NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F068920

Metagenome / Metatranscriptome Family F068920

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F068920
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 38 residues
Representative Sequence CNKYARDAEERPLPKEETTPPVTNIYRAMELSYSE
Number of Associated Samples 107
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 96.77 %
% of genes from short scaffolds (< 2000 bps) 90.32 %
Associated GOLD sequencing projects 105
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (92.742 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(20.968 % of family members)
Environment Ontology (ENVO) Unclassified
(75.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.065 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.92%    β-sheet: 0.00%    Coil/Unstructured: 65.08%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.20
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF00121TIM 48.39
PF03840SecG 43.55
PF13624SurA_N_3 3.23
PF04715Anth_synt_I_N 1.61
PF00133tRNA-synt_1 0.81
PF06418CTP_synth_N 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG0149Triosephosphate isomeraseCarbohydrate transport and metabolism [G] 48.39
COG1314Protein translocase subunit SecGIntracellular trafficking, secretion, and vesicular transport [U] 43.55
COG0147Anthranilate/para-aminobenzoate synthases component IAmino acid transport and metabolism [E] 3.23
COG0060Isoleucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.81
COG0143Methionyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.81
COG0495Leucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.81
COG0504CTP synthase (UTP-ammonia lyase)Nucleotide transport and metabolism [F] 0.81
COG0525Valyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.81

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.74 %
UnclassifiedrootN/A7.26 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000168|LPjun09P1210mDRAFT_c1004636All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1221Open in IMG/M
3300000257|LP_F_10_SI03_100DRAFT_1006436All Organisms → cellular organisms → Bacteria2715Open in IMG/M
3300001832|ACM6_1026428All Organisms → cellular organisms → Bacteria → Proteobacteria569Open in IMG/M
3300001846|ACM22_1051386All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → alpha proteobacterium SCGC AAA536-G102832Open in IMG/M
3300001941|GOS2219_1031465All Organisms → cellular organisms → Bacteria → Proteobacteria1002Open in IMG/M
3300001947|GOS2218_1000422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1301Open in IMG/M
3300001962|GOS2239_1009535All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2973Open in IMG/M
3300003596|JGI26255J51710_1004514All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique4109Open in IMG/M
3300006339|Ga0068481_1518964All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter875Open in IMG/M
3300006902|Ga0066372_10362508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter831Open in IMG/M
3300007074|Ga0075110_1119424All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300007229|Ga0075468_10248162All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211505Open in IMG/M
3300007972|Ga0105745_1206321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter620Open in IMG/M
3300008097|Ga0111541_10425262All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300008961|Ga0102887_1235470All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter554Open in IMG/M
3300008996|Ga0102831_1010838All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique3211Open in IMG/M
3300009071|Ga0115566_10285148All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter978Open in IMG/M
3300009071|Ga0115566_10501732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter688Open in IMG/M
3300009071|Ga0115566_10674981All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter574Open in IMG/M
3300009172|Ga0114995_10349654All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter812Open in IMG/M
3300009193|Ga0115551_1446098Not Available554Open in IMG/M
3300009420|Ga0114994_10971021All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria550Open in IMG/M
3300009481|Ga0114932_10208169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1189Open in IMG/M
3300009497|Ga0115569_10404743All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria588Open in IMG/M
3300009498|Ga0115568_10326766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae674Open in IMG/M
3300009505|Ga0115564_10166586All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1171Open in IMG/M
3300009550|Ga0115013_10828040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria642Open in IMG/M
3300009703|Ga0114933_10203199Not Available1342Open in IMG/M
3300010883|Ga0133547_10720370All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1973Open in IMG/M
3300012415|Ga0138263_1448721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211502Open in IMG/M
3300012919|Ga0160422_10191784All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1235Open in IMG/M
3300012919|Ga0160422_10824621All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter596Open in IMG/M
3300012920|Ga0160423_10268408All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1178Open in IMG/M
3300012928|Ga0163110_10347392All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1098Open in IMG/M
3300012928|Ga0163110_11350048Not Available576Open in IMG/M
3300012936|Ga0163109_10853089All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria666Open in IMG/M
3300012936|Ga0163109_11386178All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211512Open in IMG/M
3300012954|Ga0163111_10382826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1272Open in IMG/M
3300012954|Ga0163111_10506610All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1114Open in IMG/M
3300012954|Ga0163111_12585894All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique518Open in IMG/M
3300014818|Ga0134300_1077734All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique568Open in IMG/M
3300017709|Ga0181387_1110361All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique565Open in IMG/M
3300017731|Ga0181416_1091243All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique725Open in IMG/M
3300017738|Ga0181428_1059583All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria890Open in IMG/M
3300017765|Ga0181413_1041282All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1438Open in IMG/M
3300017956|Ga0181580_10200326All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1402Open in IMG/M
3300017969|Ga0181585_10717856All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique652Open in IMG/M
3300018039|Ga0181579_10179846All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1256Open in IMG/M
3300018421|Ga0181592_10886718All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique581Open in IMG/M
3300018876|Ga0181564_10670594All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter547Open in IMG/M
3300019459|Ga0181562_10547401All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211546Open in IMG/M
3300020174|Ga0181603_10053277All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter2075Open in IMG/M
3300020194|Ga0181597_10437702All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211539Open in IMG/M
3300020238|Ga0211492_1054730All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria735Open in IMG/M
3300020289|Ga0211621_1025341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria906Open in IMG/M
3300020310|Ga0211515_1048063All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium805Open in IMG/M
3300020341|Ga0211592_1091925All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria630Open in IMG/M
3300020382|Ga0211686_10022362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2600Open in IMG/M
3300020382|Ga0211686_10337565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique615Open in IMG/M
3300020394|Ga0211497_10093615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1223Open in IMG/M
3300020414|Ga0211523_10429152All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211532Open in IMG/M
3300020418|Ga0211557_10096064All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1471Open in IMG/M
3300020420|Ga0211580_10285736All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter678Open in IMG/M
3300020439|Ga0211558_10430153All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique608Open in IMG/M
3300020446|Ga0211574_10138883All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1063Open in IMG/M
3300020450|Ga0211641_10605193All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211515Open in IMG/M
3300020454|Ga0211548_10137287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1177Open in IMG/M
3300020462|Ga0211546_10183103All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1038Open in IMG/M
3300020462|Ga0211546_10311312All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria788Open in IMG/M
3300020463|Ga0211676_10133615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1584Open in IMG/M
3300020463|Ga0211676_10175527All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1321Open in IMG/M
3300020463|Ga0211676_10198901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1214Open in IMG/M
3300020468|Ga0211475_10297062Not Available794Open in IMG/M
3300020474|Ga0211547_10114396All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1411Open in IMG/M
3300020474|Ga0211547_10434530All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique660Open in IMG/M
3300020474|Ga0211547_10436670All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique658Open in IMG/M
3300020474|Ga0211547_10548013All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria576Open in IMG/M
3300020475|Ga0211541_10227253All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique915Open in IMG/M
3300020810|Ga0181598_1342320All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique518Open in IMG/M
3300021371|Ga0213863_10309574All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria659Open in IMG/M
3300021960|Ga0222715_10386372All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique769Open in IMG/M
(restricted) 3300023109|Ga0233432_10393132All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter609Open in IMG/M
3300023119|Ga0255762_10124796Not Available1508Open in IMG/M
3300023176|Ga0255772_10274891All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter907Open in IMG/M
3300023706|Ga0232123_1071342All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter669Open in IMG/M
(restricted) 3300024260|Ga0233441_1138402All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter784Open in IMG/M
3300025513|Ga0208413_1145076All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique593Open in IMG/M
3300025722|Ga0209660_1186815All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter668Open in IMG/M
3300025770|Ga0209362_1211729All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter645Open in IMG/M
3300025830|Ga0209832_1012155All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter3819Open in IMG/M
3300025881|Ga0209309_10029320All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique3555Open in IMG/M
3300025894|Ga0209335_10142758All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1174Open in IMG/M
3300026210|Ga0208642_1006660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. RS403799Open in IMG/M
3300026210|Ga0208642_1077433All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. RS40736Open in IMG/M
3300026254|Ga0208522_1107381All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter748Open in IMG/M
3300026267|Ga0208278_1032664Not Available1339Open in IMG/M
3300027191|Ga0208021_1033346All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique779Open in IMG/M
3300027686|Ga0209071_1231612All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211511Open in IMG/M
3300027687|Ga0209710_1123154All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique982Open in IMG/M
3300027752|Ga0209192_10171156All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique845Open in IMG/M
3300027779|Ga0209709_10136730All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1223Open in IMG/M
3300027791|Ga0209830_10432291All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique553Open in IMG/M
3300027813|Ga0209090_10137410All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1299Open in IMG/M
3300027838|Ga0209089_10731523All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211504Open in IMG/M
3300028192|Ga0257107_1058033Not Available1188Open in IMG/M
3300028196|Ga0257114_1137271All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique955Open in IMG/M
3300028535|Ga0257111_1095471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter942Open in IMG/M
3300031594|Ga0302131_1098949All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1021Open in IMG/M
3300031598|Ga0308019_10377765All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter514Open in IMG/M
3300031599|Ga0308007_10149117All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique836Open in IMG/M
3300031599|Ga0308007_10210176All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique673Open in IMG/M
3300031630|Ga0308004_10214250All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique777Open in IMG/M
3300031630|Ga0308004_10376728All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211530Open in IMG/M
3300031659|Ga0307986_10128190All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1200Open in IMG/M
3300031695|Ga0308016_10340591All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211542Open in IMG/M
3300031702|Ga0307998_1210561All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique652Open in IMG/M
3300031775|Ga0315326_10537611All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter748Open in IMG/M
3300031785|Ga0310343_10334009All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. RS401082Open in IMG/M
3300032006|Ga0310344_10578482All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. RS40962Open in IMG/M
3300032011|Ga0315316_11292901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter582Open in IMG/M
3300032073|Ga0315315_11033546All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique735Open in IMG/M
3300032820|Ga0310342_102841181All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter578Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine20.97%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine14.52%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh9.68%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine7.26%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater6.45%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.45%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.03%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.03%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.42%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine2.42%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.42%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.42%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.61%
Marine PlanktonEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton1.61%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater1.61%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.61%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface1.61%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake1.61%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.81%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.81%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.81%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.81%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.81%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.81%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.81%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.81%
Polar MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine0.81%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000168Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 10mEnvironmentalOpen in IMG/M
3300000257Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100EnvironmentalOpen in IMG/M
3300001832Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM6, ROCA_DNA131_0.2um_27bEnvironmentalOpen in IMG/M
3300001846Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM22, ROCA_DNA119_0.2um_25bEnvironmentalOpen in IMG/M
3300001941Marine microbial communities from Browns Bank, Gulf of Maine - GS003EnvironmentalOpen in IMG/M
3300001947Marine microbial communities from the Gulf of Maine, Canada - GS002EnvironmentalOpen in IMG/M
3300001962Marine microbial communities from Cocos Island, Costa Rica - GS023EnvironmentalOpen in IMG/M
3300003596Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNAEnvironmentalOpen in IMG/M
3300006339Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_3_0500mEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300007074Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8EnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007972Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0umEnvironmentalOpen in IMG/M
3300008097Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_DCM_ad_131m_LV_B (version 2)EnvironmentalOpen in IMG/M
3300008961Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02EnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300009550Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 MetagenomeEnvironmentalOpen in IMG/M
3300009703Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012415Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA15.ICE_1m.20151115 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012919Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300014818Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubationEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017969Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018039Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018876Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020174Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020194Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020238Marine microbial communities from Tara Oceans - TARA_B000000475 (ERX556004-ERR599068)EnvironmentalOpen in IMG/M
3300020289Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556122-ERR599019)EnvironmentalOpen in IMG/M
3300020310Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX556067-ERR598950)EnvironmentalOpen in IMG/M
3300020341Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555908-ERR599066)EnvironmentalOpen in IMG/M
3300020382Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)EnvironmentalOpen in IMG/M
3300020394Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)EnvironmentalOpen in IMG/M
3300020414Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)EnvironmentalOpen in IMG/M
3300020418Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)EnvironmentalOpen in IMG/M
3300020420Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300020446Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)EnvironmentalOpen in IMG/M
3300020450Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)EnvironmentalOpen in IMG/M
3300020454Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)EnvironmentalOpen in IMG/M
3300020462Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)EnvironmentalOpen in IMG/M
3300020463Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)EnvironmentalOpen in IMG/M
3300020468Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)EnvironmentalOpen in IMG/M
3300020474Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)EnvironmentalOpen in IMG/M
3300020475Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)EnvironmentalOpen in IMG/M
3300020810Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023119Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaGEnvironmentalOpen in IMG/M
3300023176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaGEnvironmentalOpen in IMG/M
3300023706Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504AT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024260 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_135_MGEnvironmentalOpen in IMG/M
3300025222Marine microbial communities from the Deep Pacific Ocean - MP2253 (SPAdes)EnvironmentalOpen in IMG/M
3300025513Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD (SPAdes)EnvironmentalOpen in IMG/M
3300025722Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025770Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025830Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)EnvironmentalOpen in IMG/M
3300025881Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)EnvironmentalOpen in IMG/M
3300025894Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)EnvironmentalOpen in IMG/M
3300026210Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251 (SPAdes)EnvironmentalOpen in IMG/M
3300026254Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)EnvironmentalOpen in IMG/M
3300026267Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV259 (SPAdes)EnvironmentalOpen in IMG/M
3300027191Estuarine microbial communities from the Columbia River estuary - metaG S.737 (SPAdes)EnvironmentalOpen in IMG/M
3300027686Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300027752Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300028192Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_500mEnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300031594Marine microbial communities from Western Arctic Ocean, Canada - CB9_20mEnvironmentalOpen in IMG/M
3300031598Marine microbial communities from water near the shore, Antarctic Ocean - #284EnvironmentalOpen in IMG/M
3300031599Marine microbial communities from water near the shore, Antarctic Ocean - #71EnvironmentalOpen in IMG/M
3300031630Marine microbial communities from water near the shore, Antarctic Ocean - #38EnvironmentalOpen in IMG/M
3300031659Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82EnvironmentalOpen in IMG/M
3300031695Marine microbial communities from water near the shore, Antarctic Ocean - #233EnvironmentalOpen in IMG/M
3300031702Marine microbial communities from David Island wharf, Antarctic Ocean - #37EnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M
3300031785Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MGEnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LPjun09P1210mDRAFT_100463613300000168MarineDCNKYAREAEERPFPNEETTPPVTKIYRAMVLSYSD*
LP_F_10_SI03_100DRAFT_100643643300000257MarineCNKYANEAEERPLPREETTPPVTNIYRAMELSYSE*
ACM6_102642833300001832Marine PlanktonYASDADDNPFPSDDTTPPVTNIYRAMELSYRLIILK*
ACM22_105138653300001846Marine PlanktonSKYASDAEDRPLPSDETTPPVTNIYRAMEVSYRLKI*
GOS2219_103146533300001941MarineSNFLKRTLKPLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD*
GOS2218_100042233300001947MarineCNKYARDAEERPFPNEETTPPVTKINRAMVLSYSD*
GOS2239_100953553300001962MarineFNKYASDAEDNPFPSDETTPPVTKIYRAMEVSYRLKT*
JGI26255J51710_100451413300003596MarineGSNFLKRTLKPLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD*
Ga0068481_151896413300006339MarineIEEDMLEAEESPLPNDETTPPVTNIYRAMELLYKHK*
Ga0066372_1036250813300006902MarineANDAEERPFPKDETTPPVTNIYRAMELTYNHLFLN*
Ga0075110_111942413300007074Saline LakeGSSFLKRTLKPLDCSKYAREAEERPFPKDETTPPVTKINRAMVLSYSD*
Ga0075468_1024816223300007229AqueousFLKRTLKPLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD*
Ga0105745_120632133300007972Estuary WaterDCNRYARDAEERPFPNEETTPPVTKINRAMVLSYSD*
Ga0111541_1042526233300008097MarineSDADDKPFPSDDTTPPVTKIYRAMELCYSELFLK*
Ga0102887_123547033300008961EstuarineLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD*
Ga0102831_101083813300008996EstuarineDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD*
Ga0115566_1028514833300009071Pelagic MarineNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD*
Ga0115566_1050173213300009071Pelagic MarineYANDADESPFPKDETTPPVTNIYRAMELPYSDIYLN*
Ga0115566_1067498133300009071Pelagic MarineKRTLKPLDCSKYASEAEDKPFPKEDTTPPVTKINRAMELSYSDYLIK*
Ga0114995_1034965413300009172MarineKPLDCNKYAREAEERPFPKDETTPPVTKINRAMVISYSD*
Ga0115551_144609833300009193Pelagic MarineTLKPLDCNRYAKEAEERPFPREETTPPVTNIYRAMELPYNDLLLD*
Ga0114994_1097102133300009420MarineRYANEAEESPLPKDETTPPVTKIYRAMELSYNDK*
Ga0114932_1020816933300009481Deep SubsurfaceNKYANDADDNPLPNDETTPPVTNIYRAMELLYNHKY*
Ga0115569_1040474313300009497Pelagic MarinePLDCKRYANEADERPLPNDDTTPPVTNIYRAMELSYSDK*
Ga0115568_1032676633300009498Pelagic MarineCNKYAKEAEESPFPNDETTPPVTNIYRAMVLSYSDKLSD*
Ga0115564_1016658633300009505Pelagic MarinePLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD*
Ga0115013_1082804033300009550MarineLYPLDWSKYAKDADERPLPKDETTPPVTNIYRAMEESYSE*
Ga0114933_1020319943300009703Deep SubsurfaceNKYARDADDKPLPSEETTPPVTNIYRAMELLYSDKLLK*
Ga0133547_1072037013300010883MarineKPLSCNKAASEADDSPFPKDDTTPPVTNIYRAME*
Ga0138263_144872113300012415Polar MarineLDCRKYAREADERPFPNEETTPPVTKINRAMVLSYND*
Ga0160422_1019178433300012919SeawaterFNKYASEADESPFPKDETTPPVTNIYRAMEVSYN*
Ga0160422_1082462133300012919SeawaterNKYARDAEERPLPKDDTTPPVTNIYRAMEVSYSE*
Ga0160423_1026840813300012920Surface SeawaterSKYARDAEERPLPRDETTPPVTKIYRAMEVSYSE*
Ga0163110_1034739233300012928Surface SeawaterNFLSLTLYPLDCNRYASDAEERPFPSEETTPPVTKIYRAMELSYSE*
Ga0163110_1135004813300012928Surface SeawaterNCNNEANDAEVNPFPKDETTPPVTKIYRAMELCYSL*
Ga0163109_1085308933300012936Surface SeawaterFNKYASEAEERPLPNDETTPPVTKINRAMEVSYSE*
Ga0163109_1138617833300012936Surface SeawaterKYPSEADDNPFPSEETTPPVTKMNRAMELCYSSY*
Ga0163111_1038282633300012954Surface SeawaterNEADDKPFPKDETTPPVTNMYRAMEDCYTLDIYY*
Ga0163111_1050661033300012954Surface SeawaterCNKYARDAEERPLPKEETTPPVTNIYRAMEVSYSE*
Ga0163111_1258589433300012954Surface SeawaterCNKYAKDAEDRPLPREETTPPVTNIYRAMEVSYSE*
Ga0134300_107773413300014818MarineRSEGEADDNPLPKDETTPPVTNIYRAMEVCYTLYI*
Ga0181387_111036133300017709SeawaterARDAEERPLPKEETTPPVTNIYRAMELSYSELRMN
Ga0181383_110191633300017720SeawaterLTLKPLDCKRYASEAEDKPLPNDETTPPVTNIYRAMELSYSE
Ga0181416_109124313300017731SeawaterRDCSKYASDADDRPLPREETTPPVTNIYRAMELSYSE
Ga0181428_105958313300017738SeawaterKYAKEADDNPLPNDETTPPVTNIYRAMELSYSELKKN
Ga0181413_104128243300017765SeawaterRYANDADDNPLPKDETTPPVTNIYRAMEVCYTLYI
Ga0181580_1020032643300017956Salt MarshLDCNKYARDAEERPLPREETTPPVTKIYRAMEVSYSE
Ga0181585_1071785633300017969Salt MarshDCRRYASDADDRPFPSDETTPPVTNIYRAMELSYSQ
Ga0181579_1017984613300018039Salt MarshTLYPRDCRRYASDADDRPFPSDETTPPVTNIYRAMALSYS
Ga0181592_1088671813300018421Salt MarshTLYPLDCNKYANDAEERPLPREETTPPVTNIYRAMEVSYSE
Ga0181564_1067059413300018876Salt MarshPLDCNKYARDAEERPLPNDETTPPVTNINRAMELSYSE
Ga0181562_1054740113300019459Salt MarshYANDAEDKPLPKDETTPPVTNINRAMEVPYSGKSYK
Ga0181603_1005327743300020174Salt MarshASDAEERPLPREETTPPVTKIYRAMELPYSDNYSN
Ga0181597_1043770213300020194Salt MarshGSNFLNLTLYPLDCNKYARDAEERPLPKEETTPPVTNIYRAMELSYSE
Ga0211492_105473033300020238MarineLDCNRYASEAEERPLPKDETTPPVTNINRAMDLFYILL
Ga0211621_102534133300020289MarineCNKYASEAEERPLPKDETTPPVTNINRAMELSYRP
Ga0211515_104806313300020310MarineCNKYARDADDKPLPSDETTPPVTKIYRAMELSYSG
Ga0211592_109192513300020341MarineCNKYAREAEERPLPRDETTPPVTNINRAMELSYSE
Ga0211686_1002236243300020382MarineRRTLKPLDCSKYAREAEERPFPKEETTPPVTNINRAMELVYNS
Ga0211686_1033756533300020382MarineLNLTLKPLDCSKYAREAEERPFPREETTPPVTKIYRAMELSYSDKFMN
Ga0211497_1009361513300020394MarineDLNKYPNDADDKPLPSDETTPPVTNIYRAMELCYSQ
Ga0211523_1042915233300020414MarineDCSKYASDAEDRPLPRDETTPPVTNINRAMELPYSDIF
Ga0211557_1009606413300020418MarineKRYAREAEDKPLPNDETTPPVTNIYRAMELLYIDT
Ga0211580_1028573633300020420MarinePCDFNKYAKEAEDNPLPSDETTPPVTNIYRAMELSYSE
Ga0211558_1043015313300020439MarineLYPLDCNKYANDADDNPFPKDETTPPVTNMYRAMEVCYTLKLC
Ga0211574_1013888313300020446MarineFLNLTLYPLDCNKYAKDAEDKPLPKDETTPPVTNIYRAMEVSYSA
Ga0211641_1060519313300020450MarineLDCSKYAKEAEERPFPNDETTPPVTNINRAMELSYSE
Ga0211548_1013728733300020454MarineDFNRYASDADDNPLPREDTTPPVTKMNRAMELSYSSYL
Ga0211546_1018310313300020462MarineANEAEDRPLPKDETTPPVTKINRAMELSYSEKKSN
Ga0211546_1031131213300020462MarinePWDFNRYASDADDNPLPREDTTPPVTNIYRAMELSYRPKT
Ga0211676_1013361543300020463MarineDCNKYARDAEESPFPKEETTPPVTNIYRAMEVSYSE
Ga0211676_1017552733300020463MarineDFSKYANDAEDKPFPSDETTPPVTKINRAMEVTYSE
Ga0211676_1019890113300020463MarineLYPLDCNKYASDAEDRPLPKEETTPPVTNIYRAMELSYSE
Ga0211475_1029706233300020468MarineARDADDKPFPSEDTTPPVTNIYRAMESCYSELFLK
Ga0211547_1011439613300020474MarinePLDWSKYASDAEDSPLPNEETTPPVTKIKRAMELSYSE
Ga0211547_1043453013300020474MarineCNKYASDADDNPLPKDETTPPVTKMYRAMEVCYTS
Ga0211547_1043667013300020474MarinePLDCNKYASEADDNPFPKDETTPPVTKMYRAMEVCYTLFLN
Ga0211547_1054801313300020474MarineNFLNLTLYPLDWRRYARDAEESPLPNDETTPPVTKINRAMDLSYSE
Ga0211541_1022725333300020475MarineKPLDCKRYANEADERPFPKDETTPPVTNIYRAMELCYTQ
Ga0181598_134232033300020810Salt MarshCNKYARDAEERPLPKEETTPPVTNIYRAMELSYSE
Ga0213863_1030957413300021371SeawaterLSKYASEAEERPLPKDETTPPVTKIYRAMEVSYSEKKSN
Ga0222715_1038637233300021960Estuarine WaterCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD
(restricted) Ga0233432_1039313233300023109SeawaterLDCSRYAKEAEERPLPKDETTPPVTNIYRAMELSYID
Ga0255762_1012479643300023119Salt MarshDCKRYASDAEDNPFPSDDTTPPVTKIYRAMELRYSD
Ga0255772_1027489113300023176Salt MarshDCRRYASDADDRPFPRDETTPPVTNIYRAMELSYS
Ga0232123_107134213300023706Salt MarshASEAEERPLPREETTPPVTKIYRAMELPYSDKYRN
(restricted) Ga0233441_113840213300024260SeawaterLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0208831_101499833300025222Deep OceanLNCNKDANEAEVRPFPNDETTPPVTNIYRAMEVQYSKF
Ga0208413_114507633300025513Saline LakeLDCSKYAREAEERPFPKEETTPPVTKIYRAMVLSYSD
Ga0209660_118681533300025722MarineSNFLKRTLKPLDCNKYARDAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0209362_121172913300025770MarineLKPLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0209832_101215553300025830Pelagic MarineNKYANEAEERPFPRDETTPPVTNIYRAMELSYSDK
Ga0209309_1002932013300025881Pelagic MarineDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0209335_1014275833300025894Pelagic MarineRSKYANDADDSPLPKEETTPPVTNIYRAMELSYSE
Ga0208642_100666053300026210MarineNKYPNDADDKPLPSEETTPPVTNIYRAMELCYNHII
Ga0208642_107743313300026210MarineNKYPNDADDKPLPSEETTPPVTNIYRAMELCYSYII
Ga0208522_110738133300026254MarineKPLDFNKYANEADDKPLPNDETTPPVTNIYRAMELLYNHKY
Ga0208278_103266413300026267MarineNCNNAAKDAEDNPFPRDETTPPVTNIYRAMEDHYKQ
Ga0208021_103334613300027191EstuarineDCNKYARDAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0209071_123161223300027686MarineKRTLKPLDCSKYAREAEERPFPSEETTPPVTKINRAMVLSYND
Ga0209710_112315413300027687MarinePLDCSRYAREAEERPFPNEETTPPVTKINRAMVLSYND
Ga0209192_1017115633300027752MarineLRRTLKPLDCSKYAREAEERPFPKEETTPPVTNINRAMELVYNG
Ga0209709_1013673013300027779MarineYANDAEERPLPKDETTPPVTNIYRAMELSYSEKKLN
Ga0209830_1043229113300027791MarinePLDCSKYAREAEERPFPKEETTPPVTKIYRAMELSYSD
Ga0209090_1013741013300027813MarineRTLKPLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0209089_1073152323300027838MarineFLRRTLKPLDWSKYASDADERPFPKEETTPPVTNIYRAMELLYSDIFLN
Ga0257107_105803313300028192MarineCDFKRYASDADDNPFPSDETTPPVTKIYRAMELFYSH
Ga0257114_113727113300028196MarineFLKRTLKPLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0257111_109547133300028535MarineDFNKYASDADDNPLPSDETTPPVTKIYRAMELFYSH
Ga0302131_109894913300031594MarineTLKPLDCNKYAREAEERPFPKDETTPPVTKINRAMVLSYSD
Ga0308019_1037776533300031598MarineASDADERPFPKEETTPPVTNINRAMELPYRYICVN
Ga0308007_1014911713300031599MarineCNRYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0308007_1021017613300031599MarineKPLDCSKYAREAEERPFPKDETTPPVTKINRAMVLSYSD
Ga0308004_1021425033300031630MarineGSNFLKRTLKPLDCNRYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0308004_1037672823300031630MarineLKRTLKPLDCSKYAREAEERPFPSEETTPPVTKINRAMVLSYSD
Ga0307986_1012819033300031659MarineKRTLKPLDCNKYAREAEERPFPNEETTPPVTKINRAMVLSYSD
Ga0308016_1034059113300031695MarineGSNFLKRTLKPLDCNKYARDAEERPFPKEETTPPVTKINRAMVLSYSD
Ga0307998_121056113300031702MarineLKPLDCSKYAREAEERPFPKDETTPPVTKINRAMVLSYSD
Ga0315326_1053761113300031775SeawaterDCKRYASEADDNPFPKDETTPPVTKMYRAMEVCYTL
Ga0310343_1033400913300031785SeawaterTLKPLDCNKYANDAEERPFPNDETTPPVTNINRAMELCYRPI
Ga0310344_1057848213300032006SeawaterYARDADDKPLPSDETTPPVTNIYRAMELLYSDKLLK
Ga0315316_1129290133300032011SeawaterFNKYARDADDRPFPKDETTPPVTNIYRAMELFYSCSC
Ga0315315_1103354633300032073SeawaterDCNKNASDAEDRPFPKDETTPPVTNIYRAMELSYSE
Ga0310342_10284118133300032820SeawaterCNKYAKDAEERPLPREETTPPVTNIYRAMEVSYSE

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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