Metagenome / Metatranscriptome Family F069041

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069041
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	43 residues
Representative Sequence	MAMTVQQIHPVAHLPLVLGVLRRLEVATVIDRLIPPHPAH
Number of Associated Samples	95
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.58 %
% of genes near scaffold ends (potentially truncated)	91.94 %
% of genes from short scaffolds (< 2000 bps)	94.35 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
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Most Common Taxonomy
Group	Bacteria (87.903 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (18.548 % of family members)
Environment Ontology (ENVO)	Unclassified (31.452 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1ICChiseqgaiiDRAFT_03285392 2F24TB_103021732 3JGI10213J12805_104813842 4JGI11643J12802_103535203 5JGI1027J12803_1088213341 6soilH2_103328192 7Ga0066395_102887052 8Ga0066395_109136191 9Ga0066683_106800641 10Ga0066680_106810492 11Ga0065704_105412042 12Ga0066388_1011341741 13Ga0066682_105477622 14Ga0070664_1009608032 15Ga0066903_1006212201 16Ga0066903_1010551431 17Ga0066903_1010587561 18Ga0066903_1020492121 19Ga0066903_1037100762 20Ga0066903_1041934033 21Ga0066903_1066019761 22Ga0066903_1067102032 23Ga0066903_1072099732 24Ga0066903_1089382312 25Ga0066903_1089390942 26Ga0068860_1015064061 27Ga0068862_1020899951 28Ga0081540_10253502 29Ga0075417_105660142 30Ga0075417_105841642 31Ga0075427_100166272 32Ga0066665_116031231 33Ga0075421_1004011321 34Ga0075421_1024673011 35Ga0075420_1009812603 36Ga0075425_1018166671 37Ga0075429_1015829982 38Ga0079215_108072111 39Ga0075419_108200852 40Ga0099829_103174762 41Ga0099828_101935611 42Ga0099827_115448582 43Ga0099827_115589121 44Ga0111539_103463913 45Ga0105245_106310641 46Ga0075418_102937361 47Ga0075418_126900801 48Ga0105247_102042271 49Ga0099792_111340422 50Ga0114129_107468583 51Ga0114129_108959421 52Ga0111538_128433411 53Ga0105249_100682304 54Ga0105249_118034831 55Ga0105347_12002561 56Ga0126374_100800513 57Ga0126380_120023732 58Ga0126384_101899903 59Ga0126384_120801541 60Ga0126382_103234491 61Ga0126382_105667101 62Ga0126376_109219502 63Ga0126376_132114961 64Ga0126372_128651051 65Ga0126378_110663792 66Ga0126377_109707511 67Ga0126377_128275051 68Ga0126377_129418291 69Ga0126377_133114571 70Ga0126379_112213332 71Ga0126379_119968422 72Ga0126383_116007551 73Ga0126383_130069251 74Ga0126383_130335161 75Ga0137392_107365481 76Ga0134048_13931321 77Ga0137404_102948801 78Ga0137404_109941622 79Ga0137407_104836001 80Ga0126375_100371124 81Ga0126375_103673431 82Ga0164300_101890702 83Ga0126369_107937953 84Ga0126369_133380771 85Ga0157375_128156321 86Ga0132256_1035581371 87Ga0132257_1003374181 88Ga0132255_1057509602 89Ga0182036_117839131 90Ga0182032_108467501 91Ga0182037_104289711 92Ga0182039_104092782 93Ga0182038_115506872 94Ga0066662_103318832 95Ga0180113_10754911 96Ga0210386_113967191 97Ga0207684_105401251 98Ga0207670_113091791 99Ga0207679_112575332 100Ga0207639_103026931 101Ga0209234_10255262 102Ga0209690_10387253 103Ga0209984_10239011 104Ga0209465_100319971 105Ga0209590_102072112 106Ga0209382_123281612 107Ga0268259_100958751 108Ga0102746_109694481 109Ga0318500_104519782 110Ga0318521_110470191 111Ga0310907_104747971 112Ga0306923_124408271 113Ga0310885_106041991 114Ga0318533_109732261 115Ga0310890_115857932 116Ga0306924_125188012 117Ga0310889_100313063 118Ga0310914_112727412 119Ga0247830_110529912 120Ga0370545_032304_3_107 121Ga0314787_013194_992_1102 122Ga0314792_257992_2_124 123Ga0314793_169870_366_503 124Ga0314798_156235_1_108
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1ICChiseqgaiiDRAFT_03285392 2JGI10213J12805_104813842 3JGI11643J12802_103535203 4soilH2_103328192 5Ga0066395_102887052 6Ga0066395_109136191 7Ga0066680_106810492 8Ga0065704_105412042 9Ga0066682_105477622 10Ga0066903_1006212201 11Ga0066903_1020492121 12Ga0066903_1041934033 13Ga0066903_1066019761 14Ga0066903_1089382312 15Ga0068860_1015064061 16Ga0081540_10253502 17Ga0075417_105841642 18Ga0075421_1004011321 19Ga0075419_108200852 20Ga0099827_115589121 21Ga0114129_108959421 22Ga0105347_12002561 23Ga0126380_120023732 24Ga0126384_101899903 25Ga0126384_120801541 26Ga0126376_109219502 27Ga0126376_132114961 28Ga0126372_128651051 29Ga0126379_112213332 30Ga0126383_116007551 31Ga0126383_130335161 32Ga0137392_107365481 33Ga0137404_102948801 34Ga0137407_104836001 35Ga0126375_100371124 36Ga0126375_103673431 37Ga0182037_104289711 38Ga0180113_10754911 39Ga0207684_105401251 40Ga0102746_109694481 41Ga0310907_104747971
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40 1Ga0075429_1015829982 2ICChiseqgaiiDRAFT_03285392 3F24TB_103021732 4JGI10213J12805_104813842 5JGI11643J12802_103535203 6soilH2_103328192 7Ga0066395_102887052 8Ga0066395_109136191 9Ga0066683_106800641 10Ga0066680_106810492 11Ga0065704_105412042 12Ga0066682_105477622 13Ga0066903_1010551431 14Ga0066903_1010587561 15Ga0066903_1020492121 16Ga0066903_1041934033 17Ga0066903_1066019761 18Ga0066903_1067102032 19Ga0066903_1072099732 20Ga0066903_1089382312 21Ga0068862_1020899951 22Ga0075417_105841642 23Ga0075427_100166272 24Ga0075421_1004011321 25Ga0075419_108200852 26Ga0099827_115448582 27Ga0099827_115589121 28Ga0075418_126900801 29Ga0114129_107468583 30Ga0114129_108959421 31Ga0111538_128433411 32Ga0105347_12002561 33Ga0126374_100800513 34Ga0126380_120023732 35Ga0126384_120801541 36Ga0126382_103234491 37Ga0126376_109219502 38Ga0126376_132114961 39Ga0126372_128651051 40Ga0126378_110663792 41Ga0126377_128275051 42Ga0126377_133114571 43Ga0126379_112213332 44Ga0126383_116007551 45Ga0126383_130069251 46Ga0137392_107365481 47Ga0137404_102948801 48Ga0137404_109941622 49Ga0137407_104836001 50Ga0126375_100371124 51Ga0126375_103673431 52Ga0132257_1003374181 53Ga0132255_1057509602 54Ga0182032_108467501 55Ga0182037_104289711 56Ga0182039_104092782 57Ga0066662_103318832 58Ga0180113_10754911 59Ga0210386_113967191 60Ga0207684_105401251 61Ga0207670_113091791 62Ga0207679_112575332 63Ga0209465_100319971 64Ga0209382_123281612 65Ga0268259_100958751 66Ga0102746_109694481 67Ga0318500_104519782 68Ga0318521_110470191 69Ga0310907_104747971 70Ga0310914_112727412 71Ga0314793_169870_366_503
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.29% β-sheet: 0.00% Coil/Unstructured: 64.71%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF01609	DDE_Tnp_1	2.42
PF14104	DUF4277	1.61
PF01656	CbiA	1.61
PF13551	HTH_29	0.81
PF12821	ThrE_2	0.81
PF13414	TPR_11	0.81
PF13613	HTH_Tnp_4	0.81
PF13546	DDE_5	0.81
PF13384	HTH_23	0.81
PF13560	HTH_31	0.81

Showing 1 to 10 of 45 entries

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COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	2.42
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	2.42
COG5421	Transposase	Mobilome: prophages, transposons [X]	2.42
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	2.42
COG3293	Transposase	Mobilome: prophages, transposons [X]	2.42
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	2.42
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.61
COG3517	Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family	Intracellular trafficking, secretion, and vesicular transport [U]	0.81
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.71 %
Unclassified	root	N/A	11.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.71 %
Unclassified	root	N/A	11.29 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.81 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.90 %
Unclassified	root	N/A	11.29 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.10 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.81 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.81 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.48 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.42 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.87 %
Unclassified	root	N/A	11.29 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	37.10 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.03 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	0.81 %
Candidatus Hydrogenedentes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes	0.81 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.81 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.42 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	5.65 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.81 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.61 %
Unclassified	root	N/A	11.29 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.81 %

Name	Rank	Taxonomy	Distribution
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	37.10 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.81 %
Chthonomonadetes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes	0.81 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5.65 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.42 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.81 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.81 %
Unclassified	root	N/A	11.29 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	0.81 %
unclassified Candidatus Hydrogenedentes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes	0.81 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.81 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.81 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.81 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	37.10 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.81 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.81 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Chthonomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales	0.81 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.81 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	0.81 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.81 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.81 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1.61 %
Unclassified	root	N/A	11.29 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	1.61 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Acaryochloridaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	37.10 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.81 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.81 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.81 %
Chamaesiphonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Chthonomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae	0.81 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	1.61 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.81 %
Leptospirillum	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum	0.81 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.81 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.81 %
Unclassified	root	N/A	11.29 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.81 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Acaryochloris	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.81 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	37.10 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.81 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.81 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.81 %
Chamaesiphon	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae → Chamaesiphon	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Chthonomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas	0.81 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	1.61 %
Fimbriiglobus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus	0.81 %
Leptospirillum sp. Group I	species group	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group I	0.81 %
Lichenibacterium ramalinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium ramalinae	0.81 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.81 %
Unclassified	root	N/A	11.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Acaryochloris	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.81 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	37.10 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	0.81 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.81 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	0.81 %
Chamaesiphon minutus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Chamaesiphonaceae → Chamaesiphon → Chamaesiphon minutus	0.81 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.81 %
Chthonomonas calidirosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas → Chthonomonas calidirosea	0.81 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	1.61 %
Fimbriiglobus ruber	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Fimbriiglobus → Fimbriiglobus ruber	0.81 %
Leptospirillum ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Leptospirillum → Leptospirillum sp. Group I → Leptospirillum ferrooxidans	0.81 %
Lichenibacterium ramalinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → Lichenibacterium ramalinae	0.81 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.81 %
Unclassified	root	N/A	11.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.81 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0328539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	589	Open in IMG/M
3300000550\|F24TB_10302173	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	628	Open in IMG/M
3300000858\|JGI10213J12805_10481384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris	781	Open in IMG/M
3300000890\|JGI11643J12802_10353520	All Organisms → cellular organisms → Bacteria → Proteobacteria	1689	Open in IMG/M
3300000955\|JGI1027J12803_108821334	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	972	Open in IMG/M
3300003324\|soilH2_10332819	Not Available	1861	Open in IMG/M
3300004633\|Ga0066395_10288705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	893	Open in IMG/M
3300004633\|Ga0066395_10913619	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	532	Open in IMG/M
3300005172\|Ga0066683_10680064	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005174\|Ga0066680_10681049	Not Available	634	Open in IMG/M

Showing 1 to 10 of 124 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.39%
Host-Associated	Host-Associated	26.61%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.61%
Plants	Host-Associated → Plants	26.61%
Terrestrial	Environmental → Terrestrial	71.77%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.35%
Sediment	Environmental → Aquatic → Sediment	0.81%
Soil	Environmental → Terrestrial → Soil	71.77%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.03%
Loam	Environmental → Terrestrial → Soil → Loam	14.52%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.81%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.61%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.06%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_03285392	3300000033	Soil	MALSVQQIHPVAHLPLVLGVLRHLEVATVIDSLIAPHPAHV
F24TB_103021732	3300000550	Soil	MAIAVQQSHPIAHLPLVLGVLRRLEVATIIDRLILPHPAHVLTP*
JGI10213J12805_104813842	3300000858	Soil	MALTVQQIQPVIILSPGVLRRLEVAMVIARPIPPYPAHMLSCGAGTVIAERHWMYLIA*
JGI11643J12802_103535203	3300000890	Soil	MAIAVQPIHPVAPVPVVLGVLRRLEVATVVDHLIPLHPAPVLSCGRGVEAV
JGI1027J12803_1088213341	3300000955	Soil	MALAVQQIDPVAHLPLVLGVLRRLEVATVIDRLIPPHPAH
soilH2_103328192	3300003324	Sugarcane Root And Bulk Soil	MTIAVQQIDPVAHLPLILVVLRRLDVATVIDCLIPPYPAHVLSCGRGLEALVQAILDGDQAL*
Ga0066395_102887052	3300004633	Tropical Forest Soil	MALTVQQIRPMAHLPLILGVLRRLEVATVIESLIAPHPKHVLSTGRGVEALVL
Ga0066395_109136191	3300004633	Tropical Forest Soil	MAIAVPQIYPLAHVPLVLGVLRHLAVATVMDHLIPPHPAYGLSPGRG
Ga0066683_106800641	3300005172	Soil	MAIAVQQIHSVAHLPLILGVLRRLEVATVIDRLIPPHPAHVL
Ga0066680_106810492	3300005174	Soil	MAMAVQTMHPMAQVPLVLGVLWRLEVATVIDRLIPPHPAHSLSCGRGV
Ga0065704_105412042	3300005289	Switchgrass Rhizosphere	MATPVQQMHPVAHLPLVLGVLRRLEVAAVIDRLIPPPSGAWALVRAWS*
Ga0066388_1011341741	3300005332	Tropical Forest Soil	MTMAVQQIHPIAHLPLVLGVLRRLEVATVIDRLIPPHPAHVL
Ga0066682_105477622	3300005450	Soil	MAITVQQMHPVAHLPLILGVLRRLGVATLIDGLIPPHPAHGLSCGRG
Ga0070664_1009608032	3300005564	Corn Rhizosphere	MAIAVQQIHPVAHLPLVLGVLRRLEVATVIDRLLPPHPAHVLSS
Ga0066903_1006212201	3300005764	Tropical Forest Soil	MAMTVQQIHPVAHLPLVLGVLRRLAVATVGDGLMP
Ga0066903_1010551431	3300005764	Tropical Forest Soil	MPVFVQQSHPIAHLPLVLGVLRRLEVATVIDGLIPPHPAHGL
Ga0066903_1010587561	3300005764	Tropical Forest Soil	MALTEQQIRPVAHLPLVLGVLRRLEVATVIDSLIAPHPAHVLST
Ga0066903_1020492121	3300005764	Tropical Forest Soil	MPVSVQHSYPIAHLPLVLGVLRRLEVATIIDCLIPPHPAHGLSCG
Ga0066903_1037100762	3300005764	Tropical Forest Soil	MAMTVQQIHPVAHLPLVLGVLRRLEVATLIDGLIPPHPAHGL
Ga0066903_1041934033	3300005764	Tropical Forest Soil	MAIAVQQIRPIAHLPLILGVLRRLEVATLVDGIIPLHP
Ga0066903_1066019761	3300005764	Tropical Forest Soil	MTIAVQQIRPIAHWPLGLGGLRRLEVASLIDALIPPHPAHVLSTGRGAEALVL
Ga0066903_1067102032	3300005764	Tropical Forest Soil	MAVAVQPIHPIAHVPLVLGVLRRLEVATIIDRLIPPHPAHGLSCGR
Ga0066903_1072099732	3300005764	Tropical Forest Soil	MTVAVQQISPVAHLPLILGVLRRLEIATVIDRLLPPHPAHVLSCGRGV
Ga0066903_1089382312	3300005764	Tropical Forest Soil	MAIAVQQVYPIAHLPLVLGVIRRLEVATGINRLVPPHPAHR
Ga0066903_1089390942	3300005764	Tropical Forest Soil	MAITVQQIHPVAHLPLVLGVLRRLEVATLIDGLIPPHPAHGL
Ga0068860_1015064061	3300005843	Switchgrass Rhizosphere	MALTVQQIHPVAHWPFILGVLRRLEVATVIENLIAPHPRQVLSIGRGVEALGLAILDGDH
Ga0068862_1020899951	3300005844	Switchgrass Rhizosphere	MALTVQQIHPVAHWPFILGVLRRLEVATVIENLIAPHPRQVLSIGRG
Ga0081540_10253502	3300005983	Tabebuia Heterophylla Rhizosphere	MAANGLIGINSTVQQIHPVAHLPLVLGVLRRLEVATVIDRLIPPHPAHGLSC
Ga0075417_105660142	3300006049	Populus Rhizosphere	MAITVQQIHPVAHLPLVLGVLRRLEVATLIDGLIPPH
Ga0075417_105841642	3300006049	Populus Rhizosphere	MAVSVQPMRPVAQVPLGLGVLRRLEVATVIDGLLA
Ga0075427_100166272	3300006194	Populus Rhizosphere	MALTVQQIRPVAHVPFILGVLQHLGVATVIECFIAPHPRHVLSTGRGVEAMVL
Ga0066665_116031231	3300006796	Soil	MAITVQQIHPVGHLPLVLGVLRRLEVATVIDRLIPPHPA
Ga0075421_1004011321	3300006845	Populus Rhizosphere	MGIAVQQIHPVAHLPLVLAVSRHLKVASLIDDRIPPHPAPGLST
Ga0075421_1024673011	3300006845	Populus Rhizosphere	MAIAVQQIHPVAHLPLVLGVLRRLEVATVIDHLIPPHPAHGLSCGR
Ga0075420_1009812603	3300006853	Populus Rhizosphere	MATTLQQMHPVAHLPLVLGVLRRLEVATVIDRLIPPHPAHGLSGGRG
Ga0075425_1018166671	3300006854	Populus Rhizosphere	MAMAVQQIHPIAHLPLVLGVLRCLEVATVIDRLIPPHPAHGL
Ga0075429_1015829982	3300006880	Populus Rhizosphere	MAMTVQQIHPVAHLPLVLGVLRRLEVATVIDRLIPPHPAH
Ga0079215_108072111	3300006894	Agricultural Soil	MAMTVQQIHPVAHWPLVLGVLRRLEVATLIDDLIPPHPAHGLSCG
Ga0075419_108200852	3300006969	Populus Rhizosphere	MAVAVQQISPVVHLPLVLGVLRRLEIAPVIDRLLPPHPAHVL
Ga0099829_103174762	3300009038	Vadose Zone Soil	MATTVQQIHPVAHLPLVLSVLRRLEVATVMDRLIPP
Ga0099828_101935611	3300009089	Vadose Zone Soil	MAIAVQQIHSVAHLPLVLGVLRRLEVATVVDRLIP
Ga0099827_115448582	3300009090	Vadose Zone Soil	MAITVQQMHPMAHVPLVLGVVRCLDVATAIDGLIPPHPAHGLSCGR
Ga0099827_115589121	3300009090	Vadose Zone Soil	MAMTVQQIHPVAHLPLVLVVLRSLEVSPLIDGLIPPY
Ga0111539_103463913	3300009094	Populus Rhizosphere	MAMTVQQMHPVAHLPLVLGVLRRLEVAPAIDRLIPPHPAHGLS
Ga0105245_106310641	3300009098	Miscanthus Rhizosphere	MAMTVQQIHPVAHLPLVLDVLRRLEVATLIDGLIPPHPAHGLSCGRGVEALV
Ga0075418_102937361	3300009100	Populus Rhizosphere	MAMAVQQIHPIAHLPLVLGVLRRLEVATIIDRLIPPHPAHV
Ga0075418_126900801	3300009100	Populus Rhizosphere	MATIVQQIHPVAHLPLVLGVLRRLEVAAVIDHLIPPHPAHGLSCG
Ga0105247_102042271	3300009101	Switchgrass Rhizosphere	MALTVQQIHPVAHWPFILGVLRRLEVATVIENLIAPHPRQVL
Ga0099792_111340422	3300009143	Vadose Zone Soil	MATIVQQIHPVAHLPLVLGVLRRLEVATVIDRLIPPHPAHGLSCGR
Ga0114129_107468583	3300009147	Populus Rhizosphere	MAITVQQIEPVAHLPLILGVLRRLEVATLIDQLIPPHPAH
Ga0114129_108959421	3300009147	Populus Rhizosphere	MAIAVQQIDPVAHLPLVLGVLRRLEVATMIDRLNPPARGALFA
Ga0111538_128433411	3300009156	Populus Rhizosphere	MAITVQQIHPIAHLPLVLGVLRRLEVATRIDGLIPPHPAQGLSCGR
Ga0105249_100682304	3300009553	Switchgrass Rhizosphere	MAIAVQQIHPIAHLPLVLGVLRRLEVATIIDRLILPHPAHVLTP*
Ga0105249_118034831	3300009553	Switchgrass Rhizosphere	MAMAVQQIHPIAHLPLVLGVLRRLEVATVIDRLIPPHPAH
Ga0105347_12002561	3300009609	Soil	MAIPIQQIQPVAHLPLVLGVLRRLEVATVVDGLIPVHSAHVLSCG
Ga0126374_100800513	3300009792	Tropical Forest Soil	MATTIQQIHPVAHLPRVLGVLRRLEVAPVIDRLIPPHPAHGLSC
Ga0126380_120023732	3300010043	Tropical Forest Soil	MAIAVQQMHPVAHVPLVLGVLRRLEVATVIAYMIPPPPAHGLSCGRGGEAMGLAMLAG
Ga0126384_101899903	3300010046	Tropical Forest Soil	VQQMRPVAHLPLVLGVLRRLKVASLIDDLIPPHPAH
Ga0126384_120801541	3300010046	Tropical Forest Soil	MAIAVQQIDPIAHLPLVLGVLRRLEVATVVDRLIPPHPAHELTTGQRPTSSPG*
Ga0126382_103234491	3300010047	Tropical Forest Soil	MAIAVQEIRPVAHLPLVLGVLRRLEVATVLDDLIPPHPAH
Ga0126382_105667101	3300010047	Tropical Forest Soil	MAIAVQQIDPIVHLPLILGVLRRLEVATVIDRLIPPHPAHELATGQRPTSSPG*
Ga0126376_109219502	3300010359	Tropical Forest Soil	MAMAVQQMYPVAHVPFMLEGVRRLEVATLLAQLLPPHPA
Ga0126376_132114961	3300010359	Tropical Forest Soil	MAITVPPIHPVAPWPVVLGVLRRLAVATVVDRLLPPHPAHGLA
Ga0126372_128651051	3300010360	Tropical Forest Soil	MAMAVQQMHPVAHVPLVLGVVRRLAVAPVIDSMIPPHPAP
Ga0126378_110663792	3300010361	Tropical Forest Soil	MAITVQQIYPVAHLPLVLGVLRRLEVATLIDGIIP
Ga0126377_109707511	3300010362	Tropical Forest Soil	MAMAVQTIHPVAHLPLVLGVLRRLEVAIVIDRLIPPHPAHGLSCGR
Ga0126377_128275051	3300010362	Tropical Forest Soil	MAIAVQQIRPVAHLPLVLGVLRRLKVASLIDDLIPPHPAH
Ga0126377_129418291	3300010362	Tropical Forest Soil	MAIAVQQIYPIAHLPLVLGVLRRLEVATVIDRLIPPHPAHGLAPGRG
Ga0126377_133114571	3300010362	Tropical Forest Soil	MAMAVQQIYPIAHLPLVLGVLRRLEVATIIDRLIPPHPAHVLS
Ga0126379_112213332	3300010366	Tropical Forest Soil	MAIAVQHIHPVAHLPLVLGVLRRLEAATVIDRLRLPHPRHVAA
Ga0126379_119968422	3300010366	Tropical Forest Soil	MATTVQQIHPVAHLPLVLGVLRRLEVATVIDRLISPHPAHGLSC
Ga0126383_116007551	3300010398	Tropical Forest Soil	MASTVQQMEPGAHMPFLLGVLRRWEGATRMDQLLPPHPAHGRSC
Ga0126383_130069251	3300010398	Tropical Forest Soil	MAMTVQPMHPVAHVPLVLGVGRRLEVATLIDGLIPP
Ga0126383_130335161	3300010398	Tropical Forest Soil	MPVSVRQSHPIAHLPLVLGVLRRLEVATVIDHLIPPHP
Ga0137392_107365481	3300011269	Vadose Zone Soil	MAIAVQQSDPVAHLPLVLGVLRHLEIATVIDRLIPP
Ga0134048_13931321	3300012400	Grasslands Soil	MAVSVQQIHPIAHLPLVLGVLRRLEVATVIDRLIPPHPA
Ga0137404_102948801	3300012929	Vadose Zone Soil	MALTVQQIQPVAHLSLVLGVLRRLEVATVIDRLIPPQPAHMLSCGRGAIIQ
Ga0137404_109941622	3300012929	Vadose Zone Soil	MASAVQQMHPMVHLPWVLGVLRRLEVATMIDRLIPPHPAHGLSCGRG
Ga0137407_104836001	3300012930	Vadose Zone Soil	MALAVQQIYPIAHLPLVLGFLRRLEIATIIDGLIASHPAHVLSAGRG
Ga0126375_100371124	3300012948	Tropical Forest Soil	MAPTGPQIHPVAHFPFVLGVLRRLEVATVMDRLLPP
Ga0126375_103673431	3300012948	Tropical Forest Soil	MATTVQQMHSVAHLPLVLGVVRRLEVAAVMDRLIPP
Ga0164300_101890702	3300012951	Soil	MAMAVQQIHPIAHLPLILGVLRRLEVAAIIDRLIPP
Ga0126369_107937953	3300012971	Tropical Forest Soil	MATTIQQIYPVAHLPLVLGVLRRLEVATVIDRLIPPHP
Ga0126369_133380771	3300012971	Tropical Forest Soil	MATTVQQIYPVAHLPLVLGVLRRLEVATVIDRLIPPHPAHGLSCGRG
Ga0157375_128156321	3300013308	Miscanthus Rhizosphere	MATTVQQMHPVAHLPLVLGVLRRLEVATIIDRLIPPH
Ga0132256_1035581371	3300015372	Arabidopsis Rhizosphere	MTVAVQQIYSVAHLPLILGVLRRLEVATVIDRLLPPHPAHVISC
Ga0132257_1003374181	3300015373	Arabidopsis Rhizosphere	MAVSVQHMHPIAHLPLVLGVLRRLEVATIIDRLIPPHPAHGLSC
Ga0132255_1057509602	3300015374	Arabidopsis Rhizosphere	MAVAVQQIHPVAHLPLVLGVLRRLEVATIIDRLLPPPP
Ga0182036_117839131	3300016270	Soil	MAMAVQQIHPIAHLPFVLGVLRRLEVATVIDRLIPPH
Ga0182032_108467501	3300016357	Soil	MVIAVQQIRPVAHLPLVLSVVRRLEVASLIDALIPPHPAHVLSTGRG
Ga0182037_104289711	3300016404	Soil	MAITIQQIYPLAHLSLALGVLRRLEVATLIDGLIPPHPAHGL
Ga0182039_104092782	3300016422	Soil	MAIAVQQMYPVAHLPLILGVLRRLEVATLIDRLIPPHPAHGLSCGRGV
Ga0182038_115506872	3300016445	Soil	MATTVQQIHPVAHLPLVLGVLRRLEVATVIDGLLPPHPAHVL
Ga0066662_103318832	3300018468	Grasslands Soil	MAMTVQQIYPVAHLPLVLGMLRRLEVAMVVAGLIPPHPAHVLSCGH
Ga0180113_10754911	3300020065	Groundwater Sediment	MAVAVQQIHPVAHLPLLLGVLRRLEVAPIVDRLLPPHPAHVLSGGRGGEAL
Ga0210386_113967191	3300021406	Soil	MATTIQQLPPVAHLPLVLGVLRRLEVATIIERLIPPHPAHG
Ga0207684_105401251	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAMTVQQRRPVAHVPVVLGGLRRLEVATILDRLIPP
Ga0207670_113091791	3300025936	Switchgrass Rhizosphere	MAMTVQQMHPVAHLPLVLGVLRRLEAATRLDDCIPPHPAHEHSCRRG
Ga0207679_112575332	3300025945	Corn Rhizosphere	MAITVQQIHPVAHLPFVLGVLRRLEVATVIDRLLPSH
Ga0207639_103026931	3300026041	Corn Rhizosphere	MAMAVQQIHPIAHLPLVLGVLRRLEVATVIDRLIPPH
Ga0209234_10255262	3300026295	Grasslands Soil	MAIAVQTIHPVAHLPLVLGVLRRLEVATVIDRLIPPHPAHGLS
Ga0209690_10387253	3300026524	Soil	MAMTVQQIHPVAHLPLVLGVLRRLEVATLIDGLIPPH
Ga0209984_10239011	3300027424	Arabidopsis Thaliana Rhizosphere	MAMTVQQIHPVAHLPLVLGVLRRLEVAAVIDRLIPPHPAHGLSC
Ga0209465_100319971	3300027874	Tropical Forest Soil	MTVAVPQMYSVAHLPLILGVLRRLEVATVIDRLLPPHPAHVLSCGRG
Ga0209590_102072112	3300027882	Vadose Zone Soil	MAVSVQQIHPVAHLPLVLGVLRRLEVATVIDRLLPSHPAHVLS
Ga0209382_123281612	3300027909	Populus Rhizosphere	MATTVQQRYPVAHLPLVLGVLRRLEVATVIDRLIPPIRR
Ga0268259_100958751	3300030499	Agave	MALTVQQIQHVAHFPLILGVLRRLEVATVIDRLIPPHPAHVLSAGRGGEALVL
Ga0102746_109694481	3300031054	Soil	MAVQQIRPAAPLPLVLDVLRRLEVASLLDDLMPMPPHPGHVLTTGHGVEAL
Ga0318500_104519782	3300031724	Soil	MAMTVQQIHPVAHLPLVLGVLRRLAVATVGNGLMPPHP
Ga0318521_110470191	3300031770	Soil	MAVSVQEIRPIAHLPLVLGVLRRLEVATIIENLIAPHPQHVLSTG
Ga0310907_104747971	3300031847	Soil	MALTVQQIRPVAHVPFILGVLRRLEVATIIERLIAPHP
Ga0306923_124408271	3300031910	Soil	MAIAVQQIYPVAHSPLILGVLRRLEVATLIDQLIPPHPAHGLSCGRG
Ga0310885_106041991	3300031943	Soil	MAITVQQIHPVAHLPLVLGVLRRLEVAAVIDHLIPPH
Ga0318533_109732261	3300032059	Soil	MAIAVQQIYPVAHSPLILGVLRRLEVATLIDQLIPPHP
Ga0310890_115857932	3300032075	Soil	MATTVQQIHPVAHLPLVLGVLRRLEVATVIDRLIPPHPAHGLSCGR
Ga0306924_125188012	3300032076	Soil	MALTVQQIRPVAHVPLVLGVLRRLEVATVIDSLIAPHPAH
Ga0310889_100313063	3300032179	Soil	MAMTVQQIHPVAHLPLVLGVLRRLEVATVIDRLIPPHP
Ga0310914_112727412	3300033289	Soil	MAMAVQQIRPIAHVPLILGVLRRLEVAAVVDGLIPPHP
Ga0247830_110529912	3300033551	Soil	MAIAVQQIHPIAHLPLVLGVLRRLEVATIIDRLILPHPAHVLTP
Ga0370545_032304_3_107	3300034643	Soil	MAMTVQQIRPVAHLPLVLGVLRRREVATSIDRLIP
Ga0314787_013194_992_1102	3300034665	Soil	MAIAVQTIHPVAHLPLVLGVLRRLEVATVIDRLIPPH
Ga0314792_257992_2_124	3300034667	Soil	MATTVQQIHPIAHLPLVLGVLRRLEVATVIDRLIPPHPAHG
Ga0314793_169870_366_503	3300034668	Soil	MAVSVQHIHPVAHLPLVLGVLRRLEVATVLDRLLPPHPAHGLSSGS
Ga0314798_156235_1_108	3300034673	Soil	MAVAVQQIHPVAHLPLVLGVLRRLEVATIIDRLLPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters