Metagenome Family F070063

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070063
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	44 residues
Representative Sequence	DDNEKVAGPPEMEFSFNVGVQFGLTDATSDTALKFQGSLSF
Number of Associated Samples	110
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.69 %
% of genes near scaffold ends (potentially truncated)	94.31 %
% of genes from short scaffolds (< 2000 bps)	86.99 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (86.992 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.195 % of family members)
Environment Ontology (ENVO)	Unclassified (29.268 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.772 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1ICCgaii200_06251482 2AP72_2010_repI_A10DRAFT_10298432 3JGI11643J11755_116922961 4JGI10214J12806_113387102 5AP72_2010_repI_A001DRAFT_10142721 6Ga0055445_103314731 7Ga0055483_102089911 8Ga0062589_1007602231 9Ga0062595_1000743664 10Ga0062594_1029898382 11Ga0066388_1054819141 12Ga0066388_1062927501 13Ga0066388_1071680351 14Ga0070689_1003717941 15Ga0070689_1006990391 16Ga0070713_1013012091 17Ga0068853_1013313932 18Ga0070693_1016408162 19Ga0070740_102804762 20Ga0070702_1001736423 21Ga0068852_1014615931 22Ga0068861_1021108622 23Ga0066903_1009245981 24Ga0066903_1045017531 25Ga0066903_1070541622 26Ga0066903_1075828701 27Ga0066903_1080513532 28Ga0068870_110929741 29Ga0068870_114463002 30Ga0068860_1018446461 31Ga0075526_10072152 32Ga0075430_1004728682 33Ga0075430_1005165962 34Ga0075429_1019521951 35Ga0075426_103093301 36Ga0075424_1003735354 37Ga0079219_111847232 38Ga0079219_120153371 39Ga0075419_101423911 40Ga0075435_1002365062 41Ga0075435_1011953162 42Ga0105098_105663071 43Ga0105250_100189836 44Ga0105245_113249172 45Ga0075418_101747785 46Ga0105091_101946241 47Ga0105092_101533251 48Ga0114925_100285624 49Ga0116151_104564901 50Ga0114923_110799552 51Ga0126374_102124242 52Ga0105070_10977651 53Ga0126377_129842302 54Ga0134124_127293421 55Ga0134122_116724761 56Ga0134123_125712191 57Ga0157309_102798801 58Ga0157299_102085991 59Ga0157288_100086473 60Ga0157286_100514411 61Ga0126375_103207053 62Ga0164300_111481481 63Ga0164299_106109322 64Ga0164299_106116931 65Ga0153916_121298051 66Ga0164307_100090898 67Ga0164307_117759852 68Ga0164305_103299961 69Ga0157378_100757571 70Ga0163162_129522162 71Ga0157372_115514341 72Ga0075343_10959321 73Ga0075342_10854292 74Ga0075352_10849592 75Ga0163163_110484583 76Ga0157377_103584971 77Ga0132258_134910323 78Ga0184626_102403961 79Ga0190272_115250752 80Ga0190273_117230181 81Ga0187893_105313972 82Ga0255046_100639193 83Ga0209642_103360261 84Ga0209324_100319031 85Ga0207656_102079412 86Ga0208078_10444712 87Ga0210140_11082882 88Ga0207707_115810051 89Ga0207700_115735081 90Ga0207704_119105221 91Ga0207691_115378731 92Ga0207679_118134681 93Ga0207667_103390921 94Ga0207651_101963181 95Ga0207712_100281761 96Ga0207703_113181602 97Ga0207639_100289959 98Ga0207708_100771043 99Ga0209842_10627191 100Ga0209581_11806702 101Ga0209703_12575271 102Ga0209073_103392071 103Ga0255058_103918852 104Ga0209481_102626982 105Ga0268266_100875521 106Ga0302172_101192551 107Ga0299907_103088021 108Ga0268386_100136987 109Ga0307497_101395461 110Ga0302323_1002259631 111Ga0307380_102093811 112Ga0307436_11211272 113Ga0307379_103258241 114Ga0307378_105185062 115Ga0307377_104483382 116Ga0318502_104980742 117Ga0310907_104040762 118Ga0302322_1034631922 119Ga0310897_103806582 120Ga0318549_100773351 121Ga0306924_119256572 122Ga0316197_101533372 123Ga0315273_131904972
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1ICCgaii200_06251482 2AP72_2010_repI_A10DRAFT_10298432 3JGI11643J11755_116922961 4JGI10214J12806_113387102 5AP72_2010_repI_A001DRAFT_10142721 6Ga0055445_103314731 7Ga0055483_102089911 8Ga0062589_1007602231 9Ga0062594_1029898382 10Ga0066388_1054819141 11Ga0066388_1071680351 12Ga0070689_1003717941 13Ga0070689_1006990391 14Ga0070740_102804762 15Ga0066903_1045017531 16Ga0066903_1070541622 17Ga0075435_1002365062 18Ga0075435_1011953162 19Ga0105098_105663071 20Ga0105250_100189836 21Ga0105091_101946241 22Ga0105092_101533251 23Ga0116151_104564901 24Ga0114923_110799552 25Ga0134124_127293421 26Ga0134122_116724761 27Ga0164299_106116931 28Ga0164307_117759852 29Ga0075343_10959321 30Ga0075342_10854292 31Ga0132258_134910323 32Ga0190273_117230181 33Ga0187893_105313972 34Ga0255046_100639193 35Ga0209324_100319031 36Ga0208078_10444712 37Ga0210140_11082882 38Ga0207651_101963181 39Ga0209842_10627191 40Ga0209073_103392071 41Ga0299907_103088021 42Ga0302323_1002259631 43Ga0307379_103258241 44Ga0307378_105185062 45Ga0318549_100773351 46Ga0306924_119256572 47Ga0315273_131904972
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40. 1Ga0157372_115514341 2ICCgaii200_06251482 3JGI10214J12806_113387102 4AP72_2010_repI_A001DRAFT_10142721 5Ga0055445_103314731 6Ga0055483_102089911 7Ga0062595_1000743664 8Ga0066388_1054819141 9Ga0066388_1071680351 10Ga0070689_1006990391 11Ga0070740_102804762 12Ga0066903_1045017531 13Ga0066903_1070541622 14Ga0066903_1075828701 15Ga0075526_10072152 16Ga0075435_1002365062 17Ga0105098_105663071 18Ga0105091_101946241 19Ga0105092_101533251 20Ga0114925_100285624 21Ga0116151_104564901 22Ga0114923_110799552 23Ga0126374_102124242 24Ga0126377_129842302 25Ga0134124_127293421 26Ga0134122_116724761 27Ga0164299_106116931 28Ga0164307_100090898 29Ga0164307_117759852 30Ga0075343_10959321 31Ga0075342_10854292 32Ga0075352_10849592 33Ga0132258_134910323 34Ga0184626_102403961 35Ga0190272_115250752 36Ga0187893_105313972 37Ga0255046_100639193 38Ga0209324_100319031 39Ga0208078_10444712 40Ga0209842_10627191 41Ga0209703_12575271 42Ga0209073_103392071 43Ga0299907_103088021 44Ga0307497_101395461 45Ga0302323_1002259631 46Ga0307380_102093811 47Ga0307436_11211272 48Ga0307379_103258241 49Ga0307378_105185062 50Ga0318502_104980742 51Ga0310907_104040762 52Ga0318549_100773351 53Ga0306924_119256572 54Ga0316197_101533372 55Ga0315273_131904972
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF12706	Lactamase_B_2	34.96
PF13537	GATase_7	3.25
PF01569	PAP2	2.44
PF13522	GATase_6	2.44
PF00196	GerE	1.63
PF02239	Cytochrom_D1	1.63
PF01641	SelR	1.63
PF04966	OprB	1.63
PF03734	YkuD	1.63
PF13411	MerR_1	0.81

Showing 1 to 10 of 22 entries

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COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	1.63
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.63
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	1.63
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.63
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.81
COG0214	Pyridoxal 5'-phosphate synthase subunit PdxS	Coenzyme transport and metabolism [H]	0.81
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.81
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.81
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.81
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.81

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.99 %
Unclassified	root	N/A	13.01 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.99 %
Unclassified	root	N/A	13.01 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.99 %
Unclassified	root	N/A	13.01 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	76.42 %
Unclassified	root	N/A	13.01 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	3.25 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	75.61 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3.25 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Unclassified	root	N/A	13.01 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3.25 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	63.41 %
Parvularculales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Parvularculales	0.81 %
Unclassified	root	N/A	13.01 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3.25 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	29.27 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.81 %
Parvularculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Parvularculales → Parvularculaceae	0.81 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	13.01 %
Unclassified	root	N/A	13.01 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.81 %

Name	Rank	Taxonomy	Distribution
Aquisalinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Parvularculales → Parvularculaceae → Aquisalinus	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3.25 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	17.89 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	13.01 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	8.94 %
Unclassified	root	N/A	13.01 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Aquisalinus flavus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Parvularculales → Parvularculaceae → Aquisalinus → Aquisalinus flavus	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	3.25 %
Bauldia litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → Bauldia litoralis	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Hyphomicrobium denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	17.89 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	13.01 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	4.07 %
Methyloceanibacter marginalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	2.44 %
Methyloceanibacter superfactus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	2.44 %
Unclassified	root	N/A	13.01 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300024519\|Ga0255046_10063919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1483	Open in IMG/M
(restricted) 3300027872\|Ga0255058_10391885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	674	Open in IMG/M
2228664021\|ICCgaii200_c0625148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium denitrificans	839	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1029843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700	Open in IMG/M
3300000787\|JGI11643J11755_11692296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	699	Open in IMG/M
3300000891\|JGI10214J12806_11338710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	601	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1014272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1337	Open in IMG/M
3300004003\|Ga0055445_10331473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	529	Open in IMG/M
3300004063\|Ga0055483_10208991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	635	Open in IMG/M
3300004156\|Ga0062589_100760223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter superfactus	871	Open in IMG/M

Showing 1 to 10 of 118 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.81%
Environmental	Environmental	71.54%
Host-Associated	Host-Associated	27.64%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	13.01%
Plants	Host-Associated → Plants	27.64%
Terrestrial	Environmental → Terrestrial	58.54%
Wastewater	Engineered → Wastewater	0.81%

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.81%
Cave	Environmental → Terrestrial → Cave	0.81%
Freshwater	Environmental → Aquatic → Freshwater	4.88%
Marine	Environmental → Aquatic → Marine	7.32%
Peat	Environmental → Terrestrial → Peat	2.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.26%
Roots	Host-Associated → Plants → Roots	0.81%
Sediment	Environmental → Aquatic → Sediment	0.81%
Soil	Environmental → Terrestrial → Soil	55.28%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	3.25%
Coastal	Environmental → Aquatic → Marine → Coastal	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.76%
Gulf	Environmental → Aquatic → Marine → Gulf	0.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.81%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Loam	Environmental → Terrestrial → Soil → Loam	13.82%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.63%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Sand	Environmental → Terrestrial → Soil → Sand	1.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.25%
Strait	Environmental → Aquatic → Marine → Strait	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.81%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.81%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.06%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.44%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.63%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.81%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.76%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.25%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	3.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.44%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.81%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.44%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.06%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.06%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.63%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.25%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.81%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.44%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.13%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.81%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.81%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.20%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.44%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.44%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004003	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWA_D1	Environmental	Open in IMG/M
3300004063	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M

Showing 1 to 10 of 110 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_06251482	2228664021	Soil	NAPEPAGTEFSMNIGYQFGLTDVTSDGALKLQGSLAF
AP72_2010_repI_A10DRAFT_10298432	3300000651	Forest Soil	AAGSPNLELSFNVGVQFGLTDATSDGALKFQGTFSW*
JGI11643J11755_116922961	3300000787	Soil	EGDEEEVKGDKDNDKASGPSEMQLSFNIGLQFGVTDATSDTALKFQGSLSF*
JGI10214J12806_113387102	3300000891	Soil	VPAGMELTFNLGVQFGLTDATSDTALKFQGSLSF*
AP72_2010_repI_A001DRAFT_10142721	3300000893	Forest Soil	GPTLFWKPVGGEDEAKNEGGENDNRAAGSPNLELSFNVGVQFGLTDATSDGALKFQGTFSW*
Ga0055445_103314731	3300004003	Natural And Restored Wetlands	GGEGDADEDDVASAPEMELYLNVGLQFGLTDATSDTALKFQGSLQF*
Ga0055483_102089911	3300004063	Natural And Restored Wetlands	ADEGDADGAQGTSLSLNVGVQFGLTDATSDTALKFQGSLQF*
Ga0062589_1007602231	3300004156	Soil	KKSDDNEKVAGPPEMEFSFNVGVQFGLTDATSDTALKFQGSLSF*
Ga0062595_1000743664	3300004479	Soil	MYQTTGKDNDKASGPSEMQLSFNIGLQFGLMDATSDTALKFQGSLSF*
Ga0062594_1029898382	3300005093	Soil	EAKGGDEDEDNNKVPGPPNLELSFNVGVQFGLTDVTSDGALKFQGSLAW*
Ga0066388_1054819141	3300005332	Tropical Forest Soil	AEGGNDDRVAGPAQMAFSMNLGVQFGLTDATSDTALKLQGSLSF*
Ga0066388_1062927501	3300005332	Tropical Forest Soil	GKEDNDNEKVAGTPEMELSFNVGVQFGLTDATSDAALKFQGTISF*
Ga0066388_1071680351	3300005332	Tropical Forest Soil	AGGDEDENEAKSPAPLELSFNVGVQFGLTDATSDTTLKFQGSLSF*
Ga0070689_1003717941	3300005340	Switchgrass Rhizosphere	GGDDDDKATEAPAMKFSLNVGVQFGLTDATSDTALKFQGSLSF*
Ga0070689_1006990391	3300005340	Switchgrass Rhizosphere	GGEGDDDDENNKKASGPAEMEFSFNVGVQFGLTDVTSDTALKFQGSLSF*
Ga0070713_1013012091	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EEEAKGDNDNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF*
Ga0068853_1013313932	3300005539	Corn Rhizosphere	GDDDEAEGEGKKKGGDDDDKATEAPAMKFSLNVGVQFGLTDATSDTALKFQGSLSF*
Ga0070693_1016408162	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	KKGGDDDDKATEAPAMEFSLNVGLQFGLTDATSDTALKFQGSLSF*
Ga0070740_102804762	3300005607	Surface Soil	TKKQEDVGDAAGGEDEENGTPGPEPLELSFNVGVQFGLTDATSDGALKFQGSLSW*
Ga0070702_1001736423	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	EGEGKKKGGDDDDKATEAPPMKFSLNVGVQFGLTDATSDTALKFQGSLSF*
Ga0068852_1014615931	3300005616	Corn Rhizosphere	NAPEPASTEFSMNVGVQFGLTDATSDTALKFQGSLAF*
Ga0068861_1021108622	3300005719	Switchgrass Rhizosphere	DDDENKKKASGPAEMEFSFNVGVQFGLTDVTSDTALKFQGSLSF*
Ga0066903_1009245981	3300005764	Tropical Forest Soil	EKVAGASEMELSFNVGVQFGLTDATSDTALKFQGTISF*
Ga0066903_1045017531	3300005764	Tropical Forest Soil	AAGPPKMEFSLNVGVQFGLTDATSDTAPKFQGSLSF*
Ga0066903_1070541622	3300005764	Tropical Forest Soil	KEVKQGKEDNDNEKVAGASEMELSFNVGVQFGLTDATSDTALKFQGTFSF*
Ga0066903_1075828701	3300005764	Tropical Forest Soil	ESEEREGKEDNDNEKVAGQPKLELSFNVGVQFGLTDATSDTALKFQGTVSF*
Ga0066903_1080513532	3300005764	Tropical Forest Soil	NDNEKVAGAPEMELSFNVGLQFGLTDATSDTALKFQGSLSF*
Ga0068870_110929741	3300005840	Miscanthus Rhizosphere	NHNPEPAKMEFSMNVGVQFGLTDVTSDSALKFQGSLAF*
Ga0068870_114463002	3300005840	Miscanthus Rhizosphere	GDDDDKATEAPAMEFSLNVGLQFGLTDATSDTALKFQGSLSF*
Ga0068860_1018446461	3300005843	Switchgrass Rhizosphere	ENKKKASGPAEMEFSFNVGVQFGLTDVTSDTALKFQGSLSF*
Ga0075526_10072152	3300006635	Arctic Peat Soil	DDDDERKVGGPPEMEVSFNVGVQFGLTDFTSDTALKFQGSLGF*
Ga0075430_1004728682	3300006846	Populus Rhizosphere	AEAPEMEVSLNVGVQFGLTDATSDTAVKFQGSIGF*
Ga0075430_1005165962	3300006846	Populus Rhizosphere	GSEEEEAKGGDEDEDNNKVPGPPNMELSFNVGVQFGLTDVTSDGALKFQGSLAW*
Ga0075429_1019521951	3300006880	Populus Rhizosphere	APEPAKTEFSMNFGVQFGLTDVTSDGALKFQGSLAF*
Ga0075426_103093301	3300006903	Populus Rhizosphere	VPGPPNMELSFNVGVQFGLTDVTSDGALKFQGSLAW*
Ga0075424_1003735354	3300006904	Populus Rhizosphere	DAAGGDEDENKGPGPAPLELSFNVGVQFGLTDATSDTALKFQGSLSF*
Ga0079219_111847232	3300006954	Agricultural Soil	DEEEAKGDKDNDKASGPSEMQLSFNIGLQFGVTDATSDTALKFQGSLSF*
Ga0079219_120153371	3300006954	Agricultural Soil	EGEEEEAKGDNDNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGLLSF*
Ga0075419_101423911	3300006969	Populus Rhizosphere	EEEAKGGDEDEDNNKVPGPPNMELSFNVGVQSGLTDVTSDGALKFQGSLAW*
Ga0075435_1002365062	3300007076	Populus Rhizosphere	LQGDGDEAEEKGAGPAPLELSLNVGVQFGLTDATSDVALKFQGSLAF*
Ga0075435_1011953162	3300007076	Populus Rhizosphere	NKSQGPAPLELSFNVGVQLGLTDATSDTALKFQGSLSF*
Ga0105098_105663071	3300009081	Freshwater Sediment	NGKFTAEAPEMEVSLNIGVQFGLTDATSDTALKFQGSLAF*
Ga0105250_100189836	3300009092	Switchgrass Rhizosphere	EKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF*
Ga0105245_113249172	3300009098	Miscanthus Rhizosphere	DKDEDNNKVPGPPNMELSFNVGVQFGLTDVTSDGALKFQGSLAW*
Ga0075418_101747785	3300009100	Populus Rhizosphere	GDNDNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF*
Ga0105091_101946241	3300009146	Freshwater Sediment	EEGEGENGDDDDGATEAAEMEFSLNVGVQFGLTDVTSDSALKFQGSLAF*
Ga0105092_101533251	3300009157	Freshwater Sediment	DDENGVAEAPEMEVSLNVGVQFGLTVATSDTAVKFQGSIGF*
Ga0114925_100285624	3300009488	Deep Subsurface	GDDDDEKVGGPPEMELSLNIGVQFGLTDVTSDTALKFQGSLAF*
Ga0116151_104564901	3300009778	Anaerobic Digestor Sludge	DDGDEGELELDDDVVAGPPEMELSFNVGVQFGLTDNTSDSALKFQDSLEF*
Ga0114923_110799552	3300009788	Deep Subsurface	GDDDAVGGEGKGAEDEVAGPRKMEFFLNVGVQFGLTDMTSDTALKFQGSLEF*
Ga0126374_102124242	3300009792	Tropical Forest Soil	EEEEAKAGDEDEDNNKIPGPPNMELSFNVGVQFGLTDVTSDGALKFQGTFSW*
Ga0105070_10977651	3300009815	Groundwater Sand	VGAPPEMEFSLNVGVQFGLTDVTSDTALKFQGTLEF*
Ga0126377_129842302	3300010362	Tropical Forest Soil	GDAAGGDENENKGPGPAPLELSFNVGVQFGLTDATSDTALKFQGSLSF*
Ga0134124_127293421	3300010397	Terrestrial Soil	IGLRLVAGTRAMELSFNVGVQFGLTDATSDTALKIQGSLSF*
Ga0134122_116724761	3300010400	Terrestrial Soil	LFYNPGGYDDEAEGEGKKKGGDDDDKATEAPAMEFSLNVGLQFGLTDATSDTALKFQGSLSF*
Ga0134123_125712191	3300010403	Terrestrial Soil	PEPAKTEFSMNVGVQFGLTDVTSDSALKFQGSLAF*
Ga0157309_102798801	3300012895	Soil	EAKGGDEDEDNNKVRGRPNMELCFNVGVQFGLTDVTSDGALKFQGSLAW*
Ga0157299_102085991	3300012899	Soil	DKDNDKASGPSEMQLSFNIGLQFGVTDATSDTALKFQGSLSF*
Ga0157288_100086473	3300012901	Soil	KGGDEDEDNNKVPGPPNMELSFNVGVQFGLTDVTSDGALKFQGSIAW*
Ga0157286_100514411	3300012908	Soil	VGDAAGGDEEENKGPGPAPLELSFNVGVQFGLTDATSDTALKFQGSLSF*
Ga0126375_103207053	3300012948	Tropical Forest Soil	DKEKVAGAPEMELSFNVGVQFGLTDATSDTALKFQGTVSF*
Ga0164300_111481481	3300012951	Soil	HQAAKAEFSMNVGVQFGLTDATSDTALKFQGSLAF*
Ga0164299_106109322	3300012958	Soil	GEEEEAKGDNDNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF*
Ga0164299_106116931	3300012958	Soil	TGKKHQAAKAEFSMNVGVQFGLTDATSDTALKFQGSLAF*
Ga0153916_121298051	3300012964	Freshwater Wetlands	KGSDDDDKAIEAPDMEFSLNVGVQFGLTDATSDTALKFQGSLSF*
Ga0164307_100090898	3300012987	Soil	EGKEDKDTEKVAGPPKMELSFNVGVQLGLTDATSDAALKFQGSLSF*
Ga0164307_117759852	3300012987	Soil	KAKARGQEQASEPSAMAFSMNVGVQFGLTDATSDTALKFQGSLAF*
Ga0164305_103299961	3300012989	Soil	KDNEKVAGPPKMELSFNVGVQFGLTDATFDAALKFQGSLSF*
Ga0157378_100757571	3300013297	Miscanthus Rhizosphere	ENVGGEGDDDDENNKKASGPAEMEFSFNVGVQFGLTDVTSDTALKFQGSLSF*
Ga0163162_129522162	3300013306	Switchgrass Rhizosphere	DEESEGEGKKKGGDDDDKATEAPAMKFSLNVGVQFGLTDATSDTALKFQGSLSF*
Ga0157372_115514341	3300013307	Corn Rhizosphere	DDNEKVAGPPEMEFSFNVGVQFGLTDATSDTALKFQGSLSF*
Ga0075343_10959321	3300014317	Natural And Restored Wetlands	DVGEDDDDDNGGVTKAPETEFSMNVGLQFGLTDMTSDTAMKFQGSLAF*
Ga0075342_10854292	3300014320	Natural And Restored Wetlands	GKGDDDGDKRVAGPSKMDFSLNVGVQFGLTDLTSDTALKFQGSLAF*
Ga0075352_10849592	3300014324	Natural And Restored Wetlands	KVAGPPDMELSFNVGVQFGLTDATSDGALKFQGSLTW*
Ga0163163_110484583	3300014325	Switchgrass Rhizosphere	GSSEMELSFNIGLQFGLTDATSDTALKFQGSLSF*
Ga0157377_103584971	3300014745	Miscanthus Rhizosphere	NPEPAKMEFSMNVGVQFGLTDVTSDSALRFQGSLAF*
Ga0132258_134910323	3300015371	Arabidopsis Rhizosphere	EKKKEGGGPADMEFSLNVGVQFGLTDATSDTALKFQGELDF*
Ga0184626_102403961	3300018053	Groundwater Sediment	NEKVASPPEMEFSLNVGVQFGLTEVTSDTALKFQGSLAF
Ga0190272_115250752	3300018429	Soil	SGPPEMEFSLNVGVQFGLSDVTSDTALKFQGSLAF
Ga0190273_117230181	3300018920	Soil	KKVGGAPEMEFSLNVGLQFGLTDVTSDTALKFQGTLEF
Ga0187893_105313972	3300019487	Microbial Mat On Rocks	EVEIYDDEQAGGAVAMTFSMNVGVQFGLTDSTSDTALKFQGAVQF
(restricted) Ga0255046_100639193	3300024519	Seawater	NDDDEIAGEPEMEFVFNVGLQFGLTDATSDTALKFQGAMEF
Ga0209642_103360261	3300025167	Soil	GGPPEMEFSMNVGVQFGLTDVTSDTALKFQGTLEF
Ga0209324_100319031	3300025174	Soil	GDDNGNGKGPGDDDDKKKVGGPPEMEFSMNVGVQFGLTDVTSDTALKFQGTLEF
Ga0207656_102079412	3300025321	Corn Rhizosphere	EGEEEAKGDNDNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF
Ga0208078_10444712	3300025544	Arctic Peat Soil	GDDDEKGGGGAETEFSMNIGVQFGLTDATSEGALKVQGSLQF
Ga0210140_11082882	3300025566	Natural And Restored Wetlands	VPGGPVEMEVSFNVGVQFGLTDETSDSALKFQGMLEF
Ga0207707_115810051	3300025912	Corn Rhizosphere	ARCRPNMELCFNVGVQFGLTDVTSDGALKFQGSLAW
Ga0207700_115735081	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	EEEAKGDNDNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF
Ga0207704_119105221	3300025938	Miscanthus Rhizosphere	EDEDNNKVPGPPNLELSFNVGVQFGLTDVTSDGALKFQGSLAW
Ga0207691_115378731	3300025940	Miscanthus Rhizosphere	NNKKASGPAEMEFSFNVGVQFGLTDVTSDTALKFQGSLNF
Ga0207679_118134681	3300025945	Corn Rhizosphere	EGKKKGGDDDDKATEAPAMEFSLNVGLQFGLTDATSDTALKFQGSLSF
Ga0207667_103390921	3300025949	Corn Rhizosphere	EAKGDNDNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF
Ga0207651_101963181	3300025960	Switchgrass Rhizosphere	NKVPGRPNMELCFNVGVQFGLTDVTSDGALKFQGSLAW
Ga0207712_100281761	3300025961	Switchgrass Rhizosphere	DEDEDNNKVPGRPNMELCFNVGVQFGLTDVTSDGALKFQGSLAW
Ga0207703_113181602	3300026035	Switchgrass Rhizosphere	GGEGDDDDENKKKASGPAEMEFSFNVGVQFGLTDVTSDTALKFQGSLSF
Ga0207639_100289959	3300026041	Corn Rhizosphere	NGNEKASGPSEMQLSFNIGLQFGLTDATSDTALKFQGSLSF
Ga0207708_100771043	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	EKDENVGGEGDDDDENNKKASGPAEMEFSFNVGVQFGLTDVTSDTALKFQGSLSF
Ga0209842_10627191	3300027379	Groundwater Sand	DNGNGNGDDDNKIAGPAKVEFSMNVGVQFGLTDLTSDTALKFQGTLEF
Ga0209581_11806702	3300027706	Surface Soil	TKKQEDVGDAAGGEDEENGTPGPEPLELSFNVGVQFGLTDATSDGALKFQGSLSW
Ga0209703_12575271	3300027723	Freshwater Sediment	NGNAPEPAKTEFSMNVGVQFGLTDVTSDGALKFQGSLAF
Ga0209073_103392071	3300027765	Agricultural Soil	EGGDDDKKAAGPPDMELSFNVGVQLGLTDAASDGALKFQGSLSW
(restricted) Ga0255058_103918852	3300027872	Seawater	EIAGEPEMEFVFNVGLQFGLTDATSDTALKFQGGVEF
Ga0209481_102626982	3300027880	Populus Rhizosphere	EEEAKGGDEDEDNNKVPGPPNMELSFNVGVQSGLTDVTSDGALKFQGSLAW
Ga0268266_100875521	3300028379	Switchgrass Rhizosphere	PGRPNMELCFNVGVQFGLTDVTSDGALKFQGSLAW
Ga0302172_101192551	3300030003	Fen	DKVAGPPPLELSFNVGVQFGLTDVTSDTALKFQGELNF
Ga0299907_103088021	3300030006	Soil	DDDDDDNGNRNGNHEVAGPAKPEFSMNVGVQFGLTDFTSETALKFQGALEF
Ga0268386_100136987	3300030619	Soil	DDERKVGGPPEMEVSLNVGVQFGLTDFTSDTALKFQGSLGF
Ga0307497_101395461	3300031226	Soil	SAGGPAAMEFSMNVGVQFGLTDATSDTALKFQGSLAF
Ga0302323_1002259631	3300031232	Fen	NDEDGVGKAEGGDDDKVAGPPPLELSFNVGVQFGLTDVTSDTALKFQGELNF
Ga0307380_102093811	3300031539	Soil	DGDDDDGDNGATKAPEMEFSMNVGLQFGLTDLTSDGAVKFQGSLAF
Ga0307436_11211272	3300031563	Salt Marsh	GEGDADEDDAAGASQASLSLNVGVQFGLTDATSDTALKFQGSFQF
Ga0307379_103258241	3300031565	Soil	GDDDEEDDVAGPPDMEFSLNVGLQFGLTDAASDTALKFQGSLAF
Ga0307378_105185062	3300031566	Soil	GDDDDDDRKVGGPPEIEFSLNVGVQFGLIDVTSDGALKFQGSLAF
Ga0307377_104483382	3300031673	Soil	AVAGPPEMEFSFNVGLQFGLTDATSDTALKFQGSLGF
Ga0318502_104980742	3300031747	Soil	PREGDDEKVAGPPKMELSLNVGVQFGLTDATSDLQLKFQTSLSF
Ga0310907_104040762	3300031847	Soil	SEEEEAKGGDEDEDNNKVPGRPNMELCFNVGVQFGLTDVTSDGALKFQGSLAW
Ga0302322_1034631922	3300031902	Fen	KVAGPPPLELSFNVGVQFGLTDVTSDTALKFQGELNF
Ga0310897_103806582	3300032003	Soil	NNKVPGRPNMELCFNVGVQFGLTDVTSDGALKFQGSLAW
Ga0318549_100773351	3300032041	Soil	ARAGPDALSMNVGYQFGLADATSDSALKFQGSLSF
Ga0306924_119256572	3300032076	Soil	DEKAAGPPATELALNVGVQFGLTDATSDTALKFQGSIGF
Ga0316197_101533372	3300032273	Sediment	DLDEDFVPGGPVEMEMSFNVGVQFGLTDETSDSALKFQGKLEF
Ga0315273_131904972	3300032516	Sediment	DDKESQKSTEFQMNVGVQFGLTELASDAALKVQGALQF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters