Metagenome / Metatranscriptome Family F069930

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069930
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	49 residues
Representative Sequence	VATVTSVIELLVGLACLGLGAVVWPRNRLLAVALGVAGLAAAIHATADLL
Number of Associated Samples	104
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	25.20 %
% of genes from short scaffolds (< 2000 bps)	85.37 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.675 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (25.203 % of family members)
Environment Ontology (ENVO)	Unclassified (37.398 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.350 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.41% β-sheet: 0.00% Coil/Unstructured: 43.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF03807	F420_oxidored	47.15
PF01642	MM_CoA_mutase	30.89
PF00561	Abhydrolase_1	4.88
PF02128	Peptidase_M36	4.07
PF12697	Abhydrolase_6	2.44
PF08279	HTH_11	1.63
PF13622	4HBT_3	0.81
PF00364	Biotin_lipoyl	0.81
PF13240	zinc_ribbon_2	0.81
PF07963	N_methyl	0.81
PF00890	FAD_binding_2	0.81
PF00005	ABC_tran	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	30.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.93 %
Unclassified	root	N/A	17.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.93 %
Unclassified	root	N/A	17.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.67 %
Unclassified	root	N/A	17.07 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.25 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.35 %
Unclassified	root	N/A	17.07 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59.35 %
Unclassified	root	N/A	17.07 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	54.47 %
Unclassified	root	N/A	17.07 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	44.72 %
Unclassified	root	N/A	17.07 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.25 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	44.72 %
Unclassified	root	N/A	17.07 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.25 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	44.72 %
Unclassified	root	N/A	17.07 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.25 %
Tetrasphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	44.72 %
Unclassified	root	N/A	17.07 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.25 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100258487	Not Available	1023	Open in IMG/M
3300004157\|Ga0062590_101096291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	767	Open in IMG/M
3300005093\|Ga0062594_101757548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651	Open in IMG/M
3300005166\|Ga0066674_10173699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300005171\|Ga0066677_10405225	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300005172\|Ga0066683_10041571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2689	Open in IMG/M
3300005174\|Ga0066680_10542818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	730	Open in IMG/M
3300005177\|Ga0066690_10289494	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300005334\|Ga0068869_100682927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	874	Open in IMG/M
3300005341\|Ga0070691_10339445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	831	Open in IMG/M
3300005343\|Ga0070687_100500532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	818	Open in IMG/M
3300005347\|Ga0070668_101092011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	720	Open in IMG/M
3300005406\|Ga0070703_10000082	All Organisms → cellular organisms → Bacteria	47826	Open in IMG/M
3300005444\|Ga0070694_100834072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	758	Open in IMG/M
3300005447\|Ga0066689_10114653	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300005450\|Ga0066682_10288867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1058	Open in IMG/M
3300005451\|Ga0066681_10343907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	916	Open in IMG/M
3300005518\|Ga0070699_100987581	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300005526\|Ga0073909_10061118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1397	Open in IMG/M
3300005536\|Ga0070697_100953791	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005552\|Ga0066701_10089402	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300005552\|Ga0066701_10581001	Not Available	685	Open in IMG/M
3300005554\|Ga0066661_10840296	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005559\|Ga0066700_10972784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300005561\|Ga0066699_11230051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300005568\|Ga0066703_10808583	Not Available	536	Open in IMG/M
3300005576\|Ga0066708_10906017	Not Available	550	Open in IMG/M
3300005614\|Ga0068856_101058836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	829	Open in IMG/M
3300005719\|Ga0068861_100110076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2206	Open in IMG/M
3300006031\|Ga0066651_10052982	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300006031\|Ga0066651_10820745	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300006046\|Ga0066652_101013375	Not Available	788	Open in IMG/M
3300006794\|Ga0066658_10221209	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300006796\|Ga0066665_10665106	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300006796\|Ga0066665_10842378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	717	Open in IMG/M
3300006800\|Ga0066660_10559067	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300009012\|Ga0066710_100034612	All Organisms → cellular organisms → Bacteria	5967	Open in IMG/M
3300009012\|Ga0066710_100078849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4280	Open in IMG/M
3300009012\|Ga0066710_101681166	All Organisms → cellular organisms → Archaea → Euryarchaeota	967	Open in IMG/M
3300009098\|Ga0105245_11344422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	764	Open in IMG/M
3300009137\|Ga0066709_100035787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5363	Open in IMG/M
3300009137\|Ga0066709_100948907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1256	Open in IMG/M
3300009137\|Ga0066709_101207336	Not Available	1113	Open in IMG/M
3300009137\|Ga0066709_102071542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	787	Open in IMG/M
3300009148\|Ga0105243_10143354	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300009162\|Ga0075423_12587046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300010147\|Ga0126319_1325368	Not Available	715	Open in IMG/M
3300010323\|Ga0134086_10016589	All Organisms → cellular organisms → Bacteria	2322	Open in IMG/M
3300010364\|Ga0134066_10405569	Not Available	521	Open in IMG/M
3300010397\|Ga0134124_10627975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1055	Open in IMG/M
3300010403\|Ga0134123_12576386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300012004\|Ga0120134_1078460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
3300012198\|Ga0137364_10320772	Not Available	1152	Open in IMG/M
3300012199\|Ga0137383_10047648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3055	Open in IMG/M
3300012200\|Ga0137382_10001571	All Organisms → cellular organisms → Bacteria	10148	Open in IMG/M
3300012200\|Ga0137382_10672013	All Organisms → cellular organisms → Archaea → Euryarchaeota	742	Open in IMG/M
3300012201\|Ga0137365_10074947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2553	Open in IMG/M
3300012201\|Ga0137365_10188381	Not Available	1545	Open in IMG/M
3300012201\|Ga0137365_10389798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1028	Open in IMG/M
3300012206\|Ga0137380_10065041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3335	Open in IMG/M
3300012207\|Ga0137381_10252615	Not Available	1533	Open in IMG/M
3300012207\|Ga0137381_10795175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	820	Open in IMG/M
3300012208\|Ga0137376_10565669	Not Available	984	Open in IMG/M
3300012210\|Ga0137378_10483073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1145	Open in IMG/M
3300012211\|Ga0137377_10067997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3331	Open in IMG/M
3300012211\|Ga0137377_10551463	Not Available	1090	Open in IMG/M
3300012356\|Ga0137371_10422917	All Organisms → cellular organisms → Archaea → Euryarchaeota	1032	Open in IMG/M
3300012357\|Ga0137384_11098249	Not Available	637	Open in IMG/M
3300012951\|Ga0164300_10126464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1163	Open in IMG/M
3300012951\|Ga0164300_10271910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872	Open in IMG/M
3300012955\|Ga0164298_10148179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1314	Open in IMG/M
3300012955\|Ga0164298_10553767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	780	Open in IMG/M
3300012955\|Ga0164298_11428261	Not Available	537	Open in IMG/M
3300012958\|Ga0164299_10116501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1419	Open in IMG/M
3300012975\|Ga0134110_10178121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	886	Open in IMG/M
3300012985\|Ga0164308_12014204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300012986\|Ga0164304_10073053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1955	Open in IMG/M
3300012989\|Ga0164305_10962755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300014166\|Ga0134079_10152991	All Organisms → cellular organisms → Archaea → Euryarchaeota	932	Open in IMG/M
3300015358\|Ga0134089_10071821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1293	Open in IMG/M
3300017657\|Ga0134074_1160337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	789	Open in IMG/M
3300018027\|Ga0184605_10038891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1991	Open in IMG/M
3300018051\|Ga0184620_10125098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	814	Open in IMG/M
3300018431\|Ga0066655_10005283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5233	Open in IMG/M
3300018433\|Ga0066667_10198678	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300018433\|Ga0066667_10201766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1462	Open in IMG/M
3300021344\|Ga0193719_10320400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300021415\|Ga0193694_1051742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300021418\|Ga0193695_1002357	All Organisms → cellular organisms → Bacteria	3362	Open in IMG/M
3300025899\|Ga0207642_10061517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1746	Open in IMG/M
3300025915\|Ga0207693_10425943	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300025918\|Ga0207662_10454727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	876	Open in IMG/M
3300025922\|Ga0207646_10016515	All Organisms → cellular organisms → Bacteria	6927	Open in IMG/M
3300025927\|Ga0207687_11403510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300025939\|Ga0207665_10895697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300025942\|Ga0207689_10670881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	874	Open in IMG/M
3300025981\|Ga0207640_12162999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300026089\|Ga0207648_10055978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3442	Open in IMG/M
3300026118\|Ga0207675_100318619	Not Available	1518	Open in IMG/M
3300026328\|Ga0209802_1202387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	762	Open in IMG/M
3300026331\|Ga0209267_1174592	Not Available	858	Open in IMG/M
3300026343\|Ga0209159_1037895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2494	Open in IMG/M
3300026524\|Ga0209690_1277454	Not Available	529	Open in IMG/M
3300026530\|Ga0209807_1100596	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300026538\|Ga0209056_10453714	Not Available	723	Open in IMG/M
3300026548\|Ga0209161_10143683	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300026550\|Ga0209474_10323425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	887	Open in IMG/M
3300026552\|Ga0209577_10370357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1046	Open in IMG/M
3300028714\|Ga0307309_10028063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1137	Open in IMG/M
3300028787\|Ga0307323_10222766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300028793\|Ga0307299_10400704	Not Available	514	Open in IMG/M
3300028824\|Ga0307310_10374340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	703	Open in IMG/M
3300028824\|Ga0307310_10492113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300028828\|Ga0307312_10825891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300028878\|Ga0307278_10236161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	812	Open in IMG/M
3300028878\|Ga0307278_10486536	Not Available	539	Open in IMG/M
3300028885\|Ga0307304_10157475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	950	Open in IMG/M
3300030336\|Ga0247826_11760046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300031200\|Ga0307496_10020759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	948	Open in IMG/M
3300031226\|Ga0307497_10114002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1073	Open in IMG/M
3300031421\|Ga0308194_10198161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300031820\|Ga0307473_11541924	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300032205\|Ga0307472_102728093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.43%
Host-Associated	Host-Associated	10.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.99%
Plants	Host-Associated → Plants	10.57%
Aquatic	Environmental → Aquatic	2.44%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.06%
Sediment	Environmental → Aquatic → Sediment	1.63%
Freshwater	Environmental → Aquatic → Freshwater	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.05%
Loam	Environmental → Terrestrial → Soil → Loam	8.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.51%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.63%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1002584872	3300000956	Soil	VATVTSAIELLVGLACLGLGAVVWPRNRLLAVALGVAGVVASIHATLDLL*
Ga0062590_1010962911	3300004157	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGFAATIHAVVDLV*
Ga0062594_1017575482	3300005093	Soil	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAIHAVVDLV*
Ga0066674_101736992	3300005166	Soil	VANVTSVTELLVGLACLGVGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0066677_104052252	3300005171	Soil	VATVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHGTVDLLWAMTERAGR*
Ga0066683_100415712	3300005172	Soil	VATVTSVTELLVGLACLGVGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0066680_105428182	3300005174	Soil	VATLTSVTELLVGLACVGLGVLMWPRNRFVGVGLGVAGLAAVIHATADLL*
Ga0066690_102894942	3300005177	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHGTVDLL*
Ga0068869_1006829272	3300005334	Miscanthus Rhizosphere	VAIVTSVIELLVGLACVGLGAVMWPRNRFLAVALGVAGVVAAIHATLDLL*
Ga0070691_103394451	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VAIVTSVIELLVGLACVGLGAVMWPRNRFLAVALGVAGLAAAIHAVVDLV*
Ga0070687_1005005321	3300005343	Switchgrass Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAA
Ga0070668_1010920112	3300005347	Switchgrass Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNGFLAVALGVAGLAAAIHAVVDLV*
Ga0070703_1000008242	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VATVTSVTELLVGLACLGLGALVWPRNRFLATALGVAGLVAMTHATADLL*
Ga0070694_1008340722	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VATVTSVIELLVGLACVGLGAVMWPRNRFLAVALGVAGVVAAIHATLDLL*
Ga0066689_101146532	3300005447	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHGTVDLLWAMTERAGR*
Ga0066682_102888672	3300005450	Soil	VATVTSVIELLVGLACLGLGAVVWPRTRFLAIVLVIAGLIAAIHATVDLI*
Ga0066681_103439072	3300005451	Soil	VANVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0070699_1009875812	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VATVTSVTELLVGLACLGLGALVWPRNRFLASALGVAGLVAMIHATADLL*
Ga0073909_100611181	3300005526	Surface Soil	VVTVTSVIELLVGLACVGLGAVVWPRNRFLAVTLGVAGVVAAIHATLDLL*
Ga0070697_1009537912	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VATVTSVIELLVGLACLGLGAVVWPKNRFLAVALGVAGAAAAIHATLDLF*
Ga0066701_100894022	3300005552	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHATVDLL*
Ga0066701_105810012	3300005552	Soil	VATLTSVTELLVGLACVGLGALMWPRNRFVGVGLGVAGLAAVIHATADLL*
Ga0066661_108402961	3300005554	Soil	TVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHGTVDLLWAMTERAGR*
Ga0066700_109727841	3300005559	Soil	VVTVTSVTELLVGLACLGLGGLMWPRNRFVAVALGVAGLAAMIH
Ga0066699_112300512	3300005561	Soil	VATVTSVAELLVGLVCLGLGALMWPRNRFVAVALGVAGLAAMIHAAADLL*
Ga0066703_108085831	3300005568	Soil	VATLTSVTELLVGLACVGLGALMWPRNRFVGVALGVAGLTAVIHATADLL*
Ga0066708_109060171	3300005576	Soil	SPAVATVTSVTELLVGLACLGLGVLMWPRNRFVAVALGVAGLAAMIHATVDLL*
Ga0068856_1010588361	3300005614	Corn Rhizosphere	VIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAIHAVVDLV*
Ga0068861_1001100763	3300005719	Switchgrass Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGVVAAIHATLDLL*
Ga0066651_100529822	3300006031	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRLLALALGVAGLAAAIHATLELL*
Ga0066651_108207451	3300006031	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHATV
Ga0066652_1010133751	3300006046	Soil	VIELLVGLACLGLGAVVWPRTRFLAIVLVIAGLIAAIHATVDLI*
Ga0066658_102212092	3300006794	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHAMVDLL*
Ga0066665_106651062	3300006796	Soil	LPRRATVTSVTELLVGLACLGVGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0066665_108423782	3300006796	Soil	VATVTSVTELLVGLACLGLGAVVWPRMRFLAIVLGVAGLVATIHAVADLL*
Ga0066660_105590671	3300006800	Soil	LLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHGTVDLLWAMTERAGR*
Ga0066710_1000346122	3300009012	Grasslands Soil	VATLTSVTELLVGLACLGLGAVVWPRNRLIAVALGVAGLAAAIHATADLL
Ga0066710_1000788494	3300009012	Grasslands Soil	VATLTSVTELLVGIACLGLGAVVWPRNRLLAVALGVAGLAAAIHATADLL
Ga0066710_1016811662	3300009012	Grasslands Soil	VATVTSVTELLVGLACLGLGVLMWPRNRFVAVALGVAGLVATIHAVADLL
Ga0105245_113444222	3300009098	Miscanthus Rhizosphere	VAIVTSVIELLVALACLGLGAVVWPRNGFLAVALGVAGLAAAIHAVVDLV*
Ga0066709_1000357873	3300009137	Grasslands Soil	VATLTSVTELLVGLACLGLGAVVWPRNRLLAVTLGVAGLAAAIHATADLL*
Ga0066709_1009489072	3300009137	Grasslands Soil	VATVTSVIELLVGLACLGLGAVVWPRTRFLATVLVIAGLIAAIHATVDLI*
Ga0066709_1012073361	3300009137	Grasslands Soil	VVTVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHATVDLL*
Ga0066709_1020715422	3300009137	Grasslands Soil	VATLTSVTELLVGLACLGLGAVVWPRNRLIAVALGVAGLAAAIHATADLL*
Ga0105243_101433543	3300009148	Miscanthus Rhizosphere	CRAVAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAIHAVVDLV*
Ga0075423_125870462	3300009162	Populus Rhizosphere	VATVTSVIELLVGLACLGLGAVVWPKNRFLAVALGVAGAAAAIHATLDLV*
Ga0126319_13253682	3300010147	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRLLALALGVAGLAAAIHATADLL*
Ga0134086_100165893	3300010323	Grasslands Soil	VVNVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0134066_104055692	3300010364	Grasslands Soil	ANVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0134124_106279753	3300010397	Terrestrial Soil	VVTVTSVIELLVGLACVGLGAVVWPRNRFLAVALAVAGVVAAIHATLDLL*
Ga0134123_125763861	3300010403	Terrestrial Soil	VATVTSVIELLVGLACVGLGAVMWPRNRFLAVALGVAGLAAAIHAVVDLV*
Ga0120134_10784602	3300012004	Permafrost	VATVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHAAVDLL*
Ga0137364_103207722	3300012198	Vadose Zone Soil	ELLVGLACLGLGAVVWPRNRLIALALGVAGLAAAIHATADLL*
Ga0137383_100476483	3300012199	Vadose Zone Soil	VATLTSVTELLVGLACVGLGALMWPRNRFVGVALGVAGLAAVIHATADLL*
Ga0137382_1000157111	3300012200	Vadose Zone Soil	VATLTSVIELLVGLACLGLGAVVWPRNRLLALALGVAGLAAAIHATADLL*
Ga0137382_106720132	3300012200	Vadose Zone Soil	VATLTSVTELLVGLACLGLGAVVWPRNRLIALALGVAGLAAAIHATADLL*
Ga0137365_100749473	3300012201	Vadose Zone Soil	VATVTSVIELLVGLACLGLGAVVWPRTRFLAIVLVIAGLIAAIHATVDLT*
Ga0137365_101883812	3300012201	Vadose Zone Soil	VTELLVGLACVGLGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0137365_103897982	3300012201	Vadose Zone Soil	VATVTSVTELLIGLACLGLGALMWPRNRFVVVALGVAGLAAMIHATADLL*
Ga0137380_100650416	3300012206	Vadose Zone Soil	VATVTSVTELLVGFACLGLGALMWPRNRFVAVALGVAGLAAM
Ga0137381_102526152	3300012207	Vadose Zone Soil	VATVTSVTELLVGLACLGLGALMWPRSRFVAVALGVAGLVATIHAVADLL*
Ga0137381_107951752	3300012207	Vadose Zone Soil	VATVTSVTELLVGLACLGLGALIWPRNRFVVVALGVAGLAAMIHATADLL*
Ga0137376_105656691	3300012208	Vadose Zone Soil	TSVTELLVGLACLGLGAVVWPRNRLIAVALGVAGLAAAIHATADLL*
Ga0137378_104830732	3300012210	Vadose Zone Soil	VATVTSVTELLVGFACLGLGALMWPRNRLLALALGVAGLAAAIHATADLL*
Ga0137377_100679973	3300012211	Vadose Zone Soil	VATLTSVTELLVGLACVGLGALMWPRNRFVGVALGVAGLAAVIHATADFL*
Ga0137377_105514632	3300012211	Vadose Zone Soil	VATVTSVIELLVGLACLGLGAVVWPRTRFLAIVLVIAGLVAAIHATVDLI*
Ga0137371_104229172	3300012356	Vadose Zone Soil	VATVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHAAADLL*
Ga0137384_110982492	3300012357	Vadose Zone Soil	VTELLVGFACLGLGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0164300_101264642	3300012951	Soil	VAIVTSVIELLVGLACLGLGAVVWPRNRFLGVALGVAGLAAAIHAVVDLV*
Ga0164300_102719101	3300012951	Soil	VATVTSVIELLVGLACLGLGAVVWPRNGFLAVALGVAGLAAAIHAVVDLV*
Ga0164298_101481793	3300012955	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAIHATLELR*
Ga0164298_105537672	3300012955	Soil	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVTLGVAGVVAAIHATLDLL*
Ga0164298_114282612	3300012955	Soil	VAIVTSVIELLVGLACLGLGAVVWPRNRFLGVALGVAGLAAAIHAVVDVV*
Ga0164299_101165013	3300012958	Soil	WRAVAIVTSVIELMVGLACLGLGAVVWPRNRFLGVALGVAGLAAAIHAVVDLV*
Ga0134110_101781212	3300012975	Grasslands Soil	VANVTSVTELLVGLACLGLGALMWPRNRFVAVALGFAGLAAMIHATADLF*
Ga0164308_120142042	3300012985	Soil	VAIVTSVIELMVGLACLGLGAVVWPRNRSLAVALGVAGLAAAIHAVVDLV*
Ga0164304_100730533	3300012986	Soil	VAIVTSVIELMVGLACLGLGAVVWPRNRFLGVALGVAGLAAAIHAVVDLV*
Ga0164305_109627552	3300012989	Soil	VVTVTSVIELLVGLACLGLGAVVWPRNGFLAVALGVAGLAAAIHAVVDLV*
Ga0134079_101529912	3300014166	Grasslands Soil	VATVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHATADLF*
Ga0134089_100718211	3300015358	Grasslands Soil	VATGTSVIELLVGLACLGLGAVVWPRTRFLAIVLVIAG
Ga0134074_11603372	3300017657	Grasslands Soil	VANVTSVTELLVGLACLGLGALMWPRNRFVAVALGFAGLAAMIHATADLF
Ga0184605_100388911	3300018027	Groundwater Sediment	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGFAAAIAA
Ga0184620_101250981	3300018051	Groundwater Sediment	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGFAAAIHAVVDLV
Ga0066655_100052836	3300018431	Grasslands Soil	VATVTSVTELLVGLACLGVGALMWPRNRFVAVALGVAGLAAMIHATADLF
Ga0066667_101986782	3300018433	Grasslands Soil	VANVTSVTELLVGLACLGLGALMWPRNRFVAVALGVAGLAAMIHATADLF
Ga0066667_102017662	3300018433	Grasslands Soil	VATVTSVIELLVGLACLGLGAVVWPRTRFLAIVLVIAGLIAAIHATVDLI
Ga0193719_103204002	3300021344	Soil	VETVTGVIELLVGLACLGLAAVVWPRNRFLAVALGVAGLAAVIHAVVDLV
Ga0193694_10517421	3300021415	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRLLAVALGVAGLAAAIHAT
Ga0193695_10023572	3300021418	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRLLAVALGVAGLAAAIHATADLL
Ga0207642_100615172	3300025899	Miscanthus Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAIHAVVDLV
Ga0207693_104259431	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VATVTSVTELLVGLACPGLGALVWPRNRFLATALGVAGLVAM
Ga0207662_104547272	3300025918	Switchgrass Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNGFLAVALGVAGLAAAIHAVVDLV
Ga0207646_100165151	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VATVTSVTELLVGLACLGLGALVWPRNRFLATALGVAGLVAMTHAT
Ga0207687_114035102	3300025927	Miscanthus Rhizosphere	VAIVTSVIELLVALACLGLGAVVWPRNGFLAVALGVAGLAAAIHAVVDLV
Ga0207665_108956971	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAI
Ga0207689_106708812	3300025942	Miscanthus Rhizosphere	VAIVTSVIELLVGLACVGLGAVMWPRNRFLAVALGVAGVVAAIHATLDLL
Ga0207640_121629991	3300025981	Corn Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNRFLALALGVAGVVAAIHATLDLL
Ga0207648_100559785	3300026089	Miscanthus Rhizosphere	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVSGLAAAIHAVVDLV
Ga0207675_1003186192	3300026118	Switchgrass Rhizosphere	VATVTSVIELLVGLACVGLGAVMWPRNRFLAVALGVAGVVAAIHATLDLL
Ga0209802_12023872	3300026328	Soil	VATLTSVTELLVGLACVGLGVLMWPRNRFVGVGLGVAGLAAVIHATADLL
Ga0209267_11745922	3300026331	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHGTVDLL
Ga0209159_10378952	3300026343	Soil	VATVTSVTELLVGLACLGLGAVVWPRMRFLAIVLGVAGLVATIHAVADLL
Ga0209690_12774542	3300026524	Soil	VATLTSVTELLVGLACVGLGALMWPRNRFVGVGLGVAGLAAVIHATADLL
Ga0209807_11005962	3300026530	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHATVDLL
Ga0209056_104537141	3300026538	Soil	VTSVTELLVGLACLGVGALMWPRNRFVAVALGVAGLAAMIHATADLF
Ga0209161_101436833	3300026548	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAGLGVAGLAAMIHGTVDLLW
Ga0209474_103234251	3300026550	Soil	VANVTSVTELLVGLACLGLGALMWPRNRFVAVALG
Ga0209577_103703572	3300026552	Soil	VVTVTSVTELLVGLACLGLGALMWTRNRLVAAALGVAGLAAMIHGTVDLLWAMTERAGR
Ga0307309_100280633	3300028714	Soil	VATVTSVIELLVGLACLGMGAAIWSRKRVVAVILAAAGLAAV
Ga0307323_102227662	3300028787	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGFAAAI
Ga0307299_104007042	3300028793	Soil	VATVTSVTELLVGLACLGLSAVVWPRNRFLSVALGVAGLAAVIHATADLL
Ga0307310_103743402	3300028824	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRLLAVALGVAGLAAVIHAVVDLV
Ga0307310_104921131	3300028824	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGFAAAIHAVV
Ga0307312_108258912	3300028828	Soil	VATATSVTELLVGLACLGLSAVVWPRNRFLSVALGVAGLAAVIHATADLL
Ga0307278_102361611	3300028878	Soil	VATVTSVIELLVGLACLGLGAVVSPRNRLLAVALG
Ga0307278_104865361	3300028878	Soil	VATVTSVTELLVGLACLGLGAVVWPRNRLRAVALGVAGLAAAIHAVVDLV
Ga0307304_101574752	3300028885	Soil	TVTSVIEFLVGLACLGLGAVVWPRNRLLAVALGVAGLAAVIHAVVDLV
Ga0247826_117600462	3300030336	Soil	VATVTSVIELLVGLACLGLGAVVWPKNRLLAVALGVAGLA
Ga0307496_100207592	3300031200	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAIHAAVDLV
Ga0307497_101140022	3300031226	Soil	VATVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGLAAAIHAVVDLV
Ga0308194_101981612	3300031421	Soil	VATVTSVTELLVGLACLGLGAVVWPRNRFLSVALGVAGLTAVIHARADLL
Ga0307473_115419242	3300031820	Hardwood Forest Soil	VATVTSVTELLVGLACLGLGALVWPRNRFLASALGVAGLVAMIHATADLL
Ga0307472_1027280931	3300032205	Hardwood Forest Soil	VAIVTSVIELLVGLACLGLGAVVWPRNRFLAVALGVAGVVAAIHATLDLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069930

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences