Metagenome / Metatranscriptome Family F068949

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068949
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	72 residues
Representative Sequence	MPAVDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKDA
Number of Associated Samples	83
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.05 %
% of genes near scaffold ends (potentially truncated)	29.84 %
% of genes from short scaffolds (< 2000 bps)	81.45 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.097 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (17.742 % of family members)
Environment Ontology (ENVO)	Unclassified (61.290 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (75.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.90% β-sheet: 0.00% Coil/Unstructured: 45.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00580	UvrD-helicase	18.55
PF00211	Guanylate_cyc	9.68
PF13396	PLDc_N	5.65
PF13361	UvrD_C	4.03
PF07995	GSDH	1.61
PF07589	PEP-CTERM	1.61
PF08240	ADH_N	1.61
PF03358	FMN_red	0.81
PF01411	tRNA-synt_2c	0.81
PF13245	AAA_19	0.81
PF02738	MoCoBD_1	0.81
PF01649	Ribosomal_S20p	0.81
PF01061	ABC2_membrane	0.81
PF02743	dCache_1	0.81
PF03971	IDH	0.81
PF13604	AAA_30	0.81
PF02852	Pyr_redox_dim	0.81
PF13561	adh_short_C2	0.81
PF00478	IMPDH	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	18.55
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	18.55
COG3973	DNA helicase IV	Replication, recombination and repair [L]	18.55
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	9.68
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	1.61
COG0013	Alanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.81
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	0.81
COG2838	Monomeric isocitrate dehydrogenase	Energy production and conversion [C]	0.81
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.10 %
Unclassified	root	N/A	37.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.10 %
Unclassified	root	N/A	37.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.10 %
Unclassified	root	N/A	37.90 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.23 %
Unclassified	root	N/A	37.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	27.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.26 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	12.90 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	9.68 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.23 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.81 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.90 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	9.68 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	2.42 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
Chitinivorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Chitinivorax	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.90 %
Aromatoleum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum	9.68 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	2.42 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.81 %
Chitinivorax tropicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Chitinivorax → Chitinivorax tropicus	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.90 %
unclassified Aromatoleum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum	9.68 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	2.42 %
Microvirga ossetica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica	0.81 %
Chitinivorax tropicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Chitinivorax → Chitinivorax tropicus	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.90 %
Aromatoleum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	9.68 %
Massilia aquatica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia aquatica	2.42 %
Microvirga ossetica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica	0.81 %
Chitinivorax tropicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Chitinivorax → Chitinivorax tropicus	0.81 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.81 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004266\|Ga0055457_10120608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	722	Open in IMG/M
3300004643\|Ga0062591_101740373	Not Available	633	Open in IMG/M
3300005162\|Ga0066814_10076533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	594	Open in IMG/M
3300005328\|Ga0070676_10148086	All Organisms → cellular organisms → Bacteria → Proteobacteria	1500	Open in IMG/M
3300005328\|Ga0070676_10200935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia aquatica	1306	Open in IMG/M
3300005330\|Ga0070690_100336951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1091	Open in IMG/M
3300005331\|Ga0070670_100012788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	7181	Open in IMG/M
3300005331\|Ga0070670_100038513	All Organisms → cellular organisms → Bacteria → Proteobacteria	4111	Open in IMG/M
3300005331\|Ga0070670_101960921	Not Available	539	Open in IMG/M
3300005333\|Ga0070677_10050085	All Organisms → cellular organisms → Bacteria → Proteobacteria	1685	Open in IMG/M
3300005347\|Ga0070668_100097589	All Organisms → cellular organisms → Bacteria	2324	Open in IMG/M
3300005347\|Ga0070668_101896281	Not Available	549	Open in IMG/M
3300005347\|Ga0070668_102137605	Not Available	517	Open in IMG/M
3300005347\|Ga0070668_102162439	Not Available	514	Open in IMG/M
3300005353\|Ga0070669_100197866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1580	Open in IMG/M
3300005355\|Ga0070671_100228160	All Organisms → cellular organisms → Bacteria → Proteobacteria	1580	Open in IMG/M
3300005365\|Ga0070688_101421020	Not Available	563	Open in IMG/M
3300005367\|Ga0070667_100387033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia aquatica	1271	Open in IMG/M
3300005367\|Ga0070667_101071613	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005441\|Ga0070700_100516954	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300005441\|Ga0070700_101599594	Not Available	557	Open in IMG/M
3300005456\|Ga0070678_102045700	Not Available	542	Open in IMG/M
3300005457\|Ga0070662_101447570	Not Available	592	Open in IMG/M
3300005457\|Ga0070662_101804083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	528	Open in IMG/M
3300005459\|Ga0068867_100541607	Not Available	1007	Open in IMG/M
3300005539\|Ga0068853_101363032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	686	Open in IMG/M
3300005543\|Ga0070672_100062667	All Organisms → cellular organisms → Bacteria → Proteobacteria	2935	Open in IMG/M
3300005548\|Ga0070665_100145002	All Organisms → cellular organisms → Bacteria → Proteobacteria	2378	Open in IMG/M
3300005577\|Ga0068857_101042673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300005617\|Ga0068859_102772648	Not Available	538	Open in IMG/M
3300005617\|Ga0068859_102827608	Not Available	532	Open in IMG/M
3300005618\|Ga0068864_100762473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	949	Open in IMG/M
3300005618\|Ga0068864_101197146	Not Available	758	Open in IMG/M
3300005718\|Ga0068866_11018167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	589	Open in IMG/M
3300005843\|Ga0068860_100005019	All Organisms → cellular organisms → Bacteria → Proteobacteria	13473	Open in IMG/M
3300005843\|Ga0068860_102827754	Not Available	503	Open in IMG/M
3300006237\|Ga0097621_101811782	Not Available	582	Open in IMG/M
3300006572\|Ga0074051_11341768	Not Available	533	Open in IMG/M
3300006844\|Ga0075428_100200090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2160	Open in IMG/M
3300006969\|Ga0075419_10768260	Not Available	688	Open in IMG/M
3300009137\|Ga0066709_102917064	Not Available	630	Open in IMG/M
3300009148\|Ga0105243_12149093	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300009176\|Ga0105242_10994444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	846	Open in IMG/M
3300009177\|Ga0105248_11929689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	670	Open in IMG/M
3300009553\|Ga0105249_10283788	Not Available	1655	Open in IMG/M
3300010400\|Ga0134122_10105112	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300010400\|Ga0134122_10562977	Not Available	1045	Open in IMG/M
3300010400\|Ga0134122_12706659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	548	Open in IMG/M
3300010401\|Ga0134121_10678637	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300010401\|Ga0134121_11388402	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300010403\|Ga0134123_10474029	All Organisms → cellular organisms → Bacteria → Proteobacteria	1170	Open in IMG/M
3300011422\|Ga0137425_1179108	Not Available	530	Open in IMG/M
3300012951\|Ga0164300_10198136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	981	Open in IMG/M
3300013296\|Ga0157374_11039263	Not Available	839	Open in IMG/M
3300013297\|Ga0157378_11443219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	732	Open in IMG/M
3300013297\|Ga0157378_11522442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	714	Open in IMG/M
3300013306\|Ga0163162_10714140	Not Available	1123	Open in IMG/M
3300013306\|Ga0163162_12159498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	639	Open in IMG/M
3300013306\|Ga0163162_13322251	Not Available	515	Open in IMG/M
3300013308\|Ga0157375_11609033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	768	Open in IMG/M
3300013308\|Ga0157375_12127179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	668	Open in IMG/M
3300014304\|Ga0075340_1096727	Not Available	588	Open in IMG/M
3300014324\|Ga0075352_1267624	Not Available	533	Open in IMG/M
3300014325\|Ga0163163_10022751	All Organisms → cellular organisms → Bacteria → Proteobacteria	5939	Open in IMG/M
3300014969\|Ga0157376_12115001	Not Available	601	Open in IMG/M
3300014969\|Ga0157376_13057597	Not Available	507	Open in IMG/M
3300015201\|Ga0173478_10048112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1382	Open in IMG/M
3300015371\|Ga0132258_10361808	All Organisms → cellular organisms → Bacteria → Proteobacteria	3592	Open in IMG/M
3300015371\|Ga0132258_10383226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3488	Open in IMG/M
3300015371\|Ga0132258_10753577	All Organisms → cellular organisms → Bacteria → Proteobacteria	2453	Open in IMG/M
3300015371\|Ga0132258_10822704	All Organisms → cellular organisms → Bacteria	2342	Open in IMG/M
3300015371\|Ga0132258_11700084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	1592	Open in IMG/M
3300015371\|Ga0132258_13405766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1092	Open in IMG/M
3300015372\|Ga0132256_100601589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1214	Open in IMG/M
3300015372\|Ga0132256_102580363	Not Available	609	Open in IMG/M
3300015373\|Ga0132257_100655512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1301	Open in IMG/M
3300015373\|Ga0132257_100854484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia aquatica	1138	Open in IMG/M
3300015374\|Ga0132255_101828018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	923	Open in IMG/M
3300015374\|Ga0132255_103029179	Not Available	717	Open in IMG/M
3300015374\|Ga0132255_105760040	Not Available	524	Open in IMG/M
3300018073\|Ga0184624_10181670	All Organisms → cellular organisms → Bacteria → Proteobacteria	934	Open in IMG/M
3300018476\|Ga0190274_10030953	All Organisms → cellular organisms → Bacteria	3652	Open in IMG/M
3300018476\|Ga0190274_10974711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	920	Open in IMG/M
3300018476\|Ga0190274_12749675	Not Available	589	Open in IMG/M
3300021082\|Ga0210380_10274551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	766	Open in IMG/M
3300021082\|Ga0210380_10431151	Not Available	604	Open in IMG/M
3300021082\|Ga0210380_10547433	Not Available	531	Open in IMG/M
3300025315\|Ga0207697_10015094	All Organisms → cellular organisms → Bacteria → Proteobacteria	3195	Open in IMG/M
3300025551\|Ga0210131_1102700	Not Available	500	Open in IMG/M
3300025893\|Ga0207682_10219558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	879	Open in IMG/M
3300025893\|Ga0207682_10272156	Not Available	791	Open in IMG/M
3300025908\|Ga0207643_10139430	All Organisms → cellular organisms → Bacteria → Proteobacteria	1447	Open in IMG/M
3300025908\|Ga0207643_10355795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	920	Open in IMG/M
3300025923\|Ga0207681_10347458	Not Available	1187	Open in IMG/M
3300025925\|Ga0207650_10118478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2058	Open in IMG/M
3300025925\|Ga0207650_11544257	Not Available	564	Open in IMG/M
3300025926\|Ga0207659_10118449	All Organisms → cellular organisms → Bacteria → Proteobacteria	2025	Open in IMG/M
3300025931\|Ga0207644_10019976	All Organisms → cellular organisms → Bacteria → Proteobacteria	4550	Open in IMG/M
3300025931\|Ga0207644_10627053	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300025936\|Ga0207670_10361742	All Organisms → cellular organisms → Bacteria → Proteobacteria	1151	Open in IMG/M
3300025936\|Ga0207670_11935197	Not Available	501	Open in IMG/M
3300025940\|Ga0207691_10302228	Not Available	1375	Open in IMG/M
3300025945\|Ga0207679_10346497	All Organisms → cellular organisms → Bacteria → Proteobacteria	1293	Open in IMG/M
3300025960\|Ga0207651_12012568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	519	Open in IMG/M
3300025960\|Ga0207651_12026589	Not Available	517	Open in IMG/M
3300025972\|Ga0207668_10195104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1608	Open in IMG/M
3300025972\|Ga0207668_10853758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	808	Open in IMG/M
3300025986\|Ga0207658_10217298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1606	Open in IMG/M
3300026041\|Ga0207639_11891791	Not Available	558	Open in IMG/M
3300026089\|Ga0207648_10223030	Not Available	1676	Open in IMG/M
3300026121\|Ga0207683_10560824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica	1056	Open in IMG/M
3300028380\|Ga0268265_10140054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2024	Open in IMG/M
3300028381\|Ga0268264_10030970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Chitinivorax → Chitinivorax tropicus	4386	Open in IMG/M
3300031170\|Ga0307498_10462508	Not Available	511	Open in IMG/M
3300031720\|Ga0307469_12282105	Not Available	528	Open in IMG/M
3300031740\|Ga0307468_100030231	All Organisms → cellular organisms → Bacteria	2569	Open in IMG/M
3300032174\|Ga0307470_11195843	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300032180\|Ga0307471_102832302	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300032205\|Ga0307472_102400535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Aromatoleum → unclassified Aromatoleum → Aromatoleum sp.	535	Open in IMG/M
3300032829\|Ga0335070_10093999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3154	Open in IMG/M
3300033004\|Ga0335084_10303619	All Organisms → cellular organisms → Bacteria → Proteobacteria	1650	Open in IMG/M
3300033433\|Ga0326726_11875130	Not Available	584	Open in IMG/M
3300034115\|Ga0364945_0051856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1147	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	67.74%
Environmental	Environmental	32.26%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	67.74%
Terrestrial	Environmental → Terrestrial	26.61%
Aquatic	Environmental → Aquatic	5.65%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	39.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.61%
Soil	Environmental → Terrestrial → Soil	25.00%
Freshwater	Environmental → Aquatic → Freshwater	2.42%
Marine	Environmental → Aquatic → Marine	1.61%
Sediment	Environmental → Aquatic → Sediment	1.61%
Roots	Host-Associated → Plants → Roots	1.61%
Peat	Environmental → Terrestrial → Peat	0.81%
Floodplain	Environmental → Terrestrial → Floodplain	0.81%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	29.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.87%
Loam	Environmental → Terrestrial → Soil → Loam	4.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.23%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.42%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.61%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.61%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	29.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.03%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.61%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	17.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	8.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.03%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.23%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.42%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.61%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.61%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.81%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014304	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025551	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055457_101206082	3300004266	Natural And Restored Wetlands	MPLMRARDTPESEVARLVRELEEAEAYEQSLRQTIIAVRDQLADGHTERALSMLNEALSTIDSATDVVVPHKDV*
Ga0062591_1017403732	3300004643	Soil	MAPSPASGGPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKDG*
Ga0066814_100765331	3300005162	Soil	MPAVDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0070676_101480862	3300005328	Miscanthus Rhizosphere	MAPTPASGAEDSESARLLHELEAAEAYEQKLRQVIISVKNELAAGHHERALSMLNEALNDIDSQTDVVVPQRDA*
Ga0070676_102009352	3300005328	Miscanthus Rhizosphere	MAPSPASGGPDSEAARLLRELEAAEAYEQKLRQIIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKGA*
Ga0070690_1003369512	3300005330	Switchgrass Rhizosphere	MAAMDPRRDPESEIARLLRELEEAEIYTQKLRQTIVSVRDALTQGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0070670_1000127882	3300005331	Switchgrass Rhizosphere	MAPTPASGAEDSESARLLRELEAAEAYEQKLRQVIVSVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDG*
Ga0070670_1000385133	3300005331	Switchgrass Rhizosphere	MALTPASGAPESESARLLRELEAAEAYEQKLRQIIVSVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHPDR*
Ga0070670_1019609211	3300005331	Switchgrass Rhizosphere	MPAKPEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNYIDSATDVVVPHKGP*
Ga0070677_100500852	3300005333	Miscanthus Rhizosphere	MPAKPEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNYIDSATDVVVPPKGP*
Ga0070677_108406652	3300005333	Miscanthus Rhizosphere	MATPASGAPDSETARLLRELEAAEAYEQKLRQIIVSVKNELASGHTERALSMLNEALNDI
Ga0070668_1000975893	3300005347	Switchgrass Rhizosphere	DPELEVGRLIRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDR*
Ga0070668_1018962811	3300005347	Switchgrass Rhizosphere	MALTPASGAPERESARLLRELEAAEAYEQKLRQIIVSVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHPDR*
Ga0070668_1021376051	3300005347	Switchgrass Rhizosphere	MAAMDARSEPQSEVDRLLRELEAAELYEQQLRQTIVSVRDELAAGHAERALSMLNAALNDIDAATDVVV
Ga0070668_1021624391	3300005347	Switchgrass Rhizosphere	AARCRKIKRSEKKKGPMPPTPPAGAPDNEAARLLRELEAAEAYEQKLRQVIVSVKNELAAGHTERALSMLNEALNDIDSATDVVVPHKDG*
Ga0070669_1001978662	3300005353	Switchgrass Rhizosphere	HPMALTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR*
Ga0070671_1002281601	3300005355	Switchgrass Rhizosphere	MTTMDARGDPESESARLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPH
Ga0070688_1014210202	3300005365	Switchgrass Rhizosphere	MATPAAGAPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKDA*
Ga0070667_1003870332	3300005367	Switchgrass Rhizosphere	MALTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNE
Ga0070667_1010716132	3300005367	Switchgrass Rhizosphere	MMNARGDPESESARLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0070700_1005169542	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MALTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR*
Ga0070700_1015995941	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	APPAGEGEVTRLVRELEAAEAYEQRLRQTIVAVRDQLAAGHAERALSMLNEALNYIDSATDFVVPHKDP*
Ga0070678_1020457002	3300005456	Miscanthus Rhizosphere	SEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR*
Ga0070662_1014475701	3300005457	Corn Rhizosphere	MALTPASGAPESESARLLRELEAAEAYEQKLRQIIVSVKNELAAGHHERALSMLNEALNEIDSQTDVVVP
Ga0070662_1018040832	3300005457	Corn Rhizosphere	EVGRLIRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDR*
Ga0068867_1005416072	3300005459	Miscanthus Rhizosphere	MAAMDNRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSAT
Ga0068853_1013630321	3300005539	Corn Rhizosphere	ESARLLRELEAAEAYEQKLREVIVSVKNELAAGHHERALSMLNEALNDIDSQTDVVVPQRDA*
Ga0070672_1000626672	3300005543	Miscanthus Rhizosphere	MAAMDNRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0070665_1001450021	3300005548	Switchgrass Rhizosphere	MATPAAGAPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKGA*
Ga0068857_1010426732	3300005577	Corn Rhizosphere	MATPAAGAPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKDG*
Ga0068859_1027726481	3300005617	Switchgrass Rhizosphere	EHPMALTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR*
Ga0068859_1028276081	3300005617	Switchgrass Rhizosphere	PEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNYIDSATDVVVPHKGP*
Ga0068864_1007624732	3300005618	Switchgrass Rhizosphere	MPAKPAPPAGEGEVTRLVRELEAAEAYEQRLRQTIVAVRDQLAAGHAERALSMLNEALNYIDSATDVVVPHKDP*
Ga0068864_1011971461	3300005618	Switchgrass Rhizosphere	MALTPASGAPESESARLLRELEAAEAYEQKLRQIIVSVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDP*
Ga0068866_110181671	3300005718	Miscanthus Rhizosphere	MAAMDPRRDPESEIARLLRELEEAEIYTQKLRQTIVGVRDALTQGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0068860_1000050197	3300005843	Switchgrass Rhizosphere	MALTPASESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR*
Ga0068860_1028277542	3300005843	Switchgrass Rhizosphere	MPAKPEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNYID
Ga0097621_1018117821	3300006237	Miscanthus Rhizosphere	MPAMDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDAATDVVVPHRDA*
Ga0074051_113417682	3300006572	Soil	VARLLRELESAELYEQQLRQTIVSVRDELAGGHVERALSMLNAALNDIDSATDVVVPHKKA*
Ga0075428_1002000902	3300006844	Populus Rhizosphere	MPPTPPSGAPDTEAARLLRELEAAEAYEQKLRQVIVSVKNELAAGHTERALSMLNEALNDIDSATDVVVPHKDG*
Ga0075419_107682602	3300006969	Populus Rhizosphere	MPPTPPSGAPDTEAARLLRELEAAEAYEQKLRQVIVSVKNELAAGHTERALSMLNEALNDIDSATDVVVPHKDR*
Ga0066709_1029170642	3300009137	Grasslands Soil	MTANPTRGAAESEVTRLVRELEAAEAYEQRLRQTITAVRDQLAAGHSERALSMLNEALNYIDSATDVVVPHKDP*
Ga0105243_121490932	3300009148	Miscanthus Rhizosphere	MAAIDGRTDPEGEVGRLIRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVP
Ga0105242_109944441	3300009176	Miscanthus Rhizosphere	MDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHRDA*
Ga0105248_119296892	3300009177	Switchgrass Rhizosphere	MAAMDNRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSATDVVVPHKDV*
Ga0105249_102837882	3300009553	Switchgrass Rhizosphere	MAAMDNRRDPESEVARLLCELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0134122_101051123	3300010400	Terrestrial Soil	MDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDAATDVVVPHKDA*
Ga0134122_105629772	3300010400	Terrestrial Soil	MPAKDTRGVPESEEARLLRELEAAEAYEQRLRQVIVNVKEALAAGQTERAQSMLNEALNDIDSATDVVVPHKDG*
Ga0134122_127066591	3300010400	Terrestrial Soil	MAAIDGRTDPELEVGRLIRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPRKDA*
Ga0134121_106786372	3300010401	Terrestrial Soil	MPAMDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDAATDVVVPHKDA*
Ga0134121_113884021	3300010401	Terrestrial Soil	MPAKPEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNHIDSATDVVVPHKG
Ga0134123_104740291	3300010403	Terrestrial Soil	MAPSPASGAPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKDA*
Ga0137425_11791081	3300011422	Soil	MAPTPASGAADSEAARLLRELEAAEAYEQKLRQVIVSVKNELAGGHTERALSMLNEALNDIDAATDVVVPHKDG*
Ga0164300_101981362	3300012951	Soil	MDARREPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0157374_110392632	3300013296	Miscanthus Rhizosphere	MAPTPASGAEDSESARLLRELEAAEAYEQKLRQIIVSVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDG*
Ga0157378_114432191	3300013297	Miscanthus Rhizosphere	MTAMDARREPESEVAHLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0157378_115224422	3300013297	Miscanthus Rhizosphere	FEKQEIPMAPTPVAGPQESESARLLRELEAAEAYEQKLRQVIVSVKNELAAGHQERALSMLNEALNDIDSQTDVVVPHRDR*
Ga0163162_107141401	3300013306	Switchgrass Rhizosphere	MALTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHPDR*
Ga0163162_121594982	3300013306	Switchgrass Rhizosphere	MAKDTDMMDARSDPESEGARLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHRDA*
Ga0163162_133222511	3300013306	Switchgrass Rhizosphere	MPAKPEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNYIDSATDVVVP
Ga0157375_116090332	3300013308	Miscanthus Rhizosphere	MDNRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0157375_121271792	3300013308	Miscanthus Rhizosphere	MTTMDAHGDPESESARLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0075340_10967271	3300014304	Natural And Restored Wetlands	MAMPTQRAPPTPESEVARLTRELEAAEAYEQYLRQTILVIKDQLAAGHAERALSMLNEALNTID
Ga0075352_12676242	3300014324	Natural And Restored Wetlands	MPKNDTREAPESEADRLLRELEAAEAYEQHLRQVIVDVRETLAAGRTERALSMLNEALNDIDAATDVVVPHKD*
Ga0163163_100227513	3300014325	Switchgrass Rhizosphere	MAPTPASDAEDSESARLLRELEAAEAYEQKLRQVIVSVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDG*
Ga0157376_121150011	3300014969	Miscanthus Rhizosphere	ESARLLRELEAAEAYEQKLRQVIVSVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDG*
Ga0157376_130575971	3300014969	Miscanthus Rhizosphere	MDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPH
Ga0173478_100481121	3300015201	Soil	SPMAAMDNRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSATDVVVPHKDV*
Ga0132258_103618083	3300015371	Arabidopsis Rhizosphere	MPAKPAPRADESELSRLVRELEAAEAYEQKLRQTIVTVRDQLAAGHTERALSMLNEALNYIDSATDVVVPHQDP*
Ga0132258_103832263	3300015371	Arabidopsis Rhizosphere	MPAEPAPPAGEGEVARLVRELEAAEAYEQRLRQTIVAVRDQLAAGHAERALSMLNEALNYIDSATDVVVPHKDP*
Ga0132258_107535772	3300015371	Arabidopsis Rhizosphere	MAATDTRRDPESEVTRLLRELEEAEIYTQKLRQTIVGVRDELAAGHVERSLSMLNAALNDIDSATDVVVPHRDA*
Ga0132258_108227041	3300015371	Arabidopsis Rhizosphere	MDARSEPESEAARLLRELEAAELYEQQLRQTIVSVRDELAAGHTERALSMLNAALNDIDSATDVVVPHKHA*
Ga0132258_117000842	3300015371	Arabidopsis Rhizosphere	MAAKDARGEPESEVSRLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKNA*
Ga0132258_134057662	3300015371	Arabidopsis Rhizosphere	MAPTPASGAEDSESARLLHELEAAEAYEQKLRQVIISVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDG*
Ga0132256_1006015892	3300015372	Arabidopsis Rhizosphere	MDARSEPESELARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNEALNHIDAATDVVVPHKDA*
Ga0132256_1025803632	3300015372	Arabidopsis Rhizosphere	MAATDTRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELAAGHVERSLSMLNAALNDIDSATDVVVPHRDA*
Ga0132257_1006555122	3300015373	Arabidopsis Rhizosphere	MDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKDA*
Ga0132257_1008544841	3300015373	Arabidopsis Rhizosphere	MPAKPAPPAGEGDVARLVRELEAAEAYEQRLRQTIVAVRDQLAAGHAERALSMLNEALTYIDSATDVVVPHKDP*
Ga0132255_1018280181	3300015374	Arabidopsis Rhizosphere	RRMTSMDARSEPESEAARLLRELEAAELYEQQLRQTIVSVRDELAAGHTERALSMLNAALNDIDSATDVVVPHKHA*
Ga0132255_1030291791	3300015374	Arabidopsis Rhizosphere	MAATDTRRDPDSEFTRLLRELEEAEIYTQKLRQTIVGVRDELAAGHVERSLSMLNAALNDIDSATDVVVPHRDA*
Ga0132255_1057600401	3300015374	Arabidopsis Rhizosphere	MDARSEPESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDAATDVVVPHRDA*
Ga0184624_101816702	3300018073	Groundwater Sediment	MAPSPASGGPDSEAARLLRELEAAEAYEQKLRQIIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKGA
Ga0190274_100309533	3300018476	Soil	MPAKPAPRAAESEVTRLIRELEAAEAYEQKLRQTIVTVRDQLAAGHTERALSMLNEALNYIDSATDVVVPHKDP
Ga0190274_109747112	3300018476	Soil	MPPTPASKAPEGEAARLLRELEAAEAYEQKLRQVIVSVKEELAAGHTERALSMLNEALNDIDSATDVVVPHKHG
Ga0190274_127496752	3300018476	Soil	MATPAAGAPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHRDG
Ga0210380_102745512	3300021082	Groundwater Sediment	RRMPKAPESEADRLLRELEAAEAYEQRLRQVIVGVRDQLAAGHTERALSMLNEALNDIDSATDVVVPHKDR
Ga0210380_104311511	3300021082	Groundwater Sediment	MAPSPASGGPDSEAARLLRELEAAEAYEQKLRQIIVSVKNELSSGHTERALSMLNEALNDIDSA
Ga0210380_105474332	3300021082	Groundwater Sediment	MADESELQLQEAEIARLVRELELAEAYEQKLRQLVVDVREQITAGHTQQALSMLNAALNDIDSQTDVVVPHERR
Ga0207697_100150942	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MALTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR
Ga0210131_11027001	3300025551	Natural And Restored Wetlands	MTAMRGPPVPESEGARLVRELEAAEAYEQHLRQVIVGVRDQLAAGHVERALSMLNEALNYIDSATDVVVPHADT
Ga0207682_102195581	3300025893	Miscanthus Rhizosphere	MAAIDGRTDPELEVGRLIRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDR
Ga0207682_102721561	3300025893	Miscanthus Rhizosphere	MPAKPEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNYIDSATDVVVPPKGP
Ga0207643_101394302	3300025908	Miscanthus Rhizosphere	MAAMDNRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSATDVVVPHKDA
Ga0207643_103557952	3300025908	Miscanthus Rhizosphere	LTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR
Ga0207681_103474582	3300025923	Switchgrass Rhizosphere	MATPAAGAPDSEAARLLRELEAAEAYEQKLRQIIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKGA
Ga0207650_101184782	3300025925	Switchgrass Rhizosphere	MAPTPASGAEDSESARLLRELEAAEAYEQKLRQVIVSVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDG
Ga0207650_115442572	3300025925	Switchgrass Rhizosphere	MPAKPEPRAAESEATRLLRELEAAEAYEQQLRQTIVAVRDQLAAGHTERALSMLNEALNYIDSATDVVVPHKGP
Ga0207659_101184492	3300025926	Miscanthus Rhizosphere	MAAMDNRRDPESEVARLLRELEEAEIYTQKLRQTIVGVRDELTAGHVERALSMLNAALNDIDSATDVVVPHKDV
Ga0207644_100199762	3300025931	Switchgrass Rhizosphere	MALTPASGAPESESARLLRELEAAEAYEQKLRQIIVSVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHPDR
Ga0207644_106270534	3300025931	Switchgrass Rhizosphere	MTTMDARGDPESESARLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDA
Ga0207670_103617421	3300025936	Switchgrass Rhizosphere	DPESEIARLLRELEEAEIYTQKLRQTIVSVRDALTQGHVERALSMLNAALNDIDSATDVVVPHKDA
Ga0207670_119351972	3300025936	Switchgrass Rhizosphere	MATPAAGAPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKDG
Ga0207691_103022282	3300025940	Miscanthus Rhizosphere	MAPSPASGGPDSEAARLLRELEAAEAYEQKLRQVIVSVKNELASGHTERALSMLNEALNDIDSATDVVVPHKGA
Ga0207679_103464972	3300025945	Corn Rhizosphere	MALTPASGAPESESARLLRELEAAEAYEQKLRQVIVSVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDG
Ga0207651_120125681	3300025960	Switchgrass Rhizosphere	MTTMDARGDPESESARLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHRDA
Ga0207651_120265892	3300025960	Switchgrass Rhizosphere	ESARLLRELEAAEAYEQKLRQIIVSVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHPDR
Ga0207668_101951041	3300025972	Switchgrass Rhizosphere	GRTDPELEVGRLIRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDR
Ga0207668_108537581	3300025972	Switchgrass Rhizosphere	CRKIKRSEKKKGPMPPTPPAGAPDNEAARLLRELEAAEAYEQKLRQVIVSVKNELAAGHTERALSMLNEALNDIDSATDVVVPHKDG
Ga0207658_102172981	3300025986	Switchgrass Rhizosphere	SHVMTTMDARGDPESESARLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKGA
Ga0207639_118917912	3300026041	Corn Rhizosphere	MALTPASEALESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRD
Ga0207648_102230303	3300026089	Miscanthus Rhizosphere	MTAMDARREPESEVAHLLRELEAAELYEQQLRQTIVSVRDELAAGRVERALSMLNAALNDIDSATDVVVPHKDR
Ga0207683_105608242	3300026121	Miscanthus Rhizosphere	MAPTPAAGPQESESARLLRELEAAEAYEQKLRQVIVTVKNELAAGHHERALSMLNEALNDIDSQTDVVVPHRDR
Ga0268265_101400542	3300028380	Switchgrass Rhizosphere	MAAMDPRRDPESEIARLLRELEEAEIYTQKLRQTIVSVRDALTQGHVERALSMLNAALNDIDSATDVVVPHKDA
Ga0268264_100309702	3300028381	Switchgrass Rhizosphere	MALTPASESESARLLRELEAAEVYEQKLRQVIVTVKNELAAGHHERALSMLNEALNEIDSQTDVVVPHRDR
Ga0307498_104625081	3300031170	Soil	DRGEIARLCKELEEAELYEQRLRGLVVAVRDELAAGNVARALSMCNEMLNEIDSATDVVVPERDASAAAVPKVR
Ga0307469_122821052	3300031720	Hardwood Forest Soil	MTADERLQAAESENARLVAELEEAELYEQKLRQLIVEVRDELAAGRIEQALSMLNTALNDIDSATDVVVPPHRTK
Ga0307468_1000302312	3300031740	Hardwood Forest Soil	MATKDMRREPESEVARLLRELESAEIYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKDA
Ga0307470_111958431	3300032174	Hardwood Forest Soil	MAAMDTRRDPESEVTRLLRELEEAEIYTQKLRQTIVGVRDQLAAGHVERALSMLNAALNDIDSATDVVVPHKDA
Ga0307471_1028323022	3300032180	Hardwood Forest Soil	MAATNTRDEPDSEVARLIRELEAAELYEQQLRQTIVNVREELSAGHVERALSMLNAALNEIDAATDVVVPHKGA
Ga0307472_1024005352	3300032205	Hardwood Forest Soil	ESEVARLLRELEAAELYEQQLRQTIVSVRDELAAGHVERALSMLNAALNDIDSATDVVVPHKDA
Ga0335070_100939991	3300032829	Soil	MTAQPSDADAEIARLVRELEDAEAYEQKLRQTIVEVRDRLAAGNTAQALSLLNQALNDIDSATDVVAARRTSA
Ga0335084_103036192	3300033004	Soil	MPANDTREAPESEAARLLRELEAAEAYEQHLRQVIVDVREALAAGRAERALSMLNEALNDIDAATDVVVPQKDR
Ga0326726_118751301	3300033433	Peat Soil	MTAMRAPPVPESEAARLVRELEAAEAYEQNLRQVIVGVRDQLAAGHAERALSMLNEALNYIDSATDVVVPHANK
Ga0364945_0051856_398_622	3300034115	Sediment	MPAKPARRATESEVTRLIRELEAAEAYEQKLRQTIVTVRDQLAAGHTERALSMLNEALNYIDSATDVVVPHKDP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068949

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences