Metagenome / Metatranscriptome Family F070024

Basic Information
Family ID	F070024
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	49 residues
Representative Sequence	GCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK
Number of Associated Samples	98
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.56 %
% of genes from short scaffolds (< 2000 bps)	82.93 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (59.350 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (26.016 % of family members)
Environment Ontology (ENVO)	Unclassified (49.593 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (50.407 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1M3P_100040221 2M3P_100091705 3M3P_10147011 4JGI12421J11937_101192712 5NpDRAFT_100164737 6JGI25912J50252_101111171 7JGI25913J50563_10011341 8JGI25925J51416_101387622 9Ga0065166_103109481 10Ga0070374_100070471 11Ga0070374_103177501 12Ga0070374_103473441 13Ga0070374_103771781 14Ga0049083_100784431 15Ga0049081_102534412 16Ga0049081_102928151 17Ga0049080_102405261 18Ga0049085_101475381 19Ga0049082_100240544 20Ga0049084_100055027 21Ga0078894_102862613 22Ga0078894_107115253 23Ga0078894_107284663 24Ga0078894_110447582 25Ga0075471_101866641 26Ga0075464_107521132 27Ga0102861_11726881 28Ga0102873_11918812 29Ga0102875_11785911 30Ga0102877_11495742 31Ga0102877_12382911 32Ga0102879_10884581 33Ga0102880_10855501 34Ga0102881_11824851 35Ga0102916_10195604 36Ga0102920_10961663 37Ga0102920_13021131 38Ga0102921_11307371 39Ga0102921_13363712 40Ga0102923_10574783 41Ga0102897_12268962 42Ga0102878_10539311 43Ga0102878_10561381 44Ga0102856_10934181 45Ga0102876_11257351 46Ga0102855_10700451 47Ga0102824_11251561 48Ga0102867_11210071 49Ga0102867_11516551 50Ga0102867_12078932 51Ga0105737_11778962 52Ga0105739_10420971 53Ga0105746_12271322 54Ga0105747_13526671 55Ga0102904_10737481 56Ga0102922_11155592 57Ga0102893_11436752 58Ga0108970_115448153 59Ga0114351_13735791 60Ga0114354_12774182 61Ga0114354_12774631 62Ga0114336_10057861 63Ga0114336_11211053 64Ga0114968_100180508 65Ga0114977_103721702 66Ga0114981_100120941 67Ga0114966_100526481 68Ga0114969_104937242 69Ga0114971_102295533 70Ga0114983_10972072 71Ga0114958_103221512 72Ga0136551_10124451 73Ga0133913_134456853 74Ga0164294_103943213 75Ga0177922_102402502 76Ga0177922_109469112 77Ga0211736_107269641 78Ga0211735_109204873 79Ga0211735_109220388 80Ga0211729_107842571 81Ga0208599_10512412 82Ga0208598_10362091 83Ga0222712_102932171 84Ga0228702_10097261 85Ga0214921_1000324622 86Ga0214921_1001327211 87Ga0214919_100334991 88Ga0214919_103455953 89Ga0244777_101797311 90Ga0244776_103437693 91Ga0255150_10598451 92Ga0255246_10555892 93Ga0208783_101041973 94Ga0255111_10463083 95Ga0208921_10471961 96Ga0208023_10175971 97Ga0208169_10884002 98Ga0255096_10497241 99Ga0255072_10791401 100Ga0209353_101743661 101Ga0209358_100872591 102Ga0209229_104475811 103Ga0209354_103353732 104Ga0209550_100235501 105Ga0209550_101656701 106Ga0315907_101798201 107Ga0315899_115739151 108Ga0315908_101829284 109Ga0315908_107031823 110Ga0334989_0096818_1444_1635 111Ga0335003_0081932_1_153 112Ga0335004_0131532_3_236 113Ga0334983_0097486_1737_1883 114Ga0334990_0133718_1229_1348 115Ga0334990_0261235_771_932 116Ga0335031_0762620_3_167 117Ga0335035_0712872_307_513 118Ga0335036_0047263_2_142 119Ga0335068_0130200_2_139 120Ga0335053_0030572_3669_3884 121Ga0335058_0017340_1_216 122Ga0335058_0018542_4019_4153 123Ga0335058_0593512_474_620
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1M3P_100040221 2M3P_10147011 3Ga0049082_100240544 4Ga0078894_110447582 5Ga0075464_107521132 6Ga0102861_11726881 7Ga0136551_10124451 8Ga0211735_109204873 9Ga0228702_10097261 10Ga0255150_10598451 11Ga0335004_0131532_3_236 12Ga0335053_0030572_3669_3884
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1M3P_100040221 2M3P_10147011 3Ga0049082_100240544 4Ga0078894_110447582 5Ga0075464_107521132 6Ga0102861_11726881 7Ga0136551_10124451 8Ga0211735_109204873 9Ga0228702_10097261 10Ga0255150_10598451 11Ga0335004_0131532_3_236 12Ga0335053_0030572_3669_3884
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 80.00% β-sheet: 0.00% Coil/Unstructured: 20.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF12802	MarR_2	44.72
PF13463	HTH_27	15.45
PF00072	Response_reg	8.94
PF08521	2CSK_N	7.32
PF00486	Trans_reg_C	5.69
PF03099	BPL_LplA_LipB	2.44
PF00154	RecA	1.63
PF00856	SET	1.63
PF13342	Toprim_Crpt	1.63
PF14497	GST_C_3	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	7.32
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	2.44
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	2.44
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	2.44
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	1.63

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	40.65 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	40.65 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.65 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.02 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	39.02 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	38.21 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	35.77 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
Acidovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	1.63 %
Limnohabitans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans	20.33 %
Unclassified	root	N/A	59.35 %

Name	Rank	Taxonomy	Distribution
Acidovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	1.63 %
Unclassified	root	N/A	59.35 %
unclassified Limnohabitans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans	13.01 %

Name	Rank	Taxonomy	Distribution
Acidovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	1.63 %
Limnohabitans sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp.	8.13 %
Limnohabitans sp. Rim47	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim47	4.88 %
Unclassified	root	N/A	59.35 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000268\|M3P_10004022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim47	5377	Open in IMG/M
3300000268\|M3P_10009170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim47	3613	Open in IMG/M
3300000269\|M3P_1014701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	1008	Open in IMG/M
3300000756\|JGI12421J11937_10119271	Not Available	691	Open in IMG/M
3300000929\|NpDRAFT_10016473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	5117	Open in IMG/M
3300003412\|JGI25912J50252_10111117	Not Available	654	Open in IMG/M
3300003431\|JGI25913J50563_1001134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp.	5407	Open in IMG/M
3300003497\|JGI25925J51416_10138762	Not Available	557	Open in IMG/M
3300004112\|Ga0065166_10310948	Not Available	645	Open in IMG/M
3300005517\|Ga0070374_10007047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	5344	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.37%
Plants	Host-Associated → Plants	0.81%
Terrestrial	Environmental → Terrestrial	0.81%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.81%
Freshwater	Environmental → Aquatic → Freshwater	65.04%
Leaf	Host-Associated → Plants → Leaf	0.81%
Marine	Environmental → Aquatic → Marine	33.33%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	5.69%
Creek	Environmental → Aquatic → Freshwater → Creek	0.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	26.02%
Lake	Environmental → Aquatic → Freshwater → Lake	30.89%
Lentic	Environmental → Aquatic → Freshwater → Lentic	22.76%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.44%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.81%
Pond	Environmental → Aquatic → Freshwater → Pond	0.81%
River	Environmental → Aquatic → Freshwater → River	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.63%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	26.02%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	30.89%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.33%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.69%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.44%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.81%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	26.02%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.81%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.81%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	3.25%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	15.45%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.88%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	4.06%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.25%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.63%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.81%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.81%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.81%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.81%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	13.82%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	6.50%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	5.69%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.06%
Lotic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic	2.44%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	0.81%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000268	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters ver2	Environmental	Open in IMG/M
3300000269	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 7, Mississippi Headwaters	Environmental	Open in IMG/M
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300005580	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF	Environmental	Open in IMG/M

Showing 1 to 10 of 98 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
M3P_100040221	3300000268	Lotic	NLGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK*
M3P_100091705	3300000268	Lotic	GCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
M3P_10147011	3300000269	Lotic	GSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
JGI12421J11937_101192712	3300000756	Freshwater And Sediment	GFGFVAVLLAHENLLENQRVENGASRKLIKDWMLEQYFNSIVLSSK*
NpDRAFT_100164737	3300000929	Freshwater And Marine	GCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
JGI25912J50252_101111171	3300003412	Freshwater Lake	GFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK*
JGI25913J50563_10011341	3300003431	Freshwater Lake	ELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
JGI25925J51416_101387622	3300003497	Freshwater Lake	LLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK*
Ga0065166_103109481	3300004112	Freshwater Lake	GFVAVLVAHENLLENQRFKKGAFRKLIKDWMLEQYCNAIVSPSK*
Ga0070374_100070471	3300005517	Freshwater Lake	VAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSVSK*
Ga0070374_103177501	3300005517	Freshwater Lake	QGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIV*
Ga0070374_103473441	3300005517	Freshwater Lake	GQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYCNGIVSTIQ*
Ga0070374_103771781	3300005517	Freshwater Lake	LGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK*
Ga0049083_100784431	3300005580	Freshwater Lentic	FGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK*
Ga0049081_102534412	3300005581	Freshwater Lentic	GFVAVLFAHENLLENQRVKSFAFRVLIKDWMLEQYCNAIVLASK*
Ga0049081_102928151	3300005581	Freshwater Lentic	VAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
Ga0049080_102405261	3300005582	Freshwater Lentic	AKLFFNLGQGCLQGFGSVAVLLAHENLLGNQRVKNGAFRMLIKDWMLEQYCNGIV*
Ga0049085_101475381	3300005583	Freshwater Lentic	GCLQGFGSVAVLLAHENLLKNQRVKKSAFRMLIKDWMLEQYCKRIVSGSK*
Ga0049082_100240544	3300005584	Freshwater Lentic	NLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
Ga0049084_100055027	3300005585	Freshwater Lentic	GQGCLQGFGSVAVLLAHENLLGNQRVKNGAFRMLIKDWMLEQYCNGIVSASK*
Ga0078894_102862613	3300005662	Freshwater Lake	SVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSVSK*
Ga0078894_107115253	3300005662	Freshwater Lake	FFNLGQGCLQGFGFVAVLVAHENLLENQRVKNDAFRKLIKDWMLEQYFNGIVL*
Ga0078894_107284663	3300005662	Freshwater Lake	FGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK*
Ga0078894_110447582	3300005662	Freshwater Lake	GFGFVAVLIAHENLLENQRFKKGAFRKLIKDWMLEQYCKAIVSIRK*
Ga0075471_101866641	3300006641	Aqueous	GFVAVLVAHRNLHKNQRVEKLAFRKLIKDWMLEQYCNGIVSTSK*
Ga0075464_107521132	3300006805	Aqueous	CLQGFGFIAVWVAHRNLHKNQRVEKLAFRKLIKDWMLKQYCNGIVLSSK*
Ga0102861_11726881	3300007544	Estuarine	HDGAFAKLFFDLGQGCLQGFGFVAVLVAHENLLENQRFKKGAFRKLIKDWMLEQYCNAIVSPSK*
Ga0102873_11918812	3300007545	Estuarine	ELFFNLGQGCLQGFGSVAVLLAHENLLKNQRVKKFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102875_11785911	3300007547	Estuarine	NLLENQRVKKFAFRMLIKDWMLEQYCKAIVSIRK*
Ga0102877_11495742	3300007548	Estuarine	AVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
Ga0102877_12382911	3300007548	Estuarine	VLLAHENLLENQRVKKFAFRMLIKDWMPEQYCKRIVSASK*
Ga0102879_10884581	3300007549	Estuarine	VLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102880_10855501	3300007550	Estuarine	THDGAFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102881_11824851	3300007551	Estuarine	LFFNLGQGCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIV*
Ga0102916_10195604	3300007585	Estuarine	DGAFAKLFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102920_10961663	3300007600	Estuarine	GSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
Ga0102920_13021131	3300007600	Estuarine	GSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSTSK*
Ga0102921_11307371	3300007603	Estuarine	THDGAFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSTSK*
Ga0102921_13363712	3300007603	Estuarine	VLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK*
Ga0102923_10574783	3300007606	Estuarine	AVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102897_12268962	3300007617	Estuarine	AHENLLENQRFKKGAFRKLIKDWMLEQYCKAIVSIRK*
Ga0102878_10539311	3300007624	Estuarine	LFFNLGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK*
Ga0102878_10561381	3300007624	Estuarine	HENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102856_10934181	3300007636	Estuarine	AFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102876_11257351	3300007642	Estuarine	FGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSVSK*
Ga0102855_10700451	3300007647	Estuarine	FAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK
Ga0102824_11251561	3300007681	Estuarine	FGSVAVLLAHENLLENQRVKKFAFRMLIKDWMPEQYCKRIVSASK*
Ga0102867_11210071	3300007716	Estuarine	LIAHENLLENQRFKKGAFRKLIKDWMLEQYCKAIVSIR
Ga0102867_11516551	3300007716	Estuarine	AHDGAFAKLFFNLGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYCKAIVSIRK*
Ga0102867_12078932	3300007716	Estuarine	ELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIV*
Ga0105737_11778962	3300007862	Estuary Water	HDGAFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0105739_10420971	3300007954	Estuary Water	QGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0105746_12271322	3300007973	Estuary Water	GQGCLQGFGSVAVLLAHENLLENQRVKNFTFRMLIKDWMLEQYCNGIVSASK*
Ga0105747_13526671	3300007974	Estuary Water	ENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0102904_10737481	3300007981	Estuarine	LGQGCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSTSK*
Ga0102922_11155592	3300008021	Estuarine	FDDFAFTQAHDGAFAELFFNLGQGSLEGFGFVAVLIAHENLLENQRFKKGAFRKLIKDWMLEQYCKAIVSIRK*
Ga0102893_11436752	3300008052	Estuarine	TQAHDGAFAELFFNLGQGSLEGFGFVAVLIAHENLLENQRVKNGTFRKLIKDWMLEQYFNGIVLSSK*
Ga0108970_115448153	3300008055	Estuary	AVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNSIVLSSK*
Ga0114351_13735791	3300008117	Freshwater, Plankton	SVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK*
Ga0114354_12774182	3300008119	Freshwater, Plankton	VLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
Ga0114354_12774631	3300008119	Freshwater, Plankton	VLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSGSK*
Ga0114336_10057861	3300008261	Freshwater, Plankton	AFAKLFFNLGQGCLQGFGFVAVLVAHENLLENQRVKNDAFRKLIKDWMLEQYFNGIVL*
Ga0114336_11211053	3300008261	Freshwater, Plankton	AFAKLFFNLGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK*
Ga0114968_100180508	3300009155	Freshwater Lake	LLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
Ga0114977_103721702	3300009158	Freshwater Lake	GSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIV*
Ga0114981_100120941	3300009160	Freshwater Lake	ELFFNLGQGCLQGFGFVAVLFAHENLLENQRVKNVAFRVLIKDWMLEQYFNCIVSIRK*
Ga0114966_100526481	3300009161	Freshwater Lake	THDGAFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNDAFRMLIKDWMLEQYCNGIVSASK*
Ga0114969_104937242	3300009181	Freshwater Lake	LGQGCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK*
Ga0114971_102295533	3300009185	Freshwater Lake	HENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSVSK*
Ga0114983_10972072	3300009194	Deep Subsurface	GCLQGFGFVAVLVAHENLLENQLVKNGAFRKLIKDWMLEQYCKRNVSASK*
Ga0114958_103221512	3300009684	Freshwater Lake	FNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
Ga0136551_10124451	3300010388	Pond Fresh Water	ENLLENQRVKNGAFRKLIKDWMLEQYCNGIVSTIQ*
Ga0133913_134456853	3300010885	Freshwater Lake	ELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFTFRMLIKDWMLEQYCNGIVSASK*
Ga0164294_103943213	3300013006	Freshwater	AQTHDGAFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIV*
Ga0177922_102402502	3300013372	Freshwater	AILLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK*
Ga0177922_109469112	3300013372	Freshwater	AVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIVSTSK*
Ga0211736_107269641	3300020151	Freshwater	GQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYSNGIVLSSK
Ga0211735_109204873	3300020162	Freshwater	AVLVAHENLLENQRFKKGAFRKLIKDWMLEQYFNGIVL
Ga0211735_109220388	3300020162	Freshwater	AVLVAHENLLENQRFKKGAFRKLIKDWMLEQYCNAIVSSSK
Ga0211729_107842571	3300020172	Freshwater	NLGQGCLQGFGFVAVLVAHENLLENQRFKKGAFRKLIKDWMLEQYCNAIVSPSK
Ga0208599_10512412	3300020554	Freshwater	GCLQGFGSVAVLLAHENLLENQRVKKFALRMLIKDWMLEQYCKRIVSGSK
Ga0208598_10362091	3300020568	Freshwater	FNLGQGCLQGFGFVAVLVAHENLLENQRVKKFALRMLIKDWMLEQYCKRIVSGSK
Ga0222712_102932171	3300021963	Estuarine Water	AKLFFDLGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVSSSK
Ga0228702_10097261	3300022748	Freshwater	CLQGFGFVAVWVAHENLLENQRVKNGASRKLIKDWMLEQYCKPIV
Ga0214921_1000324622	3300023174	Freshwater	GFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIV
Ga0214921_1001327211	3300023174	Freshwater	GFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK
Ga0214919_100334991	3300023184	Freshwater	FGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIV
Ga0214919_103455953	3300023184	Freshwater	GFGFVAVLLAHENLLENQRVKNGAFRVLIKDWMLEQYCNGIVSMRK
Ga0244777_101797311	3300024343	Estuarine	AELFFNLGQGSLEGFGFVAVLIAHENLLENQRFKKGAFRKLIKDWMLEQYCKAIVSIRK
Ga0244776_103437693	3300024348	Estuarine	FVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVSSSK
Ga0255150_10598451	3300024505	Freshwater	GVAHENLLENQRVENGASRKLIKDWMLEQYCNGIVVLSK
Ga0255246_10555892	3300024863	Freshwater	GCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK
Ga0208783_101041973	3300025872	Aqueous	VAVLVAHRNLHKNQRVEKLAFRKLIKDWMLEQYCNGIVSTSK
Ga0255111_10463083	3300027154	Freshwater	HENLLENQRVKSFAFRVLIKDWMLEQYCNAIVLASK
Ga0208921_10471961	3300027188	Estuarine	LGQGCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMPEQYCKRIVSASK
Ga0208023_10175971	3300027206	Estuarine	LFFNLGQGCLQGFGSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK
Ga0208169_10884002	3300027223	Estuarine	FGSVAVLLAHENLLENQRVKKFAFRMLIKDWMPEQYCKRIVSASK
Ga0255096_10497241	3300027302	Freshwater	HENLLENQRVKNGASRKLIKDWMLEQYCNGIVLTIQ
Ga0255072_10791401	3300027508	Freshwater	CLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNV
Ga0209353_101743661	3300027798	Freshwater Lake	LQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRNVSASK
Ga0209358_100872591	3300027804	Freshwater Lake	GQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYCNGIVSTIQ
Ga0209229_104475811	3300027805	Freshwater And Sediment	LAHENLLENQRVKKFALRMLIKDWMLEQYCKRIVSGSK
Ga0209354_103353732	3300027808	Freshwater Lake	LFFNLGQGCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSASK
Ga0209550_100235501	3300027892	Freshwater Lake	AVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK
Ga0209550_101656701	3300027892	Freshwater Lake	FFNLGQGCLQGFGFVAVLVAHENLLENQRVKNDAFRKLIKDWMLEQYFNGIVL
Ga0315907_101798201	3300031758	Freshwater	GCLQGFGFVAVLVAHENLLENQRVKNDAFRKLIKDWMLEQYFSGIVL
Ga0315899_115739151	3300031784	Freshwater	FGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSGSK
Ga0315908_101829284	3300031786	Freshwater	AVLVAHENLLENQRVKNGAFRKLIKDWMLEQYCNAIVSIRK
Ga0315908_107031823	3300031786	Freshwater	LGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK
Ga0334989_0096818_1444_1635	3300033984	Freshwater	AQTHDGAFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIV
Ga0335003_0081932_1_153	3300033995	Freshwater	GCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCKRIVSTSK
Ga0335004_0131532_3_236	3300034021	Freshwater	HLDVFDDFAFAQAHDGAFAKLFFNLGQGCLQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK
Ga0334983_0097486_1737_1883	3300034060	Freshwater	LQGFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK
Ga0334990_0133718_1229_1348	3300034068	Freshwater	SVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIV
Ga0334990_0261235_771_932	3300034068	Freshwater	LGQGCLQGFGSVAVLLAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK
Ga0335031_0762620_3_167	3300034104	Freshwater	NLGQGCLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMPEQYCKRIVSASK
Ga0335035_0712872_307_513	3300034105	Freshwater	DFAFAQAHDGAFAKLFFNLGQGCLQGFGFVAVLVAHENLLENQRVKNDAFRKLIKDWMLEQYFNGIVL
Ga0335036_0047263_2_142	3300034106	Freshwater	GFGFVAVLVAHENLLENQRVKNGAFRKLIKDWMLEQYFNGIVLSSK
Ga0335068_0130200_2_139	3300034116	Freshwater	CLQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIV
Ga0335053_0030572_3669_3884	3300034118	Freshwater	DFAFAQTHDSAFAELFFNLGQGCLQGFGSVAVLLAHENLLENQRVKKFALRMLIKDWMLEQYCKRIVSGSK
Ga0335058_0017340_1_216	3300034121	Freshwater	DFAFAQAHDGAFAKLFFNLGQGCLQGFGFVAVLLAHENLLENQRVKNGASRKLIKDWMLEQYCNGIVLARK
Ga0335058_0018542_4019_4153	3300034121	Freshwater	LQGFGSVAVLLAHENLLENQRVKKFAFRMLIKDWMLEQYCNGIV
Ga0335058_0593512_474_620	3300034121	Freshwater	LQGFGFVAVLLAHENLLENQRVENGASRKLIKDWMLEQYFNSIVLSSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070024

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences