Metagenome / Metatranscriptome Family F069896

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F069896
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	96 residues
Representative Sequence	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGQRREDAQSFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR
Number of Associated Samples	91
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.43 %
% of genes near scaffold ends (potentially truncated)	26.83 %
% of genes from short scaffolds (< 2000 bps)	66.67 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (80.488 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.585 % of family members)
Environment Ontology (ENVO)	Unclassified (47.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.285 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.17% β-sheet: 0.00% Coil/Unstructured: 46.83%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF04392	ABC_sub_bind	17.89
PF11249	DUF3047	8.13
PF00072	Response_reg	4.88
PF00118	Cpn60_TCP1	3.25
PF11127	DUF2892	2.44
PF02585	PIG-L	1.63
PF13432	TPR_16	1.63
PF04264	YceI	1.63
PF01161	PBP	1.63
PF02577	BFN_dom	1.63
PF07366	SnoaL	1.63
PF01381	HTH_3	0.81
PF01695	IstB_IS21	0.81
PF04216	FdhE	0.81
PF07819	PGAP1	0.81
PF14534	DUF4440	0.81
PF02128	Peptidase_M36	0.81
PF07883	Cupin_2	0.81
PF08734	GYD	0.81
PF07593	UnbV_ASPIC	0.81
PF11984	DUF3485	0.81
PF00536	SAM_1	0.81
PF12833	HTH_18	0.81
PF13185	GAF_2	0.81
PF01355	HIPIP	0.81
PF01323	DSBA	0.81
PF07238	PilZ	0.81
PF05199	GMC_oxred_C	0.81
PF01165	Ribosomal_S21	0.81
PF00027	cNMP_binding	0.81
PF01243	Putative_PNPOx	0.81
PF01546	Peptidase_M20	0.81
PF00571	CBS	0.81
PF13183	Fer4_8	0.81
PF13458	Peripla_BP_6	0.81
PF03464	eRF1_2	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	17.89
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	3.25
COG1259	Bifunctional DNase/RNase	General function prediction only [R]	1.63
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	1.63
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	1.63
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	1.63
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.81
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.81
COG1075	Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold	Lipid transport and metabolism [I]	0.81
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.81
COG2267	Lysophospholipase, alpha-beta hydrolase superfamily	Lipid transport and metabolism [I]	0.81
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.81
COG3058	Formate dehydrogenase maturation protein FdhE	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.49 %
Unclassified	root	N/A	19.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.49 %
Unclassified	root	N/A	19.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.49 %
Unclassified	root	N/A	19.51 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	26.83 %
Unclassified	root	N/A	19.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.63 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.81 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	26.83 %
Unclassified	root	N/A	19.51 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6.50 %
Fibrobacteres	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres	0.81 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	26.83 %
Unclassified	root	N/A	19.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.44 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.63 %
unclassified Fibrobacterota	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → unclassified Fibrobacterota	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.51 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	14.63 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.63 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.81 %
Fibrobacterota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → unclassified Fibrobacterota → Fibrobacterota bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.51 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.63 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.63 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %
Fibrobacterota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → unclassified Fibrobacterota → Fibrobacterota bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.51 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	14.63 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.63 %
Bradyrhizobium symbiodeficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium symbiodeficiens	0.81 %
Fibrobacterota bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → unclassified Fibrobacterota → Fibrobacterota bacterium	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12764921	All Organisms → cellular organisms → Bacteria → Proteobacteria	1350	Open in IMG/M
3300000955\|JGI1027J12803_100486298	Not Available	535	Open in IMG/M
3300002886\|JGI25612J43240_1055814	Not Available	593	Open in IMG/M
3300003994\|Ga0055435_10025362	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300005444\|Ga0070694_100025622	All Organisms → cellular organisms → Bacteria → FCB group → Fibrobacteres → unclassified Fibrobacterota → Fibrobacterota bacterium	3816	Open in IMG/M
3300005445\|Ga0070708_100109352	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2539	Open in IMG/M
3300005445\|Ga0070708_100472692	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1183	Open in IMG/M
3300005467\|Ga0070706_100004844	All Organisms → cellular organisms → Bacteria	12891	Open in IMG/M
3300005467\|Ga0070706_100020317	All Organisms → cellular organisms → Bacteria	6120	Open in IMG/M
3300005467\|Ga0070706_100064034	All Organisms → cellular organisms → Bacteria	3398	Open in IMG/M
3300005468\|Ga0070707_100082265	All Organisms → cellular organisms → Bacteria	3109	Open in IMG/M
3300005468\|Ga0070707_100264899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1671	Open in IMG/M
3300005468\|Ga0070707_100271228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1650	Open in IMG/M
3300005526\|Ga0073909_10556162	Not Available	562	Open in IMG/M
3300006057\|Ga0075026_100904963	Not Available	542	Open in IMG/M
3300006796\|Ga0066665_11140970	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300006852\|Ga0075433_11717188	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300006854\|Ga0075425_100019959	All Organisms → cellular organisms → Bacteria	7318	Open in IMG/M
3300007255\|Ga0099791_10012431	All Organisms → cellular organisms → Bacteria	3585	Open in IMG/M
3300007255\|Ga0099791_10156584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1065	Open in IMG/M
3300009012\|Ga0066710_101137676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium symbiodeficiens	1208	Open in IMG/M
3300009038\|Ga0099829_10030223	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3854	Open in IMG/M
3300009088\|Ga0099830_10240073	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300009088\|Ga0099830_10759989	Not Available	799	Open in IMG/M
3300009089\|Ga0099828_10089093	All Organisms → cellular organisms → Bacteria	2650	Open in IMG/M
3300009089\|Ga0099828_10358855	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300009089\|Ga0099828_11753719	Not Available	546	Open in IMG/M
3300009090\|Ga0099827_10104048	All Organisms → cellular organisms → Bacteria	2262	Open in IMG/M
3300009090\|Ga0099827_10360285	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1238	Open in IMG/M
3300009090\|Ga0099827_10576779	Not Available	969	Open in IMG/M
3300009090\|Ga0099827_11755955	Not Available	541	Open in IMG/M
3300009143\|Ga0099792_10197681	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1141	Open in IMG/M
3300009143\|Ga0099792_11236446	Not Available	508	Open in IMG/M
3300009147\|Ga0114129_10823670	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1182	Open in IMG/M
3300009148\|Ga0105243_11033849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	826	Open in IMG/M
3300009174\|Ga0105241_11485784	Not Available	652	Open in IMG/M
3300011269\|Ga0137392_10213171	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1582	Open in IMG/M
3300011269\|Ga0137392_10880676	Not Available	738	Open in IMG/M
3300011270\|Ga0137391_10185907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1810	Open in IMG/M
3300011270\|Ga0137391_10969079	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	693	Open in IMG/M
3300012189\|Ga0137388_10064275	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3031	Open in IMG/M
3300012201\|Ga0137365_10176646	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300012202\|Ga0137363_10017169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4780	Open in IMG/M
3300012202\|Ga0137363_10050388	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2982	Open in IMG/M
3300012203\|Ga0137399_10234906	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1499	Open in IMG/M
3300012204\|Ga0137374_10001272	All Organisms → cellular organisms → Bacteria	28405	Open in IMG/M
3300012204\|Ga0137374_11287401	Not Available	505	Open in IMG/M
3300012205\|Ga0137362_10113527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2292	Open in IMG/M
3300012207\|Ga0137381_10467021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1101	Open in IMG/M
3300012209\|Ga0137379_10049472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4053	Open in IMG/M
3300012211\|Ga0137377_10286491	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
3300012351\|Ga0137386_10250181	Not Available	1274	Open in IMG/M
3300012361\|Ga0137360_11192662	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	658	Open in IMG/M
3300012363\|Ga0137390_10245366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1777	Open in IMG/M
3300012582\|Ga0137358_10133923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1686	Open in IMG/M
3300012685\|Ga0137397_10435495	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300012917\|Ga0137395_10856080	Not Available	658	Open in IMG/M
3300012918\|Ga0137396_10223468	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1387	Open in IMG/M
3300012922\|Ga0137394_10003663	All Organisms → cellular organisms → Bacteria	11587	Open in IMG/M
3300012931\|Ga0153915_10084041	All Organisms → cellular organisms → Bacteria	3344	Open in IMG/M
3300012931\|Ga0153915_10177505	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
3300012931\|Ga0153915_10710744	Not Available	1161	Open in IMG/M
3300012931\|Ga0153915_11689597	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300012951\|Ga0164300_10844610	Not Available	573	Open in IMG/M
3300012957\|Ga0164303_10487973	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300014881\|Ga0180094_1018071	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300014884\|Ga0180104_1003587	Not Available	3282	Open in IMG/M
3300017997\|Ga0184610_1028849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1544	Open in IMG/M
3300018056\|Ga0184623_10068712	Not Available	1629	Open in IMG/M
3300018059\|Ga0184615_10465639	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300018063\|Ga0184637_10051377	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300018076\|Ga0184609_10016064	All Organisms → cellular organisms → Bacteria → Proteobacteria	2890	Open in IMG/M
3300019881\|Ga0193707_1003520	All Organisms → cellular organisms → Bacteria → Proteobacteria	5602	Open in IMG/M
3300019882\|Ga0193713_1044444	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300019886\|Ga0193727_1109200	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300020004\|Ga0193755_1141305	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300021088\|Ga0210404_10020425	All Organisms → cellular organisms → Bacteria	2841	Open in IMG/M
3300021088\|Ga0210404_10045133	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2048	Open in IMG/M
3300021178\|Ga0210408_10020947	All Organisms → cellular organisms → Bacteria	5228	Open in IMG/M
3300021363\|Ga0193699_10326973	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300021432\|Ga0210384_10418638	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300021479\|Ga0210410_10655861	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	929	Open in IMG/M
3300022724\|Ga0242665_10143083	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	749	Open in IMG/M
3300025160\|Ga0209109_10066255	All Organisms → cellular organisms → Bacteria → Proteobacteria	1895	Open in IMG/M
3300025327\|Ga0209751_10272538	Not Available	1433	Open in IMG/M
3300025910\|Ga0207684_10004088	All Organisms → cellular organisms → Bacteria	13905	Open in IMG/M
3300025910\|Ga0207684_10008456	All Organisms → cellular organisms → Bacteria	9157	Open in IMG/M
3300025910\|Ga0207684_10010639	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	8085	Open in IMG/M
3300025910\|Ga0207684_10012049	All Organisms → cellular organisms → Bacteria	7529	Open in IMG/M
3300025922\|Ga0207646_10054316	All Organisms → cellular organisms → Bacteria	3584	Open in IMG/M
3300025922\|Ga0207646_10056299	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3515	Open in IMG/M
3300025922\|Ga0207646_10238645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1642	Open in IMG/M
3300025922\|Ga0207646_10255401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1584	Open in IMG/M
3300025935\|Ga0207709_11685042	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	527	Open in IMG/M
3300026285\|Ga0209438_1007572	All Organisms → cellular organisms → Bacteria	3667	Open in IMG/M
3300026285\|Ga0209438_1067850	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300026345\|Ga0257148_1000174	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300026480\|Ga0257177_1010278	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300026481\|Ga0257155_1008601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1330	Open in IMG/M
3300026490\|Ga0257153_1124642	Not Available	504	Open in IMG/M
3300026507\|Ga0257165_1000868	All Organisms → cellular organisms → Bacteria	3320	Open in IMG/M
3300026515\|Ga0257158_1083910	Not Available	618	Open in IMG/M
3300026538\|Ga0209056_10568548	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300026551\|Ga0209648_10383114	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300027645\|Ga0209117_1056814	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1143	Open in IMG/M
3300027655\|Ga0209388_1107574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300027655\|Ga0209388_1145907	Not Available	670	Open in IMG/M
3300027846\|Ga0209180_10188846	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300027862\|Ga0209701_10019794	All Organisms → cellular organisms → Bacteria	4385	Open in IMG/M
3300027862\|Ga0209701_10159748	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300027875\|Ga0209283_10082657	All Organisms → cellular organisms → Bacteria	2083	Open in IMG/M
3300027875\|Ga0209283_10176391	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300027882\|Ga0209590_10336719	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	971	Open in IMG/M
3300028784\|Ga0307282_10412782	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300028792\|Ga0307504_10120785	Not Available	859	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1147735	Not Available	521	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10035382	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300031720\|Ga0307469_10147657	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1754	Open in IMG/M
3300031962\|Ga0307479_10609170	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300031965\|Ga0326597_10011205	All Organisms → cellular organisms → Bacteria	11898	Open in IMG/M
3300031965\|Ga0326597_10634551	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300033407\|Ga0214472_10001894	All Organisms → cellular organisms → Bacteria	22705	Open in IMG/M
3300033433\|Ga0326726_10013903	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7044	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.12%
Host-Associated	Host-Associated	4.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.55%
Aquatic	Environmental → Aquatic	10.57%
Plants	Host-Associated → Plants	4.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.74%
Sediment	Environmental → Aquatic → Sediment	6.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.88%
Freshwater	Environmental → Aquatic → Freshwater	3.25%
Marine	Environmental → Aquatic → Marine	0.81%
Peat	Environmental → Terrestrial → Peat	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.25%
Sand	Environmental → Terrestrial → Soil → Sand	1.63%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.25%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.63%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.81%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.06%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.06%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.44%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.63%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.63%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.81%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026345	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-A	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_127649213	3300000789	Soil	MPMRRKGSIGLTKEQIRRVVLAKLKVVYRDWNFKDSPFSNRRRSGNRRDDSGAFDAALIAGLLGGLSEAIELNNQALITALGRKDLRMKAKAHEQRRKR*
JGI1027J12803_1004862981	3300000955	Soil	MRRKGSIGLTKEQIRRVVLAKLKVVYRDWNFKDSPFSNRRRSGNRRDDSGAFDAALIAGLLGGLSEAIELNNQALITALGRKDLRMKAKAHEQRRKR*
JGI25612J43240_10558141	3300002886	Grasslands Soil	QVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRRENAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR*
Ga0055435_100253621	3300003994	Natural And Restored Wetlands	MPMRRAGSLGLTKEQIRRVVLAKLKVVYRDWNFKDNPFSNRRRSGNRQKDSGAFAAALIAGLLGGLSEAIELNNQALLTAFGRKDPRMRAKAHGKRRKR*
Ga0070694_1000256222	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MVFRGRAGLTKEQVRRIVLAKLRIVYRDWRLTNDPFGRRDPDAGRRRDDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKDQRMRMKVQAHRRKR*
Ga0070708_1001093525	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MEKKSRVGLRKEEIRRIVLSKLRIVYRDWRFKNGPFWHKEPKAGQRRNDARAFETALLAALLGGLSEAIEKNNQALLTTLGRKNRLMRMKVQTKRRKR*
Ga0070708_1004726921	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSPRSRVGLTKEQVRRIVLSKLRIVYRDWHSEQGPFWHRAPKAGQRRSDAGSFDTALLAALLGGLSEAIEKNNHALFTALGRKDQRMRLKAVKRRKR*
Ga0070706_10000484413	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MASNGRIGLTKEQVRRIVLSKLKIVYRDWHFKKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALFTTLGRKNQRVRMKVHAKRRKG*
Ga0070706_1000203178	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MASRGRIGLTKEQVRRIVLSKLKIVYRDWRFKSSPFWHRGHRAGERRDDARSFDIALVAALLGGLSEAIEKNNQTLYTALGRKDDNMRRKRQAKPRWTR*
Ga0070706_1000640345	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MALKGRVGITKEEIRRIVLSKLRIVYRGWHFKNGPFWHREPKAGQRRNDARSFETALLAGLLGGLSEAIEKNNHALFTALWRKDQRMRMKVHAKRRKR*
Ga0070707_1000822655	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MALKGRVGITKEEIRRIVLSKLRIVYRDWHFKNGPFWHREPKAGQRRNDARSFETALLAGLLGGLSEAIEKNNHALFTALGRKDQRMRMKGHAKRRKR*
Ga0070707_1002648991	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAIKGRVGLTKERVRRIVLSKLKIVYRDWHFTKDPFWYREPKGGHRRSDPRSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRVRMKVHTKRRKR*
Ga0070707_1002712281	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKKVGIGLTKEQVRRIVLDKLKVVYRDWQSRDNPFSNRRRSGNRGNDARAFETALVAGLLGGLSEAIEKNNHLLLTALGRKDRRMRAKAQAKRRKR*
Ga0073909_105561622	3300005526	Surface Soil	MASKYRIGLTKEQVRRIALSKLKIVYRDWDFTKGPFWQLEPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKWRKR*
Ga0075026_1009049631	3300006057	Watersheds	MLMKPSNGLTKEEIRRIVLTKLKIVYRDWRFKDNPFSNQRRSGNRQNDARAFETALVAGLLGGLSEAIEKNNHALLSALGRKDRRTRAKAPGKRRKR*
Ga0066665_111409702	3300006796	Soil	MAFRGRVGLTKEQIRRIVLSKLKIVYRDWRFNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTSLGRKTQRVRAKGLAKGRRR*
Ga0075433_117171882	3300006852	Populus Rhizosphere	MPFRGRGGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKYRRMRRKGQAQRRK
Ga0075425_1000199591	3300006854	Populus Rhizosphere	MPFRGRGGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKYRRMRRK
Ga0099791_100124314	3300007255	Vadose Zone Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRRENAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR*
Ga0099791_101565842	3300007255	Vadose Zone Soil	MAFKYRIGLTKEQVRRIALSKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR*
Ga0066710_1011376762	3300009012	Grasslands Soil	MAFRARVGLTKEQIRRIVLSKLKIVYRDWRFNNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTSLGRKTQRVRAKGLAKGRRR
Ga0099829_100302234	3300009038	Vadose Zone Soil	MAQARRGLTKEQVRRIVLGKLKIVYRDWESKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALERKERRTRVKAPGKRRKR*
Ga0099830_102400731	3300009088	Vadose Zone Soil	MKVGSGLTKEQVRRIVLAKLKVVYRDWQSKDNPFSNRRRSGNRRNDARAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR*
Ga0099830_107599891	3300009088	Vadose Zone Soil	MKVGIGLTKEQVRRIVLAKLKIVYRDWQSMDNPFSNRRRSGNRGHEARAFEPALVAGLLGGLSEAIEKNNHLLLTALGRKDRRMRAKTQAKRRKR*
Ga0099828_100890933	3300009089	Vadose Zone Soil	MKVGIGLTKEQVRRIVLAKLKIVYRDWQSMDNPFSNRRRSGNRGHEARAFETALVAGLLGGLSEAIEKNNHLLLTELGRKDRRMRAKAQAKRRKR*
Ga0099828_103588553	3300009089	Vadose Zone Soil	MKVGIGLTKEQVRRIVLAKLKIVYRDWQSKDNPFSNRRRARNRQNDGRAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR*
Ga0099828_117537191	3300009089	Vadose Zone Soil	MRVGIGLTKEQVRRIVLAKLKVVYRDWQSKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALERKDHRTRVKAPGKRRKR*
Ga0099827_101040481	3300009090	Vadose Zone Soil	KLRIVCRDWHFKNGPFWHREPKAGQRRNDARSFETALLAGLLGGLSEAIEKNNHALFTALGRKDQRMRMKVHAKRRKR*
Ga0099827_103602852	3300009090	Vadose Zone Soil	MAQARRGLTKEQVRRIVLGKLKIVYRDWESKDNPFSNRRRSGNRGHDARAFETALVAGPLGGLSEAIEKNNHALLTALERKDHRTRVKAPGKRRKR*
Ga0099827_105767791	3300009090	Vadose Zone Soil	KRKGVRMKVGIGLTKEQVRRIVLAKLKIVYRDWQSKDNPFSNRRRSGNRGHKARAFETALVAGLLGGLSEAIEKNNHLLLTALGRKDRRMRAKTQAKRRKR*
Ga0099827_117559551	3300009090	Vadose Zone Soil	MKVGIGLTKEQVRRIVLGKLKIVYRDWQSKDNPFSNRRRSGNRRNDARAFETALVAGLLGGLSEAIEKNNHLLLTALGRKDRRMRAKAQVKRRKG*
Ga0099792_101976811	3300009143	Vadose Zone Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAPSFDTALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRK
Ga0099792_112364461	3300009143	Vadose Zone Soil	VRRIVLSKLRIVYRDWHSEQGPFWHRAPKAGQRRSDARSFDTALLAALLGGLSEAIEKNNQALITALGRKDQRMRLKAVKRRKR*
Ga0114129_108236701	3300009147	Populus Rhizosphere	MPFRGRGGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTAWGRKDWRMR
Ga0105243_110338492	3300009148	Miscanthus Rhizosphere	MVFRGRAGLTKEQVRRIVLAKLRIVYRDWRLTNDPFGRRDPDAGRRRDDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKDQRMRMK
Ga0105241_114857841	3300009174	Corn Rhizosphere	QKLRPGFSTGSVSERWPHMAFKYRIGLTKEQVRRIALSKLKIVYRDWDFAKGPFSHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR*
Ga0137392_102131713	3300011269	Vadose Zone Soil	MGLEGRVGLTKEEIRRIVLSKLRIVYRDWRFTKGPFWHRAPKAGQRRMDARSFERALVAGLLGGLSEAIEKNNQELFTALGRRG
Ga0137392_108806761	3300011269	Vadose Zone Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGPRDPNAGRRREDAPSFETALVAALLGGLSEAIEKNNEALFTALGRKERRMRGKVQAQRRKR*
Ga0137391_101859072	3300011270	Vadose Zone Soil	MAQARRGLTKEQVRRIVLGKLKIVYRDWQSKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALERKDHRTRVKAPGKRRKR*
Ga0137391_109690792	3300011270	Vadose Zone Soil	MGLEGRVGLTKEEIRRIVLSKLRIVYRDWRFTKGPFWHRAPKAGQRRMDARSFERALVAGLLGGLSEAIEKNNQELFTALGRRGECVRRMPPSVGTDKR*
Ga0137388_100642757	3300012189	Vadose Zone Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRRENAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDSRMRSKVQAQRRKR*
Ga0137365_101766462	3300012201	Vadose Zone Soil	MAFRGRVGLTKEQIRRIVLSKLKIVYRDWRFNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTSLGRKTQRVRAKGLV
Ga0137363_100171692	3300012202	Vadose Zone Soil	MAQARRGLTKEQVRRIVLGKLKIVYRDWQSKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALERKERRTRVKAPGKRRNR*
Ga0137363_100503883	3300012202	Vadose Zone Soil	MASTYRIGLTKEQVRRIALSKLKIVYRDWDFAKGPFSHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRNDQRRKAHSKRRKR*
Ga0137399_102349061	3300012203	Vadose Zone Soil	MASKYRIGLTKEQVRRIALSKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR*
Ga0137374_1000127225	3300012204	Vadose Zone Soil	MTKNIGLTKEQIRRIVLSKVKIVYRDWRSKESPFSNRRRSGNRRNAPQAFETALVASLLGGLSEAMEKNNRVLASALGHAARSPRAKAQAKRRKR*
Ga0137374_112874011	3300012204	Vadose Zone Soil	ICSLTRTPRLQVEGEDMLMKVGIGLTKEQIRRIVLTKLKIVYRDWRFKDNPFSNRRRSGNRQNDARAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR*
Ga0137362_101135272	3300012205	Vadose Zone Soil	MAQARRGLTKEQVRRIVLGKLKIVYRDWQSKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALERKDHRTRVKAPGKRRNR*
Ga0137381_104670212	3300012207	Vadose Zone Soil	MPFRGRVGLKKEQVRRIVLAKLRIVYRDWRLMNRPFGRRDPNAGRRREDAQSFETALVATLLGGLSEAIEKNNEALFTALGRKDRRMRRK
Ga0137379_100494721	3300012209	Vadose Zone Soil	VLSKLKIVYRDWRFNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTSLGRKTQRVRAKGLAKGRRR*
Ga0137377_102864914	3300012211	Vadose Zone Soil	MAFRGRVGLTKEQIRRIVLSKLKIVYRDWTFNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTSLGRKTQRVRAKGLAKGRRR*
Ga0137386_102501812	3300012351	Vadose Zone Soil	MAFRGRVGLTKEQIRRIVLSKLKIVYRDWRFNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTSLGRKTQRVRAKGLVKGRRR*
Ga0137360_111926621	3300012361	Vadose Zone Soil	MAFKYRIGVTKEQVRRIALSKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR*
Ga0137390_102453663	3300012363	Vadose Zone Soil	MGLEGRVGLTKEEIRRIVLSKLRIVYRDWRFTKGPFWHRAPKAGQRRMDARSFERALVAGLLGGLSEAIEKDNQELFTALGRRGQRMRAKDAAKRRNR*
Ga0137358_101339231	3300012582	Vadose Zone Soil	MASKYRIGLTKEQVRRIALSKLKIVYRDWDFANGPFSHREPKGGQRRIDARSFETALPAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR*
Ga0137397_104354952	3300012685	Vadose Zone Soil	MAKKSRVGLSKEEIRRIVLSKLRIVYRDWRLKNGPFWQREPKAGQRRNDARAFETALVAGLLGGLSEAIEKNNHALFTALGRKDRLMRKKVPTKRRKR*
Ga0137395_108560801	3300012917	Vadose Zone Soil	MAQARRGLAKEQVRRIVLGKLKIVYRDWQSKDNPFSNRRRSGNRRNDARAFETALVAGLLGGLSEAIEKNNHALLTALGPKDRRMR
Ga0137396_102234682	3300012918	Vadose Zone Soil	MASKYRIGLTKEQVRRIALSKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALG
Ga0137394_1000366315	3300012922	Vadose Zone Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPLGRRDPNAGRRRENAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR*
Ga0153915_100840412	3300012931	Freshwater Wetlands	MLMKVGIGLTKEQIRRIVLTKLKIVYRDWRFKDNPFSNRRRSGNRQNDARAFETALVAGLLGGLSEAIEKNNRALLTALGRKDRRMRAKVPGKRRKR*
Ga0153915_101775051	3300012931	Freshwater Wetlands	MAFKDRIGLTKEQVRRIVLSKLKIVYRDWAFAKGPFWHREPKAGQRRIDPRSFETALLAALLGGLAEAIEKNNQVLFAALGRENQRRKNHTRRRKR*
Ga0153915_107107441	3300012931	Freshwater Wetlands	MLMKASIGLTKEQIRRIVLTKLKIVYRDWRVKDNPFSNRRRSGNRQNDARAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR*
Ga0153915_116895971	3300012931	Freshwater Wetlands	MPMRRTGSLGLTKEQIRRVVLAKLKVVYRDWNFEDNPFSNRRRSGNRQNASGAFDAALIAGLLGGLSEAIELNNQALLTALGRKDLRMRAKAHGKRRKR*
Ga0164300_108446101	3300012951	Soil	LTKEQVRRIALSKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR*
Ga0164303_104879732	3300012957	Soil	MASKYRIGLTKEQVRRIALSKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGIEKNNQVLFTALGRKDQRRKAHTKWRKR*
Ga0180094_10180713	3300014881	Soil	MLMKASIGLTKEQIRRIVLTKLKIVYRDWRFKDNPFSNRRRSGNRQNDARAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR*
Ga0180104_10035872	3300014884	Soil	MLMKASIGLTKEQIRRIVLTKLKIVYRDWRFKDNPFSNRRRSGNRQNDARAFETALVAGLLGGLSEAIEKNNHALLTALGRKDLRMRAKAHGKRRKR*
Ga0184610_10288493	3300017997	Groundwater Sediment	MAKKSRVGLSKEEIRRIVLSKLRIVYRDWRLKNGPFWQREPKAGQRRNDARAFETALLAALLGGLSEAIERNNQALVTTLGRKDRLMRMKVPTKRRKR
Ga0184623_100687123	3300018056	Groundwater Sediment	MAKKSRVGLRKEEIRRIVLSKLRIVYRDWRFKNGPFWQREPKAGQRRNDARAFETALLAALLGGLSEAIERNNQALVTTLGRKDRLMRMKVPTKRRKR
Ga0184615_104656392	3300018059	Groundwater Sediment	MLMKASIGLTKEQIRRIVLTKLKIVYRDWRFKDNPFSNQRRSGNRQNDARAFETALVAGLLGGLSEAIEKNNHAILTALGRKDRRMRAK
Ga0184637_100513773	3300018063	Groundwater Sediment	MRPYGRVGLTKEQVRRMVLSKLRIVYRDWRFANGPFWRHDRKAGRRREDGQSFETALVAALLGGLSEAIEKNNHALFTALGRKDQRMRLKAAKRRKR
Ga0184609_100160644	3300018076	Groundwater Sediment	MAKKSRVGLSKEEIRRIVLSKLRIVYRDWRLKNGPFWQREPKAGQRRNDARAFETALLAALLGGLSEAIEKNNHALFTALGHKDRLMRKKVPTKRRKR
Ga0193707_10035206	3300019881	Soil	MAKKSRVGLSKEEIRRIVLSKLRIVYRDWRLKNGPFWQREPKAGRRRNDARAFETALLAALLGGLSEAIEKNNHALFTALGRKDRLMRKKVPTKRRKR
Ga0193713_10444443	3300019882	Soil	MAKKSRVGLSKEEIRRIVLSKLRIVYRDWRLKNGPFWQREPKAGQRRHDARAFETALLAALLGGLSEAIEKNNHALFTALGRKDRLMRKKVPTKRRKR
Ga0193727_11092002	3300019886	Soil	VLSKLRIVYRDWRLKNGPFWQREPKAGRRRNDARAFETALLAALLGGLSEAIEKNNHALFTALGRKDRLMRKKVPTKRRKR
Ga0193755_11413052	3300020004	Soil	MAKKSRVGLSKEEIRRIVLSKLRIVYRDWRLKNGPFWQREPKAGQRRNDARAFETALLAALLGGLSEAIEKNNHALFTALGRKDRLMRKKVPTKRRKR
Ga0210404_100204252	3300021088	Soil	MSPRSRVGLTKEQVRRIVLSKLRIVYRDWHSEQGPFWHPAPKAGQRRSDARSLDTALLAALLGGLSEAIEKNNQALITALGRKDQRMRLKGVKRRKR
Ga0210404_100451333	3300021088	Soil	MPFRGRGGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKDRRMRRK
Ga0210408_100209478	3300021178	Soil	MSPRSRVGLTKEQVRRIVLSKLRIVYRDWHSEQGPFWHRAPKAGQRRSDARSFDTALLAALLGGLSEAIEKNNQALITALGRKDQRMRLKAVKRRKR
Ga0193699_103269731	3300021363	Soil	MAKKSRVGLSKEEIRRIVLSKLRIVYRDWRLKNGPFWQREPKAGQRRHDARAFETALLAALLGGLSEAIEKNNHALFTALGRKDRLMRKKVPT
Ga0210384_104186381	3300021432	Soil	MAFKYRIGLTKEQVRRIALLKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR
Ga0210410_106558612	3300021479	Soil	MSPRSRVGLTKEQVRRIVLSKLRIVYRDWHSEQGPFWHRAPKAGQRRSDARSFDTALLAALLGGLSEAIEKNNQALITALGRKDQRMRLKGVKRRKR
Ga0242665_101430831	3300022724	Soil	MPFGGRVGLTKEQPRRIVLAKLRIVYRDWRLPNRPFGRRDPNAGRRREDAQAFETALVAALLGGLSEAIEKNNQALFTALGRKAAN
Ga0209109_100662553	3300025160	Soil	MLTKVGIGLTKEQIRRIVLSKLKIVYRDWRFKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALGRKDQRMRAKAPGKRRKR
Ga0209751_102725382	3300025327	Soil	MLTKVGIGLTKEQIRRIVLSKLKIVYRDWRFKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALGRFQTLVH
Ga0207684_1000408814	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MASNGRIGLTKEQVRRIVLSKLKIVYRDWHFKKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALFTTLGRKNQRVRMKVHAKRRKG
Ga0207684_100084564	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSPRSRVGLTKEQVRRIVLSKLRIVYRDWHSEQGPFWHRAPKAGQRRSDAGSFDTALLAALLGGLSEAIEKNNHALFTALGRKDQRMRLKAVKRRKR
Ga0207684_100106398	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MALKGRVGITKEEIRRIVLSKLRIVYRGWHFKNGPFWHREPKAGQRRNDARSFETALLAGLLGGLSEAIEKNNHALFTALWRKDQRMRMKVHAKRRKR
Ga0207684_100120498	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MASRGRIGLTKEQVRRIVLSKLKIVYRDWRFKSSPFWHRGHRAGERRDDARSFDIALVAALLGGLSEAIEKNNQTLYTALGRKDDNMRRKRQAKPRWTR
Ga0207646_100543164	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MALKGRVGITKEEIRRIVLSKLRIVYRDWHFKNGPFWHREPKAGQRRNDARSFETALLAGLLGGLSEAIEKNNHALFTALGRKDQRMRMKGHAKRRKR
Ga0207646_100562993	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKKVGIGLTKEQVRRIVLDKLKVVYRDWQSRDNPFSNRRRSGNRGNDARAFETALVAGLLGGLSEAIEKNNHLLLTALGRKDRRMRAKAQAKRRKR
Ga0207646_102386452	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEKKSRVGLRKEEIRRIVLSKLRIVYRDWRFKNGPFWHKEPKAGQRRNDARAFETALLAALLGGLSEAIEKNNQALLTTLGRKNRLMRMKVQTKRRKR
Ga0207646_102554012	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAIKGRVGLTKERVRRIVLSKLKIVYRDWHFTKDPFWYREPKGGHRRSDPRSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRVRMKVHTKRRKR
Ga0207709_116850422	3300025935	Miscanthus Rhizosphere	MVFRGRAGLTKEQVRRIVLAKLRIVYRDWRLTNDPFGRRDPDAGRRRDDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKDQRMRM
Ga0209438_10075723	3300026285	Grasslands Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRRENAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR
Ga0209438_10678503	3300026285	Grasslands Soil	KLRIVYRDWRLKNGPFWQREPKAGQRRNDARAFETALVAGLLGGLSEAIEKNNHALFTALGRKDRLMRKKVPTKRRKR
Ga0257148_10001743	3300026345	Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGQRREDAQSFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR
Ga0257177_10102782	3300026480	Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR
Ga0257155_10086012	3300026481	Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQAFDTALVAALLGGLSEAIEKNNQALFTALGRKDRRMRRKGQAQR
Ga0257153_11246421	3300026490	Soil	VLAKLRIVYRDWRLTNRPFGRRDPNAGRRRENAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR
Ga0257165_10008681	3300026507	Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKDRRMRRKVQAQRR
Ga0257158_10839102	3300026515	Soil	MPFRGRVGLSKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNEALFTALGRKDRGMRRKVQAQPRKR
Ga0209056_105685482	3300026538	Soil	MAFRGRVGLTKEQIRRIVLSKLKIVYRDWRFNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTSLGRKTQRVRAKGLAKGRRR
Ga0209648_103831142	3300026551	Grasslands Soil	MPPERAACMAQARRGLTKEQVRRIVLGKLKIVYRDWQSKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALERKDHRTRVKAPGKRRKREEQARLSEGEWFK
Ga0209117_10568142	3300027645	Forest Soil	VPFRGRVGLTKEQGRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKDRRMR
Ga0209388_11075741	3300027655	Vadose Zone Soil	MAFKYRIGLTKEQVRRIALSKLKIVYRDWDFAKGPFWHREPKAGQRRIDARSFETALLAALLGGLSEAIEKNNQVLFTALGRKDQRRKAHTKRRKR
Ga0209388_11459071	3300027655	Vadose Zone Soil	PSSSIPGPIGSRESARMPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRRENAQAFETALVAALLGGLSEAIEKNNEALFTALGRKDPRMRRKVQAQRRKR
Ga0209180_101888462	3300027846	Vadose Zone Soil	MAQARRGLTKEQVRRIVLGKLKIVYRDWQSKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALERKDHRTRVKAPGKRRKR
Ga0209701_100197941	3300027862	Vadose Zone Soil	KVGIGLTKEQVRRIVLAKLKIVYRDWQSKDNPFSNRRRARNRQNDGRAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR
Ga0209701_101597482	3300027862	Vadose Zone Soil	MKVGIGLTKEQVRRIVLAKLKIVYRDWQSMDNPFSNRRRSGNRGHEARAFETALVAGLLGGLSEAIEKNNHLLLTALGRKDRRMRAKTQAKRRKR
Ga0209283_100826572	3300027875	Vadose Zone Soil	MKVGIGLTKEQVRRIVLAKLKIVYRDWQSMDNPFSNRRRSGNRGHEARAFETALVAGLLGGLSEAIEKNNHLLLTELGRKDRRMRAKAQAKRRKR
Ga0209283_101763913	3300027875	Vadose Zone Soil	VRMKVGIGLTKEQVRRIVLAKLKIVYRDWQSKDNPFSNRRRARNRQNDGRAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR
Ga0209590_103367192	3300027882	Vadose Zone Soil	MAQARRGLTKEQVRRIVLGKLKIVYRDWESKDNPFSNRRRSGNRGHDARAFETALVAGPLGGLSEAIEKNNHALLTALERKDHRTRVKAPGKRRKR
Ga0307282_104127822	3300028784	Soil	MAFKGGVGLTKEQVRRIVLSKLKIVYRDWRFNKGPFWHREPKAGHRRSDPRSFETALLAALLGGLSEAIEKNNHALSTALGRRKQRVRIKAPAKARRR
Ga0307504_101207852	3300028792	Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAQSFGTALVTALLGGLSEAIEKNNEALLTALGRKDRGMRRKVQAQRRKR
(restricted) Ga0255311_11477351	3300031150	Sandy Soil	VRMKVGIGLTKEQVRRIVLAKLKIVYRDWQSKDNPFSNRRRSGNRGNDARAFETALVAGFLGGLSEAIEKNNHLLLTALGRKDRRMRAKAQVKRRKR
(restricted) Ga0255310_100353821	3300031197	Sandy Soil	ADPQPNADLTNSAKRTGVRMKVGIGLTKEQVRRIVLAKLKIVYRDWQSKDNPFSNRRRSGNRGNDARAFETALVAGFLGGLSEAIEKNNHLLLTALGRKDRRMRAKAQVKRRKR
Ga0307469_101476571	3300031720	Hardwood Forest Soil	MPFRGRVGLTKEQLRRIVPAKLRIVYRDWRLPNRPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTALGRKDRRMRRKV
Ga0307479_106091703	3300031962	Hardwood Forest Soil	MPFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNRPFGRRDPNAGRRREDAPSFETALVAALLGGLSEAIEKNNQALFTALGRKDRRMRRKVQAQRHKR
Ga0326597_1001120512	3300031965	Soil	MLTKVGAGLTKEQIRRIVLSKLKVVYRDWRFKDNPFSNRRRSGNRGHDARAFETALVAGLLGGLSEAIEKNNHALLTALGRKDQRMRAKAPGKRRKR
Ga0326597_106345511	3300031965	Soil	MSVKVGIGLTKEQVRRIVLGKLKIVYRDWRFKDNPFSNRRRSGNRGHDGQAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRMRAKAPGKRRKR
Ga0214472_1000189419	3300033407	Soil	MLVKVGIDLTKEQVRRIVLGKLKIVYRDWRFKDNPFWNRRRSGNRGHDGQAFETALVAGLLGGLSEAIEKNNHALLTALGRKDRRLRAKAPGKRRKR
Ga0326726_100139033	3300033433	Peat Soil	MVFRGRVGLTKEQVRRIVLAKLRIVYRDWRLTNDPFGRRDPNAGRRREDAQSFETALVAALLGGLSEAIEKNNQALFTALGRNDRRMRMKVQAHRRKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters