Metagenome / Metatranscriptome Family F069146

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069146
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	127 residues
Representative Sequence	LIGIGRRAGTAFRPLNATAYAVIGTRADGVWGFGHVTIIGVLVVLALSAVAGILVARLSPSQRTLRDLVAAAGVALAGYFVHAHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF
Number of Associated Samples	109
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.77 %
% of genes near scaffold ends (potentially truncated)	53.23 %
% of genes from short scaffolds (< 2000 bps)	54.03 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.161 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (8.871 % of family members)
Environment Ontology (ENVO)	Unclassified (53.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.097 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.46% β-sheet: 0.00% Coil/Unstructured: 33.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00009	GTP_EFTU	10.48
PF13424	TPR_12	2.42
PF14492	EFG_III	1.61
PF13181	TPR_8	1.61
PF08811	DUF1800	0.81
PF08338	DUF1731	0.81
PF02548	Pantoate_transf	0.81
PF07719	TPR_2	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0413	Ketopantoate hydroxymethyltransferase	Coenzyme transport and metabolism [H]	0.81
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	0.81
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.16 %
Unclassified	root	N/A	29.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.16 %
Unclassified	root	N/A	29.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.16 %
Unclassified	root	N/A	29.84 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	64.52 %
Unclassified	root	N/A	29.84 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.61 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	64.52 %
Unclassified	root	N/A	29.84 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.84 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	15.32 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	8.06 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.84 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	15.32 %
Gemmatimonadetes bacterium 21-71-4	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	5.65 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.42 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.84 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	15.32 %
Gemmatimonadetes bacterium 21-71-4	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	5.65 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.42 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.84 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	5.65 %
Gemmatimonadetes bacterium 21-71-4	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	5.65 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.42 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.61 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.81 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.84 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5.65 %
Gemmatimonadetes bacterium 21-71-4	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	5.65 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.42 %
Amycolatopsis japonica group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis japonica group	1.61 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.81 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.84 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5.65 %
Gemmatimonadetes bacterium 21-71-4	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	5.65 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.42 %
Amycolatopsis japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis japonica group → Amycolatopsis japonica	1.61 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.81 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105893466	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	763	Open in IMG/M
3300000955\|JGI1027J12803_108449327	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	4093	Open in IMG/M
3300004156\|Ga0062589_101522269	Not Available	659	Open in IMG/M
3300004157\|Ga0062590_102129126	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	585	Open in IMG/M
3300004157\|Ga0062590_102965892	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	508	Open in IMG/M
3300005093\|Ga0062594_100021751	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2712	Open in IMG/M
3300005290\|Ga0065712_10074865	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3991	Open in IMG/M
3300005328\|Ga0070676_11611261	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	502	Open in IMG/M
3300005333\|Ga0070677_10224360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis japonica group → Amycolatopsis japonica	920	Open in IMG/M
3300005337\|Ga0070682_101027112	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	686	Open in IMG/M
3300005343\|Ga0070687_100192054	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1231	Open in IMG/M
3300005344\|Ga0070661_100102047	All Organisms → cellular organisms → Bacteria	2135	Open in IMG/M
3300005347\|Ga0070668_101696326	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	580	Open in IMG/M
3300005353\|Ga0070669_100621002	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300005354\|Ga0070675_101679526	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	586	Open in IMG/M
3300005355\|Ga0070671_100005095	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	10464	Open in IMG/M
3300005364\|Ga0070673_101206476	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	709	Open in IMG/M
3300005367\|Ga0070667_100131994	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2181	Open in IMG/M
3300005456\|Ga0070678_100202756	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1638	Open in IMG/M
3300005457\|Ga0070662_101662799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis japonica group → Amycolatopsis japonica	551	Open in IMG/M
3300005564\|Ga0070664_100005884	All Organisms → cellular organisms → Bacteria	9902	Open in IMG/M
3300005564\|Ga0070664_100028261	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4665	Open in IMG/M
3300005577\|Ga0068857_100206066	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1794	Open in IMG/M
3300006755\|Ga0079222_10062453	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1791	Open in IMG/M
3300006876\|Ga0079217_10012483	All Organisms → cellular organisms → Bacteria	2780	Open in IMG/M
3300006894\|Ga0079215_10365640	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300009156\|Ga0111538_10199404	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2539	Open in IMG/M
3300009174\|Ga0105241_11397005	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	670	Open in IMG/M
3300009551\|Ga0105238_12309612	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	573	Open in IMG/M
3300009553\|Ga0105249_12170926	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	628	Open in IMG/M
3300010037\|Ga0126304_10899537	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	602	Open in IMG/M
3300010038\|Ga0126315_10535002	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	750	Open in IMG/M
3300010042\|Ga0126314_10522451	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	863	Open in IMG/M
3300010042\|Ga0126314_11112319	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	588	Open in IMG/M
3300010045\|Ga0126311_10131005	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1763	Open in IMG/M
3300010403\|Ga0134123_10685547	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	999	Open in IMG/M
3300012469\|Ga0150984_100483901	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	531	Open in IMG/M
3300012469\|Ga0150984_108331095	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	705	Open in IMG/M
3300012905\|Ga0157296_10149819	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	697	Open in IMG/M
3300012915\|Ga0157302_10441533	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	547	Open in IMG/M
3300012939\|Ga0162650_100018672	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	978	Open in IMG/M
3300012985\|Ga0164308_10505006	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1012	Open in IMG/M
3300013102\|Ga0157371_10333793	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1102	Open in IMG/M
3300013297\|Ga0157378_11631853	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	691	Open in IMG/M
3300014325\|Ga0163163_12112067	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	623	Open in IMG/M
3300014326\|Ga0157380_10644596	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1055	Open in IMG/M
3300014969\|Ga0157376_11319707	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	752	Open in IMG/M
3300015262\|Ga0182007_10197230	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	702	Open in IMG/M
3300015372\|Ga0132256_101106380	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	907	Open in IMG/M
3300018920\|Ga0190273_10607628	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	827	Open in IMG/M
3300021363\|Ga0193699_10383455	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	584	Open in IMG/M
3300021445\|Ga0182009_10323085	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	782	Open in IMG/M
3300022756\|Ga0222622_10616346	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	784	Open in IMG/M
3300025901\|Ga0207688_10023263	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3392	Open in IMG/M
3300025901\|Ga0207688_10299020	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	984	Open in IMG/M
3300025903\|Ga0207680_10541144	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	831	Open in IMG/M
3300025907\|Ga0207645_10027360	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3683	Open in IMG/M
3300025909\|Ga0207705_10243606	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1370	Open in IMG/M
3300025916\|Ga0207663_10055670	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2483	Open in IMG/M
3300025920\|Ga0207649_11156015	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	611	Open in IMG/M
3300025924\|Ga0207694_10931736	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	735	Open in IMG/M
3300025926\|Ga0207659_10095368	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2231	Open in IMG/M
3300025931\|Ga0207644_10047251	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3070	Open in IMG/M
3300025935\|Ga0207709_11836962	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	504	Open in IMG/M
3300025937\|Ga0207669_10621590	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	880	Open in IMG/M
3300025960\|Ga0207651_11016161	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	741	Open in IMG/M
3300026035\|Ga0207703_10450441	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1202	Open in IMG/M
3300026041\|Ga0207639_11897946	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	557	Open in IMG/M
3300026067\|Ga0207678_10521375	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1037	Open in IMG/M
3300026067\|Ga0207678_11209571	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	669	Open in IMG/M
3300026089\|Ga0207648_10469291	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1148	Open in IMG/M
3300027886\|Ga0209486_10379695	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	852	Open in IMG/M
3300027907\|Ga0207428_10274994	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1251	Open in IMG/M
3300028810\|Ga0307294_10348406	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	547	Open in IMG/M
3300030496\|Ga0268240_10003477	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2191	Open in IMG/M
3300031852\|Ga0307410_10301000	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1265	Open in IMG/M
3300031901\|Ga0307406_10451194	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1032	Open in IMG/M
3300031911\|Ga0307412_10075987	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2306	Open in IMG/M
3300031938\|Ga0308175_101388373	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	783	Open in IMG/M
3300031939\|Ga0308174_10006416	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6429	Open in IMG/M
3300031943\|Ga0310885_10251828	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	895	Open in IMG/M
3300031996\|Ga0308176_10056191	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3257	Open in IMG/M
3300031996\|Ga0308176_10117916	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2370	Open in IMG/M
3300031996\|Ga0308176_10617290	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 21-71-4	1116	Open in IMG/M
3300032005\|Ga0307411_10063844	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2463	Open in IMG/M
3300032074\|Ga0308173_11490766	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	636	Open in IMG/M
3300032126\|Ga0307415_100192004	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1612	Open in IMG/M
3300034384\|Ga0372946_0626671	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	520	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.26%
Environmental	Environmental	42.74%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.26%
Terrestrial	Environmental → Terrestrial	41.13%
Aquatic	Environmental → Aquatic	1.61%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	41.94%
Soil	Environmental → Terrestrial → Soil	40.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.52%
Sediment	Environmental → Aquatic → Sediment	1.61%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	25.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.10%
Loam	Environmental → Terrestrial → Soil → Loam	6.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	25.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.10%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.06%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	8.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.84%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.61%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1058934661	3300000364	Soil	SLRLPRSWGXSSASGVAAGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREILVAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
JGI1027J12803_1084493276	3300000955	Soil	GLVAAGAIMGLLLGIGRRAGTAFRPLNATAYAVIGTRADDVWGFVWTLGHVTIIGVLVVLVLSAVAGILAAWLSPSQRTLREVFAAAGVALVGYFLHVHVVARVDGGLSALLSLGELRALYITLGIALVLGMRLAFSQSASTRRF*
Ga0062589_1015222691	3300004156	Soil	IGIGRRAGTAFRPLNATAYAVIGTRADGVWGFGNVTIIGVLVVLAMSAVAGMIAAWLSPSQRTLRVFLAAAGVAVVGYFFHVYVAARSDGGLSALLSIGELRALYVTLASALVLGMRLAFSHTASARRH*
Ga0062590_1021291261	3300004157	Soil	RAGTALRPVNATAYALLGTRADGVWDFDPIVTIAGVLVVLAVSATAGMVVARLSPSFRTLRTLVAAAGVALVGYFLHVHVVSRVDGGLSALLSIGEVRALYVIAASALVLGMRFAFSPGASAGTR*
Ga0062590_1029658921	3300004157	Soil	EASVTRRGIEAGLVASAAVLGVLIGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTFTGVLVVLVVGAMAGSIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYAVGASALVLGMRFAFSPGTSASRY*
Ga0062594_1000217511	3300005093	Soil	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGT
Ga0065712_100748653	3300005290	Miscanthus Rhizosphere	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTGANRN*
Ga0070658_118321391	3300005327	Corn Rhizosphere	IGTRADGVWGFGHVTIIGVLVVLALSAVAGILVARLSPSQRTLREIAAAAGVALIGYILHAHVVARIDGGLSALLSLGELRALYIAMASALVLGMRLAFSQSAGTRRF*
Ga0070676_104272082	3300005328	Miscanthus Rhizosphere	MIGLLIGIGRRAGTAFRPVNATAYAVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGSLVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0070676_116112611	3300005328	Miscanthus Rhizosphere	LIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTGANRN*
Ga0070690_1006861372	3300005330	Switchgrass Rhizosphere	FRPLNATAYAVIGTRADGVWGFGNVTIIGVLVVLAMSAVAGMIAAWLSPSQRTLRVFLAAAGVAVVGYFFHVYVAARSDGGLSALLSIGELRALYVTLASALVLGMRLAFSQSASARRF*
Ga0070677_102243601	3300005333	Miscanthus Rhizosphere	MLIGIGRRAGTALRPLNATAFTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTFRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSPGVSASRD*
Ga0070666_105048261	3300005335	Switchgrass Rhizosphere	GRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTIIGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHAHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0070682_1010271121	3300005337	Corn Rhizosphere	VASAAVLGLLTGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTLTGVVVVLAMGALAGMLVARLSPSFRTFRVVVAAAGVALVGYLLHVHLAARVDGGLSALLAVGELRALYAVGGSALVLGMRL
Ga0070687_1001920541	3300005343	Switchgrass Rhizosphere	PVSAPSTLQRGIAAGLVAAAAIMGLLIGIGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLRELLAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0070661_1001020473	3300005344	Corn Rhizosphere	VASAAVMGLLTGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTMVGVVVVLAVGALAGMIVARFSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLTVGELRALYAVGASALVLGMRLAFSRVTSAGRR*
Ga0070668_1016963261	3300005347	Switchgrass Rhizosphere	TAHVLLGTRADDVWGFDGVVTILGCVVVLVMSAMAGLVVSRLAPSHRTFRVLVAAAGVALVGYLLHLYVAARSVGGLSALLSIGELRALYVTLALALVSGMRLAFSSGASAVRH*
Ga0070669_1006210022	3300005353	Switchgrass Rhizosphere	LIGIGRRAGTALRPLNATAFTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTFRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSQGVSASRD*
Ga0070675_1016795262	3300005354	Miscanthus Rhizosphere	LIGIGRRAGTAFRPLNATAYAVIGTRADGVWGFGHVTIIGVLVVLALSAVAGILVARLSPSQRTLRDLVAAAGVALAGYFVHAHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0070671_1000050956	3300005355	Switchgrass Rhizosphere	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTSANRY*
Ga0070673_1012064761	3300005364	Switchgrass Rhizosphere	VSAPSTLQRGIAAGLVAAAAIIGLLIGIGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREILVAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0070659_1014954871	3300005366	Corn Rhizosphere	DGVWGFGHVTIIGVLVVLALSAVAGILVARLSPSQRTLREIAAAAGVALIGYILHAHVVARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0070667_1001319942	3300005367	Switchgrass Rhizosphere	MIGLLIGIGRRAGTAFRPVNATAYAVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHAHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0070678_1002027562	3300005456	Miscanthus Rhizosphere	MLIGIGRRAGTALRPLNATAFTLLGTRADGVWGFDAVVTLAGVVVVLVVSALAGMIVARLARSFRTFRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSPGVSARRD*
Ga0070662_1016627991	3300005457	Corn Rhizosphere	LNATAFTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTFRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSPGVSARRD*
Ga0070679_1013473512	3300005530	Corn Rhizosphere	ADGVWGFGHVTIIGVLVVLALSAVAGILVAWLSPSQRTLRELVAAAGVALPSYFVHVHVAARIDGGLSALLSLGELRALYITLATALVLGMRLAFSQSASARRF*
Ga0070684_1003536351	3300005535	Corn Rhizosphere	VIGTRADGVWGFGHVTIIGVLVVLALSAVAGILVARLSPSQRTLREIAAAAGVALIGYILHAHVVARIDGGLSALLSLGELRALYIAMASALVLGMRLAFSQSAGTRRF*
Ga0070672_1003923832	3300005543	Miscanthus Rhizosphere	VIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0070704_1022094021	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AILGLLLGIGRRAGTAFRPLNATAYSVIGTRADGVWGFVWSVGHVTIIGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0070664_1000058843	3300005564	Corn Rhizosphere	VASAAVTGLLTGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTMVGVVVVLAVGALAGMIVARFSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLTVGELRALYAVGASALVLGMRLAFSRGTSASRP*
Ga0070664_1000282614	3300005564	Corn Rhizosphere	VTRLGIEAGLVASAAVMGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTSANRN*
Ga0068857_1002060662	3300005577	Corn Rhizosphere	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTSANRN*
Ga0068859_1019298122	3300005617	Switchgrass Rhizosphere	AVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHAHVAARIDGGLSALLSLGELRALYITMASALVLGMRLAFSQSASARRF*
Ga0068851_100357431	3300005834	Corn Rhizosphere	YTVIGTRADGVWGFGHVTIIGVLVVLALSAVAGILVARLSPSQRTLREIAAAAGVALIGYILHAHVVARIDGGLSALLSLGELRALYIAMASALVLGMRLAFSQSASTRRF*
Ga0068858_1002098984	3300005842	Switchgrass Rhizosphere	VWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREILVAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0068860_1001376684	3300005843	Switchgrass Rhizosphere	TAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGSLVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0070712_1008023361	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PVNATAYAVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHVHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0074047_112277302	3300006576	Soil	GIGRRAGTAFRPLNATAYSVIGTRADGVWGFVWTSGHVTIIGVLVVLVLSAVAGILVAWLSPSQRTLRVIVAAVGVAVLGYFFHVYVAARLDGGLSALLSIGELRALYITLAGALVLGMRLAFSSSASARRF*
Ga0079222_100624531	3300006755	Agricultural Soil	TRADGVWGFDPIVTLTGVVVVLAMGALAGMLVARLSPSFRTFRVVVAAAGVALAGYLLHVHLAARVDGGLSALLAVGELRALYAVGGSALVLGMRLAFSRGTSAPRP*
Ga0079222_113692161	3300006755	Agricultural Soil	HVTIIGVVVVLALSAVAGILVARLSPSQRTLREIAAAAGVAFIGYFLHVHVVARIDGGLSALLSVGELRALYITLASALVLGMRLAFSQSASTRRF*
Ga0079220_103973062	3300006806	Agricultural Soil	ADGVWGFGHVTIIGVVVVLALSAVAGILVAWLSPSQRTLRELVAAAGVALLGYFVHAHLAARIDGGLSALLSFGELRALYLTLASALVLGMRLAFSQSASARRS*
Ga0075434_1022042461	3300006871	Populus Rhizosphere	AVIGTRADGVWGFVWSVGHVTIIGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHAHVAARIDGGLSALLSIGELRALYVTLAGALVLGMRLAFSHIASARRF*
Ga0079217_100124834	3300006876	Agricultural Soil	VAAAAVTGLLVGVGRRAGTALRPLNATAYTLLGPRADGVWGFDPIVTIVGVLVVLAVSALAGIIVARLSPSFRTFRVVLAAAGVALVGYLLHFHVAARVDGGLSALLSVGELRALYVTAASALVLGMRFAFSPVTSAGRV*
Ga0079215_103656402	3300006894	Agricultural Soil	GSGRRAGTALRPLNATAYTLLGPRADGVWGFDPIVTIVGVLVVLAVSALAGIIVARLSPSFRTFRVVLAAAGVALVGHLLHFHVAARVDGGLSALLSVGELRALYVTAASALVLGIRFAFSPVTSAGRV*
Ga0066709_1010224932	3300009137	Grasslands Soil	GTRADGVWGFGHVTIIGVLVVLVVSAVAGVVAAWLSPSHRALRVLVAAAGVALVGYFFHVYVAARIDGGLSALLSIGELRALYVTLASALVLGMRLAFSHDASARL*
Ga0111538_101994041	3300009156	Populus Rhizosphere	ASVRRRGIEAGLVASAAVMGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPFVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSSGTSANRY*
Ga0105241_113970051	3300009174	Corn Rhizosphere	ALRPVNATAYALLGTRADGVWGFDPVVTLVGVLVVLAMGALAGMLVARLSPSFRTFRVVVAAAGVALVGYLLHVHLAARVDGGLSALLAVGELRALYAVGASALVLGMRLAFSRGTSAPRP*
Ga0105238_123096121	3300009551	Corn Rhizosphere	DGVWGFDPIVTMVGVVVVLAVGALAGMIVARFSPSFRTFRVLVAAAEVALVGYLLHVHLAARVDGGLSALLTVGELRALYAVGAGALVLGMRFAFSSATSATRS*
Ga0105249_121709262	3300009553	Switchgrass Rhizosphere	LLGTRADGVWGFDTIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTGANRN*
Ga0126304_108995371	3300010037	Serpentine Soil	AAAMIGFLIGIGRRAGTAFRPLNATAATVLGTRADGVWGFDSFVTVVGVLVVLVLSTLAGTIVARLSPSFHTLRTLLAAAGVAIAGYLLHVHVAARMDVGLSALLSVGELRALYVTLASALVLGIRLAFSTGTSVARG*
Ga0126315_105350021	3300010038	Serpentine Soil	VLIGTRADDVWGFDAFVTIVGVVVVLALSTLAGTIVARLSPSFRTLRTVFAAAGVAFVGYLLHVNVAARMNVGLSALLSVGELRALYVTVASALVLGMRFAFSTGTSSERV*
Ga0126314_105224512	3300010042	Serpentine Soil	GIGRRAGTAFRPLNATAYSLLGTRADGVWGFDLIVTFTGVLVVLVVGALAGTIVARLSPSFRTFRVLVATAGVALVGYLLHTHLAARVDGGVSALLGVGELRGLYVVGACALVLGMRFAFSPGTSASRD*
Ga0126314_111123191	3300010042	Serpentine Soil	RPLNATAAALIGTRADNVWGFDAIVTITGVVVVLVLSTLAGMIVARLAPSFRTLRTLLAAAGVAIVGYLLHVHVAARKDVGLSALLSVGELRALYVTLAIAVALGMRFAFSSGASAHRH*
Ga0126311_101310051	3300010045	Serpentine Soil	RDASAARRGIEAGLVASSAVLGLLIGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTFTGVLVVLVVGALAGTVVARLSPSFRTLRTLVAAAGIAIVGYLLHVHVAARMDVGLSALLSVGELRALYFTLAGALMLGIRFAFSTGTSVARD*
Ga0134127_125201342	3300010399	Terrestrial Soil	ILGVLVVLALSVVAGSLVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0134123_106855472	3300010403	Terrestrial Soil	VLGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPVVTFVGVLVVLVVGAIAGSIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYAVGASALVLGMRFAFSPGTSASRY*
Ga0150984_1004839012	3300012469	Avena Fatua Rhizosphere	LVAAAAVLGLLIGIGRRAGTAFRPLNATAYAVIGTRADGVWGFGNVTIIGVLVVLAMSAVAGIVVAWLSPSQRTLRVLLAAAGVAVVGYCFHVYVAARIDGGLSALLSIGELRALYVTLAGALVLGMRLAFSHIASARRF*
Ga0150984_1083310952	3300012469	Avena Fatua Rhizosphere	ATAHVLGTRADDVWGFDGVVTIVGCVVVLVMSAMAGLVVARLAPSHRTFRVLVAAAGVALVGYLLHLHVAARSVGGLSALLSIGELRALYVTLALAMVVGMRLAFSSGTSAVRH*
Ga0157352_10432001	3300012519	Unplanted Soil	RADGVWGFVWSVGHVTIIGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHAHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0157296_101498191	3300012905	Soil	LNATAFTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTVRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSPGV
Ga0157302_104415331	3300012915	Soil	ADGVWGFDPIVTFVGVLVVLVVGAIAGSIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYAVGASALVLGMRFAFSPGTSASRY*
Ga0162650_1000186722	3300012939	Soil	RSPDRGDRRREPTITVRGLVAGLVASAAVLGLLIGIGRRAGTALRPLNATAYTLLGTRADGVWGFDAVVTLAGVVVVLVVSALAGMIVARLARSFRTFRVVVAGAGVALVGYLLHVHLVSRVDGGLSALLSLGELRALYLAGASALVLGMRVAFSPGVSANRD*
Ga0164299_105822812	3300012958	Soil	GVWGFGHVTIIGVVVVLALSAVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0164308_105050061	3300012985	Soil	MIGLLIGIGRRAGTAFRPVNATAYAVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHAHVAARIDGGLSALLSFGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0164308_110180592	3300012985	Soil	NATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREILVAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0157371_103337931	3300013102	Corn Rhizosphere	GLVAAAAILGLLIGIGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGSLVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0157370_110443852	3300013104	Corn Rhizosphere	RRAGTAFRPVNATAYAVIGTRADGVWGFVWRVGHVTIIGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHVHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF*
Ga0157378_116318532	3300013297	Miscanthus Rhizosphere	VSAPSTLQRGIAAGLVAAAAILGLLIGIGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREILVAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSAS
Ga0157375_102453051	3300013308	Miscanthus Rhizosphere	TAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0163163_121120671	3300014325	Switchgrass Rhizosphere	RPLNATAHVVLGTRADDVWGFDGVVTIVGCLVVLVMSVMAGLVVARLAPSHRTFRALVAAAGVALVGYLLHLNVAARSAGGLSALLSTGELRALYVTLALALVLGMRLAFSSGTSAVRH*
Ga0157380_106445961	3300014326	Switchgrass Rhizosphere	IGIGRRAGTALRPLNATAFTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTFRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSPGVSARRD*
Ga0157376_113197071	3300014969	Miscanthus Rhizosphere	IAAGLVAAAAILGLLIGIGRRAGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0182007_101972301	3300015262	Rhizosphere	VRRGIEAGLVASAAVMGLLIGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTIVGVVVVLAVGALAGMIVARFSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLSVGELRALYAVGATALVL
Ga0132256_1011063802	3300015372	Arabidopsis Rhizosphere	IMGLLIGIGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLAMSVVAGILVAWLSPSQRTLREVVAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0132255_1041055091	3300015374	Arabidopsis Rhizosphere	YTVIGTRADGVWGFVWSVGHVTILGVLVVLAMSVVAGILVAWLSPSQRTLREVVAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF*
Ga0163161_104186221	3300017792	Switchgrass Rhizosphere	VIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGSLVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF
Ga0190273_106076282	3300018920	Soil	LLGTRADDVWGFSGVVTTVGVAVVLVLSAMTGLLVARLAPSFRTLRALVAAAGVALVGYLLHLYVAARSPGGLSALLSLGELRALYVTLAVALVLGMRFAFSPGTSAHRH
Ga0193722_11259662	3300019877	Soil	TRADGVWDFDFGVTLAGVAVVLVISVMAGLAVARIATSFRRMQVELAAAGVSLVGYLLHLHVVARTPGGLAALLAIGELRALYVTLAVSLAAGMRFAFLPGTEGNGR
Ga0193699_103834551	3300021363	Soil	LLGIGRRAGTAFRPLNATAYSVLGTRADGVWGFNSVVTIVGVLVVLALSALAGMTVARLSPPHRTLRVLVAAAGVALVGYLLHLNVAARVDGGLSALLSVGELRALYVTLASALVLGMRFAFSQGTSAGRY
Ga0182009_103230851	3300021445	Soil	RAGTALRPLNATAYTLLGTRADGVWGFDPIVTLAGVLVVLALGALAGMIVARLSPSFRTFRVVVAAAGVALVGYLLHVHLVARVDGGLSALLAVGELRALYALGASALVLGMRLAFSRGTSASRP
Ga0222622_102971421	3300022756	Groundwater Sediment	ADGVWGFGNVTIIGVLVVLAMSAVAGIIAAWLSPSQRTLRVLVAAAGVAVVGYCFHVYVAARIDGGLSALLSIGELRALYVTLAGALVLGMRLAFSHIASARRF
Ga0222622_106163462	3300022756	Groundwater Sediment	IGIGRRAGTALRPLNATAYTLLGTRADGVWGFDAVVTLTGVVVVLVVGTLAGMIVARLARSYRTFRVVLAATGVALAGYFLHVHLVARVDGGLSALLSTGELRALYFAGASALVVGMRVAFSPGTSASRN
Ga0207688_100232634	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTGANRN
Ga0207688_102990201	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MLIGIGRRAGTALRPLNATAFTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTFRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSQG
Ga0207680_105411441	3300025903	Switchgrass Rhizosphere	MIGLLIGIGRRAGTAFRPVNATAYAVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAGVAVVGYFLHAHVAARIDGGLSALLSLGELRALYITLAVALVLGMRLAFSQSASARRF
Ga0207645_100273604	3300025907	Miscanthus Rhizosphere	MSGLLIGIGRRAGTAFRPLNATAYAVIGTRADGVWGFGNVTIIGVLVVLAMSAVAGMIAAWLSPSQRTLRVFLAAAGVAVVGYFFHVYVAARSDGGLSALLSIGELRALYVTLASALVLGMRLAFSHTASARRH
Ga0207645_106306912	3300025907	Miscanthus Rhizosphere	FVWSIGHVTILGVLVVLALSVVAGSLVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF
Ga0207705_102436062	3300025909	Corn Rhizosphere	VASAAVMGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTGANRN
Ga0207663_100556702	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MVTGPGLRALVAAAAIIGLLIGIGRRAGTAFRPLNATAYAVIGTRADGVWGFGHVTIIGVLVVLVLSAVAGILVAWLSPSQRTLREVLAAAAVAGVGYFLHVHVAARIDGGLSALLTLGELRALYITLGIALVVGMRLAFSQSASARRF
Ga0207649_111560151	3300025920	Corn Rhizosphere	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTSANRN
Ga0207694_109317362	3300025924	Corn Rhizosphere	IGLLIGIGRRAGTAFRPLNATAYAVIGTRADGVWGFGHVTILGVLVVLALSAVAGILVARLSPSQRTLREIAAAAGVALIGYILHAHVVARIDGGLSALLSLGELRALYIAMASALVLGMRLAFSQSAGTRRF
Ga0207659_100953681	3300025926	Miscanthus Rhizosphere	VRRQDVSVTRRGIEAGLVASAAVLGLLIGIGRRAGTALRPVNATAYALLGTRADGVWGFDPIVTLAGVVVVLVVGAMAGMIVARLSPSFRTFRVLVAAAGVALVGYLLHLHLAARLDGGLSALLVVGELRALY
Ga0207644_100472514	3300025931	Switchgrass Rhizosphere	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTSANRY
Ga0207706_107125741	3300025933	Corn Rhizosphere	MIGLLIGIGRRAGTAFRPVNATAYAVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLARALVVGMRLAFSQSASARRF
Ga0207709_118369621	3300025935	Miscanthus Rhizosphere	AGLVASAAVMGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTSANRY
Ga0207669_106215901	3300025937	Miscanthus Rhizosphere	MLIGIGRRAGTALRPLNATAFTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTFRAVVAAAGVALVGYFLHVHLVARIDGGLSALLSTGEMRALYLAGASALVLGMRVAFSQGVSASRD
Ga0207651_110161611	3300025960	Switchgrass Rhizosphere	VSAPSTLQRGIAAGLVAAAAIIGLLIGIGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLRELLAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF
Ga0207640_103173341	3300025981	Corn Rhizosphere	SVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF
Ga0207677_117735361	3300026023	Miscanthus Rhizosphere	LLIGIGRRAGTVFRPVNATAYAVIGTRADGVWGFVWSVGHVTILGVLVVLVLSAVAGILVAWLSPSQRTLRELLAASAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF
Ga0207703_104504411	3300026035	Switchgrass Rhizosphere	AVMGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTGANRN
Ga0207639_107298461	3300026041	Corn Rhizosphere	IGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALGVVAGILVAWLSPSQRTLREILAAAAVAVVGYFLHVHVVARIDGGLSALLSIGELRALYITLASALVVGMRLAFSQSASARRF
Ga0207639_118979461	3300026041	Corn Rhizosphere	LNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSLGRNTSSHVGA
Ga0207678_105213751	3300026067	Corn Rhizosphere	MGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYV
Ga0207678_112095711	3300026067	Corn Rhizosphere	AAAAILGLLIGIGRRSGTAFRPLNATAYTVIGTRADGVWGFVWSVGHVTILGVLVVLALSVVAGILVAWLSPSQRTLREIAAAAGVALIGYILHAHVVARIDGGLSALLSLGELRALYIAMASALVLGMRLAFSQSAGTRRF
Ga0207648_104692912	3300026089	Miscanthus Rhizosphere	PLNATAYALLGTRADGVWGFDPIVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSPGTSANRY
Ga0207698_117841201	3300026142	Corn Rhizosphere	DGVWGFGHVTIIGVLVVLALSAVAGILVARLSPSQRTLREIAAAAGVALIGYILHAHVVARIDGGLSALLSLGELRALYIAMASALVLGMRLAFSQSAGTRRF
Ga0209486_103796951	3300027886	Agricultural Soil	ARGLAAGLVASAAVLGLLIGIGRRAGTALRPLNATAYTLLGTRADGVWGFDAVVTLTGVVVVLVVSALAGMIVARLARSFRTFRVVIAGAGVALVGYLLHVHLVSRVDGGLSALLSLGELRALYFAGAIALVLGMRVAFSPGVSANRD
Ga0207428_102749942	3300027907	Populus Rhizosphere	VWGFDPFVTFVGVVVVLGVGALAGVIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLVVGELRALYVVGASALVLGMRFAFSSGTSANRY
Ga0307294_103484061	3300028810	Soil	IGIGRRAGTALRPLNATAYTLLGTRADGVWGFDAVVTLTGVVVVLVVGTLAGMIVARLARSYRTFRVVLAATGVALAGYFLHVHLVARVDGGLSALLSTGELRALYFAGASALVVGMRVAFSPGTSAGRN
Ga0268240_100034772	3300030496	Soil	VASAAVLGLLAGIGRRTGTALRPLNATAYTVLGTRADGVWGFDPIVTIVGVLVVLAMGALAGMIVARLSPSFRTFRVVVAAAGVALVGYLLHVHLAARVDGGLSALLAVGELRALYAVGASALVLGMRFAFSQGTSATRP
Ga0307410_103010001	3300031852	Rhizosphere	LRPLNATAYTVLGARADGVWGFDPIVTAVGVVVVLAVGALAGIVVARLSPSFRTLRVALAAAGVALLGYLLHLHVAARVDGGLSALLSVGELRALYLTAASALVLGMRFAFSPVTGTDRV
Ga0307406_104511942	3300031901	Rhizosphere	VRRGIEAGLVASGAVLGLLTGIGRRAGTALRPINATAYTLLGTRADGVWGFDPIVTLVGVLVVLAVGALAGMLVARLSPSFRTFRVVVAAAGVALVGYLLHVHLAARVDGGLSALLAVGELRALYAVGASALVLGMRLAFSRGTS
Ga0307412_100759871	3300031911	Rhizosphere	RADGVWGFDPIVTAVGVVVVLAVGALAGIVVARLSPSFRTLRVALAAAGVALLGYLLHLHVAARVDGGLSALLSVGELRALYLTAASALVLGMRFAFSPVTGTDRV
Ga0308175_1013883732	3300031938	Soil	MGLLTGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTVVGVVVVLAVGALAGMIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLAIGELRALYAVGASALVLGMRLAFSRGTSASRP
Ga0308174_100064164	3300031939	Soil	VLGLLIGIGRRAGTALRPLNATAYALLGTRADGVWGFDAIVTLVGVVVVLAMGALAGMLVARLSPSFRSFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLSIGELRALYAVGATALVLGMRLAFSPGASAVRD
Ga0310885_102518282	3300031943	Soil	ATAYTLLGTRADGVWGFDAVVTLTGVLVVLVVGALAGMIVARLARSYRTFRVVVAAAGVALVGYFLHVHLVARVDGGLSALLSIGELRALYLAGASALVLGMRVAFSPGASAIRD
Ga0308176_100561911	3300031996	Soil	VRGLVAGIVAAAALIGLLVGIGRRAGTAFRPLNATAHVLLGTRADDVWGFHGVVTVVGCVVVLAMSAMAGLVVARLTPSLRTFRVLAAAAGVALVGYLLHVHVAARSNGGLSALLSLGELRALYVTLALALVL
Ga0308176_101179163	3300031996	Soil	VARGLVGGMVAAASLIGLLLGMGRRTGTAFRPLNATAHMLLGTRADDVWGFNSVVTIVGVLVVLALSAMTGVVVAWLAPSFRTLRALVAAAGVALVGYLLHLHVAARSPGGLSALLSVGELRALYVTLPIALALGMRFAFSSGASAHRH
Ga0308176_106172902	3300031996	Soil	VASAAVMGLLTGIGRRAGTALRPLNATAYTLLGTRADGVWGFDPIVTVVGVVVVLAVGALAGMIVARLSPSFRTFRVLVAAAGVALVGYLLHVHLAARVDGGLSALLAIGELRALYAVGASALVLGMRLAFSRGTSASRP
Ga0308176_123526131	3300031996	Soil	AYAVIGTRADGVWGFGHVTIIGVLVVLALSAVAGILAARLSPSPRTLRELVVAAGVALFGYFVHVHVAARIDGGLSALLSLGELRALYTTLASALVLGMRLAFSQSASARRS
Ga0307411_100638444	3300032005	Rhizosphere	LLVGVGRRAGTALRPLNATAYTVLGARADGVWGFDPIVTAVGVVVVLAVGALAGFVVARLSPSFRTLRVVLAAAGVALLGYLLHLHVAARVDGGLSALLSVGELRALYLTAASALVLGMRFAFSPVTGTDRV
Ga0308173_114907661	3300032074	Soil	VTEPGTAAPLPRHDEPRIRRESSVVARGLAGGLVAGASLIGLLIGIGRRAGTAFRPLNATANVLLGTRADDVWGFNSVVTIVGVLVVLALSAMTGVVVAWLAPSFRTLRALVAAAGVALVGYLLHLHVAARSPGGLSALLSVGELRALYVTLPIALALGM
Ga0307415_1001920043	3300032126	Rhizosphere	LRPLNATAYTVLGARADGVWGFDPIVTAVGVVVVLAVGALAGIVVARLSPSFRTLRVVLAAAGVALLGYLLHLHVAARVDGGLSALLSVGELRALYLTAASALVLGMRFAFSPVTGTDRV
Ga0372946_0626671_122_520	3300034384	Soil	LLIGIGRRAGTAFRPLNATAHALLGARADDVWGFDGVVTIVGGLVVLVLSAMAGLVVARLAPSHRTLRVLTAAAGVALLGYLLNLHVAARAPGGLSQLLSVGELRALYVVLGVALALGMRFAFSSSTDASRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069146

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences