NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F069374

Metagenome / Metatranscriptome Family F069374

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F069374
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 56 residues
Representative Sequence MKKLRFLVSLTTRENDYQLEQAAAAQEASRRLGVDLEILYADNDAITQSTQILK
Number of Associated Samples 104
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 2.42 %
% of genes from short scaffolds (< 2000 bps) 2.42 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (97.581 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(21.774 % of family members)
Environment Ontology (ENVO) Unclassified
(33.065 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.677 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.49%    β-sheet: 14.63%    Coil/Unstructured: 54.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF03551PadR 16.13
PF12704MacB_PCD 4.03
PF13407Peripla_BP_4 3.23
PF04685DUF608 2.42
PF02550AcetylCoA_hydro 1.61
PF13650Asp_protease_2 1.61
PF07969Amidohydro_3 1.61
PF00092VWA 1.61
PF00294PfkB 1.61
PF13434Lys_Orn_oxgnase 0.81
PF02518HATPase_c 0.81
PF13520AA_permease_2 0.81
PF07702UTRA 0.81
PF00691OmpA 0.81
PF02782FGGY_C 0.81
PF13517FG-GAP_3 0.81
PF00557Peptidase_M24 0.81
PF13620CarboxypepD_reg 0.81
PF16363GDP_Man_Dehyd 0.81
PF02633Creatininase 0.81
PF13435Cytochrome_C554 0.81
PF00696AA_kinase 0.81
PF00155Aminotran_1_2 0.81
PF13336AcetylCoA_hyd_C 0.81
PF13474SnoaL_3 0.81
PF13432TPR_16 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 16.13
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 16.13
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 16.13
COG4354Uncharacterized conserved protein, contains GBA2_N and DUF608 domainsFunction unknown [S] 2.42
COG0427Propionyl CoA:succinate CoA transferaseEnergy production and conversion [C] 1.61
COG1402Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)Coenzyme transport and metabolism [H] 0.81


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A97.58 %
All OrganismsrootAll Organisms2.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300007258|Ga0099793_10673848All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300012361|Ga0137360_10186072All Organisms → cellular organisms → Bacteria → Acidobacteria1672Open in IMG/M
3300021171|Ga0210405_11278058All Organisms → cellular organisms → Bacteria540Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil21.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil15.32%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil8.87%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.26%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil7.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.03%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.23%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.42%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.42%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.42%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.61%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.61%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.61%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.61%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.81%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.81%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.81%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300024219Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06EnvironmentalOpen in IMG/M
3300024271Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5EnvironmentalOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026316Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)EnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026810Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 16 (SPAdes)EnvironmentalOpen in IMG/M
3300026983Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 (SPAdes)EnvironmentalOpen in IMG/M
3300027109Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)EnvironmentalOpen in IMG/M
3300027381Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027610Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027652Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027663Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027701Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027795Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030844Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A1DRAFT_1007624523300000597Forest SoilMAKIKFLVSLTTNDNDYQLEQAYAAEQAARNFGADLQILYADNDAINQSTQILKAIQAAPDERPHGIIF
JGIcombinedJ26739_10057424713300002245Forest SoilMKRLRLLVSLMTRENDYQLEQAASAQQAAAGLGCDLQVIFADNDAITQGTQLLKIIQA
JGI25617J43924_1008265113300002914Grasslands SoilMSKLRFVVSLSTKDNDYQLEQAASAQAAARKLGVDVQILYADNDAIIQSTQLL
JGIcombinedJ51221_1040597713300003505Forest SoilMKKLRFLVSLTTRENDYQLEQAAAAQEASRKLGVELEILYADNDAITQSTQILKAVQAAPELRP
Ga0062385_1015254733300004080Bog Forest SoilMQMKKLRLLVSLMTRENDYQLEQAASAQQAGVSLGCDVQV
Ga0062384_10133472713300004082Bog Forest SoilMKKLRLLVSLMTRENDYQLEQAASAQQAGVSLGCDVQVIFADNDAITQGT
Ga0062389_10205801613300004092Bog Forest SoilMSKLRFLVSLTTNDNDYQMEQAESAENAARRLNVELQISYADNDAINQSTQILKAIQSASPVR
Ga0062389_10215502123300004092Bog Forest SoilMKKLRFLVSLMTRENDYQLEQAASAQQAAASQGVEVQIVFADNDAITQGTQVLKIIQGGAAM
Ga0062389_10311773723300004092Bog Forest SoilMKRLRLLVSLMTRENDYQLEQAASAQQAGMSLGCDAQVVFADNDAITQGTQ
Ga0062389_10411494613300004092Bog Forest SoilMGKFRFLVSLTTNDNDFQLEQAQAAEQAASKFGVSVQTLFAQNDAINQSTQILKAIQ
Ga0062389_10489119013300004092Bog Forest SoilMKKLRLLVSLMTRENDYQLEQAASAQQAGVSLGCDVQVIFADN
Ga0062386_10048010013300004152Bog Forest SoilMGKLKFLVSLMTDENDYQLEQANSATQAAAKLGVDIQILYADND
Ga0063455_10160453613300004153SoilVKRLRFVISLMTKHNDYQLEQAVSVQQASHKLGVDVQILYADNDPITQS
Ga0062388_10140893723300004635Bog Forest SoilMTKLRYLVSLITKDNDYQMEQAASARASAAELGVDVEIVYAENDAITQSTQLLKVIQADPTLRP
Ga0070710_1088804823300005437Corn, Switchgrass And Miscanthus RhizosphereMKKLRFVVSLITRENDYQLEQAASAQQAAALHGVDLQILFAENDAITQGTQVLK
Ga0070701_1087530123300005438Corn, Switchgrass And Miscanthus RhizosphereMKKLRFVVSLMTRENDYQLEQAAAAQQAAAMHGIDLQILFAENDAITQ
Ga0070704_10006899413300005549Corn, Switchgrass And Miscanthus RhizosphereMKKLRFLVSLTTDDNDYQAEQSESAEQAARKTGVEVQIIHAQNDAITQSTQILKAVQAPKDL
Ga0066699_1032853713300005561SoilMKKLRFVVSLMTRENDYQLEQAAAAQQAATLHGIDLQILFAEN
Ga0066703_1047094923300005568SoilMKKLRFVVSLTTRENDYQLEQAAAAQEASRRLGADLEILYADNDAITQSTQILKAVQAAPELRPDAIVFEP
Ga0070763_1065297413300005610SoilMKKLRLLVSLMTRENDYQLEQAASAQQAGASLGCDVQVIFADNDAITQGT
Ga0075028_10001780613300006050WatershedsMGKFRFLVSLTTNDNDFQLEQAQAAEQAASRFGVSIQTLFAQNDAITQSTQILKAIQAAPEE
Ga0075030_10123963913300006162WatershedsMKKLRFLVSLTTKDNDYQLEQARSAEQAAQKLDIQTEILYAENDAITQSTQLLK
Ga0070715_1073744413300006163Corn, Switchgrass And Miscanthus RhizosphereMKKLRFVVSLMTRENDYQLEQAASAQQAATLHGIDLQILFAENDAITQGTQVLKIIQGTETER
Ga0075018_1019170313300006172WatershedsMKKLRFVLSLMTRENDYQLEQAAAATQAAASHGMELQILFAENDAITQGTQLLKIIQT
Ga0070765_10018968323300006176SoilMNRLRFLLSLITKENDYQMEQAAAAKSTAQELGLDLDILYAENDAITQSTQLLKVIQGNPSVRPAAI
Ga0070765_10129530013300006176SoilMKKLRFLVSLMTKNNDYQLEQAAAAQQSAAQLDVDAQILFADNDPIT
Ga0070765_10134097123300006176SoilMKRIRVVVSLMTRENDYQLEQAASAQESAASLGVDAQII
Ga0068871_10100076723300006358Miscanthus RhizosphereMPKMKILVSLITNNNDYQLEQAQDAERAARKFDLDTQIIFADNDAVNQSTQILKAVQVPA
Ga0075521_1020207123300006642Arctic Peat SoilMPRLKFLVSLTTNDNDYQAEQAASAEQAARKFGVEVEILYADNDAINQSTQILKAIQAAEEDRPSGIVFEPVGGT
Ga0099793_1067384823300007258Vadose Zone SoilMKKLRFLVSLTTDDNDYQTEQAKSAEQMARKLGADVQIVYADNDAITQSTQILKAIQ
Ga0099795_1015420433300007788Vadose Zone SoilMANLRFIVSLITKENDYQLEQAADAQAAAKKLGVDVQILYADNDAITQS
Ga0099829_1033504633300009038Vadose Zone SoilMANLRFIVSLITKDNDYQLEQAAAAQAAAQKVGVDAQILYADNDAITQSTQLL
Ga0099830_1025434533300009088Vadose Zone SoilMANLRFIVSLITKENDYQLEQAADAQAAAKKLGVDVQILYA
Ga0099828_1133643013300009089Vadose Zone SoilMANLRFVVSLITKENDYQLEQAVSAQTAAHKLGIDLQVLYADGDAITQSTQLLKVIQGEAA*
Ga0099792_1012604223300009143Vadose Zone SoilMKKLRFLISLTTGDNDYQTEQAQSAEQAARNLGVEAQILYANNDAITQSTQILKAVQAAENLRP
Ga0116135_102261313300009665PeatlandMKKLRLLVSLMTRENDYQLEQAASAQQAGPSLGCDVQVIF
Ga0126370_1107808313300010358Tropical Forest SoilMSKLRFLVALITQENDYQTEQAAAARAAAKEAGVDAEIIYADNDAIT
Ga0126376_1004199713300010359Tropical Forest SoilMSKLRILVSLTTNDNDYQLEQANAAEQAAQKLGVALQLIYAGNDAINQSTQILKAVQAPEEDDRPHAIVF
Ga0126376_1253402323300010359Tropical Forest SoilMAKLRILVSLTTNENDFQIEQAQSAEEAAKRLGVTAEIIYADNDAINQSTQLLKAVQAAA
Ga0126378_1300935523300010361Tropical Forest SoilMKKLRFLVSLTTNDNDYQMEQAQSAEEAARKFGVELQVIYADNDAITQSTQLLKTIQAEASHRPDAII
Ga0137393_1031744033300011271Vadose Zone SoilMANLRFVVSLITKENDYQLEQAVSAQTAAHKLGIDLQVLYADGDAITQST
Ga0137388_1011462413300012189Vadose Zone SoilMKKLRFLVSLTTRENDYQLEQAAAAQDASRRLGADLEILYAENDAITQSTQILKAVQAAPELRPDAI
Ga0137399_1003720933300012203Vadose Zone SoilMKKLRFLVSLTTRENDYQLEQAAAAQDASRRLGADLEILYAENDAITQSTQILKAVQAAPEL
Ga0137399_1109395823300012203Vadose Zone SoilMKKLRFLVSLTTRENDYQLEQAAAAQDASRRLGADLEILYAENDAITQSTQILKAVQA
Ga0137399_1116820513300012203Vadose Zone SoilMTKLRIVVSLTTKDNDYQLEQAKSAEEIAHRLDVDIQILYAENDAINQSTQLLRVIQSTPQDRPSAIV
Ga0137362_1003972853300012205Vadose Zone SoilMKKLRFLVSLTTRENDYQLEQAVAAQDASRRLGADLEILYAENDAITQST
Ga0137360_1014344933300012361Vadose Zone SoilMANLRFIISLITKDNDYQLEQAAAAQAAAQKVCVNAQILYADDDAITKSTQL
Ga0137360_1018607213300012361Vadose Zone SoilMANLRFIVSLITKENDYQLEQAADAQSAAKKLGVDVQILYADNDAITQSTQLLKA
Ga0137360_1096035013300012361Vadose Zone SoilMANVRFIVSLITKENDYQLEQAADAQSAAKKLGVDVQILYA
Ga0137390_1161882813300012363Vadose Zone SoilMANLRFIVSLTTKDNDYQLEQAASAQAAALKVGVDAQILYADSDAITQSTQLL
Ga0137397_1096232123300012685Vadose Zone SoilMKKLRFLVSLTTRENDYQLEQAAAAQDASRRLGAD
Ga0137419_1072233713300012925Vadose Zone SoilMKKLRFLVSLTTNDNDYQTEQAESAEQMARKLGVDVQIVYADNDAINQSTQILKEIQSP
Ga0137416_1099018113300012927Vadose Zone SoilMKKLRFLVSLTTNDNDYQTEQAESAEQMARKLGVDVQIVYADNDAINQSTQILKEIQSPAESRPSGIIF
Ga0137404_1050309113300012929Vadose Zone SoilMKKLRFVVSLMTRENDYQLEQAAAAQQAATMHGIDLQILFAENDAITQGTQV
Ga0164303_1150048513300012957SoilMANLRFIVSLITKENDYQLEQGADAQATAQKLGVDVQIVYADNDAITQSTQLLKSIQCD
Ga0164302_1185054113300012961SoilMKKLRFVVSLRTRENDYQLEQAAAAQQAAAMHGIDLQILFAENDAITQGTQGLKIIQGT*
Ga0126369_1033195333300012971Tropical Forest SoilMKKLRFLVSLMTRENDYQLEQAAAATQAAAAHGVDLQILFAE
Ga0181534_1033063113300014168BogVPRLRFICSLVTKENDYQMEQAASARVAAQNLGVDVEIVFADG
Ga0181522_1084743723300014657BogMLLHGPIRGAKMPKLKILVSLTTYDNDYQAEQAISAEQAARKFGVEVQILYAENDAINQSTQILKAIQATEE
Ga0137414_108978323300015051Vadose Zone SoilMANLRFIVSLITKENDYQLEQAADAQAAAKKLGVDVQILYADNDAITQSTQLLKAIQCDAAARPQAIIFEPAG
Ga0137414_114986913300015051Vadose Zone SoilMANLRFIVSLITKENDYQLEQAADAQAAAKKLGVDDVQILYADNDAITQSTQLLKAIQCDAA
Ga0137405_103647333300015053Vadose Zone SoilMKKLRFLVSLTTRENDYQLEQAAAAQDASRRLGADLEIL
Ga0182038_1202020813300016445SoilMAKTKFLVSLTTNDNDYQLEQAYAAEQAARNFGADLQILYADNDAINQSTQILKAIQAAPDE
Ga0187802_1008801023300017822Freshwater SedimentVAKLRILVSLITEDNDYQREQAASAQSAATQLGVDLDILYAGNDAITQS
Ga0187817_1004232133300017955Freshwater SedimentMKKLRFLVSLMTRENDYQLEQASPAQQAAASHGVEVQI
Ga0187772_1040582823300018085Tropical PeatlandMKKLKFLVSLTTNDNDYQLEQARAAEQTAKKLNVELRILYAGNDAINQSTQILKAVQAAAEDR
Ga0187772_1143330913300018085Tropical PeatlandMNTLRVLVALMTNDNDYQLEQANSATQAASKLGVEAKIVFADNDAINQSTQILKAIQAVPEERPDAIIFEP
Ga0179594_1001966913300020170Vadose Zone SoilMKKLRLLVSLMTRENDYQLEQAASAQQAGVSLGCDVQVVFADNDAITQGTQLLKIIQA
Ga0210399_1090643023300020581SoilMKKLRFLISLTTNDNDYQQEQADSAEQMARKLGVELQIVYAENDAITQSTQILK
Ga0210401_1151763413300020583SoilMGKFRFLVSLTTNDNDFQLEQAQAAEQAASKFGVSVQTLFAQNDAINQSTQILKAIQA
Ga0210406_1031594713300021168SoilMANLKFLLSLTTSENDYQLEQANAATLSAKNLGVELQTVYAENDAINQSTQILKAIQVAPEDRPNAIVFEPVGG
Ga0210406_1048751723300021168SoilMKKLRFLVSLMTKNNDYQLEQAAAAQQAAAQLDVDAQILFADNDPITQSTQVLKA
Ga0210405_1127805813300021171SoilMKKLRFLVSLTTKENDYQLEQAASAQEASRRLGVDLEILYADNDAITQSTQILKVLQTDPQLRPDAIVFE
Ga0210408_1142198713300021178SoilMKKLRFLVSLTTKENDYQLEQAASAQEASRRLGVDLEILYADNDAI
Ga0210408_1145082813300021178SoilMKKLRFLVSLTTKENDYQLEQAASAREASRRLAVDLEILYADNDPITQSTQILKALQS
Ga0210396_1007820813300021180SoilMKKLRLLVSLMTRENDYQLEQAASAQQAGVSLGCDVQVIFADNDAITQ
Ga0210388_1114541113300021181SoilMKKLRLLVSLMTRENDYQLEQAASAQQAGVSLGCDVQVIFADNDAITQGTQLLKIIQGEPVTRP
Ga0210397_1003580443300021403SoilMKKLRFLVSLTTKENDYQLEQAASAQEASRRLGFDLEILYAD
Ga0210397_1025185313300021403SoilMKKIRLLVSLMTRENDYQLEQAASAQEAAASLGIDAQIIFADNDAITQGTQLL
Ga0210387_1044853913300021405SoilMKKLRFLVSLMTKGNDFQMEQSASAESAARQLGVDVEIVFADNDAITQSTQVLKAIQVAPEIRPDAIIVEPV
Ga0210383_1044462713300021407SoilMNRLRFLLSLITMENDYQMEQAAAAKSTAQELDLDLDILYADNDAITQSTQL
Ga0210392_1025429013300021475SoilMANLKFLLSLTTSENDYQLEQANAATLSAKNLGVELQTVYAENDAINQSTQILKAIQVAPEDRPNAIVFE
Ga0212123_1089504513300022557Iron-Sulfur Acid SpringMKKVRLLVSLMTRENDYQLEQAASAQQAGASLGCDVEVV
Ga0247665_101711723300024219SoilMKKLRFLVSLTTDDNDYQAEQSESAEQAARKTGVEVQILHAQNDAINQSTQILKA
Ga0224564_104946133300024271SoilMKKLRFLVSLTTRENDYQLEQAAAAQEASRRLAVDLELLYADNDAITQSTQVLKALQTAP
Ga0207675_10068571223300026118Switchgrass RhizosphereMKKLRFVVSLMTRENDYQLEQAAAAQQAAAMHGIDLQILFAENDAITQGTQVLKIIQGTEAQR
Ga0209890_1020817913300026291SoilMKKLRLLVSLMTRENDYQLEQAASAQLAGASLGCDIQVIFADNDAITQ
Ga0209240_113841813300026304Grasslands SoilMANLRFIVSLITKENDYQLEQAADAQAAAKKLGVDVQILYADN
Ga0209155_112173033300026316SoilMAKIRILISLTTKDNDYQMEQAQSAEQAAAKLGVTAEIVYAENDAINQSTQLLKAVQAPP
Ga0257158_111383523300026515SoilMKKLRFLVALMTKNNDYQLEQAAAAQQAAGQLSIDMQVVFGENDPIT
Ga0209648_1074307113300026551Grasslands SoilMAKLRFVVSLITKENDYQMEQAASANAAANELGVEVEIVYADNDAITQSTQLLKVIQGEPSLRPQGII
Ga0207801_10980713300026810Tropical Forest SoilMRKLNILVSLMTNENDYQLEQANSAEEAGNKLGVGCKILFAGNDAITQSTQILKAIQAPEEER
Ga0207856_103883523300026983Tropical Forest SoilMRKLKFLVSLMTNENDYQLEQASSAEQAAHRLGVDVHILFADNDAITQSTQI
Ga0208603_105086713300027109Forest SoilMKKLRLLVSLMTRENDYQLEQAASAQQAGASLGCDVQVIFAD
Ga0208603_106825013300027109Forest SoilMKKLRFLVSLTTRENDYQLEQAAAAQEASRKLGVELEILYADNDAITQSTQILKAVQAA
Ga0208983_107104723300027381Forest SoilMANLRFIVSLITRENDYQLEQAADAQAAAKKLGVDVQILYADNDAITQSTQLLKAIQCDAAARPQA
Ga0209528_111354013300027610Forest SoilMKRLRLLVSLMTRENDYQLEQAASAQQAAAGLGCDLQVIFADNDAITQGTQ
Ga0209007_119166613300027652Forest SoilMKKLRLLVSLMTRENDYQMEQAASAQQAGPSLGCDVQVIFADNDAITQGTQLLKIIQADPAT
Ga0208990_105644933300027663Forest SoilMKKLRFLVSLTTRENDYQLEQAAAAQEASRRLGVDLEILYADNDAITQSTQILK
Ga0207826_120017713300027680Tropical Forest SoilMPKMKFLVSLTTNDNDYQAEQAASAEQAARKFGVDVEIRYADNDAINQSTQILNAIQSSTQE
Ga0209447_1013665613300027701Bog Forest SoilMSKLRFLVSLTTNDNDYQMEQAESAENAARRLNVELQISYADNDAINQSTQILKAI
Ga0209139_1010378033300027795Bog Forest SoilMGKLRFLVSLTTNDNDFQLEQAQAAEQAASKFGVSLQTLFAQNDAINQSTQILKAIQAAPEERP
Ga0209693_1017575213300027855SoilMKKLRFLVSLTTRENDYQLEQAAAAQEASRKLGVELEILYADNDAITQSTQIL
Ga0209693_1046674613300027855SoilMKKLKFLVSLTTDDNDYQAEQSESAETSARKTGVDVQIIYAQNDAINQSTQILKAVQAAKELRPDAIIFEP
Ga0209169_1018136713300027879SoilMKKIRLLVSLMTRENDYQLEQAASAQEAAASLGIDAQIIFADNDSITQGT
Ga0209380_1059464213300027889SoilMKKLRLLVSLMTRENDYQLEQAASAQQAAAGLGCDLQVIFAD
Ga0209068_1038664123300027894WatershedsMKKLRFVLSLMTRENDYQLEQAAAATQAAASHGMELQILFAENDAITQGTQLLKII
Ga0209488_1075154613300027903Vadose Zone SoilMANLRFIVSLITKENDYQLEQAADAQAAAKKLGVDVQILYADND
Ga0209488_1091163823300027903Vadose Zone SoilMANLRFVVSLITKENDYQLEQAVSAQTAAHKLGIDLQVLYADGDAITQSTQLLKVIQG
Ga0209526_1054774333300028047Forest SoilMKRLRLLVSLMTRENDYQLEQASSAQQAGTSLGCDSQVVFADNDAITQGTQLLKIIQADPATRP
Ga0137415_1048017423300028536Vadose Zone SoilMKKLRFVVSLTTNDNDYQTEQAESAEQMARKLGVDVQIVYADNDAINQSTQILKEIQSPAESRPSGIIF
Ga0308309_1045399213300028906SoilMKKLRLLVSLMTRENDYQLEQAASAQQAAAGLGCDLQVIFADNDAIT
Ga0075377_1125802513300030844SoilMKKIRVVVSLMTRENDYQLEQAASAQESATSLGIEAQIIFSDNDAITQGTQLLKIIQADPTTRPDAILC
Ga0307476_1013975313300031715Hardwood Forest SoilMAKLRFVVSLITKENDYQMEQAASANAAANELGVEVEIVYADNDAITQSTQLLK
Ga0318547_1014585113300031781SoilMAKIKFLVSLTTNDNDYQLEQAYAAEQAARNFGADLQILYADNDAINQSTQILK
Ga0307478_1020065123300031823Hardwood Forest SoilMAKLRFVVSLITKENDYQMEQAASANAAANELGVEVEIVYADNDAIT
Ga0306919_1129690223300031879SoilMAKIKFLVSLTTNDNDYQLEQAYAAEQAARNFGADLQILYADNDAINQSTQILKAIQAATDERPDGIIFEP
Ga0306925_10004166133300031890SoilMAKIKFLVSLTTNDNDYQLEQAYAAEQAARNFGADLQILYADNDAINQSTQILKAIQAA
Ga0306924_1201089613300032076SoilMRKLRILVSLTTNDNDYQLEQARAAETASKKCNAELQILYADNDAINQSTQILK
Ga0307472_10059599423300032205Hardwood Forest SoilMKKLRFVLSLMTRENDYQLEQAAAAQQAAAMHGIDLQILFAENDAIT
Ga0306920_10364646923300032261SoilMPKMKILVSLITNNNDYQLEQAQDAERAARKFDLDAQIIFADNDAVNQSTQILKAVQVP
Ga0306920_10420885013300032261SoilMAKTRILVSLTTNDNDYQLEQAQSADEAAKRLRVTAEIIFADNDAINQSTQLLKAVQ
Ga0335078_1269791213300032805SoilVAKLRILVSLITEDNDYQREQAASAKSTAGQLGVDLEILYAGNDAITQSTQLLKAIQAAP
Ga0310914_1000243613300033289SoilMAKIKFLVSLTTNDNDYQLEQAYAAEQAARNFGADLQILYADNDAINQSTQILKAIQAAPDERP


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