Metagenome / Metatranscriptome Family F068800

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068800
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	79 residues
Representative Sequence	RVPTAGRAKLFLLGRHAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLTWTSVTKRGPKMPAHVELTVRW
Number of Associated Samples	107
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.42 %
% of genes near scaffold ends (potentially truncated)	93.55 %
% of genes from short scaffolds (< 2000 bps)	94.35 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.484 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.161 % of family members)
Environment Ontology (ENVO)	Unclassified (24.194 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.935 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 25.47% Coil/Unstructured: 74.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00580	UvrD-helicase	59.68
PF03737	RraA-like	13.71
PF13361	UvrD_C	8.06
PF13527	Acetyltransf_9	2.42
PF03551	PadR	2.42
PF13530	SCP2_2	0.81
PF00583	Acetyltransf_1	0.81
PF14329	DUF4386	0.81
PF00005	ABC_tran	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	59.68
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	59.68
COG3973	DNA helicase IV	Replication, recombination and repair [L]	59.68
COG0684	RNA degradosome component RraA (regulator of RNase E activity)	Translation, ribosomal structure and biogenesis [J]	13.71
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.42
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.42
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.42

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.48 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.48 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.48 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	81.45 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	81.45 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	59.68 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	58.87 %
Unclassified	root	N/A	14.52 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	58.87 %
Unclassified	root	N/A	14.52 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	58.87 %
Unclassified	root	N/A	14.52 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459012\|GOYVCMS01CP08E	Not Available	504	Open in IMG/M
3300002459\|JGI24751J29686_10132862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	526	Open in IMG/M
3300003987\|Ga0055471_10084954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	910	Open in IMG/M
3300004013\|Ga0055465_10189491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	671	Open in IMG/M
3300004463\|Ga0063356_102182755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	842	Open in IMG/M
3300005168\|Ga0066809_10167655	Not Available	578	Open in IMG/M
3300005180\|Ga0066685_10823725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	627	Open in IMG/M
3300005332\|Ga0066388_101681935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1122	Open in IMG/M
3300005343\|Ga0070687_100323467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	986	Open in IMG/M
3300005347\|Ga0070668_100631575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	939	Open in IMG/M
3300005356\|Ga0070674_100904005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	769	Open in IMG/M
3300005441\|Ga0070700_100563531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	887	Open in IMG/M
3300005444\|Ga0070694_101767789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300005456\|Ga0070678_102248726	Not Available	517	Open in IMG/M
3300005459\|Ga0068867_100826050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	828	Open in IMG/M
3300005535\|Ga0070684_100352110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1355	Open in IMG/M
3300005615\|Ga0070702_101810229	Not Available	510	Open in IMG/M
3300005713\|Ga0066905_101233682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	670	Open in IMG/M
3300005764\|Ga0066903_104840366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	716	Open in IMG/M
3300006049\|Ga0075417_10086340	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300006575\|Ga0074053_11851220	Not Available	801	Open in IMG/M
3300006606\|Ga0074062_12691189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1531	Open in IMG/M
3300006844\|Ga0075428_100445856	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300006844\|Ga0075428_102268288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300006880\|Ga0075429_101208505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300006953\|Ga0074063_13749111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	900	Open in IMG/M
3300009094\|Ga0111539_12266681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300009137\|Ga0066709_100545618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1641	Open in IMG/M
3300009147\|Ga0114129_12481358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
3300009147\|Ga0114129_12689407	Not Available	593	Open in IMG/M
3300009162\|Ga0075423_10912889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	931	Open in IMG/M
3300009177\|Ga0105248_11445534	Not Available	778	Open in IMG/M
3300009807\|Ga0105061_1048476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300009868\|Ga0130016_10594713	Not Available	690	Open in IMG/M
3300010047\|Ga0126382_11984336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300010303\|Ga0134082_10103327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1129	Open in IMG/M
3300010325\|Ga0134064_10262876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	643	Open in IMG/M
3300010326\|Ga0134065_10288500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300010337\|Ga0134062_10116054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1163	Open in IMG/M
3300010362\|Ga0126377_12548610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	587	Open in IMG/M
3300010397\|Ga0134124_10634111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1050	Open in IMG/M
3300010399\|Ga0134127_12617603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300011107\|Ga0151490_1792098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300012022\|Ga0120191_10059918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	690	Open in IMG/M
3300012201\|Ga0137365_10864497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300012358\|Ga0137368_10621093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	685	Open in IMG/M
3300012905\|Ga0157296_10100565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	789	Open in IMG/M
3300012915\|Ga0157302_10031369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1406	Open in IMG/M
3300012915\|Ga0157302_10085926	Not Available	964	Open in IMG/M
3300012960\|Ga0164301_10830237	Not Available	710	Open in IMG/M
3300012977\|Ga0134087_10472613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300012984\|Ga0164309_10257580	Not Available	1234	Open in IMG/M
3300012985\|Ga0164308_11413858	Not Available	636	Open in IMG/M
3300013308\|Ga0157375_11756673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300014969\|Ga0157376_10496153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1199	Open in IMG/M
3300015200\|Ga0173480_10295906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	901	Open in IMG/M
3300015372\|Ga0132256_100516348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1306	Open in IMG/M
3300015372\|Ga0132256_101087475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	914	Open in IMG/M
3300015372\|Ga0132256_102038944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300015372\|Ga0132256_102819916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	584	Open in IMG/M
3300015372\|Ga0132256_103084266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300015374\|Ga0132255_102841607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	740	Open in IMG/M
3300015374\|Ga0132255_104984260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300015374\|Ga0132255_105170602	Not Available	552	Open in IMG/M
3300015374\|Ga0132255_105929167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300017657\|Ga0134074_1173568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	759	Open in IMG/M
3300017659\|Ga0134083_10499177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300018031\|Ga0184634_10464195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300018074\|Ga0184640_10266178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	778	Open in IMG/M
3300018077\|Ga0184633_10635729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300018432\|Ga0190275_10052986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3397	Open in IMG/M
3300018469\|Ga0190270_10621438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1057	Open in IMG/M
3300018469\|Ga0190270_11162723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	808	Open in IMG/M
3300018482\|Ga0066669_10292531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1316	Open in IMG/M
3300019356\|Ga0173481_10457512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	639	Open in IMG/M
3300019356\|Ga0173481_10555351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300019356\|Ga0173481_10846845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300025318\|Ga0209519_10541763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648	Open in IMG/M
3300025567\|Ga0210076_1032108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1125	Open in IMG/M
3300025791\|Ga0210115_1076148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300025908\|Ga0207643_10265744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1060	Open in IMG/M
3300025926\|Ga0207659_11335712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	615	Open in IMG/M
3300025937\|Ga0207669_10479693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	991	Open in IMG/M
3300025972\|Ga0207668_10042585	All Organisms → cellular organisms → Bacteria	3076	Open in IMG/M
3300026075\|Ga0207708_10591451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	939	Open in IMG/M
3300027560\|Ga0207981_1003260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2884	Open in IMG/M
3300027561\|Ga0209887_1007322	All Organisms → cellular organisms → Bacteria	3027	Open in IMG/M
3300027907\|Ga0207428_10021926	All Organisms → cellular organisms → Bacteria	5400	Open in IMG/M
3300028587\|Ga0247828_10577169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300028592\|Ga0247822_11016380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	685	Open in IMG/M
3300028708\|Ga0307295_10020494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1617	Open in IMG/M
3300028708\|Ga0307295_10157164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300028712\|Ga0307285_10190076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300028714\|Ga0307309_10013156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1519	Open in IMG/M
3300028720\|Ga0307317_10044278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1416	Open in IMG/M
3300028733\|Ga0302261_1107653	Not Available	660	Open in IMG/M
3300028754\|Ga0307297_10156757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	779	Open in IMG/M
3300028793\|Ga0307299_10077580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1234	Open in IMG/M
3300028793\|Ga0307299_10341998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300028810\|Ga0307294_10105747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	896	Open in IMG/M
3300028812\|Ga0247825_11228192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300028819\|Ga0307296_10107513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1496	Open in IMG/M
3300028828\|Ga0307312_10325270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1004	Open in IMG/M
3300030000\|Ga0311337_11188187	Not Available	667	Open in IMG/M
3300030336\|Ga0247826_10526330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	897	Open in IMG/M
3300030336\|Ga0247826_11319406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	581	Open in IMG/M
3300030336\|Ga0247826_11609073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300031455\|Ga0307505_10472566	Not Available	602	Open in IMG/M
3300031564\|Ga0318573_10067300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1783	Open in IMG/M
3300031576\|Ga0247727_10023887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9006	Open in IMG/M
3300031764\|Ga0318535_10407064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	607	Open in IMG/M
3300031769\|Ga0318526_10112991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1091	Open in IMG/M
3300031893\|Ga0318536_10210338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	990	Open in IMG/M
3300031912\|Ga0306921_11737533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300031997\|Ga0315278_11989510	Not Available	543	Open in IMG/M
3300032000\|Ga0310903_10248028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	856	Open in IMG/M
3300032013\|Ga0310906_10422880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	885	Open in IMG/M
3300032039\|Ga0318559_10023607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2385	Open in IMG/M
3300032044\|Ga0318558_10423280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300032075\|Ga0310890_10354479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1074	Open in IMG/M
3300032122\|Ga0310895_10517057	Not Available	602	Open in IMG/M
3300033290\|Ga0318519_10835214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300034114\|Ga0364938_109715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300034147\|Ga0364925_0347502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.19%
Host-Associated	Host-Associated	25.00%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.74%
Plants	Host-Associated → Plants	25.00%
Aquatic	Environmental → Aquatic	6.45%
Wastewater	Engineered → Wastewater	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.26%
Marine	Environmental → Aquatic → Marine	3.23%
Sediment	Environmental → Aquatic → Sediment	2.42%
Peat	Environmental → Terrestrial → Peat	1.61%
Floodplain	Environmental → Terrestrial → Floodplain	1.61%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Cave	Environmental → Terrestrial → Cave	0.81%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.06%
Loam	Environmental → Terrestrial → Soil → Loam	7.26%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.23%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.42%
Sand	Environmental → Terrestrial → Soil → Sand	1.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.61%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.84%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.42%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.06%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	4.03%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.23%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.23%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.61%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.61%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.81%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028733	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034114	Sediment microbial communities from East River floodplain, Colorado, United States - 9_s17	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N56_05693650	2170459012	Grass Soil	GALIDTKTYACDGAAGSFYCKGAYEELPPGTYTFRVVFAGTTSQPANLDLTVRW
JGI24751J29686_101328622	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	IGRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW*
Ga0055471_100849542	3300003987	Natural And Restored Wetlands	VRLRVPTAGRAKLSLLGTKAPKGINPLIATSNTSARTGQCQGAAGSFYCSAAYEPLPKGTYTWRVTWVSTVQSGPKQPAHVELTVRW*
Ga0055465_101894911	3300004013	Natural And Restored Wetlands	SFRVLLRVPTAGKAKLYLLGKNAPKGGPLITTSNISPSGACQGAAGSFYCKASYEPLPKGKYTWRVTWTSAPGQGSRQPAHVELTVRW*
Ga0063356_1021827552	3300004463	Arabidopsis Thaliana Rhizosphere	TLTTQRAASFRVLLRVPTQGRARLYLLGAKAPKGGPLIDTKTYACEGAAGSFYCRGSYEPLPKGTYTWRIVWKGPVKAHVELTVRW*
Ga0066809_101676551	3300005168	Soil	KLFLLGKHAPGGGPLIDTKTYACDGAAGSFYCKGSYEPLPAGTYTFRVVFVGTTPQPAHVELTVRW*
Ga0066685_108237251	3300005180	Soil	VPTAGRAKLFLLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW*
Ga0066388_1016819352	3300005332	Tropical Forest Soil	SSVTITTHEAAAFRVRLRVPTAGRARLYLLGKHAPKGGPLIRTSNTSGQSSSCQGAAGSFYCSASYESLPKGTYTWRITWLSVVKHGPRVPAHVELTVRW*
Ga0070687_1003234671	3300005343	Switchgrass Rhizosphere	FRVLLRVPTAGRAKLFLIGRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW*
Ga0070668_1006315751	3300005347	Switchgrass Rhizosphere	VTTQKPAAFRVLLRVPTAGRAKLFLIGRHVPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW*
Ga0070674_1009040051	3300005356	Miscanthus Rhizosphere	LRVPTQGTAKLFLFGKHAPKGGPLIRTSPTRPTACDGAAGSFYCTASYEPLPSGTYTWRVSWVGMRRAPAHVELTLRW*
Ga0070700_1005635312	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VLLRVPTAGRAKLFLTGRHAPKGGPLIDTKTYACQGAAGSFYCKAAYEPLPKGTYTWRVTWLSIAQAGPKMPAHVELTVRW*
Ga0070694_1017677892	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	AVSVTTQKPAAFRVVLRVPTAGRAKLFLLGRHAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLAWTSITKRGPKLPAHVELTLRW*
Ga0070678_1022487262	3300005456	Miscanthus Rhizosphere	HAPKGGPLIDTKTYHCDGAAGSWYCKGSYETLPAATYTFRVVFATSAPTNPGGLELTINW
Ga0068867_1008260501	3300005459	Miscanthus Rhizosphere	APKGGPLIRTSPTRPTACDGAAGSFYCTASYEPLPSGTYTWRVSWVGMRRAPAHVELTLRW*
Ga0070684_1003521101	3300005535	Corn Rhizosphere	GRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW*
Ga0070702_1018102291	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	KGGPLIDTTTYHCDGAAGSWYCKGSFETLPAGIYRFRVVFATSAPTNPGGLELTINW*
Ga0066905_1012336822	3300005713	Tropical Forest Soil	AKLFLLGKHAPKGGPLIKTSNTSGQSGGCQGAAGSFYCTASYEPLPRGTYTWRITWVSVAQAGPKMPAHVELTVRW*
Ga0066903_1048403661	3300005764	Tropical Forest Soil	RAKLFLLGKHAPKGGALIHTSNTSANSSGCQGAAGSFYCTASYEPLPRGTYTWKVTWVSVAQAGPKVPAHVELTVRW*
Ga0075417_100863403	3300006049	Populus Rhizosphere	RLYLLGKHAPKGGPLIRTSNTAPTSGCEGAAGSLYCRASFEPLPKGVYTWRVTWRGAPSAPAHVELTVRW*
Ga0074053_118512202	3300006575	Soil	KDAPKGGPLIDTKTYKCDGAAGSWYCKASYEPLPKGKYTWKIGWVGKPKAPAHVELTVRW
Ga0074062_126911891	3300006606	Soil	GGSSSVTITTHHASAFSVLLRVPTAGRAKLFLLGKDAPKGGPLIDTKTYKCDGAAGSWYCKASYEPLPKGKYTWKIGWVGKPKAPAHVELTVRW*
Ga0075428_1004458563	3300006844	Populus Rhizosphere	KHAPKGGPLIRTSNTAPTSGCEGAAGSFYCRASFEPLPRGVYTWRVTWRGAPPAPAHVELTIRW*
Ga0075428_1022682881	3300006844	Populus Rhizosphere	RVPTTGRAKLFLLGRTAPKGGPLIDTKTFGCQGAAGSWYCKASYEPLPKGKYTWKLAWVGTPPNPAHVELTVRW*
Ga0075429_1012085051	3300006880	Populus Rhizosphere	TIPAGKSASVAFSVRKAASFRVVLRVPTQGRAKLFLIGRTAPQGGPLIDTKTYDCEGAAGSFYCRASYEPLPKGTYTWRIAWTGTMPAHVGLAVRW*
Ga0074063_137491112	3300006953	Soil	AAFKVLMRTSTQGRTKLFLLGKHAPKGGPLIDTKTYKCDGAAGSWYCKASYEPLPKGKYTWKIGWVGKPKAPAHVELTVRW*
Ga0111539_122666811	3300009094	Populus Rhizosphere	RVPTAGRAKLFLLGRHAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLTWTSVTKRGPKMPAHVELTVRW*
Ga0066709_1005456184	3300009137	Grasslands Soil	VEAGRVPTAGRAKLYLLGKKAPKGGPLIDTKTYACQGAAGSFYCNASYQPLPAGTYTWKIAWVGTPKTPAHVELTVRW*
Ga0114129_124813582	3300009147	Populus Rhizosphere	SVTIVTHRVASFRVLLRVPTAGRARLYLLGKHAPKGGPLIRTSNTAPTSGCEGAAGSFYCRASFEPLPRGVYTWRVTWRGAPPAPAHVELTIRW*
Ga0114129_126894072	3300009147	Populus Rhizosphere	ASFRVLLRVPTAGRARLYLLGKHAPKGGPLIRTSNTAPTSGCEGAAGSLYCRASFEPLPKGVYTWRVTWRGAPSAPAHVELTVRW*
Ga0075423_109128892	3300009162	Populus Rhizosphere	PKGGPLIHTSNTSANSSGCQGAAGSFYCTASYEPLPKGTYTWRITWASATQAGPKMPAHVELTVRW*
Ga0105248_114455341	3300009177	Switchgrass Rhizosphere	TRVYLLGAHAPKGGPLIDTKTYHCDGAAGSWYCKGSYETLPAATYTFRVVFATSAPTNPGGLELTINW*
Ga0105061_10484761	3300009807	Groundwater Sand	TIPAGKSSSVTFTVHKAASFRVLLRVPTQGRAKLFLTGNTAPSGGPLIDTKTFACEGAAGSFYCRAAYEPLPRGTYRWRIRWTGKKPAHVELTVRW*
Ga0130016_105947132	3300009868	Wastewater	TLGRTRLYLLGAHAPKGGPLIDTKTARCDGAAGSWYCRGSYEPLPAGTYTFRIVFSSSVPQSPGGFELTVRW*
Ga0126382_119843362	3300010047	Tropical Forest Soil	SVTFTTHRAASFRIRLRVPTAGRARLFLLGKHAPRGGALIHTSNTSANSSGCQGAAGSFYCTASYEPLPKGTYTWKVTWVSVTQAGPKMPAHVELTVRW*
Ga0134082_101033272	3300010303	Grasslands Soil	LGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW*
Ga0134064_102628762	3300010325	Grasslands Soil	SVTIQTHRKPAFKVLLRVPTAGRAKLFLLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW*
Ga0134065_102885002	3300010326	Grasslands Soil	LLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW*
Ga0134062_101160541	3300010337	Grasslands Soil	FKVLLRVPTAGRAKLFLLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW*
Ga0126377_125486102	3300010362	Tropical Forest Soil	KLYLLGKHAPKGGALIHTSNTSANSSGCQGAAGSFYCIASYEPLPKGTYTWKITWVSVTQAGPKMPAHVELTVRW*
Ga0134124_106341111	3300010397	Terrestrial Soil	TAVSVTTQKPAPFRVLLRVPTAGRAKLFLIGRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW*
Ga0134127_126176032	3300010399	Terrestrial Soil	AFRVLLRVPTAGRAKLFLLGKNAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLTWTSVTKRGPKMPAHVELTVRW*
Ga0151490_17920982	3300011107	Soil	PTAGRAKLVLLGKHAPKGGPLITTSNTSPASGCQGAAGSFYCKASYEPLPKGAYTWRVVWQGQQPAHVELTVRW*
Ga0120191_100599181	3300012022	Terrestrial	TIRPGKSTWVEISTHRRAAFRVVLRVPTQGRAKLFLEGRTAPRGGPLIDTKTYACEGAAGSFYCRGAYEPLPKGNYRWRIRWLGTSSAHVELTVRW*
Ga0137365_108644972	3300012201	Vadose Zone Soil	VAITPHHAASFKVLLRVPTAGRAKLYLLGKKAPKGGPLIDTKTYACQGAAGSFYCNASYQPLPAGTYTWKIAWVGTPKTPAHVELTVRW*
Ga0137368_106210933	3300012358	Vadose Zone Soil	VLVVAHKKPAFKVLLSVPTAGRAKLFLLGKHAPKGGPLIDTKTYDCDGAAGSFYCKASFEPLPKGTYTWRLTWVSTVQQGPKQPAHVELTVRW*
Ga0157296_101005652	3300012905	Soil	LLRVPTAGRAKLFLLGKTAPKGGPLIDTKTYACDGAAGSFYCKGSYERLPRGTYTWRVRWVGTGVVKMPAHVELTVRW*
Ga0157302_100313692	3300012915	Soil	AAFRVLLRVPTAGRAKLFLIGRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW*
Ga0157302_100859261	3300012915	Soil	GTHAPKGGALIDTKTYACDGAAGSSYCKGSYEPLPAGTYTFRVVFAGTTAQPAHLELTVRW*
Ga0164301_108302371	3300012960	Soil	KGGPLIDTKAYGCDGAAGSFYCKGNYEPLPAGTYTFRVVFAGTTAQPAHLELTVRW*
Ga0134087_104726131	3300012977	Grasslands Soil	KVLLRVPTAGRAKLFLLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW*
Ga0164309_102575801	3300012984	Soil	KTYKCDGAAGSWYCKGSYEPLPAGSYTFRVVFSSSVPTNPGGLALTVSW*
Ga0164308_114138582	3300012985	Soil	TQGRTKLFLLGKYAPKGGPLIDTKAYACDGAAGSFYCKGSYEPLPAGTYTFRVVFAGTTPQPAHLELTVRW*
Ga0157375_117566731	3300013308	Miscanthus Rhizosphere	KSAAFRVLLRVPTAGRAKLFLLGRHAPKGGPLIDTKTYRCDGAAGSWYCKGSYEALPPGTYTFRVVFTSAAPTNPGGLELTVSW*
Ga0157376_104961533	3300014969	Miscanthus Rhizosphere	FLLGKYAPKGGPLIDTKTYACDGAAGSFYCKGSYEPLPAGTYTFRVVFAGTTPQPAHLELTVRW*
Ga0173480_102959062	3300015200	Soil	SVTITTHKAASFSVRLRVPTAGRAKLFLLGTHAPKGGPLITTSNTSQTSSGCQGAAGSFYCTASYEPLPKGTYTWRVTWVSTTKRGPKMPAHVELTVRW*
Ga0132256_1005163481	3300015372	Arabidopsis Rhizosphere	AKLFLLGTHAPKGGPLIHTSNTSSNSSGCQGAAGSFYCTASFEPLPKGTYTWRITWVSMTQAGPRMPAHVELTVRW*
Ga0132256_1010874752	3300015372	Arabidopsis Rhizosphere	GRARLFLLGKKAPKGGPLVDTKTSSCEGAAGSFFCRASFEPLPKGTYAWRISWLGRQPAHVELTVRW*
Ga0132256_1020389442	3300015372	Arabidopsis Rhizosphere	LLRVPTTGRAKLFLLGKTAPKGGPLIDTKTYACDGAAGSFYCKGSYQPLPKGTYTWRITWVSTPKSGPKMPAHVELTVRW*
Ga0132256_1028199163	3300015372	Arabidopsis Rhizosphere	TRLYLVGANAPKGGPLIDTKTYHCDGAAGSWYCKGSYEALPAGTYTFRVAFATSAPTNPGGLELTVTW*
Ga0132256_1030842661	3300015372	Arabidopsis Rhizosphere	RVLLRVPTAGRAKLFLIGRPAPNGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW*
Ga0132255_1028416071	3300015374	Arabidopsis Rhizosphere	PAAFRVLLRVPTAGRAKLYLLGKHAPKGGPLITTSNTTATSCDGAAGSFYCKGSYEPLPKGTYTWRIAWVGKPTAPAHVELTVRW*
Ga0132255_1049842601	3300015374	Arabidopsis Rhizosphere	SGSSSSVTIVTHRPAAFKVLLRVPTPGKAKLFLLGKKAPKGGPLITTSNTAPSSACEGAAGSFYCKGSYEALPKGTYTWRITWAGKPKAPAHVELTVRW*
Ga0132255_1051706022	3300015374	Arabidopsis Rhizosphere	LLGTHAPKGGPLIDTKTYACDGAAGSFYCKGSYEALPAGTYTFKVVFAGTTAQPAHLELTVRW*
Ga0132255_1059291671	3300015374	Arabidopsis Rhizosphere	KHAPKGGPLIHTSNTSSNSSGCQGAAGSFYCTASFEPLPKGAYTWRITWVSVTQAGPKMPAHVELTVRW*
Ga0134074_11735682	3300017657	Grasslands Soil	VPTAGRAKLLLLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW
Ga0134083_104991772	3300017659	Grasslands Soil	IQTHRKPAFKVLLRVPTAGRAKLFLLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW
Ga0184634_104641952	3300018031	Groundwater Sediment	VTIQTHRAPLFRVLLRVPTQGRAKLFLLGKTAPQDGPLIDTKTYACEGAAGSFYCKGSYEKLPAGTYTWRIAWVGVAKMPAHVELTVRW
Ga0184640_102661782	3300018074	Groundwater Sediment	VLLRVPTAGRAKLFLLGKHAPKGGPLIQTSNTAPTTACEGAAGSFYCRASYEPLPRGTYTWRIRWNGQQPAHVELTVRW
Ga0184633_106357292	3300018077	Groundwater Sediment	VPSGTSSSVTIQTHRGPPAFRVLLRAPTQGRAKLFLLGKTAPKGGPLIDTKTYACEGAAGSFYCKGSYEKLPAGTYTWRIAWVGVAKMPAHVELTVRW
Ga0190275_100529862	3300018432	Soil	VLRAPTQGRARLFLPGKNAPKGGPLIDTRTSNCEGTAGSFYCRASYEPLPEGTYTWRVTWSGRLAAHVRLTVRW
Ga0190270_106214382	3300018469	Soil	PKGGPLIQTSNTSPTACEGAAGSFYCRASYEPLPRGTYTWRVRWNGPQPAHVELTVRW
Ga0190270_111627233	3300018469	Soil	LFLLGKTAPKPGLLIDTKTFACEGAAGSFFCKASYEPLPKGRYTWKIAWVGTPKKPAHVELTVRW
Ga0066669_102925311	3300018482	Grasslands Soil	RKPPFKVPRRVPTAGRPKLFLLGKHAPTGGPLIDTKTYHCSGAAGSWYCKASYETLPIGTYTWRIAWVGVPKAPAHVELTVRW
Ga0173481_104575122	3300019356	Soil	AAFRVLLRVPTAGRAKLFLIGRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW
Ga0173481_105553512	3300019356	Soil	SVTIQTHRAPAFNVLLRVPTQGRAKLFLLGKTAPKGGPLIDTKTYACDGAAGSFYCKGSYERLPKGTYTWRVRWVGTGVVKMPAHVELTVRW
Ga0173481_108468452	3300019356	Soil	VLLRVPTAGRAKLFLIGRHAPKGGPLIDTKTYACEGAAGSYYCRGSYEPLPKGTYTWRLTWTSVTKRGPKMPAHVELTVRW
Ga0209519_105417631	3300025318	Soil	RFNTHKAASFRVLLRVPTQGRGQLYLLGKHAPKGGPLIDTKTFDCEGAAGSFFCKAAYEPLPKGTYAWRIRWLGKQPAHVELTVRW
Ga0210076_10321082	3300025567	Natural And Restored Wetlands	PTAGRAKLSLLGTKAPKGINPLIATSNTSARTGQCQGAAGSFYCSAAYEPLPKGTYTWRVTWVSTVQSGPKQPAHVELTVRW
Ga0210115_10761482	3300025791	Natural And Restored Wetlands	SVRLRVPTAGRAKLSLLGTKAPKGINPLIATSNTSARTGQCQGAAGSFYCSAAYEPLPKGTYTWRVTWVSTVQSGPKQPAHVELTVRW
Ga0207643_102657441	3300025908	Miscanthus Rhizosphere	AKLFLIGRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW
Ga0207659_113357122	3300025926	Miscanthus Rhizosphere	STAASVTTQKPAAFRVLLRVPTAGRAKLFLIGRHAPKGGPLIDTKTYACDGAAGSYYCKGSYEPLPKGTYTWRLTWTSITKRGPKMPAHVELTVRW
Ga0207669_104796932	3300025937	Miscanthus Rhizosphere	THKAASFSVRLRVPTAGRAKLFLLGTHAPKGGPLITTSNTSPTSSGCQGAAGSFYCTASYEPLPKGTYTWRVTWVSTTKRGPKMPAHVELTVRW
Ga0207668_100425851	3300025972	Switchgrass Rhizosphere	TQKPAAFRVLLRVPTAGRAKLFLLGRHAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLSWVSVTKRGPKMPGHVELTVRW
Ga0207708_105914511	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	PAHPEKVLLRVPTAGRAKLFLTGRHAPKGGPLIDTKTYACQGAAGSFYCKAAYEPLPKGTYTWRVTWLSIAQAGPKMPAHVELTVRW
Ga0207981_10032601	3300027560	Soil	SSSVTVTTHRPPSFRVLLRVPTAGRAKLVLLGKHAPKGGPLITTSNTSPASGCQGAAGSFYCKASYEPLPKGAYTWRVVWQGQQPAHVELTVRW
Ga0209887_10073221	3300027561	Groundwater Sand	VPTQGRARLFLRGKAAPRVGPLIDTKTHSCQGAAAPFYCRAAYEPLPKGRYTWRISWTGAKPAHVELTVRW
Ga0207428_100219265	3300027907	Populus Rhizosphere	KHAPKGGPLIRTSNTAPTSGCEGAAGSLYCRASFEPLPKGVYTWRVTWRGAPSAPAHVELTVRW
Ga0247828_105771691	3300028587	Soil	TAGRAKLFLLGKHAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYSWRLSWTSVTKRGPKMPAHVELTVRW
Ga0247822_110163801	3300028592	Soil	RAKLFLLGKTAPKGGPLIDTKTYACDGAAGSFYCKGSYERLPKGTYTWRVRWVGTGVVKVPAHVELTVRW
Ga0307295_100204941	3300028708	Soil	LRVPTAGRAKLFLLGKHAPKGGPLITTSNTSPATACDGAAGSFYCKASYEPLPKGTYTWRITWAGKPKAPAHVELTVRW
Ga0307295_101571642	3300028708	Soil	LLRVPTAGRAKLFLLGTHAPKGGPLIQTSNTAPATACEGAAGSFYCRASYEPLPRGTYTWRIRWNGQQPAHVELTVRW
Ga0307285_101900762	3300028712	Soil	VLLRVPTAGRAKLFLLGKHAPKGGPLIQTSNTAPATACEGAAGSFYCRASYEPLPRGTYTWRIRWSGPQPAHVELTVRW
Ga0307309_100131563	3300028714	Soil	STQGRTKLFLLGAHAPKGGPLIDTKTYACDGAAGSFYCKGSYEPLPAGTYTFRVVFAGTTAQPAHLELTVRW
Ga0307317_100442781	3300028720	Soil	SSSVTFTTHRPASFRVLLRVPTAGRAKLFLLGKHAPKGGPLIQTSNTSPATACEGAAGSFYCRASYEPLPRGTYTWRIRWNGPQPAHVELTVRW
Ga0302261_11076531	3300028733	Fen	RTSTQGRTRLYLLGKHAPKGGALIDTKTYACDGAAGSFYCKGSYEALPAGTYTFRVVFTGTTPNPGHLELTVRW
Ga0307297_101567572	3300028754	Soil	SSVTFTTHRPASFRVLLRVPTAGRAKLFLLGTHAPKGGPLIQTSNTAPATACEGAAGSFYCRASYEPLPRGTYTWRIRWNGQQPAHVELTVRW
Ga0307299_100775801	3300028793	Soil	LFLLGKHAPKGGPLITTSNTSPATACDGAAGSFYCKASYEPLPKGTYTWRITWAGKPKAPAHVELTVRW
Ga0307299_103419981	3300028793	Soil	KAGASSVTITTHRPASFRVLLRVPTAGRAKLFLTGAHAPTGGPLIKTSNTAPNPACQGAAGSFYCRGSYEPLPKGTYTWRVVWRGQQPAHVELTVRW
Ga0307294_101057472	3300028810	Soil	QGRAKLFLLGKTAPKGGALIDTKTYACDGAAGSFYCKGSYERLPKGTYTWRITWTSIVRAGPRMPAHVELTVRW
Ga0247825_112281921	3300028812	Soil	NVLLRVPTQGRAKLFLLGKTAPKGGPLIDTKTYACDGAAGSFYCKGSYERLPKGTYTWRVRWVGTGVVKMPAHVELTVRW
Ga0307296_101075131	3300028819	Soil	FRVLLRVPTAGRAKLFLLGKHAPKGGPLITTSNTSPATACDGAAGSFYCKASYEPLPKGTYTWRITWAGKPKAPAHVELTVRW
Ga0307312_103252701	3300028828	Soil	RAKLFLTGAHAPTGGPLIKTSNTAPNPACQGAAGSFYCRGSYEPLPKGTYTWRVVWRGQQPAHVELTVRW
Ga0311337_111881871	3300030000	Fen	MRTSTQGRTRLYLLGKHAPKGGALIDTKTYACDGAAGSFYCKGSYEALPAGTYTFRVVFTGTTPNPGHLELTVRW
Ga0247826_105263301	3300030336	Soil	HKAASFRVLLRVPTAGRAKLFLTGRHAPKGGPLIDTKTYACQGAAGSFYCKAAYEPLPKGTYTWRVTWLSIAQAGPKMPAHVELTVRW
Ga0247826_113194062	3300030336	Soil	KPAAFRVVLRVPTAGRAKLFLLGKKAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLTWTSVTKRGPKMPAHVELTVRW
Ga0247826_116090732	3300030336	Soil	QTHKAASFSVRMRVPTAGRAKLFLLGKTAPKGGPLIDTKTFGCQGAAGSFICTVSYEPLLKGKYTWKIVWVGTPKKPAHVELTVRW
Ga0307505_104725661	3300031455	Soil	PKGGPLIDTKTYACEGAAGSLYCNGSYESLPAGAYTFRVVRAGTTPQAAHLELTVRW
Ga0318573_100673001	3300031564	Soil	RVPTAGTAKLYLLGKKAPKGGPLIQTSNVKEGSSCSGAAGSFYCKASYEPLPRGTYTWRITWKSMVVQGPRMPAHVELTVTW
Ga0247727_100238876	3300031576	Biofilm	VLLRAPTQGRAKLFLLGKTAPKGGPLIDTKTYACEGAAGSFYCKGAYEKLPAGTYTWRVAWVGVAKMPAHVELTVRW
Ga0318535_104070642	3300031764	Soil	PKGGPLIQTSNVKEGSSCSGAAGSFYCKASYEPLPRGTYTWRITWKSMVVQGPRMPAHVELTVAW
Ga0318526_101129911	3300031769	Soil	SGSSSSITVTTHRSAAFKVLLRVPTAGTAKLYLLGKRAPKGGPLIQTSNVKEGSSCSGAAGSFYCKASYEPLPRGTYTWRITWKSMVVQGPRMPAHVELTVAW
Ga0318536_102103382	3300031893	Soil	LGKRAPKGGPLIQTSNVKEGSSCSGAAGSFYCKASYEPLPRGTYTWRITWKSMVVQGPRMPAHVELTVAW
Ga0306921_117375331	3300031912	Soil	AKLYLLGKHAPKGGPLIRTSNTSPQSAACQGAAGSFYCKGSYQPLPKGTYTWRITWTSVVQQGPKTPAHVELTVNW
Ga0315278_119895101	3300031997	Sediment	LYLLGKHAPKGGPLIDTKTFGCQGAAGSFFCKASYEPLPAGAYRWKIAWVGTPKKPAHVELTVRW
Ga0310903_102480282	3300032000	Soil	AAFRVVLRVPTAGRAKLFLLGKKAPKGGPLIDTKTYACEGAAGSYYCKGSYEPLPKGTYTWRLTWTSVTKRGPKMPAHVELTVRW
Ga0310906_104228802	3300032013	Soil	VLLRVPTQGRAKLFLLGKTAPKGGPLIDTKTYACDGAAGSFYCKGSYERLPKGTYTWRVRWVGTGVVKMPAHVELTVRW
Ga0318559_100236072	3300032039	Soil	TTHRSAAFKVLLRVPTAGTAKLYLLGKRAPKGGPLIQTSNVKEGSSCSGAAGSFYCRASYEPLPRGTYTWRITWKSMVVQGPRMPAHVELTVAW
Ga0318558_104232801	3300032044	Soil	VLLRVPTAGTAKLYLLGKRAPKGGPLIQTSNVKEGSSCSGAAGSFYCKASYEPLPRGTYTWRITWKSMVVQGPRMPAHVELTVAW
Ga0310890_103544792	3300032075	Soil	GGPLIRTSPTRPTACDGAAGSFYCTASYEPLPSGTYTWRVSWVGMRRAPAHVELTLRW
Ga0310895_105170572	3300032122	Soil	KLFLLGTNAPKGGPLIDTKTFGCQGAAGSFFCSASYEPLPKGKYTWKIAWVGTPKKAAHVELTVRW
Ga0318519_108352142	3300033290	Soil	SSSSITVTTHRSAAFKVLLRVPTAGTAKLYLLGKRAPKGGPLIQTSNVKEGSSCSGAAGSFYCKASYEPLPRGTYTWRITWKSMVVQGPRMPAHVELTVAW
Ga0364938_109715_329_541	3300034114	Sediment	QGRAKLFLLGKTAPKGGPLIDTKTYACEGAAGSFYCKGSYEPLPKGKYTWRVSWVGVAKAPAHVELTVRW
Ga0364925_0347502_12_245	3300034147	Sediment	VLLRVPTQGRAKLFLLGKTAPKGGPLIDTRTYACQGAAGSFDCKGSYEQLPKGTYTWRVSWVGVASLPAHVELTVRW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068800

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences