRWVSGMSAVDGLAGTGLETINDKSARWTFPFIAGIRARF
Ga0314780_206316_323_514	3300034659	Soil	TLGGNGGVVLEMSSNVDMFGQAGIRWVSGMSPVDDLVGTGLESINDKSARWTLPFLVGVRVRF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070184

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences