Metagenome Family F069634

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069634
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	53 residues
Representative Sequence	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Number of Associated Samples	83
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	40.83 %
% of genes near scaffold ends (potentially truncated)	36.59 %
% of genes from short scaffolds (< 2000 bps)	81.30 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (63.415 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (52.033 % of family members)
Environment Ontology (ENVO)	Unclassified (52.033 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (86.992 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1Iowa-Corn-GraphCirc_02332620 2ICChiseqgaiiDRAFT_06392822 3ICChiseqgaiiFebDRAFT_142244182 4JGI12377J11919_1010671 5JGI12334J11920_1014132 6JGI12540J11931_1021271 7JGI12493J11910_1007611 8JGI12340J11893_1034751 9JGI12374J11875_1031941 10JGI12331J11884_1021661 11JGI12371J11900_10059273 12JGI12408J11912_10038303 13JGI12535J11911_10209412 14JGI12488J12863_1109242 15soilH2_103999962 16Ga0062593_1001236122 17Ga0062589_1000236543 18Ga0063356_1048760402 19Ga0062594_1005419233 20Ga0066793_103407181 21Ga0182036_104862422 22Ga0182036_106880921 23Ga0182036_114737761 24Ga0182041_104318131 25Ga0182033_101186271 26Ga0182035_100871063 27Ga0182035_110754121 28Ga0182035_117552772 29Ga0182032_100455742 30Ga0182034_102636332 31Ga0182034_105699173 32Ga0182034_109902201 33Ga0182034_114120091 34Ga0182037_103925581 35Ga0182039_115217622 36Ga0182038_115914491 37Ga0182038_117523863 38Ga0187777_102424261 39Ga0187777_106322422 40Ga0187766_111489562 41Ga0187766_113561201 42Ga0207725_1023771 43Ga0207778_1019061 44Ga0207742_1006363 45Ga0207742_1052522 46Ga0207742_1147642 47Ga0207737_1110921 48Ga0207801_1058602 49Ga0207801_1069022 50Ga0207775_1009384 51Ga0207738_1034704 52Ga0207738_1116902 53Ga0207728_1006312 54Ga0207728_1026081 55Ga0207764_1164192 56Ga0207802_10002995 57Ga0207802_10008212 58Ga0207802_10061692 59Ga0207729_1004982 60Ga0207823_1024131 61Ga0207724_10003628 62Ga0207746_10013992 63Ga0207785_10232982 64Ga0207763_10264731 65Ga0207739_10046192 66Ga0207805_10259242 67Ga0207781_10168072 68Ga0207788_10001086 69Ga0207788_10074361 70Ga0207787_10062883 71Ga0207744_10065881 72Ga0207836_10127832 73Ga0207783_10009482 74Ga0207783_10085021 75Ga0207783_10121641 76Ga0207722_10059314 77Ga0207740_10346191 78Ga0207776_10176351 79Ga0207776_10467121 80Ga0207800_10519541 81Ga0207726_10029611 82Ga0207762_10460182 83Ga0207780_10097941 84Ga0207780_10220051 85Ga0207780_10617691 86Ga0207777_10617292 87Ga0207761_10052846 88Ga0207761_10105911 89Ga0207761_11103681 90Ga0207826_12166721 91Ga0207862_10143433 92Ga0207862_10611561 93Ga0207862_10905192 94Ga0207862_12304921 95Ga0255311_11313841 96Ga0318541_104358192 97Ga0318538_107011911 98Ga0318501_107210271 99Ga0306918_107309191 100Ga0318509_108614911 101Ga0306925_104303321 102Ga0306925_107367621 103Ga0318520_108954672 104Ga0306923_102500591 105Ga0306923_122696602 106Ga0306923_124349901 107Ga0306923_124395931 108Ga0306921_121719172 109Ga0310912_114847513 110Ga0310916_100511636 111Ga0310916_113193972 112Ga0310916_114202251 113Ga0310916_116061792 114Ga0310910_103942151 115Ga0318533_114288872 116Ga0306924_116915981 117Ga0306920_1003971873 118Ga0306920_1008709271 119Ga0306920_1011055223 120Ga0306920_1011244651 121Ga0306920_1027587782 122Ga0310914_103716754 123Ga0310914_105426861
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1Iowa-Corn-GraphCirc_02332620 2JGI12377J11919_1010671 3JGI12334J11920_1014132 4JGI12540J11931_1021271 5Ga0062593_1001236122 6Ga0062589_1000236543 7Ga0066793_103407181 8Ga0182036_104862422 9Ga0182035_100871063 10Ga0182035_117552772 11Ga0182034_109902201 12Ga0207802_10008212 13Ga0310914_105426861
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. 1JGI12408J11912_10038303 2ICChiseqgaiiDRAFT_06392822 3ICChiseqgaiiFebDRAFT_142244182 4JGI12493J11910_1007611 5JGI12371J11900_10059273 6soilH2_103999962 7Ga0062589_1000236543 8Ga0062594_1005419233 9Ga0066793_103407181 10Ga0182036_106880921 11Ga0182035_100871063 12Ga0182035_110754121 13Ga0182034_102636332 14Ga0182034_109902201 15Ga0182039_115217622 16Ga0182038_115914491 17Ga0187777_102424261 18Ga0187766_113561201 19Ga0207738_1116902 20Ga0207764_1164192 21Ga0207746_10013992 22Ga0207763_10264731 23Ga0207762_10460182 24Ga0207761_10105911 25Ga0207826_12166721 26Ga0207862_10143433 27Ga0306923_122696602
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.15% β-sheet: 0.00% Coil/Unstructured: 51.85%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF03401	TctC	3.25
PF13683	rve_3	2.44
PF08281	Sigma70_r4_2	1.63
PF03779	SPW	1.63
PF04234	CopC	1.63
PF08734	GYD	1.63
PF00226	DnaJ	0.81
PF13817	DDE_Tnp_IS66_C	0.81
PF03466	LysR_substrate	0.81
PF13924	Lipocalin_5	0.81

Showing 1 to 10 of 22 entries

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COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.25
COG2372	Copper-binding protein CopC (methionine-rich)	Inorganic ion transport and metabolism [P]	1.63
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.63
COG0853	Aspartate 1-decarboxylase	Coenzyme transport and metabolism [H]	0.81
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.81
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.81
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.81
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.81
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.81

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.59 %
Unclassified	root	N/A	63.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	36.59 %
Unclassified	root	N/A	63.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.59 %
Unclassified	root	N/A	63.41 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.76 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.63 %
Unclassified	root	N/A	63.41 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.51 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.81 %
Unclassified	root	N/A	63.41 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.81 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.81 %
Unclassified	root	N/A	63.41 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.25 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.63 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.81 %
Unclassified	root	N/A	63.41 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.25 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.63 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.81 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.81 %
Unclassified	root	N/A	63.41 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.81 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.63 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.81 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.81 %
Unclassified	root	N/A	63.41 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300031150\|Ga0255311_1131384	Not Available	551	Open in IMG/M
2140918013\|NODE_10648_length_1061_cov_6.983035	Not Available	1093	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0639282	Not Available	1244	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14224418	Not Available	517	Open in IMG/M
3300000678\|JGI12377J11919_101067	Not Available	533	Open in IMG/M
3300000682\|JGI12334J11920_101413	Not Available	602	Open in IMG/M
3300000683\|JGI12540J11931_102127	Not Available	525	Open in IMG/M
3300000697\|JGI12493J11910_100761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	912	Open in IMG/M
3300000701\|JGI12340J11893_103475	Not Available	500	Open in IMG/M
3300000706\|JGI12374J11875_103194	Not Available	592	Open in IMG/M

Showing 1 to 10 of 120 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	0.81%
Terrestrial	Environmental → Terrestrial	99.19%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%
Soil	Environmental → Terrestrial → Soil	99.19%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Loam	Environmental → Terrestrial → Soil → Loam	52.03%
Sand	Environmental → Terrestrial → Soil → Sand	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.06%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	52.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.44%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.25%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.81%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.81%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.44%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	52.03%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.25%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000678	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46	Environmental	Open in IMG/M
3300000682	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59	Environmental	Open in IMG/M
3300000683	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60	Environmental	Open in IMG/M
3300000697	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71	Environmental	Open in IMG/M
3300000701	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4	Environmental	Open in IMG/M
3300000706	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65	Environmental	Open in IMG/M
3300000716	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66	Environmental	Open in IMG/M

Showing 1 to 10 of 83 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02332620	2140918013	Soil	MEIGIHEPNRLAVIVSLSLAVLAIIAHFVGSPLAFWIAMFAYVVGALSVLVKT
ICChiseqgaiiDRAFT_06392822	3300000033	Soil	MEIGIHEPNRLAVIVSLSLAVLAIIAHFVGSPLAFWIAMFAYVVGALSVLVKT*
ICChiseqgaiiFebDRAFT_142244182	3300000363	Soil	MEIGIHEPNKLAVIVSLLLAILAIIAHFVASPVAFWIAIFAYIVGALGVLVKT*
JGI12377J11919_1010671	3300000678	Tropical Forest Soil	KPPVVVSLLLAILALIAYFVNTPAAFWIAMFAYIVGAVGVITEI*
JGI12334J11920_1014132	3300000682	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYIIGALGVLVEI*
JGI12540J11931_1021271	3300000683	Tropical Forest Soil	MKIGIHAPDKPPVILSLLLAILAVAGYFVNAPAAFWIAMFAYIVGAAGVLVQI*
JGI12493J11910_1007611	3300000697	Tropical Forest Soil	MKIGIHAPDKPPVVVSLLLAILALIAYFVNTPAAFWIAMFAYIVGAVGVITEI*
JGI12340J11893_1034751	3300000701	Tropical Forest Soil	IHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYIIGALGVLVEI*
JGI12374J11875_1031941	3300000706	Tropical Forest Soil	VAKCSPRTRIMKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYIIGALGVLVEI*
JGI12331J11884_1021661	3300000716	Tropical Forest Soil	VKVGIHSPNKPPVVVSLLLAILALIGYSVDSSFAFFIAMFAYIVGALGVLVEI*
JGI12371J11900_10059273	3300000729	Tropical Forest Soil	VKVGIHSPNKPRVVVSLLLAILALIGYYVDSSFAFVIAMFAYIVGALGVLVEI*
JGI12408J11912_10038303	3300000733	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI*
JGI12535J11911_10209412	3300000734	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYLVGALSVLVEI*
JGI12488J12863_1109242	3300000909	Tropical Forest Soil	VKVXIHSPNKPPVVVSLLLAILALIGYSVDSSFAFFIAMFAYIVGALGVLVEI*
soilH2_103999962	3300003324	Sugarcane Root And Bulk Soil	MEIGIHEPNRLVVIVSLLLAVLAVIAQFVGSPMAIWIAMFAYVVGALGVLVKT*
Ga0062593_1001236122	3300004114	Soil	MIVVGEKPMEIGIHEPNKLAVIVSLLLAILAIIAQFVASPAAFWIAIFAYVVGAAGVLVKT*
Ga0062589_1000236543	3300004156	Soil	MVTVSVGGKTMEIGIHEPNRLVVIVSLVLAVLAVIAQFVASPLAFWIAIFAYLIGALGVLIKT*
Ga0063356_1048760402	3300004463	Arabidopsis Thaliana Rhizosphere	VLGGEAMEIGIHEPNKLAVIVSLLLAILAIIAHFVASPVAFWIAIFAYIVGALGVLVKT*
Ga0062594_1005419233	3300005093	Soil	MEIGIHEPSKPVIIVSLLLAGLAIVAQFAGSPLAFWIAIFAYLVGALGVLVKT*
Ga0066793_103407181	3300009029	Prmafrost Soil	MEIGIHTPSWAVVIVSLILAILALIGYFVGAPVLGFWIAIFAYVVGALGVMVKT*
Ga0182036_104862422	3300016270	Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFFVAMFAYIVGAL
Ga0182036_106880921	3300016270	Soil	MKIGIHAPSKPALVVSLLLAILALTGYFVDSSFAFFIAMVAYIVGGLGVLLKI
Ga0182036_114737761	3300016270	Soil	MKIGIHAPSKPALVISVLLVTLALIASFVDSSFAFFIATFAYIVGALGVLVEI
Ga0182041_104318131	3300016294	Soil	MKIGTNAPSKPAVVVSLLLAILALIGSFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0182033_101186271	3300016319	Soil	MKIGIHAPSKPALVVSLLLAILALIGYYVDSSFAFVIAMFAYIVGALGVLVEI
Ga0182035_100871063	3300016341	Soil	DKKVALDSDVKIGIHTPSKPVLVVSLLFAILALVGYFVDSNFAFLMAMFAYIVVALGVLLEI
Ga0182035_110754121	3300016341	Soil	MKIGIHAPSKPALVISVLLVTLALIASFVDSSFAFFIATFAYIVGALGVLLEI
Ga0182035_117552772	3300016341	Soil	VVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0182032_100455742	3300016357	Soil	VKVGIHSPNKPPVVVSLLLATLALIGYYVDSSFAFFVAMFAYIVGALGVLVEI
Ga0182034_102636332	3300016371	Soil	MKIGIHAPNRPPVIVSLLLAILALIGYFVDAPAAFWIAIFAYIVGALAVLVET
Ga0182034_105699173	3300016371	Soil	SKPALLVSLLLAILALTGYFVDSSFAFFIAMVAYIVGGLGVLLKI
Ga0182034_109902201	3300016371	Soil	MKAPNNPLVVVSSLLAILALFGYFVNTPAAFWIAVAAYIVGALGVLVEIRGKQT
Ga0182034_114120091	3300016371	Soil	PNNPLVVVSSLLAILALFGYFVNTPAAFWIAMAAYIVGALGVLMEIRGKQT
Ga0182037_103925581	3300016404	Soil	LDSDVKIGIHTPSKPVLVVSLLFAILAVVGYFVDSSFAFLMAMFAYIVVALGVLLEI
Ga0182039_115217622	3300016422	Soil	MKIGLHAPSKPALVVSLPLAILALIGYFVDSSFAFFIATFAYIVGAFGVLLKM
Ga0182038_115914491	3300016445	Soil	GVHAPSKPAIVVSLLLAILAPIGYFVDSSFAFLIAMFAYIVGALGVLIKV
Ga0182038_117523863	3300016445	Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFIVAMFAYIVGALGVLVEI
Ga0187777_102424261	3300017974	Tropical Peatland	SGAQTMKIGIHAPSKPAVVVSLLLAILALIGYFVHTPAACWIALAAYIVGALGVLVEI
Ga0187777_106322422	3300017974	Tropical Peatland	MKIAFHAPDKPPVVVSLLLAILVLIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0187766_111489562	3300018058	Tropical Peatland	MKIGIHAPSKPAVVVSLLLAILALIGYFVHSSFAFWIALAAYIVGALGVLVEI
Ga0187766_113561201	3300018058	Tropical Peatland	SCKVWAPIMKIGFHAPDKPPVVVSLLLAILALIGYFVDSSFAFLIAVFAYIVGALGILVE
Ga0207725_1023771	3300026692	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVNSSFAFLIAMFAYLVGAL
Ga0207778_1019061	3300026783	Tropical Forest Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFVIAMFAYIVGALGVLVEI
Ga0207742_1006363	3300026800	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYIIGALGVLVEI
Ga0207742_1052522	3300026800	Tropical Forest Soil	MKIGIHAPDKPPVILSLLLAILAVAGYFVNAPAAFWIAMFAYIVGAAGVLVQI
Ga0207742_1147642	3300026800	Tropical Forest Soil	MKIGIHAPDKPPVVVSLLLAILALIGYYVDSSFAFLIAMFAYIVGALGVLVEI
Ga0207737_1110921	3300026804	Tropical Forest Soil	VKVGIHSPNKPPVVVSLLLAILALIGYSVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207801_1058602	3300026810	Tropical Forest Soil	VVVSLLLAILALIGYFVDSSFAFLIAMFAYLVGALSVLVEI
Ga0207801_1069022	3300026810	Tropical Forest Soil	TKDNLEAPAMKIGIHAPDKPPVILSLLLAILAVAGYFVNAPAAFWIAMFAYIVGAAGVLVQI
Ga0207775_1009384	3300026817	Tropical Forest Soil	MKIEIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYLVGALSVLVEI
Ga0207738_1034704	3300026831	Tropical Forest Soil	VKVGIHSPNKPPVVVSLLLAILALIGYSVDSSFAFFVAMFAYIVGALGVLVEI
Ga0207738_1116902	3300026831	Tropical Forest Soil	MKIGIHAPNKPPVAVSLLLAILALIGYFVNTQAAFWIAMFAYIVGALGVLVEI
Ga0207728_1006312	3300026833	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFSIAMFAYLVGALGVLVEI
Ga0207728_1026081	3300026833	Tropical Forest Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFLIAMFAYI
Ga0207764_1164192	3300026839	Tropical Forest Soil	MKIGIHAPSKPAVIVSLLLAILALIGYFLDTPAAFWIAMFAYIVGALAVLVET
Ga0207802_10002995	3300026847	Tropical Forest Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFFVAMFAYIVGALGVLVEI
Ga0207802_10008212	3300026847	Tropical Forest Soil	LNLNLEARFLNVAKCSPRTRIMKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYIIGALGVLVEI
Ga0207802_10061692	3300026847	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLV
Ga0207729_1004982	3300026858	Tropical Forest Soil	MKIGIHAPDKPPVVVSLLLAILALIAYFVNTPAAFWIAMFAYIVGAVGVITEI
Ga0207823_1024131	3300026860	Tropical Forest Soil	RVPTVKVGIHSPNKPPVVVSLLLAILALIGYSVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207724_10003628	3300026862	Tropical Forest Soil	VKVEIHSPNKPPVVVSLLLAILALIGYSVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207746_10013992	3300026865	Tropical Forest Soil	MKIGIHAPDQPPVVVSLLLAILALTGYFVNVRAAFWIVMFAYIVGALGVLVEI
Ga0207785_10232982	3300026872	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYLVGALSVLVEI
Ga0207763_10264731	3300026879	Tropical Forest Soil	MKIGIHAPDKPPVILSLLLAILAVAGYFVNAPAAFWIAMFAYIVGAAGVLVEI
Ga0207739_10046192	3300026881	Tropical Forest Soil	KPPVVVSLLLAILALIAYFVNTPAAFWIAMFAYIVGAVGVITEI
Ga0207805_10259242	3300026887	Tropical Forest Soil	PSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYLVGALSVLVEI
Ga0207781_10168072	3300026890	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFSIAMFAYLVGALSVLVEI
Ga0207788_10001086	3300026898	Tropical Forest Soil	MKIGIHAPDKPPVIVSLLLAILAVAGYFVNAPAAFWIAMFAYIVGAAGVLVQI
Ga0207788_10074361	3300026898	Tropical Forest Soil	MKIEIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYLVGAL
Ga0207787_10062883	3300026908	Tropical Forest Soil	IMKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207744_10065881	3300026927	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFSIAMFAYIVGALGVLVEI
Ga0207836_10127832	3300026932	Tropical Forest Soil	MKIGIHAPDKPPVVVSLLLAILALIGYFVDSSFAFLIAMFAYIVGALGVLVEI
Ga0207783_10009482	3300026942	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYLVGALSVLVEI
Ga0207783_10085021	3300026942	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVNSSFSFLIAMFAYLVGALSVLVEI
Ga0207783_10121641	3300026942	Tropical Forest Soil	VSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207722_10059314	3300027003	Tropical Forest Soil	MKIGIHAPDKPPVILSLLLAILAVAGYFVNAPAAFWIAMFAYIVGALGVLVEI
Ga0207740_10346191	3300027011	Tropical Forest Soil	PNKPPVVVSLLLAILALIGYYVDSSFAFVIAMFAYIVGALGVLVEI
Ga0207776_10176351	3300027035	Tropical Forest Soil	LNLEARFLNVAKCSPRTRIMKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYIIGALGVLVEI
Ga0207776_10467121	3300027035	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVNSSFAFLIAMFAYLVGALSVLVEM
Ga0207800_10519541	3300027043	Tropical Forest Soil	MKIGIHAPNRPPVIVSLLLAILALIGYFVDTPAAFWIAMFAYIVGALA
Ga0207726_10029611	3300027045	Tropical Forest Soil	GALNSEGSLETRIMKIGIHPPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207762_10460182	3300027063	Tropical Forest Soil	MKIGIHAPDKPPVVVSLLLAILALIGYFVNTPAAFWIALAAYIVGALGVLVGT
Ga0207780_10097941	3300027313	Tropical Forest Soil	GIHAPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0207780_10220051	3300027313	Tropical Forest Soil	MKIGIHAPNKPPVAVSLLLAILALIGYFVNTQAAFWIAMFAYIVGAVGVI
Ga0207780_10617691	3300027313	Tropical Forest Soil	SAGSLGTMKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYLVGALSVLVEI
Ga0207777_10617292	3300027330	Tropical Forest Soil	MKIGIHAPSKPAVVVSLVLTILALIGYFVDSSFAFSIAMFAYIVGALGVLVEI
Ga0207761_10052846	3300027516	Tropical Forest Soil	IGIHAPNRPPVIVSLLLAILALIGYFVDTPAAFWIAMFAYIVGALAVLVET
Ga0207761_10105911	3300027516	Tropical Forest Soil	MKIGIHAPSKPAVVVSLLLAILALIGYSVDSSFAFLIAMFAYLVGALSVQEPSISRV
Ga0207761_11103681	3300027516	Tropical Forest Soil	MKIGFHAPSKPPVVVSLLLAILALIGYYVDSSFAFLIAMFAYIVGALGVLVEI
Ga0207826_12166721	3300027680	Tropical Forest Soil	MKIGIHAPSKPTLVISVLLATLALIASFVDNAFAFFIATFAYIVGALGVLVGI
Ga0207862_10143433	3300027703	Tropical Forest Soil	MHRVHPPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGVLGVLVEI
Ga0207862_10611561	3300027703	Tropical Forest Soil	KPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYLVGALSVLVEI
Ga0207862_10905192	3300027703	Tropical Forest Soil	KIGIHAPSKPAAVVSLLLALLALIGYFVDSSFAFLIAMFAYIVGALGVLVEI
Ga0207862_12304921	3300027703	Tropical Forest Soil	MKIGIHAPDQPPVVVSLLLAILALTGYFVNVRAAFWIAMFAYIVGALGVLVEI
(restricted) Ga0255311_11313841	3300031150	Sandy Soil	MEIGIHEPNKLAVIVSLLLAILAIIAQFVASPVAFWIAIFAYVVGALGVLVKT
Ga0318541_104358192	3300031545	Soil	LDSDVKIGIHTPSKPVLVLSLLFAILAVVGYFVDSSFAFLMAMFAYIVVAIGVLLEI
Ga0318538_107011911	3300031546	Soil	LDSDVKIGIHTPSKPVLVVSLLFAILAVVGYFVDSSFAFLMAMFAYIVVAIGVLLEI
Ga0318501_107210271	3300031736	Soil	MKIGIHAPSKPAVVVSLLLAILALIGYFVDSSFAFLIAMFAYIVGALGVLVEV
Ga0306918_107309191	3300031744	Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFFVAMFAYIVG
Ga0318509_108614911	3300031768	Soil	LDSDVKIGIHTPSKPVLVLSLLFAILAVVGYFVDSSFAFLMAMFAYIVVALGVLLEI
Ga0306925_104303321	3300031890	Soil	MKIGIHAPSKPALVVSLLLALLALTGYYVDSSFAFFIAMVAYIVGGLGVLLKI
Ga0306925_107367621	3300031890	Soil	MKIGIHAPNRPPVIVSLLLAILALIGYFVDTPAAFWIAIFAYIVGALAVLVET
Ga0318520_108954672	3300031897	Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVVDSSFAFFIAMFAYFVGALGILVEI
Ga0306923_102500591	3300031910	Soil	MKIGIHAPSKPALVVSLLLAILALMGNFVDSSFAFFIAMFAYIVGALGVLV
Ga0306923_122696602	3300031910	Soil	LETRTVKIGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFFIAMFAYFVGALGILVKL
Ga0306923_124349901	3300031910	Soil	MKIGIHAPSKPALLVSLLLAILALTGYFVDSSFAFFIAMVAYIVGGLGVLLKI
Ga0306923_124395931	3300031910	Soil	LDSDVKIGIHTPSKPVLVLSLLFAIIAVVGYFVDSSFAFLMAMFAYIVVAIGVLLEI
Ga0306921_121719172	3300031912	Soil	MKIGIHAPSKPALVVSLLLAILALMGNFVDSSFAFFIAMFAYIVGALGVLVGI
Ga0310912_114847513	3300031941	Soil	MKIGIHAPSKPALVVSLLLAILALTGYYVDSSFAFFIAMVAYIVGGLGVLLKI
Ga0310916_100511636	3300031942	Soil	VKVGIHSPNKPPVVVSLLLAILALIGYFVDSSFAFFIAMFAYFVGA
Ga0310916_113193972	3300031942	Soil	MKIGIHAPDKPAVVVSLLLAILALTGYFVDSSFAFFITLAAYIVGALGVLVEI
Ga0310916_114202251	3300031942	Soil	IHAPSKPALVVSSLLAILAPIGYFVDSSFAFFIAMFAYIVGALGVLVGI
Ga0310916_116061792	3300031942	Soil	MKIGLHAPSKPALVVSLPLAILALIGYFVDSSFAFFIATFAYIVGAFGVLLK
Ga0310910_103942151	3300031946	Soil	FGSWTMKIGIHAPSKPALVVSLLLAILALMGNFVDSSFAFFIAMFAYIVGALGVLVGI
Ga0318533_114288872	3300032059	Soil	LDSDVKIGIHKPSKPVLVVSLLFAILAVVGYFVDSSFAFLTAMFAYIVVALGVLLEI
Ga0306924_116915981	3300032076	Soil	MKIGIHAPNRPPVIVSLLLAILALIGYFVDTPAAFWIAIFAYIVGALAVL
Ga0306920_1003971873	3300032261	Soil	MKIGTNAPSKPAVVVSLLLAILALIGYFVDSSFAFFIAMFAYIVGALGVLVEI
Ga0306920_1008709271	3300032261	Soil	KIGIHAPNRPPVIVSLLLAILALIGYFVDTPAAFWIAMFAYIVGALAVLVET
Ga0306920_1011055223	3300032261	Soil	VKVGIHSPNKPPVVVSLLLAILALIGYYVDSSFAFFVAMFAYIVGALGV
Ga0306920_1011244651	3300032261	Soil	SPNKPPVVVSLLLAILALIGYYVDSSFAFFVAMFAYIVGALGVLVEI
Ga0306920_1027587782	3300032261	Soil	TMKIGINASSKPALVVSVLLAILALIGYFVDSSFAFFIAMFAYVVGALGVLVEI
Ga0310914_103716754	3300033289	Soil	IMKIGIHAPDKPAVVVSLLLAILALTGYFVDSSFAFFITLAAYIVGALGVLVEI
Ga0310914_105426861	3300033289	Soil	MEPDSVIWTMKIGIHAPSKPALVVSLLLAILALTGYYVDSSFAFFIAMVAYIVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters