Metagenome / Metatranscriptome Family F068613

Basic Information
Family ID	F068613
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	45 residues
Representative Sequence	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEVRR
Number of Associated Samples	59
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.26 %
% of genes near scaffold ends (potentially truncated)	16.94 %
% of genes from short scaffolds (< 2000 bps)	72.58 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (86.290 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (60.484 % of family members)
Environment Ontology (ENVO)	Unclassified (66.129 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (68.548 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1BB_Man_B_Liq_inBBDRAFT_100010530 2Ga0068876_100212627 3Ga0068876_101549724 4Ga0068876_101972653 5Ga0068872_101965935 6Ga0078894_100149018 7Ga0070749_1000152320 8Ga0070749_100186617 9Ga0070749_101171911 10Ga0070749_101341332 11Ga0070749_102580933 12Ga0070749_103372231 13Ga0070749_105640832 14Ga0070754_102755332 15Ga0070754_105116182 16Ga0075477_100454136 17Ga0070750_101730493 18Ga0070750_104169602 19Ga0070746_100979113 20Ga0070745_12549341 21Ga0070753_12243491 22Ga0099851_10014369 23Ga0099851_10746033 24Ga0099851_10746313 25Ga0099851_10773853 26Ga0099851_11869231 27Ga0099851_12121113 28Ga0099851_12914711 29Ga0099849_10812414 30Ga0099848_100196510 31Ga0099848_10186069 32Ga0099848_10228406 33Ga0099848_10511612 34Ga0099848_11507272 35Ga0099848_11687913 36Ga0099846_10822173 37Ga0099846_11784883 38Ga0099846_12106871 39Ga0070751_10520841 40Ga0070751_12835853 41Ga0099850_10709212 42Ga0099850_13797241 43Ga0099850_13855762 44Ga0099850_13926572 45Ga0099850_14113472 46Ga0108970_108930193 47Ga0114337_10854784 48Ga0114363_10032964 49Ga0114363_11108184 50Ga0102960_11901144 51Ga0102830_11940831 52Ga0127391_10411053 53Ga0127412_100231063 54Ga0132221_10012031 55Ga0129348_10635814 56Ga0129333_100040298 57Ga0129333_107367773 58Ga0129333_108119863 59Ga0129333_112099472 60Ga0129333_112489993 61Ga0136549_100070636 62Ga0136549_1000898216 63Ga0136549_101131482 64Ga0181359_11119342 65Ga0213866_100184868 66Ga0222719_103309353 67Ga0212025_10649751 68Ga0212029_10183812 69Ga0212029_10254462 70Ga0212031_10150784 71Ga0212031_10215723 72Ga0212031_10243392 73Ga0196905_10011459 74Ga0196905_10095428 75Ga0196905_10115333 76Ga0196905_10141177 77Ga0196905_10222552 78Ga0196905_10387044 79Ga0196905_11074801 80Ga0196905_11504771 81Ga0196901_100891010 82Ga0196901_10786062 83Ga0196901_11338892 84Ga0196901_12457511 85Ga0208161_10135071 86Ga0208161_10194554 87Ga0208161_10404272 88Ga0208161_10965481 89Ga0208161_11130702 90Ga0208160_10134724 91Ga0208160_11684982 92Ga0208428_11530633 93Ga0208795_11205013 94Ga0208898_10598543 95Ga0208162_10009138 96Ga0208019_10941381 97Ga0208019_11101102 98Ga0208150_10298912 99Ga0208644_10022298 100Ga0208644_11541304 101Ga0208644_12124421 102Ga0208644_12335802 103Ga0209990_100557612 104Ga0209990_100672576 105Ga0209990_104795192 106Ga0307380_107289243 107Ga0307380_107483732 108Ga0307379_106076972 109Ga0307378_110417762 110Ga0307376_102304253 111Ga0307375_105040252 112Ga0315907_100104985 113Ga0315907_101149734 114Ga0315899_1000125322 115Ga0315904_108928724 116Ga0334982_0032168_2443_2577 117Ga0334987_0124373_1790_1933 118Ga0310127_037794_1589_1726 119Ga0310130_0001378_3078_3221 120Ga0310130_0009574_2756_2893 121Ga0310130_0023731_348_485 122Ga0310130_0092871_141_284 123Ga0310130_0193553_81_218 124Ga0310143_01009_9871_10005
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1BB_Man_B_Liq_inBBDRAFT_100010530 2Ga0068876_100212627 3Ga0068876_101972653 4Ga0078894_100149018 5Ga0070749_101171911 6Ga0070749_105640832 7Ga0070745_12549341 8Ga0099851_10014369 9Ga0099851_11869231 10Ga0099851_12914711 11Ga0102830_11940831
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44. 1Ga0099850_13797241 2BB_Man_B_Liq_inBBDRAFT_100010530 3Ga0078894_100149018 4Ga0070749_1000152320 5Ga0070749_101171911 6Ga0070749_105640832 7Ga0099851_11869231 8Ga0099848_10228406 9Ga0108970_108930193 10Ga0129333_100040298 11Ga0136549_100070636 12Ga0136549_1000898216 13Ga0212029_10183812 14Ga0212029_10254462 15Ga0196901_11338892 16Ga0209990_104795192 17Ga0307380_107289243 18Ga0307379_106076972 19Ga0315899_1000125322 20Ga0310130_0193553_81_218 21Ga0310143_01009_9871_10005
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 36.99% β-sheet: 0.00% Coil/Unstructured: 63.01%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00929	RNase_T	33.87
PF08774	VRR_NUC	19.35
PF04851	ResIII	1.61
PF12684	DUF3799	1.61
PF01844	HNH	1.61
PF08291	Peptidase_M15_3	0.81
PF16778	Phage_tail_APC	0.81
PF03330	DPBB_1	0.81
PF01653	DNA_ligase_aden	0.81
PF13392	HNH_3	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	0.81
COG4643	Uncharacterized domain associated with phage/plasmid primase	Mobilome: prophages, transposons [X]	0.81

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	13.71 %
Unclassified	root	N/A	86.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	4.03 %
Unclassified	root	N/A	86.29 %
Viruses	superkingdom	All Organisms → Viruses	9.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.03 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	8.06 %
Unclassified	root	N/A	86.29 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	8.06 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.23 %
Unclassified	root	N/A	86.29 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	3.23 %
Unclassified	root	N/A	86.29 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	8.06 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8.06 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.23 %
Unclassified	root	N/A	86.29 %

Name	Rank	Taxonomy	Distribution
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	2.42 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.23 %
Unclassified	root	N/A	86.29 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.23 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	2.42 %
Unclassified	root	N/A	86.29 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.23 %
Unclassified	root	N/A	86.29 %
unclassified Siphoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae	2.42 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.23 %
Synechococcus phage S-CBS2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS2	2.42 %
Unclassified	root	N/A	86.29 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000401\|BB_Man_B_Liq_inBBDRAFT_1000105	All Organisms → Viruses	13664	Open in IMG/M
3300005527\|Ga0068876_10021262	Not Available	4103	Open in IMG/M
3300005527\|Ga0068876_10154972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1345	Open in IMG/M
3300005527\|Ga0068876_10197265	Not Available	1169	Open in IMG/M
3300005528\|Ga0068872_10196593	Not Available	1153	Open in IMG/M
3300005662\|Ga0078894_10014901	Not Available	6186	Open in IMG/M
3300006802\|Ga0070749_10001523	Not Available	15687	Open in IMG/M
3300006802\|Ga0070749_10018661	Not Available	4413	Open in IMG/M
3300006802\|Ga0070749_10117191	Not Available	1565	Open in IMG/M
3300006802\|Ga0070749_10134133	Not Available	1448	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	88.71%
Plants	Host-Associated → Plants	0.81%
Terrestrial	Environmental → Terrestrial	10.48%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	5.65%
Freshwater	Environmental → Aquatic → Freshwater	15.32%
Leaf	Host-Associated → Plants → Leaf	0.81%
Marine	Environmental → Aquatic → Marine	67.74%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.61%
Sediment	Environmental → Aquatic → Sediment	3.23%
Soil	Environmental → Terrestrial → Soil	4.84%
Unclassified	Environmental → Aquatic → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	4.84%
Coastal	Environmental → Aquatic → Marine → Coastal	66.13%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.81%
Lake	Environmental → Aquatic → Freshwater → Lake	4.03%
Lentic	Environmental → Aquatic → Freshwater → Lentic	7.26%
Pond	Environmental → Aquatic → Freshwater → Pond	0.81%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.81%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	5.65%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.81%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	66.13%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	7.26%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	5.65%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	4.84%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.03%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	60.48%
Bioluminescent Bay	Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay	0.81%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.81%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.81%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.81%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	5.65%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.23%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.61%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	7.26%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	4.84%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	2.42%
Marine Methane Seep Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment	2.42%
Meromictic Pond	Environmental → Aquatic → Freshwater → Pond → Unclassified → Meromictic Pond	0.81%
Meromictic Pond	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond	0.81%
Methane Seep	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Methane Seep	0.81%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.81%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.81%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	4.84%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000401	Marine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M

Showing 1 to 10 of 59 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BB_Man_B_Liq_inBBDRAFT_100010530	3300000401	Bioluminescent Bay	MSRRVSDLCAAVIAAWALAMIGIEAGAHHSPTHSGTQEVMRHD*
Ga0068876_100212627	3300005527	Freshwater Lake	MMTPHRFGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVMRHD*
Ga0068876_101549724	3300005527	Freshwater Lake	MMTPRRLGDICSFVIAAWVFAMIGIEAGAHHSPTHSGTQQVVRHD*
Ga0068876_101972653	3300005527	Freshwater Lake	VTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPVVEVRK*
Ga0068872_101965935	3300005528	Freshwater Lake	MMTPHRFGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVVRHD*
Ga0078894_100149018	3300005662	Freshwater Lake	MTPRRLGDVCSFVIAVWAFAMIGLDVNAHHGRTHSGSQPLVEVKR*
Ga0070749_1000152320	3300006802	Aqueous	MMTPHRLGDICAALIAAWAFAMIGLEVGAHHQPTHSGTQQVVRHD*
Ga0070749_100186617	3300006802	Aqueous	MTAKRVADACAFVIAAWAFAMLGIEAAAHHGSTHSGTQQAVEVRR*
Ga0070749_101171911	3300006802	Aqueous	ISGGLIMTAKRVADACAFVIAAWAFAMLGIEAAAHHGSAHSGTQRVVEVRR*
Ga0070749_101341332	3300006802	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRR*
Ga0070749_102580933	3300006802	Aqueous	MMTPNRLGDICAALIAAWAFAMIGIEAGAHHSPTHSGTQEVVRHD*
Ga0070749_103372231	3300006802	Aqueous	MTPRRLGDVCSFVIAAWAFAMIGLDVNAHHGRTHSGSQPVVEVRR*
Ga0070749_105640832	3300006802	Aqueous	MTPNRISNICAAIIAAWAFAMIGIESGAHHQPTHSGTQEYVKHDHD*
Ga0070754_102755332	3300006810	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVMEVRK*
Ga0070754_105116182	3300006810	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIKAAAHHGSTHSGAQRVVEVRR*
Ga0075477_100454136	3300006869	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGAQRVVEVRR*
Ga0070750_101730493	3300006916	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEATAHHGSTHSGTQQVVEVRR*
Ga0070750_104169602	3300006916	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQAVEVRR*
Ga0070746_100979113	3300006919	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVLEVRR*
Ga0070745_12549341	3300007344	Aqueous	AFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRNER*
Ga0070753_12243491	3300007346	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEARNER*
Ga0099851_10014369	3300007538	Aqueous	MTPKRIGDVCAFVIAAWAFAMIGLEVGAHHQPTHSGTQEVVR*
Ga0099851_10746033	3300007538	Aqueous	MTPKRVSDVCAFVIAAWAFAMIGLEVGAHHAPTHSGTQEVVRHD*
Ga0099851_10746313	3300007538	Aqueous	MTPKRIGDVCAFVIAAWAFAMIGLEVGAHHAPTHSGTQEVARHD*
Ga0099851_10773853	3300007538	Aqueous	MNPRVIGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPMVEVRK*
Ga0099851_11869231	3300007538	Aqueous	DVWAFVISACALAMLGIEAAAHHGSTHSGTQQAVKVRR*
Ga0099851_12121113	3300007538	Aqueous	MTPRVIGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRR*
Ga0099851_12914711	3300007538	Aqueous	VTNHISNICAAIIAAWAFAAIGIEAGAHHQPTHSGTQQVVRK*
Ga0099849_10812414	3300007539	Aqueous	MTARRLGDVCALVIAAWAFAMLGIEATAHHGSTHSGTQRVVEVRR*
Ga0099848_100196510	3300007541	Aqueous	MTPKRVSEVCAFVIAAWAFAMIGLEVGAHHAPTHSGTQEVVRHD*
Ga0099848_10186069	3300007541	Aqueous	RLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRNER*
Ga0099848_10228406	3300007541	Aqueous	VTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRK*
Ga0099848_10511612	3300007541	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEVAAHHGSTHSGTQPMVEVRK*
Ga0099848_11507272	3300007541	Aqueous	MTARRLGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQQAVEVRR*
Ga0099848_11687913	3300007541	Aqueous	MNPRVIGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRR*
Ga0099846_10822173	3300007542	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRNER*
Ga0099846_11784883	3300007542	Aqueous	VTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVE
Ga0099846_12106871	3300007542	Aqueous	DVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRK*
Ga0070751_10520841	3300007640	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSAHSGTQQVVEVRR*
Ga0070751_12835853	3300007640	Aqueous	VCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRNER*
Ga0099850_10709212	3300007960	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHNGSTHSGTQRVVEVRR*
Ga0099850_13797241	3300007960	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEVRR*
Ga0099850_13855762	3300007960	Aqueous	RVIGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRR*
Ga0099850_13926572	3300007960	Aqueous	MTARRLGDACAFVIAAWAFAMLGIEAAAHNGSTHSGTQRVVEVRR*
Ga0099850_14113472	3300007960	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHSGSTHSGTQRVVEVRR*
Ga0108970_108930193	3300008055	Estuary	MTPHRLADLCAALIAAWTFAMLGIEVAAHHGPTHSGTQEAVRHD*
Ga0114337_10854784	3300008262	Freshwater, Plankton	MMTPHRLGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVMRHD*
Ga0114363_10032964	3300008266	Freshwater, Plankton	LIVTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPVVEVRK*
Ga0114363_11108184	3300008266	Freshwater, Plankton	MMTPHRLGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVVRHD*
Ga0102960_11901144	3300009000	Pond Water	MKARRLGDLCAALIAAWAFAMLGIEAGAHHGTTHSGTQPVVEVRK*
Ga0102830_11940831	3300009059	Estuarine	RHAGRAHTGSACGGLMMTPHRLGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVVRHD
Ga0127391_10411053	3300009450	Meromictic Pond	MTARRLGDVCAFVIAAWAFAMLGIEAGAHHGSTHSGTQRVVEARR*
Ga0127412_100231063	3300009492	Methane Seep	MKARRLGDLCAALIAAWAFAMLGIEAGAHHGSTHSGTQPAVEVRK*
Ga0132221_10012031	3300009911	Meromictic Pond	MTARRLGDVCAFVIAAWAFAMLGIEAGAHHGSTHSGTQPAVEVRR*
Ga0129348_10635814	3300010296	Freshwater To Marine Saline Gradient	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEVRNER*
Ga0129333_100040298	3300010354	Freshwater To Marine Saline Gradient	MMTPKRLGDICAALIAAWAMAMIGIEAGAHHSPTHSGTQEVVRHD*
Ga0129333_107367773	3300010354	Freshwater To Marine Saline Gradient	AHACQAGGGLIVTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPVVEVRK*
Ga0129333_108119863	3300010354	Freshwater To Marine Saline Gradient	AGSPCGGLIVTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRR*
Ga0129333_112099472	3300010354	Freshwater To Marine Saline Gradient	MTPKRIGDVCAFVIAAWAFAMIGLEVGAHHAPTHSGTQEVVR*
Ga0129333_112489993	3300010354	Freshwater To Marine Saline Gradient	MMTPHRLGDICAAVIAAWVFAMIGLEVGAHHAPTHSGTQEVVRHD*
Ga0136549_100070636	3300010389	Marine Methane Seep Sediment	MTPHRLGNICAAVIAAWAFAMIGLEVGAHHSPTHSGTQEVAR*
Ga0136549_1000898216	3300010389	Marine Methane Seep Sediment	MKARRLGDLCAALIAAWAFAMLGIEAGAHHGTTHSGTQPAVEVRK*
Ga0136549_101131482	3300010389	Marine Methane Seep Sediment	MMTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEVRK*
Ga0181359_11119342	3300019784	Freshwater Lake	MTPRRLGDVCSFVIAVWAFAMIGLDVNAHHGRTHSGSQPLVEVKR
Ga0213866_100184868	3300021425	Seawater	MTAKRVADACAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRR
Ga0222719_103309353	3300021964	Estuarine Water	MKARRLGDLCAALIAAWAFAMLGIEAGAHHGSTHSGTQPVVEVRK
Ga0212025_10649751	3300022057	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGAQRVVEVRR
Ga0212029_10183812	3300022063	Aqueous	MTPKRVSEVCAFVIAAWAFAMIGLEVGAHHAPTHSGTQEVVRHD
Ga0212029_10254462	3300022063	Aqueous	MNPRVIGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPMVEVRK
Ga0212031_10150784	3300022176	Aqueous	VTNHISNICAAIIAAWAFAAIGIEAGAHHQPTHSGTQQVVRK
Ga0212031_10215723	3300022176	Aqueous	VTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEARR
Ga0212031_10243392	3300022176	Aqueous	MTPKRVSDVCAFVIAAWAFAMIGLEVGAHHAPTHSGTQEVVRHD
Ga0196905_10011459	3300022198	Aqueous	MTPKRIGDVCAFVIAAWAFAMIGLEVGAHHQPTHSGTQEVVR
Ga0196905_10095428	3300022198	Aqueous	MTPKRIGDVCAFVIAAWAFAMIGLEVGAHHAPTHSGTQEVARHD
Ga0196905_10115333	3300022198	Aqueous	VTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRR
Ga0196905_10141177	3300022198	Aqueous	MNPRVIGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRR
Ga0196905_10222552	3300022198	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEVRR
Ga0196905_10387044	3300022198	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEVAAHHGSTHSGTQPMVEVRK
Ga0196905_11074801	3300022198	Aqueous	TTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRK
Ga0196905_11504771	3300022198	Aqueous	MTARRLGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQQAVEVRR
Ga0196901_100891010	3300022200	Aqueous	VTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEVRR
Ga0196901_10786062	3300022200	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEATAHHGSTHSGTQRVVEVRR
Ga0196901_11338892	3300022200	Aqueous	MTNHISNICAAIIAAWAFAAIGIEAGAHHQPTHSGTQQVVRK
Ga0196901_12457511	3300022200	Aqueous	VCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQAVEVRR
Ga0208161_10135071	3300025646	Aqueous	LGDVCAFVIAAWAFAMLGIEAAANHGSTHSGTQRVVEVRR
Ga0208161_10194554	3300025646	Aqueous	VTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRK
Ga0208161_10404272	3300025646	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGAQQVVEVRR
Ga0208161_10965481	3300025646	Aqueous	DVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRNER
Ga0208161_11130702	3300025646	Aqueous	MTARRLGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRR
Ga0208160_10134724	3300025647	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRNER
Ga0208160_11684982	3300025647	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRR
Ga0208428_11530633	3300025653	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQAVEVRR
Ga0208795_11205013	3300025655	Aqueous	VTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVVEVRNGR
Ga0208898_10598543	3300025671	Aqueous	MTAKRVADACAFVIAAWAFAMLGIEAAAHHGSTHSGTQQAVEVRR
Ga0208162_10009138	3300025674	Aqueous	MTARRLGDVCALVIAAWAFAMLGIEATAHHGSTHSGTQRVVEVRR
Ga0208019_10941381	3300025687	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHNGSTHSGTQRVVEVRR
Ga0208019_11101102	3300025687	Aqueous	MTARRLGDACAFVIAAWAFAMLGIEAAAHNGSTHSGTQRVVEVRR
Ga0208150_10298912	3300025751	Aqueous	MTARRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQRVMEVRK
Ga0208644_10022298	3300025889	Aqueous	MMTPHRLGDICAALIAAWAFAMIGLEVGAHHQPTHSGTQQVVRHD
Ga0208644_11541304	3300025889	Aqueous	MTPNRLANICAAIIAAWAFAMIGIEGAAHHQPTHSGTQEYVKHD
Ga0208644_12124421	3300025889	Aqueous	MMTPNRLGDICAALIAAWAFAMIGIEAGAHHSPTHSGTQEVVRHD
Ga0208644_12335802	3300025889	Aqueous	MTPRRLGDVCSFVIAAWAFAMIGLDVNAHHGRTHSGSQPVVEVRR
Ga0209990_100557612	3300027816	Freshwater Lake	VTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPVVEVRK
Ga0209990_100672576	3300027816	Freshwater Lake	LGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVMRHD
Ga0209990_104795192	3300027816	Freshwater Lake	MMTPRRLGDICSFVIAAWVFAMIGIEAGAHHSPTHSGTQQVVRHD
Ga0307380_107289243	3300031539	Soil	MGTRRLGDICAAVIAAWALAMIGIEAGAHHSPTHSGTQEVVRHD
Ga0307380_107483732	3300031539	Soil	MNARQIGDLCSLVIAAWAFAMIGIEAGAHHQPTHSGTQEVVR
Ga0307379_106076972	3300031565	Soil	MNARQIGDLCSLVIAAWAFAMIGIEAGAHHQPTHSGTQEVAR
Ga0307378_110417762	3300031566	Soil	MGTRRLGDICAAVIAAWALAMIGIEAGAHHSPTHSGTQEVVR
Ga0307376_102304253	3300031578	Soil	MNARQIGDLCSLVIAAWAFAMIGLEVGAHHQPTHSGTQEVAR
Ga0307375_105040252	3300031669	Soil	MNARQIGDLCSLVIAAWAFAMIGLEVGAHHQPTHSGTQEVVR
Ga0315907_100104985	3300031758	Freshwater	LIVTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQPVVEVRK
Ga0315907_101149734	3300031758	Freshwater	MMTPHRLGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVVRHD
Ga0315899_1000125322	3300031784	Freshwater	MMTPHRFGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVMRHD
Ga0315904_108928724	3300031951	Freshwater	FGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVMRHD
Ga0334982_0032168_2443_2577	3300033981	Freshwater	MNARQIGDLCSLVIAAWAFAMIGLEVGAHHAPTHSGTQEVVRHD
Ga0334987_0124373_1790_1933	3300034061	Freshwater	GLMMTPHRLGDICAALIAAWAFAMLGIEAGAHHSPTHSGTQQVVRHD
Ga0310127_037794_1589_1726	3300034072	Fracking Water	MNPRVIGDACAYMIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRR
Ga0310130_0001378_3078_3221	3300034073	Fracking Water	LIVTTRRLGDVCAFVIAAWAFAMLGIEAAAHHGSTHSGTQQVVEVRK
Ga0310130_0009574_2756_2893	3300034073	Fracking Water	MNPRVIGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRK
Ga0310130_0023731_348_485	3300034073	Fracking Water	MTARRLGDACAFVIAAWAFAMLGIEAAAHHGSTHSGTQPAVEVRR
Ga0310130_0092871_141_284	3300034073	Fracking Water	MTARRLGDVCAFVIAAWAFAMLGIEAGAHHGSTHSGTQQVVEVRNER
Ga0310130_0193553_81_218	3300034073	Fracking Water	MINHISNICAAIIAIWAFAAIGIEAGAHHQPTHSGTQTAIRYDHN
Ga0310143_01009_9871_10005	3300034523	Fracking Water	MNARQIGDLCSLVITAWAFAMIGLEVGAHHAPTHSGTQEVVRHD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068613

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences