Metagenome / Metatranscriptome Family F069130

Overview

Basic Information

• Family ID: F069130
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 124
• Average Sequence Length: 41 residues
• Representative Sequence: PIAPGLAISETQFAELIDTCRHLDRHDRAAEKLIGLTIPS
• Number of Associated Samples: 101
• Number of Associated Scaffolds: 124

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.82 %
• % of genes near scaffold ends (potentially truncated): 97.58 %
• % of genes from short scaffolds (< 2000 bps): 88.71 %
• Associated GOLD sequencing projects: 97
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (70.161 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.645 % of family members)
• Environment Ontology (ENVO): Unclassified (37.903 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (54.839 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 41.18%
  β-sheet: 2.94%
  Coil/Unstructured: 55.88%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13432	TPR_16	17.74
PF00501	AMP-binding	5.65
PF01436	NHL	4.03
PF00903	Glyoxalase	4.03
PF00274	Glycolytic	4.03
PF03060	NMO	3.23
PF06983	3-dmu-9_3-mt	2.42
PF00296	Bac_luciferase	2.42
PF08240	ADH_N	1.61
PF13365	Trypsin_2	1.61

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	4.03
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	3.23
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	3.23
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	2.42
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	2.42
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.42
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	1.61
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	1.61
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.61
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.81

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.16 %
Unclassified	root	N/A	29.84 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.16 %
Unclassified	root	N/A	29.84 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.16 %
Unclassified	root	N/A	29.84 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.61 %
Unclassified	root	N/A	29.84 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.35 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.61 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.61 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.81 %
Unclassified	root	N/A	29.84 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.61 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	1.61 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.26 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.42 %
Unclassified	root	N/A	29.84 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	16.94 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.81 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.81 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.81 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.81 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.23 %
Unclassified	root	N/A	29.84 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.61 %
unclassified Caulobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales	1.61 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.81 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.61 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	1.61 %
Chroococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	0.81 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.42 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.81 %
Unclassified	root	N/A	29.84 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.61 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	1.61 %
Mesorhizobium albiziae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium albiziae	2.42 %
Microcystaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae	0.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.81 %
Unclassified	root	N/A	29.84 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.94 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.81 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.61 %
Caulobacterales bacterium 32-69-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-69-10	1.61 %
Mesorhizobium albiziae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium albiziae	2.42 %
Microcystis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis	0.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.81 %
Unclassified	root	N/A	29.84 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002245|JGIcombinedJ26739_101074732	All Organisms → cellular organisms → Bacteria	691
3300002245|JGIcombinedJ26739_101785143	Not Available	516
3300003505|JGIcombinedJ51221_10255442	All Organisms → cellular organisms → Bacteria	712
3300004091|Ga0062387_100469098	All Organisms → cellular organisms → Bacteria	870
3300005179|Ga0066684_10919863	Not Available	570
3300005184|Ga0066671_10521487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	764
3300005439|Ga0070711_100593436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	923
3300005530|Ga0070679_101672150	Not Available	584
3300005538|Ga0070731_10201520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1321
3300005560|Ga0066670_10132499	All Organisms → cellular organisms → Bacteria	1438

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.16%
Host-Associated	Host-Associated	4.84%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.03%
Plants	Host-Associated → Plants	4.84%
Terrestrial	Environmental → Terrestrial	91.13%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	3.23%
Peat	Environmental → Terrestrial → Peat	3.23%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.23%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.81%
Soil	Environmental → Terrestrial → Soil	86.29%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Loam	Environmental → Terrestrial → Soil → Loam	12.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.23%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.61%

Subtype

Habitat	Taxonomy	Distribution
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.03%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.06%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.58%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.23%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%

Habitat

Habitat	Taxonomy	Distribution
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.61%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.23%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.65%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.42%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.81%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.61%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.26%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1005403961	3300002245	Forest Soil	QPVIPGIAITAGQFAELVDTCRHLERLDTAGQGLIALTIPR*
JGIcombinedJ26739_1010747322	3300002245	Forest Soil	APGLAIGEAQFAELIDTCRHLDTIDAAAKKLIGLTIPG*
JGIcombinedJ26739_1017851432	3300002245	Forest Soil	APGLAIGETQFAELIDGCRHLDRVDRPAARLISLTIPS*
JGIcombinedJ51221_102554421	3300003505	Forest Soil	RPITPGLAIGETQFAELIDTCRRLDRTDRAAEKLIALTIPA*
Ga0062387_1004690982	3300004091	Bog Forest Soil	AGRIRPIAPGLAIGETQFAELIDTCGHLDRIDRAAQKLIALTIPS*
Ga0066684_109198632	3300005179	Soil	TPGLAISETQFAALIDTCRHLDRADRAAARLISLTIPREV*
Ga0066671_105214871	3300005184	Soil	QARRIRPITPGLAISDSQFAELINTCRHLDRVDRAAARLISRTIPS*
Ga0070711_1005934362	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	EQARRIQPISTGLAISEAQFAEVVDTCRRLDQFDAAAHRLIALTIPR*
Ga0070679_1016721502	3300005530	Corn Rhizosphere	TLTSRLQPIAKGLAIPARQFEELIDTCRHLEGVDNAARQLIARTVP*
Ga0070731_102015201	3300005538	Surface Soil	IKISPARFAELIDTCRRLDAIEGAAQKLVGLTIPT*
Ga0066670_101324991	3300005560	Soil	ARRIGPIAPGTAIGEAGFTELVDACRNLDRLDHAAERLIALTIPA*
Ga0070762_101556921	3300005602	Soil	PITPGLAISEAQFAELIDTCRHLDRHDRAAEKLIGLTIPS*
Ga0070763_101214282	3300005610	Soil	IAPGLAISETQFAELIDGCRHLDRVDRAAARLISLTVPA*
Ga0066903_1054912752	3300005764	Tropical Forest Soil	RIRPITPGLAIGEGQFGELIDTCRRLDRVEQTAQRLIALTTPMGA*
Ga0070712_1015456582	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GLGIPEAQFTRLIDTCRNLDSIDGAADKLVSLTIPA*
Ga0102924_10478923	3300007982	Iron-Sulfur Acid Spring	RRIRPVAPGLAIGEAQYAELIDTCRHLDTIDNAARRLIALTIPA*
Ga0111539_133720421	3300009094	Populus Rhizosphere	AIGEAQFDGLIDSCRRLDTLDRAAETLIGLTIPA*
Ga0066709_1023120901	3300009137	Grasslands Soil	THLNKPIAPGLAITQAQSAILIDACRHLDNIPGAAEKLISLTIP*
Ga0066709_1031235833	3300009137	Grasslands Soil	MRGIAPGLAISETQFAELIDTCRHLDTLDRAASSLIDLTLPA*
Ga0066709_1045751301	3300009137	Grasslands Soil	EISEARYAELIDTCRHLDRHDRAAAKLIALTLPS*
Ga0105249_130145161	3300009553	Switchgrass Rhizosphere	QPFSSGLAISEAQFAEVVDTCRRLDQLDAAGQRMIALTIPR*
Ga0126373_100740341	3300010048	Tropical Forest Soil	PGLAVSETQFAELIDTCRHLDRIDAAAQKLIALTIPS*
Ga0126373_111955101	3300010048	Tropical Forest Soil	PGLAISEGEFSELIDTCRRLDRTERAAERLIALTIPA*
Ga0126373_112586222	3300010048	Tropical Forest Soil	EVRRIRPIAAGLAISDAQFAELIDTCRRLDRAERAAQDLISLTLPLGRSATV*
Ga0126373_120719052	3300010048	Tropical Forest Soil	GLAISEAQFAELIDTCRHLDTIDRAAEKLIGLTIPS*
Ga0126373_131567972	3300010048	Tropical Forest Soil	APGLAIPESQFAELIDTCRNLDRVERAGGRLIALTIPA*
Ga0126319_12631842	3300010147	Soil	DFEEQARRIRPIAPGLAISDARFAELIDTCRNIDRIDRAAERLISLTIA*
Ga0126370_111852121	3300010358	Tropical Forest Soil	PGLAISEAEFGELIDCCRHLDRLERAAEKLIALTIPS*
Ga0126370_120165471	3300010358	Tropical Forest Soil	APGLAINKAQFAELIEACRHLDRADRAAGTLIKLTIPA*
Ga0126372_102057431	3300010360	Tropical Forest Soil	GLAIREGQFAELIDTCCHLDRHEQAAEKLIALTIPS*
Ga0126379_112569221	3300010366	Tropical Forest Soil	IRPIAPGLAISETQFAELIDTCRHLDGVDGAAKKLIALTVPG*
Ga0134121_131465841	3300010401	Terrestrial Soil	TPGLAISGIQFAELIDACRTLDRIDDAGRKLIALTIPA*
Ga0126359_17411823	3300010869	Boreal Forest Soil	PGLAISPAQFAELIDACRHLDDVDNAAARLIGLTIPA*
Ga0126350_111281742	3300010880	Boreal Forest Soil	RISPIVPGLAISPAQFAELIDTCRNLDRIDSTAQRLIALTIPG*
Ga0150983_149057641	3300011120	Forest Soil	RRIRPITPGLAISETQFAELIDTCRHLDRVDQAAARLISLTVPS*
Ga0137391_110740772	3300011270	Vadose Zone Soil	IAIGEAQYDRLIDCCRHLDTLDHAAETLIGLTIPG*
Ga0150985_1054972991	3300012212	Avena Fatua Rhizosphere	ISPIAPGLAISEAQFAELIDTCRHLDRVERGAQQLIALTVPS*
Ga0137387_109488132	3300012349	Vadose Zone Soil	LAIGESQFAELIDTCRRLDRLDRAASKLISLTIPV*
Ga0137390_109719632	3300012363	Vadose Zone Soil	GLAISEGQFTELIDTCRHLDRLDRAAHKLISLTIPA*
Ga0137358_101030634	3300012582	Vadose Zone Soil	ALALAIGETQFAELIDACRHLDRIDRAAERLISLTVPG*
Ga0137404_115910151	3300012929	Vadose Zone Soil	MLRITPGLAIDEAQFERLIETCRHLDGVERAAATLIALTIPG*
Ga0153915_129647052	3300012931	Freshwater Wetlands	IRPIAPGLAIAEAQYERLIDTCRHLDTLDHAAGELITLTIPG*
Ga0164305_117576531	3300012989	Soil	SAGLAISETQFAELVDTCRRLDRFDTAGRRLIALTIPR*
Ga0182008_1000425311	3300014497	Rhizosphere	RLAIKEGRFAELVDTCRKLDQFDAAAQKLIGLTIPR*
Ga0137412_109839791	3300015242	Vadose Zone Soil	ITPGLAIGETQFAELIDTCRRLDRTDRAAEKLIALTIPA*
Ga0137409_115382832	3300015245	Vadose Zone Soil	PGLAINEAQFTELIDTCRHLDGTDRAAEKLIALTIAS*
Ga0182036_100758633	3300016270	Soil	RIYPIASGLAVRETQFAELIDTCRRLDGTDRVAEKLIRLTIPS
Ga0182033_113644781	3300016319	Soil	RIRPIAPGLAISEAQYAKLLDTCRHLDDIDGAAEKLIALTIPS
Ga0182032_109922121	3300016357	Soil	SPPHPPDRPGVAIGNAQFAELIDCRGHLDLVDRAAEKLISLTIRS
Ga0182037_102016673	3300016404	Soil	RIRPIAAGLAVGETQFAELIDTCHHLDRMDRAAEKLIALTIPS
Ga0182037_117758172	3300016404	Soil	FDEQARRIRPIAAGLAVGETQFAELIDTCRHLDRLDLAAQKLIALTIPA
Ga0163161_107252321	3300017792	Switchgrass Rhizosphere	IAIGEAQFDRLIDSCRHLETLDRAAETLIGLTIPA
Ga0187778_111828051	3300017961	Tropical Peatland	ETGLAIAPAQYAELIDTCRRLDSVDNAAQKLIALTISG
Ga0187777_111361822	3300017974	Tropical Peatland	VAPGLAISEAQYDRLIDSCRHLDRLDRAAQTLIGLTVPG
Ga0190274_124661681	3300018476	Soil	ILPIAPGLAIPEPQFARLIDTCRNLERNDEAAHTLIGLTVPA
Ga0179590_11331182	3300020140	Vadose Zone Soil	EARRIRPITPGLAISETQFAALIDGCRRLDRVDRAAARLISLTVSA
Ga0210400_100592961	3300021170	Soil	RRIRPITPGLAISETQFAELIDGCRHLDRVDRAAARLISLTVPA
Ga0213882_100983432	3300021362	Exposed Rock	GLAISEAQFAALIDSCRHLDDLDRAAKLIALTIPT
Ga0210394_103046932	3300021420	Soil	RPIAPGLAISETQFAELIDGCRHLDRVDRAAARLISLTVPA
Ga0213871_102893101	3300021441	Rhizosphere	EEEARRIAPIASGLAIGEGQFARLIDGSRHLDRLDRAAEQLIRLTIPA
Ga0210402_117553732	3300021478	Soil	RRIRPVAAGLAIGEAQFAELIDTCRHLDRTDRAAQKLILLTIPL
Ga0210410_107998971	3300021479	Soil	IQPIAPGLAIPEIQFAALIDVCRNLDRIDNAASRLIALTLPHGG
Ga0210410_112789463	3300021479	Soil	PGLAIPEAQFAELIDACRHLDTIDHAAQKLIALTIPS
Ga0126371_118668151	3300021560	Tropical Forest Soil	PIAPGLAISETQFAELIDACRHLDDLDRAAQKLIALTIPP
Ga0126371_121210071	3300021560	Tropical Forest Soil	VCRIRPIAPGLAISEVQFVELIDACRHLDRVEQTAQHLIALTIPS
Ga0126371_122615831	3300021560	Tropical Forest Soil	RRIRPIAPGLAIPETQFVELIDACRRLDAIDRAADRLIALTIPA
Ga0242648_10201392	3300022506	Soil	PIAPGLAISETQFAELIDTCRHLDRHDRAAENLIGLTIPS
Ga0242654_103498611	3300022726	Soil	DFEEHARRIRPIAPGLAIGEAQFGELVDTCRHLDLMDRAAERVIALTVPA
Ga0207663_107676262	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	QARRIRPVTPGLAISEGQFTELIDACRHLEKIDGAAEKLISLTIDGGH
Ga0207665_113054922	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	TPGLAIGETQFAELIDTCRRLDRTDRAAEKLIALTIPA
Ga0209056_103556412	3300026538	Soil	LAIGETQFTELIDTCRHLDRIDRAAEKLIALTIPA
Ga0208097_10045411	3300027173	Forest Soil	RPITPALAISEAQFAELIDTCRHLDRHDRAAEKLIGLTIPS
Ga0209248_101547622	3300027729	Bog Forest Soil	RIRPIGPGLAISETQFSELIDTCRHLDRADRAAQQLIALTIPA
Ga0209488_109230242	3300027903	Vadose Zone Soil	GLAIGEAQFAELIDTCRHLDTIDAAAEKLIRLTIPV
Ga0209526_102633102	3300028047	Forest Soil	RRIKPIAPGLAIGEAQFAELIDACRHLDTLDAAAKKLIGLTIPG
Ga0302157_101796433	3300028813	Bog	PVKPGLAISPSRFDGLIDTCRHLDTIDTAASNLFVLTIPQ
Ga0222748_10160831	3300029701	Soil	PIAPGLAISETQFAELIDTCRHLDRHDRAAEKLIGLTIPS
Ga0311362_103089792	3300029913	Bog	LAIGGRQFSELIDCCRNLDHVDRAAEELIALTIPA
Ga0302275_101119154	3300030518	Bog	VKPGLAISPSRFDGLIDTCRHLDTIDTAASNLIVLTIPQ
Ga0311372_123528611	3300030520	Palsa	PIESGIAVSPARYAELTDTCRHLDEIDNAAQRLIGLTIPN
Ga0318538_101558031	3300031546	Soil	RRIRPIAPGFAISEAQFVELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAE
Ga0318538_105961012	3300031546	Soil	TSGLAISDKQFGELIDTCRHLDRIDRAADKLISLTIPA
Ga0318560_101139923	3300031682	Soil	AISEAQFVELIDTCRRLDRIDPAAEKLIGLTIPARTPQRSAD
Ga0310686_1192437271	3300031708	Soil	GLAISETQYDRLIDSCRNLETLDRAADTLIGLTIPA
Ga0318496_101802052	3300031713	Soil	AISEAQFVELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAD
Ga0306917_100349251	3300031719	Soil	GFAISEAQFVELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAD
Ga0306918_106306292	3300031744	Soil	HPPDRPGVAIGNAQFAELIDCRGHLDLVDRAAEKLISLTIRS
Ga0306918_110675411	3300031744	Soil	AAGLAVGETQFAELIDTCRHLDRMDHATEKLIALTIPS
Ga0306918_112200301	3300031744	Soil	IRPITSGLAISESQFAELIDTCRHLDHIDAAAGKLIGLTIPS
Ga0318502_109835781	3300031747	Soil	PSLAIGKAQFAELIDCRRHLDLVDRVAEKLISLTIRS
Ga0318492_105514222	3300031748	Soil	RIYPIASGLAVRETQFAELIDTCRRLDGTDRVAEKLIGLTIPS
Ga0318509_100834992	3300031768	Soil	RRIRPIAPGLAISEAQFVELIDTCRRLDRIDPAAEKLIGLTIPARTPQRSAD
Ga0318543_100052134	3300031777	Soil	PGLAISEAQFAELINTCRHLDHIDRAGEKLIGLTVSA
Ga0318543_103996691	3300031777	Soil	IAPGLAIGEPQFAELIDTCRHLERRDRAAPKLIALTIPA
Ga0318508_11568281	3300031780	Soil	PGLAIPEAQFVELIDTCRRLDRIDRAAQDLIALTVAT
Ga0318550_102300761	3300031797	Soil	AISEAQVVELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAD
Ga0318523_104099332	3300031798	Soil	QRIRPIAPGLAISEAQYAKLLDTCRHLDDIDGAAEKLIALTIPS
Ga0318512_103127601	3300031846	Soil	PITPGLAVSETQFDELIDTCRRLDRTDRAAERLIVLTIPS
Ga0318536_106532601	3300031893	Soil	ARRIYPIASGLAVRETQFAELIDTCRRLDGTDRVAEKLIRLTIPS
Ga0318551_105869561	3300031896	Soil	VELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAD
Ga0306923_100594171	3300031910	Soil	PGLAIGEPQFAELIDTCRHLERRDRAAPKLIALTIPA
Ga0306923_108918682	3300031910	Soil	REFILNFEEVDRRIRPIAPSLAIGKAQFAELIDCRRHLDLVDRVAEKLISLTIRS
Ga0306921_100844501	3300031912	Soil	PGFAISEAQFVELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAD
Ga0310916_103854301	3300031942	Soil	IAPGLAISEAQFVELIDTCRRLDRIDPAAEKLIGLTIPARTPQRSAD
Ga0310913_101318501	3300031945	Soil	IAISEAQFVELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAD
Ga0306926_101099941	3300031954	Soil	RPIAPGLAISETQFAELIDTCRQLDRLDRAAEQLISLTIPS
Ga0306926_115386662	3300031954	Soil	RIRPVASGLAISDAQFAELIDACRHLDGIEAAGQQLIALTIPR
Ga0306926_118201832	3300031954	Soil	EQARRIRPIAAGLAVGETQFAELIDTCRHLDRMDHATEKLIALTIPS
Ga0310911_105385851	3300032035	Soil	TPGLAIGEGQFGELIDTCRRLDRVEQAAQRLIALTTPMGA
Ga0318559_100061321	3300032039	Soil	IRPIAPGLAISEAQYAKLLDTCRHLDDIDGAAEKLIALTIPS
Ga0318545_102105082	3300032042	Soil	PGLAVSETQFDELIDTCRRLDRTDRAAERLIVLTIPS
Ga0318532_102749552	3300032051	Soil	IAGGLAVRETQFAELIDTCRRLDSTDRVAEKLIGLTIPS
Ga0318506_103339881	3300032052	Soil	SGLAISDKQFGELIDTCRHLDRIDRAADKLISLTIPA
Ga0318510_105389032	3300032064	Soil	IRPIAPGLAISEAQFAELLDSCRHLDLVDRAAEMLIGLTVPG
Ga0318514_101427661	3300032066	Soil	EFEEQARRIYPIAGGLAVRETQFAELIDTCRRLDSTDRVAEKLIGLTIPS
Ga0318514_105679542	3300032066	Soil	LAISEAQFAELIDTCRHLDHIDRAGEKLIGLTISA
Ga0306924_113974731	3300032076	Soil	LAIGEAQFAELIDTCRNLDRTDRAALKLISLTIPT
Ga0318577_100160381	3300032091	Soil	IRGVAPGLAITETQFAELIDCCRHLDRLDQAAEKLISLTIPS
Ga0318577_103909992	3300032091	Soil	PIAPGFAISEAQFVELIDTCRRLDRIDRAAEKLIGLTIPARTPQRSAD
Ga0306920_1042135711	3300032261	Soil	DFEEQARRIYPIASGLAVRETQFAELIDTCRRLDGTDRVAEKLIGLTIPS
Ga0348332_125855201	3300032515	Plant Litter	PGLAIAQAQFAELIDACRHLDRAERAAEKLIALTIP
Ga0310914_101813855	3300033289	Soil	IATGLAIGEPQFAELIDTCRHLERRDRAAPKLIALTIPA
Ga0310914_110884711	3300033289	Soil	GLAIPEAQFAALIDTCRRLDRIDRAAQNLIALTVAT
Ga0318519_108864822	3300033290	Soil	IRPIAAGLAVGETQFAELIDTCRHLDRMDHATEKLIALTIPS