Metagenome / Metatranscriptome Family F069664

Basic Information
Family ID	F069664
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	63 residues
Representative Sequence	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLIMETSHV
Number of Associated Samples	82
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Eukaryota
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	69.92 %
% of genes from short scaffolds (< 2000 bps)	84.55 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Eukaryota (80.488 % of family members)
NCBI Taxonomy ID	2759
Taxonomy	All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (35.772 % of family members)
Environment Ontology (ENVO)	Unclassified (52.033 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (96.748 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1Ga0063233_100555651 2Ga0007787_100108921 3Ga0007787_104621271 4Ga0007748_114062601 5Ga0007742_108490571 6Ga0007752_110681951 7Ga0007758_112296782 8Ga0007758_112515261 9Ga0007761_111796251 10Ga0007761_112711622 11Ga0007760_100065452 12Ga0007763_101663551 13Ga0007854_101432791 14Ga0007757_101204601 15Ga0007757_114281132 16Ga0007759_100339582 17Ga0114337_13374671 18Ga0114962_103523781 19Ga0114963_104331112 20Ga0114968_106758201 21Ga0114972_100122484 22Ga0114958_102326112 23Ga0114958_102837902 24Ga0114958_104551072 25Ga0133913_102230087 26Ga0133913_113278004 27Ga0133913_126141243 28Ga0138277_10668173 29Ga0138277_11556101 30Ga0138281_10871071 31Ga0138272_10465102 32Ga0138285_11759001 33Ga0138273_11518743 34Ga0138288_10548321 35Ga0138289_10365711 36Ga0138289_10607832 37Ga0138289_10770404 38Ga0138289_11121391 39Ga0138289_11184673 40Ga0138289_11650794 41Ga0138289_12088521 42Ga0138276_10819221 43Ga0138279_10614971 44Ga0138291_10041144 45Ga0138291_10900311 46Ga0138291_11708661 47Ga0138287_10295711 48Ga0138287_11832161 49Ga0138287_12346632 50Ga0138290_10294903 51Ga0138290_10651034 52Ga0138283_11092041 53Ga0138280_11125261 54Ga0138275_11797441 55Ga0138292_10713324 56Ga0138269_11217974 57Ga0138269_13047721 58Ga0138269_13823142 59Ga0138286_13306074 60Ga0157558_1491412 61Ga0170791_105437254 62Ga0170791_111505701 63Ga0170791_117246771 64Ga0170791_118774291 65Ga0170791_131578461 66Ga0170791_131816544 67Ga0170791_147769032 68Ga0170791_159194272 69Ga0180032_10956651 70Ga0180034_11194772 71Ga0180034_11400112 72Ga0194035_11262991 73Ga0210304_10109502 74Ga0214923_100214144 75Ga0214923_101068993 76Ga0214919_104536832 77Ga0255223_10010131 78Ga0255265_10207951 79Ga0255224_10985282 80Ga0256318_10226863 81Ga0255222_10050821 82Ga0255228_10034021 83Ga0255228_10995552 84Ga0255225_10153522 85Ga0255266_10306741 86Ga0255242_10183061 87Ga0255232_10207502 88Ga0255288_10236331 89Ga0255238_10092994 90Ga0256302_10063101 91Ga0255268_11366621 92Ga0255252_10071301 93Ga0255252_10164171 94Ga0255252_10171221 95Ga0256312_10158691 96Ga0256317_10102351 97Ga0256317_10149531 98Ga0256317_10226082 99Ga0256317_10230981 100Ga0256317_11169832 101Ga0255246_10117313 102Ga0256314_10500602 103Ga0255249_10138912 104Ga0255250_10683842 105Ga0255250_10923021 106Ga0208872_12883291 107Ga0256315_10166032 108Ga0255253_10619011 109Ga0256319_10755781 110Ga0256319_11049062 111Ga0256311_10067351 112Ga0255274_10933611 113Ga0255087_10334331 114Ga0209499_10981282 115Ga0209134_101390562 116Ga0255255_10150931 117Ga0255255_10325391 118Ga0255254_10263311 119Ga0256305_10044761 120Ga0255234_10375741 121Ga0256316_10197171 122Ga0255256_10157131 123Ga0304730_10555893
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1Ga0063233_100555651 2Ga0007742_108490571 3Ga0007752_110681951 4Ga0007757_114281132 5Ga0114972_100122484 6Ga0133913_102230087 7Ga0138269_11217974 8Ga0170791_117246771 9Ga0194035_11262991 10Ga0255265_10207951 11Ga0255288_10236331 12Ga0255268_11366621
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1Ga0063233_100555651 2Ga0007742_108490571 3Ga0007752_110681951 4Ga0007757_114281132 5Ga0114972_100122484 6Ga0133913_102230087 7Ga0138269_11217974 8Ga0170791_117246771 9Ga0194035_11262991 10Ga0255265_10207951 11Ga0255288_10236331 12Ga0255268_11366621
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 73.33% β-sheet: 0.00% Coil/Unstructured: 26.67%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF00119	ATP-synt_A	65.04
PF00329	Complex1_30kDa	7.32
PF00115	COX1	4.07
PF00146	NADHdh	3.25
PF00420	Oxidored_q2	1.63
PF00164	Ribosom_S12_S23	0.81
PF00361	Proton_antipo_M	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0356	FoF1-type ATP synthase, membrane subunit a	Energy production and conversion [C]	65.04
COG0852	NADH:ubiquinone oxidoreductase 27 kD subunit (chain C)	Energy production and conversion [C]	7.32
COG3262	Ni,Fe-hydrogenase III component G	Energy production and conversion [C]	7.32
COG0650	Formate hydrogenlyase subunit HyfC	Energy production and conversion [C]	3.25
COG1005	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	Energy production and conversion [C]	3.25

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.80 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.80 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	7.32 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	80.49 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.32 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	78.86 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	7.32 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	70.73 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Bigyra	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra	70.73 %
Perkinsozoa	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa	7.32 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Opalozoa	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa	70.73 %
Perkinsea	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea	7.32 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Bicosoecida	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida	70.73 %
Perkinsida	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida	7.32 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Cafileria	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria	41.46 %
Perkinsidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae	7.32 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Cafileria marina	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	41.46 %
Perkinsus	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus	7.32 %
Unclassified	root	N/A	12.20 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Cafileria marina	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	41.46 %
Unclassified	root	N/A	12.20 %
unclassified Perkinsus	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus	7.32 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.32 %
Cafileria marina	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	41.46 %
Perkinsus sp. BL_2016	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	7.32 %
Unclassified	root	N/A	12.20 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003986\|Ga0063233_10055565	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida	1108	Open in IMG/M
3300004240\|Ga0007787_10010892	Not Available	3625	Open in IMG/M
3300004240\|Ga0007787_10462127	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	634	Open in IMG/M
3300004769\|Ga0007748_11406260	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	1363	Open in IMG/M
3300004788\|Ga0007742_10849057	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	1052	Open in IMG/M
3300004789\|Ga0007752_11068195	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	770	Open in IMG/M
3300004790\|Ga0007758_11229678	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	1293	Open in IMG/M
3300004790\|Ga0007758_11251526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	891	Open in IMG/M
3300004792\|Ga0007761_11179625	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	1279	Open in IMG/M
3300004792\|Ga0007761_11271162	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Bigyra → Opalozoa → Bicosoecida → Cafileria → Cafileria marina	1312	Open in IMG/M

Showing 1 to 10 of 120 entries

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	96.75%
Marine	Environmental → Aquatic → Marine	3.25%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.25%
Lake	Environmental → Aquatic → Freshwater → Lake	47.15%
Lentic	Environmental → Aquatic → Freshwater → Lentic	14.63%
River	Environmental → Aquatic → Freshwater → River	34.96%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.25%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	47.15%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	34.96%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	14.63%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.81%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.25%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	34.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.50%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.25%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.63%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	35.77%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	13.01%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.81%

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003986	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN (v2)	Environmental	Open in IMG/M
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental	Open in IMG/M
3300004769	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004788	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004789	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004790	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004792	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004793	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004796	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004806	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063233_100555651	3300003986	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQVSSSSIFKI*
Ga0007787_100108921	3300004240	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAEQVSSSSIFKI*
Ga0007787_104621271	3300004240	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETG
Ga0007748_114062601	3300004769	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSASSLFTN*
Ga0007742_108490571	3300004788	Freshwater Lake	MPQLDIDLLEDFLFFAFAAFMLGFGDEESEENAIERSCDAHLATHYFSTIKALT
Ga0007752_110681951	3300004789	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSE
Ga0007758_112296782	3300004790	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSSS
Ga0007758_112515261	3300004790	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSSASIFHKTANLFN*
Ga0007761_111796251	3300004792	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYL
Ga0007761_112711622	3300004792	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTH
Ga0007760_100065452	3300004793	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHV
Ga0007763_101663551	3300004796	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQVSSSSI
Ga0007854_101432791	3300004806	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMEASQVSASSIFNKIK*
Ga0007757_101204601	3300004810	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAA
Ga0007757_114281132	3300004810	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSASSLFRNLIKPKLLYDFVFMLNGR*
Ga0007759_100339582	3300004836	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAAS
Ga0114337_13374671	3300008262	Freshwater, Plankton	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAASIFSKN*
Ga0114962_103523781	3300009151	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSSSSIFNK*
Ga0114963_104331112	3300009154	Freshwater Lake	KMPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSASSLFTN*
Ga0114968_106758201	3300009155	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSSIFTKLIQKY*
Ga0114972_100122484	3300009187	Freshwater Lake	MPQLDIDLLEDFLFFAFTALFLGFGDEESEENVIEMFSEMHLAHYYLSTRASLIEETSIISYEIASNK*
Ga0114958_102326112	3300009684	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKKKSLITEANQVSSSSIFKLLKIGKR*
Ga0114958_102837902	3300009684	Freshwater Lake	MPQLDIDLLEDFLFFAFAALMLGFGDEDSEENAIAISSEAHLAQYYLSTRKLLREESLLVEASSIFKS*
Ga0114958_104551072	3300009684	Freshwater Lake	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIESSSDAYLAQYYISKQKSLIIEASQVSSSYIFTK
Ga0133913_102230087	3300010885	Freshwater Lake	MPQLDIDLLEDFLFFAFIAFLLGFGDEDSEENVIERATDAYLGQYYLSTRKTLNAESVIVAKAPGASFN*
Ga0133913_113278004	3300010885	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKALIVETGQVSSSSLFN*
Ga0133913_126141243	3300010885	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMVEASQVSASSIFNKIK*
Ga0138277_10668173	3300012751	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAASIFTK
Ga0138277_11556101	3300012751	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQV
Ga0138281_10871071	3300012755	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKS
Ga0138272_10465102	3300012756	Freshwater Lake	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENAIEISSEAHLAQYYLSTRKLLREESLLVEASSIFKA*
Ga0138285_11759001	3300012758	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLIME
Ga0138273_11518743	3300012760	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMIETSQ
Ga0138288_10548321	3300012761	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMVEASQVSASSIF
Ga0138289_10365711	3300012763	Freshwater Lake	MPQLDIDLLEDFLFFAFIAFLLGFGDEDSEENVIERATDAYLGQYYLSTRKTLNAES
Ga0138289_10607832	3300012763	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLIMETSHV
Ga0138289_10770404	3300012763	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLRIEVSQVSSSSIFTKIK*
Ga0138289_11121391	3300012763	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSSIFTKLNLKL
Ga0138289_11184673	3300012763	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKKKSLITE
Ga0138289_11650794	3300012763	Freshwater Lake	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKSLIIEANQVSSSYIFTKKI*
Ga0138289_12088521	3300012763	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLIMETSHVST
Ga0138276_10819221	3300012768	Freshwater Lake	MPQLDIDLLEDFLFFAFTALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQV
Ga0138279_10614971	3300012769	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKKKSLITEANQVSSSSIFKLFKNKEEIR
Ga0138291_10041144	3300012770	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSSIFTKLKI*
Ga0138291_10900311	3300012770	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAASIFTKA
Ga0138291_11708661	3300012770	Freshwater Lake	MPQLDIDLLEDFMFFAFAALLLGFGDEESEENVIERSSEIYLAQYYLSTR
Ga0138287_10295711	3300012772	Freshwater Lake	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKSLIIEANQV
Ga0138287_11832161	3300012772	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETRQVSASSLFTN*
Ga0138287_12346632	3300012772	Freshwater Lake	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENAIEISSEAHLAQYYLSTRKLLREESLLVEASSIFKS*
Ga0138290_10294903	3300012773	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLS
Ga0138290_10651034	3300012773	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKKK
Ga0138283_11092041	3300012774	Freshwater Lake	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKSLI
Ga0138280_11125261	3300012775	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLRIEVSQV
Ga0138275_11797441	3300012776	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLSMEAGQVSASSIFTKLK
Ga0138292_10713324	3300012777	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKALIVETGQVSSSS
Ga0138269_11217974	3300012778	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSSIFTKLNLKSLINRFT*
Ga0138269_13047721	3300012778	Freshwater Lake	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIESSSDAYLAQYYISKQKSLIIEAS
Ga0138269_13823142	3300012778	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMIEASQ
Ga0138286_13306074	3300012781	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAASIFTKN*
Ga0157558_1491412	3300013063	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSV
Ga0170791_105437254	3300013295	Freshwater	YRMPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSSIFTKLNLKSLINRFT*
Ga0170791_111505701	3300013295	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVST
Ga0170791_117246771	3300013295	Freshwater	EDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAASIFTKN
Ga0170791_118774291	3300013295	Freshwater	MPQLDIDLLEDFLFFAFTALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQVSSSS
Ga0170791_131578461	3300013295	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLIMETSHVSTSSIF
Ga0170791_131816544	3300013295	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLI
Ga0170791_147769032	3300013295	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYL
Ga0170791_159194272	3300013295	Freshwater	MPQLDIDLLEDFMFFAFAALLLGFGDEESEENVIERSSEIYLAQYYLSTRK
Ga0180032_10956651	3300019201	Estuarine	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQVSS
Ga0180034_11194772	3300019207	Estuarine	MPQLDIDLLEDFLFFAFIAFLLGFGDEDSEENVIERATDAYLGQYYLSTRKTLNA
Ga0180034_11400112	3300019207	Estuarine	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETT
Ga0194035_11262991	3300020167	Anoxic Zone Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKKKSLITEANQVSSSSIFKLFKNKEEIRDSLNLFIIRQN
Ga0210304_10109502	3300021849	Estuarine	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSSSSIFNK
Ga0214923_100214144	3300023179	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSSIFTKLKFKMLTLTP
Ga0214923_101068993	3300023179	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQVSSSSIFKI
Ga0214919_104536832	3300023184	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKKKSLITEANQVSSSSIFKLLKIGKR
Ga0255223_10010131	3300024480	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEA
Ga0255265_10207951	3300024482	Freshwater	MPQLDLDILEDFLFFAFASFLLGFGDEETEENAINRQTDAHLAQYYISTQKRLRAETALLIKTPRIS
Ga0255224_10985282	3300024483	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLM
Ga0256318_10226863	3300024485	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITET
Ga0255222_10050821	3300024487	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQV
Ga0255228_10034021	3300024531	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQVSSS
Ga0255228_10995552	3300024531	Freshwater	MPQLDIDLLEDFLFFAFAAFILGFGDEESEENVIERSSEIYLAQYYLSKQKSLMMETSHVSTSSIFTKLKF
Ga0255225_10153522	3300024537	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAE
Ga0255266_10306741	3300024550	Freshwater	MPQLDLDILEDFLFFAFASFLLGFGDEETEENAINRQTDAHLAQYYISTQKRLRAETALLIKTPR
Ga0255242_10183061	3300024554	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAEQVSSSSIFKI
Ga0255232_10207502	3300024558	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQ
Ga0255288_10236331	3300024561	Freshwater	MPQLDIDLLEDFLFFAFTAILLGFGDEESEENAIDSSVESYLAQYYLSTTSNIQEES
Ga0255238_10092994	3300024568	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAGQVSSSS
Ga0256302_10063101	3300024571	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAG
Ga0255268_11366621	3300024572	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEESEENVVERFSESHLAQYYISTRKTLRE
Ga0255252_10071301	3300024853	Freshwater	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKSLIIE
Ga0255252_10164171	3300024853	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITE
Ga0255252_10171221	3300024853	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVE
Ga0256312_10158691	3300024861	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHV
Ga0256317_10102351	3300024862	Freshwater	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKSHQPHQEA
Ga0256317_10149531	3300024862	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSASSLFTN
Ga0256317_10226082	3300024862	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSAASIFSKN
Ga0256317_10230981	3300024862	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSS
Ga0256317_11169832	3300024862	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQVSSSSIF
Ga0255246_10117313	3300024863	Freshwater	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKSLIIEAN
Ga0256314_10500602	3300025749	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMETSHVSTSSIFTKLIQKY
Ga0255249_10138912	3300025760	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAEQ
Ga0255250_10683842	3300025763	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKT
Ga0255250_10923021	3300025763	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQK
Ga0208872_12883291	3300025838	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMMEASQVSASSIFNKIK
Ga0256315_10166032	3300026417	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKS
Ga0255253_10619011	3300026429	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSSASIFHKTA
Ga0256319_10755781	3300026454	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSSASIFHK
Ga0256319_11049062	3300026454	Freshwater	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKS
Ga0256311_10067351	3300026565	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAEQVSS
Ga0255274_10933611	3300026570	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEESEENAIERSSEAYLAQYYLSTRKAR
Ga0255087_10334331	3300027337	Freshwater	KNLIYIXMPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAEQVSSSSIFKI
Ga0209499_10981282	3300027712	Freshwater Lake	MPQLDIDLLEDFLFFAFAALMLGFGDEDSEENAIAISSEAHLAQYYLSTRKLLREESLLVEASSIFKS
Ga0209134_101390562	3300027764	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALI
Ga0255255_10150931	3300028085	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVET
Ga0255255_10325391	3300028085	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKALITETTHVSSASIFHKTANLFN
Ga0255254_10263311	3300028105	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENVIESSSDAYLAQYYLSKQKSLMVEASQVSAS
Ga0256305_10044761	3300028108	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAEQV
Ga0255234_10375741	3300028113	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIESSSDAYLAQYYLSKQKTLSVEAEQVSSSSIF
Ga0256316_10197171	3300028261	Freshwater	MPQLDIDLLEDFLFFAFAALILGFGDEDSEENVIENSSDAYLAQYYISKQKSLII
Ga0255256_10157131	3300028271	Freshwater	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIV
Ga0304730_10555893	3300028394	Freshwater Lake	MPQLDIDLLEDFLFFAFAALLLGFGDEDSEENAIERSSDAYLAQYYLSEQKSLIVETGQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069664

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences