NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F070068

Metagenome / Metatranscriptome Family F070068

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F070068
Family Type Metagenome / Metatranscriptome
Number of Sequences 123
Average Sequence Length 52 residues
Representative Sequence IAQQYVEAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW
Number of Associated Samples 109
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 2.44 %
% of genes from short scaffolds (< 2000 bps) 2.44 %
Associated GOLD sequencing projects 106
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.512 % of family members)
Environment Ontology (ENVO) Unclassified
(35.772 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.780 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.06%    β-sheet: 0.00%    Coil/Unstructured: 48.94%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF13202EF-hand_5 32.52
PF08281Sigma70_r4_2 3.25
PF00149Metallophos 2.44
PF00903Glyoxalase 1.63
PF08042PqqA 1.63
PF04390LptE 0.81
PF12244DUF3606 0.81
PF13833EF-hand_8 0.81
PF13340DUF4096 0.81
PF13505OMP_b-brl 0.81
PF02632BioY 0.81
PF02518HATPase_c 0.81
PF01872RibD_C 0.81
PF00239Resolvase 0.81
PF02195ParBc 0.81
PF01494FAD_binding_3 0.81
PF00027cNMP_binding 0.81
PF01042Ribonuc_L-PSP 0.81
PF04392ABC_sub_bind 0.81
PF13561adh_short_C2 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.63
COG0251Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 familyDefense mechanisms [V] 0.81
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.81
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.81
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.81
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.81
COG1268Biotin transporter BioYCoenzyme transport and metabolism [H] 0.81
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.81
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.81
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.81
COG2980Outer membrane lipoprotein LptE/RlpB (LPS assembly)Cell wall/membrane/envelope biogenesis [M] 0.81
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.81


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005093|Ga0062594_101059259Not Available787Open in IMG/M
3300012951|Ga0164300_10233573Not Available923Open in IMG/M
3300019885|Ga0193747_1052879Not Available1008Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.51%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere8.94%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.13%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.06%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.06%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.25%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.25%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.44%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere2.44%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.44%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.44%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.44%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.44%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.63%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.63%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.63%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.81%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.81%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.81%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.81%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.81%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.81%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.81%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.81%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459019Litter degradation MG4EngineeredOpen in IMG/M
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002244Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1Host-AssociatedOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300004801Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010868Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012882Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2EnvironmentalOpen in IMG/M
3300012939Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018066Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300019878Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300020000Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300023069Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028712Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139EnvironmentalOpen in IMG/M
3300028717Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158EnvironmentalOpen in IMG/M
3300028720Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028803Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120EnvironmentalOpen in IMG/M
3300028810Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028875Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031124Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
4MG_013515302170459019Switchgrass, Maize And Mischanthus LitterIDVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW
ICChiseqgaiiFebDRAFT_1324488313300000363SoilPNCRALSDIAKRYIAAGGLKQSAPCVADRIAEGAHAKAWMALAVSKTGDPNLVIW*
JGI10214J12806_1012638513300000891SoilSAGGLKDNAPARADRIAERARARAWMALAISKTGDPHLSIW*
JGI11615J12901_1182932023300000953SoilQNCRSLGRIAQQYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW*
JGI1027J12803_10795386543300000955SoilSTYETSENCQSLRTIAKQYIEAGGLKQSAPCRADRIAEAARARAWMALAVSKSGDKQLMIW*
JGI24742J22300_1000954343300002244Corn, Switchgrass And Miscanthus RhizosphereRIAQQYVEAGGLKESAPCRADRIAESARARAWMALAVSKSGDPGLSIW*
Ga0062589_10055535913300004156SoilKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW
Ga0062591_10053137033300004643SoilRIAQQYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLTIW*
Ga0058860_1183805413300004801Host-AssociatedAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW*
Ga0062594_10105925913300005093SoilKYDTSPNCRALSDIAKRYIAAGGLKQSAPCTADRIAEGAHAKAWMALAVSKTGDPNLVIW
Ga0062594_10305721823300005093SoilDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLTIW*
Ga0062594_10334064213300005093SoilFRILITAPCVADGIAEGAHAKAWMALAVSKTGDPNLVIW*
Ga0070690_10123642623300005330Switchgrass RhizosphereVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW*
Ga0070691_1005061443300005341Corn, Switchgrass And Miscanthus RhizosphereLGRIAQQYVEAGGLKESAPCRADRIAESARARAWMALAVSKSGDPGLSIW*
Ga0070668_10057628013300005347Switchgrass RhizosphereGGLKQSAPCTADRIAEGAHAKAWMALAVSKTGDPILMIW*
Ga0070671_10029430213300005355Switchgrass RhizosphereEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW*
Ga0070673_10201090313300005364Switchgrass RhizosphereIDVRDKTSKYETSPNCRSLSEIAKRYVAAGGLKQSAPCAADRIAEGAHAKAWMALAISKTGDPNLVIW*
Ga0070667_10059928623300005367Switchgrass RhizosphereNRCVIDVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW*
Ga0070711_10027605513300005439Corn, Switchgrass And Miscanthus RhizosphereCVIDVRDKGYKYETSENCRSLGEIAKRYIAAGGLKESALCRADRLAESARARAWMAVAVFKSGDPNLTVW*
Ga0070662_10077626213300005457Corn RhizosphereSEIAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLVIW*
Ga0070665_10165336013300005548Switchgrass RhizosphereVIDVRDKGYRYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW*
Ga0068852_10034738213300005616Corn RhizosphereKYETSPNCRSLGRIAQQYVEAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW
Ga0068859_10283623813300005617Switchgrass RhizosphereCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW*
Ga0068864_10034679713300005618Switchgrass RhizosphereAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLVIW*
Ga0066905_10031721013300005713Tropical Forest SoilVAKQYIDAGGFKDSAACPADRIAESARARAWMAMSFSKAGDANLNIW*
Ga0068851_1003954013300005834Corn RhizosphereAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW*
Ga0070717_1205949513300006028Corn, Switchgrass And Miscanthus RhizosphereGGLKDSAPSRADRIAESARARAWMALAISKTGDPRLSIW*
Ga0066652_10111856123300006046SoilSQHCRSLGRVAQRYIEAGGFKDSTPSRADRIAESARARAWMALAISKTGDPRLTIW*
Ga0075417_1073347413300006049Populus RhizosphereYESSQYCRALTKPAHQYIDAGGLREDAGCRADRIAENARARAWMALAVSKSGDPRLSIW*
Ga0074048_1347663213300006581SoilETSPNCRSLGRIAQQYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLTIW*
Ga0075428_10205310813300006844Populus RhizosphereMGKVAKQYIDAGGFKDSAACRADRIAESARARAWMAMAFSKAGDPNLNIW*
Ga0075421_10114733123300006845Populus RhizosphereRMAKQYIEAGGLKQSAPCRADRVAESARARTWMALAISKSGDRQLAIW*
Ga0075430_10163648813300006846Populus RhizosphereTSDNCRSLGPIAKQYTAAGGLKQSAPCRADRVAEGARARAWMALAVSKSGDPKLMIW*
Ga0075430_10178251313300006846Populus RhizosphereCRSLGRIAQQYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW*
Ga0075431_10199324523300006847Populus RhizosphereCRSMGKVAKQYIDAGGFKDSAACRADRIAESARARAWMAMAFSKAGDPNLNIW*
Ga0075434_10222453223300006871Populus RhizosphereQYVEAGGLKESAPCRADRIAESARARAWMALAVSKSGDPGLSIW*
Ga0105251_1060410713300009011Switchgrass RhizosphereDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW*
Ga0111539_1018486313300009094Populus RhizosphereETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW*
Ga0105245_1148285613300009098Miscanthus RhizosphereIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW*
Ga0111538_1051388313300009156Populus RhizosphereKYETSENCRSLGEIAKEYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPT*
Ga0075423_1146135823300009162Populus RhizosphereSPNCRSLGRIAQQYIDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLTIW*
Ga0105242_1264235713300009176Miscanthus RhizosphereNRCVIDVRDKGEKYETSENCRSLGKIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTIW*
Ga0105248_1325384413300009177Switchgrass RhizosphereRYIAAGGLKQSAPCTADRIAEGAHAKAWMALAVSKTGDPNLVIW*
Ga0105249_1338245823300009553Switchgrass RhizosphereAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDRNLVIW*
Ga0126313_1090481013300009840Serpentine SoilNCRSLGRIAQQYVEAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW*
Ga0126382_1022830033300010047Tropical Forest SoilRDKTSTYETSDNCQSLRTIAKQYIEAGGLKQSAPCRADRIAEAARARAWMALAVSKSGDKQLMIW*
Ga0134063_1056869813300010335Grasslands SoilHSTKYENSQHCRSLGRVAQRYIEAGGFKDSTPSRADRIAESARARAWMALAISKTGDPRLTIW*
Ga0134127_1165088813300010399Terrestrial SoilKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMIW*
Ga0124844_116861313300010868Tropical Forest SoilRPIAKQYIEAGGLKQSAPCRADRIAEAARARAWMALAVSKSGDKQLTIW*
Ga0150985_10876794713300012212Avena Fatua RhizosphereSDIAKRYIAAGGLKQSAPCVADRIAEGAHAKAWMALAVSKTGDPNLVIW*
Ga0150985_11998624223300012212Avena Fatua RhizosphereALSDIAKRYIAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLMIW*
Ga0150985_12175314133300012212Avena Fatua RhizosphereLSDIAKRYIAAGGLKQSAPCVADRIAEGAHAKAWMALAVSKTGDPNLVIGRKESSLEGRS
Ga0157304_110096713300012882SoilVIDVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPT
Ga0162650_10009985713300012939SoilVEAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW*
Ga0164300_1023357333300012951SoilIAQQYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW*
Ga0164302_1138504113300012961SoilSLSEIAKRYVAAGGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMIW*
Ga0164302_1182722213300012961SoilVIDVRDKTSKYDTSPNCRALSDIAKRYIAAGGLKQSAPCTADRIAEGAHAKAWMALAVSKTGDPNLVIW*
Ga0157378_1145056113300013297Miscanthus RhizosphereKTSKYETSSNCRSLSEIAKRYVAAGGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMIW*
Ga0157375_1219374313300013308Miscanthus RhizosphereLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW*
Ga0157375_1318059513300013308Miscanthus RhizosphereCVIDVRDKGDKYETSENCRSLSEIAKQYVAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTV*
Ga0157380_1342075123300014326Switchgrass RhizosphereLKQSAPCVADRIAEGAHAKAWMALAISKSGDPNLMIW*
Ga0157379_1001928413300014968Switchgrass RhizosphereYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLTIW*
Ga0157379_1215245323300014968Switchgrass RhizosphereCRSLGRIAQQYIDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW*
Ga0132258_1218143143300015371Arabidopsis RhizosphereDKGDKYETSENCRSLGKIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPTLTVW*
Ga0132256_10302982123300015372Arabidopsis RhizosphereSQNCRSLGRIAQQYIDAGGLKDSAACRADRIAEAARARAWMALAVSKSGDPGLTIW*
Ga0132255_10228502413300015374Arabidopsis RhizosphereKDSAARRADRIAEAARARAWMALAVSKSGDPGLTIW*
Ga0132255_10440501513300015374Arabidopsis RhizosphereVKYEDSENCRSLGRIAHQYISAGGLKDSAPFRADRIAESARAKAWMALAI
Ga0163161_1089958513300017792Switchgrass RhizosphereRILITAPCVADGIAEGAHAKAWMALAVSKTGDPNLVIW
Ga0184605_1013003513300018027Groundwater SedimentMIDVRDKTSKYETSPNSRSLSEIAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLMIW
Ga0184634_1004521843300018031Groundwater SedimentRIAQQYVEAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW
Ga0184617_120300733300018066Groundwater SedimentAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLMIW
Ga0184624_1006103313300018073Groundwater SedimentYETSSNCRSLSEIAKRYVAAGGLKQSAPCTADRIAEGAHAKARMALAISKTGDPNLMIW
Ga0184640_1039495213300018074Groundwater SedimentSAIAKRYIAAGGLKQSAPCVADRIAEAAHAKAWMALAISKTGHPNLMIW
Ga0190271_1310983713300018481SoilGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMIW
Ga0193701_104183213300019875SoilGGLKDSAACRADRIAEAARARAWMALAVSKSGDPGLTIW
Ga0193715_104416433300019878SoilLGRIAQQYIDAGGLKDSAPCRADRIAEAARARAWMALAVSKSGDPGLTIW
Ga0193747_105287913300019885SoilGRIAQQYIEAGGLKDSAACRADRIAEAARARAWMALAVSKSGDPGLTIW
Ga0193692_103947213300020000SoilETSQNCRSLGRIAQQYIEAGGLKDSAACRADRIAEAARARAWMALAVSKSGDPGLTIW
Ga0210381_1039947923300021078Groundwater SedimentIAQQYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW
Ga0247751_111093413300023069SoilETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW
Ga0207699_1050596013300025906Corn, Switchgrass And Miscanthus RhizosphereVEAGGLKESAPCRADRIAESARARAWMALAVSKSGDPGLSIW
Ga0207681_1120746923300025923Switchgrass RhizosphereKRYVEAGGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMIW
Ga0207701_1119375923300025930Corn, Switchgrass And Miscanthus RhizosphereVAAGGLKQSAPCVADRIAEGAHAKAWMALAVSKTGDPNLVIW
Ga0207644_1022840523300025931Switchgrass RhizosphereLSAAANRCVIDVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW
Ga0207644_1069494333300025931Switchgrass RhizosphereYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW
Ga0207644_1114682513300025931Switchgrass RhizosphereSAAVNRCVIDVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPT
Ga0207679_1027470713300025945Corn RhizosphereRCVIDVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW
Ga0207679_1030879743300025945Corn RhizosphereNCRSLGRIAQQYVEAGGLKESAPCRADRIAESARARAWMALAVSKSGDPGLSIW
Ga0207668_1040271313300025972Switchgrass RhizosphereYETSSNCRSLSEIAKRYVAAGGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMIW
Ga0207668_1086853033300025972Switchgrass RhizosphereAAGGLKQSAPCAADRIAEGAHAKAWMALAISKTGDPNLVIW
Ga0207703_1225212913300026035Switchgrass RhizosphereAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW
Ga0207648_1144658233300026089Miscanthus RhizosphereETSSNCRSLSEIAKRYVAAGGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLVIW
Ga0207675_10177296013300026118Switchgrass RhizosphereVRDKTSKYETSQNCRSLGRIAQQYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW
Ga0268265_1156882223300028380Switchgrass RhizosphereLSDIAKRYIAAGGLKQSAPCVADRIAEGAHAKAWMALAVSKTGDPNLVIW
Ga0307285_1005155513300028712SoilVIDVRDKTSKYETSPNSRSLSEIAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLVIW
Ga0307298_1010741513300028717SoilRSLGRIALQYIDAGGLKDSTACRADRIAEAARARAWMALAVSKSGDPGLTIW
Ga0307317_1015470123300028720SoilVIDVRDKTSKYETSPNSRSLSEIAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGHPNLMIW
Ga0307306_1007447533300028782SoilVNASLSGCVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLMIW
Ga0307503_1071117313300028802SoilSKYETSSNCRSLSEIAKRYVAAGGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMI
Ga0307281_1027724413300028803SoilRYVAAGGLKQSAPCTADRIAEGAHAKAWMALAISKTGDPNLMIW
Ga0307294_1009465413300028810SoilMADRDKTSKYETSPNCRALSEIAKRYVAAGGLKQSAPCLADRIAEGARAKAWMALAVSRTGDPNLMIW
Ga0307292_1004227643300028811SoilGLKDSAACRADRIAEAARARAWMALAVSKSGDPGLTIW
Ga0307310_1029655613300028824SoilKTAKYETSPNCRALSEIAKRYVAAGGLKQSAPCLADRIAEGARAKAWMALAVSRTGDPNLMIW
Ga0307312_1111051823300028828SoilKRYIAAGGLKQSAPCVADRIAEGAHAKAWMALAVSKTGDPNLVIW
Ga0307289_1047352223300028875SoilGCRLSPNSRSLSEIAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGHPNLMIW
Ga0307286_1007218923300028876SoilMDLAVNRSVCRSLSEIAKRYVEAGGLKQSAPCRADRVAENARARAWMALAVLKSGAPNLVIW
Ga0307286_1008707913300028876SoilPNCRSLSEIAKRYVAAGGLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLVIW
Ga0308189_1024163823300031058SoilKESAPCRADRIAEAARARAWMALAVSKSGVPGLSIW
Ga0308151_102968223300031124SoilGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW
Ga0170824_11347013513300031231Forest SoilLGRIAQQYVEAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW
Ga0170819_1099223413300031469Forest SoilLGRIAQQYVEAGGLKESAPCRADRIAESARARAWMALAVSKSGDPGLSIW
Ga0310886_1101400323300031562SoilIAQQYVEAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLSIW
Ga0307468_10114264913300031740Hardwood Forest SoilVRDKTSKYETSPNCRSLGRIAQQYIDAGGLKESAPCRADRIAEAARARAWMAMAVSKSGDPGLTIW
Ga0318502_1102214513300031747SoilAGGFKDSAPSRADRIAESARARAWMALAISKTGDRRLSIW
Ga0318537_1008338433300031763SoilYVEAGGFKDSAPSRADRIAESARARAWMALAISKTGDRRLSIW
Ga0310907_1085627513300031847SoilYETSQNCRSLGRIAQPYVDAGGLKESAPCRADRIAEAARARAWMALAVSKSGDPGLAIW
Ga0310904_1106995213300031854SoilNRCVIDVRDKGDKYETSENCRSLGEIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW
Ga0310884_1058931123300031944SoilKESAPCRADRIAESARARAWMALAVSKSGDPGLSIW
Ga0306922_1006257413300032001SoilCRSPSRIAQHYVEAGGFKDSAPSRADRIAESARARAWMALAISKTGDRRLSIW
Ga0310906_1071306513300032013SoilETSENCRSLGKIAKQYIAAGGLKESAPCRADRLAESARARAWMAVAVSKSGDPNLTVW
Ga0318533_1002023713300032059SoilSLSRIAQRYVEAGGFKDSAPSRADRIAESARARAWMALAISKTGDRRLSIW
Ga0318519_1103782313300033290SoilFKDSAPSRADRIAESARARAWMALAISKTGDRRLSIW
Ga0364933_194254_2_1153300034150SedimentLKQSAPCVADRIAEGAHAKAWMALAISKTGDPNLMIW


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