Metagenome / Metatranscriptome Family F068364

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068364
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	38 residues
Representative Sequence	MSRLRKIAEIPAGSWTKWVVVGFWVVVLVLAFPLSKKL
Number of Associated Samples	93
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.39 %
% of genes near scaffold ends (potentially truncated)	95.16 %
% of genes from short scaffolds (< 2000 bps)	93.55 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.419 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.129 % of family members)
Environment Ontology (ENVO)	Unclassified (59.677 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (44.355 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.45% β-sheet: 0.00% Coil/Unstructured: 54.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00196	GerE	21.77
PF14026	DUF4242	9.68
PF03176	MMPL	4.03
PF01569	PAP2	2.42
PF00072	Response_reg	1.61
PF04264	YceI	1.61
PF02687	FtsX	1.61
PF03706	LPG_synthase_TM	0.81
PF07366	SnoaL	0.81
PF09348	DUF1990	0.81
PF08352	oligo_HPY	0.81
PF01872	RibD_C	0.81
PF00069	Pkinase	0.81
PF01934	HepT-like	0.81
PF00441	Acyl-CoA_dh_1	0.81
PF00083	Sugar_tr	0.81
PF13577	SnoaL_4	0.81
PF06897	DUF1269	0.81
PF13401	AAA_22	0.81
PF12146	Hydrolase_4	0.81
PF13006	Nterm_IS4	0.81
PF00027	cNMP_binding	0.81
PF00892	EamA	0.81
PF13239	2TM	0.81
PF05598	DUF772	0.81
PF00583	Acetyltransf_1	0.81
PF13359	DDE_Tnp_4	0.81
PF14690	zf-ISL3	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	4.03
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	4.03
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.23
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	1.61
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.81
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.81
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.81
COG2361	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.81
COG2445	Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 family	General function prediction only [R]	0.81
COG4803	Uncharacterized membrane protein	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.42 %
Unclassified	root	N/A	47.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.42 %
Unclassified	root	N/A	47.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.42 %
Unclassified	root	N/A	47.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	31.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.55 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.61 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.61 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.61 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.61 %
Jiangellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales	0.81 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.81 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.81 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.61 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.61 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples	0.81 %
Jiangellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae	0.81 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.81 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.81 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.81 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.81 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.61 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.61 %
Jiangella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella	0.81 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.81 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.81 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.81 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.81 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.81 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.61 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.61 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.81 %
Jiangella muralis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella muralis	0.81 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.81 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.81 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.81 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.81 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.58 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.61 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.61 %
Streptomyces sp. NRRL S-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NRRL S-4	0.81 %
Jiangella muralis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella muralis	0.81 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.81 %
Actinomadura madurae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	0.81 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.81 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.81 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.81 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.81 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101510586	Not Available	710	Open in IMG/M
3300005468\|Ga0070707_100147067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2293	Open in IMG/M
3300005471\|Ga0070698_100719213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	941	Open in IMG/M
3300005764\|Ga0066903_106618966	Not Available	603	Open in IMG/M
3300005764\|Ga0066903_107554752	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300005841\|Ga0068863_101640486	Not Available	652	Open in IMG/M
3300005983\|Ga0081540_1250906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	617	Open in IMG/M
3300006031\|Ga0066651_10764728	Not Available	522	Open in IMG/M
3300009545\|Ga0105237_10752868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	981	Open in IMG/M
3300009839\|Ga0116223_10386892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	824	Open in IMG/M
3300010333\|Ga0134080_10642135	Not Available	521	Open in IMG/M
3300010359\|Ga0126376_11118418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	797	Open in IMG/M
3300010361\|Ga0126378_12058400	All Organisms → cellular organisms → Bacteria → Terrabacteria group	651	Open in IMG/M
3300010361\|Ga0126378_12562107	Not Available	583	Open in IMG/M
3300010361\|Ga0126378_12650590	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300010361\|Ga0126378_12904042	Not Available	547	Open in IMG/M
3300010376\|Ga0126381_101004973	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300010376\|Ga0126381_101519424	Not Available	968	Open in IMG/M
3300010376\|Ga0126381_101816122	Not Available	880	Open in IMG/M
3300010376\|Ga0126381_102413365	Not Available	754	Open in IMG/M
3300010376\|Ga0126381_104614111	Not Available	531	Open in IMG/M
3300010379\|Ga0136449_101244929	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300010398\|Ga0126383_10503978	Not Available	1269	Open in IMG/M
3300011085\|Ga0138581_1085933	Not Available	649	Open in IMG/M
3300012200\|Ga0137382_10494011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	869	Open in IMG/M
3300012201\|Ga0137365_10813198	Not Available	682	Open in IMG/M
3300012205\|Ga0137362_10105087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2382	Open in IMG/M
3300012354\|Ga0137366_10477565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	902	Open in IMG/M
3300012356\|Ga0137371_10150926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1821	Open in IMG/M
3300012960\|Ga0164301_11026577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300012971\|Ga0126369_10689680	Not Available	1098	Open in IMG/M
3300012971\|Ga0126369_11787254	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300012977\|Ga0134087_10063848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1479	Open in IMG/M
3300015371\|Ga0132258_13601361	Not Available	1059	Open in IMG/M
3300016270\|Ga0182036_11286740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300016319\|Ga0182033_11232989	Not Available	671	Open in IMG/M
3300016341\|Ga0182035_12054217	Not Available	519	Open in IMG/M
3300016357\|Ga0182032_10742914	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300016357\|Ga0182032_10793014	Not Available	800	Open in IMG/M
3300016357\|Ga0182032_12071031	Not Available	500	Open in IMG/M
3300016371\|Ga0182034_10987667	Not Available	727	Open in IMG/M
3300016404\|Ga0182037_10944079	Not Available	749	Open in IMG/M
3300016445\|Ga0182038_10320998	Not Available	1273	Open in IMG/M
3300016445\|Ga0182038_10669286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300017955\|Ga0187817_10105471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1776	Open in IMG/M
3300017955\|Ga0187817_10381990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	899	Open in IMG/M
3300017955\|Ga0187817_10901509	Not Available	565	Open in IMG/M
3300017961\|Ga0187778_10491168	Not Available	814	Open in IMG/M
3300018001\|Ga0187815_10067094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1509	Open in IMG/M
3300018085\|Ga0187772_10109052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1792	Open in IMG/M
3300018085\|Ga0187772_10428976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	924	Open in IMG/M
3300025915\|Ga0207693_11002536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	638	Open in IMG/M
3300025928\|Ga0207700_11715159	Not Available	554	Open in IMG/M
3300027812\|Ga0209656_10454767	Not Available	566	Open in IMG/M
3300027874\|Ga0209465_10641014	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031543\|Ga0318516_10570715	Not Available	647	Open in IMG/M
3300031544\|Ga0318534_10260331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1000	Open in IMG/M
3300031549\|Ga0318571_10462942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella muralis	505	Open in IMG/M
3300031561\|Ga0318528_10765978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300031564\|Ga0318573_10296838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	865	Open in IMG/M
3300031572\|Ga0318515_10273509	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300031572\|Ga0318515_10681271	Not Available	544	Open in IMG/M
3300031668\|Ga0318542_10157137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1133	Open in IMG/M
3300031680\|Ga0318574_10606800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NRRL S-4	642	Open in IMG/M
3300031681\|Ga0318572_10550698	All Organisms → cellular organisms → Bacteria → Terrabacteria group	687	Open in IMG/M
3300031681\|Ga0318572_10903776	Not Available	524	Open in IMG/M
3300031681\|Ga0318572_10949451	Not Available	511	Open in IMG/M
3300031682\|Ga0318560_10811437	Not Available	505	Open in IMG/M
3300031723\|Ga0318493_10660687	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300031744\|Ga0306918_10442226	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300031748\|Ga0318492_10242164	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300031751\|Ga0318494_10084057	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300031751\|Ga0318494_10118809	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1471	Open in IMG/M
3300031751\|Ga0318494_10731894	Not Available	579	Open in IMG/M
3300031765\|Ga0318554_10058367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2123	Open in IMG/M
3300031769\|Ga0318526_10236909	Not Available	746	Open in IMG/M
3300031777\|Ga0318543_10523424	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031778\|Ga0318498_10484980	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300031779\|Ga0318566_10286543	Not Available	815	Open in IMG/M
3300031782\|Ga0318552_10721536	Not Available	509	Open in IMG/M
3300031796\|Ga0318576_10536163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300031797\|Ga0318550_10520491	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031797\|Ga0318550_10580136	Not Available	539	Open in IMG/M
3300031798\|Ga0318523_10215086	Not Available	960	Open in IMG/M
3300031798\|Ga0318523_10607422	Not Available	538	Open in IMG/M
3300031805\|Ga0318497_10222013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1046	Open in IMG/M
3300031805\|Ga0318497_10846303	Not Available	513	Open in IMG/M
3300031835\|Ga0318517_10073968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1466	Open in IMG/M
3300031859\|Ga0318527_10061215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1491	Open in IMG/M
3300031880\|Ga0318544_10405654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300031893\|Ga0318536_10652363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300031896\|Ga0318551_10343610	Not Available	844	Open in IMG/M
3300031910\|Ga0306923_10161400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura madurae	2560	Open in IMG/M
3300031910\|Ga0306923_10403991	Not Available	1554	Open in IMG/M
3300031910\|Ga0306923_11192645	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300031912\|Ga0306921_11208527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	841	Open in IMG/M
3300031946\|Ga0310910_10307853	Not Available	1247	Open in IMG/M
3300031947\|Ga0310909_10791905	Not Available	783	Open in IMG/M
3300031954\|Ga0306926_10058819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4618	Open in IMG/M
3300031954\|Ga0306926_11578457	Not Available	754	Open in IMG/M
3300032001\|Ga0306922_10015933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7417	Open in IMG/M
3300032001\|Ga0306922_10417390	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300032001\|Ga0306922_10745003	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300032008\|Ga0318562_10209904	Not Available	1128	Open in IMG/M
3300032010\|Ga0318569_10462469	Not Available	592	Open in IMG/M
3300032039\|Ga0318559_10026994	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300032039\|Ga0318559_10469046	Not Available	587	Open in IMG/M
3300032041\|Ga0318549_10431844	Not Available	593	Open in IMG/M
3300032043\|Ga0318556_10492504	Not Available	641	Open in IMG/M
3300032052\|Ga0318506_10356300	Not Available	649	Open in IMG/M
3300032054\|Ga0318570_10458480	Not Available	582	Open in IMG/M
3300032067\|Ga0318524_10309355	Not Available	818	Open in IMG/M
3300032068\|Ga0318553_10207746	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300032068\|Ga0318553_10674568	Not Available	541	Open in IMG/M
3300032076\|Ga0306924_10400750	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300032089\|Ga0318525_10242120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	927	Open in IMG/M
3300032160\|Ga0311301_10239934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3012	Open in IMG/M
3300032180\|Ga0307471_103557398	Not Available	551	Open in IMG/M
3300032261\|Ga0306920_100943716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1259	Open in IMG/M
3300032261\|Ga0306920_101927855	Not Available	830	Open in IMG/M
3300032783\|Ga0335079_11748546	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300032805\|Ga0335078_11348577	Not Available	810	Open in IMG/M
3300033289\|Ga0310914_11316923	Not Available	625	Open in IMG/M
3300033805\|Ga0314864_0175522	Not Available	553	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.77%
Host-Associated	Host-Associated	3.23%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.74%
Aquatic	Environmental → Aquatic	4.03%
Plants	Host-Associated → Plants	3.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.74%
Freshwater	Environmental → Aquatic → Freshwater	4.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.26%
Loam	Environmental → Terrestrial → Soil → Loam	5.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.03%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.16%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.48%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.03%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.23%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.23%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011085	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1015105861	3300000364	Soil	MGIARRAAEIPAGGWTKWLVLGFWLVVVVVAFPLSGK
Ga0070707_1001470672	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLKKIAEIPAGSWTKWVVVGFWVVVLVLAFPLSKKLTG
Ga0070698_1007192133	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSRIRKAAEIPAGSWTKWVVVGFWVAVLLIALPLAGKLKG
Ga0066903_1066189662	3300005764	Tropical Forest Soil	MSRLSKIAEIPAGSWTKWVVVGFWVVVLVITFPLSTKLMGAEK
Ga0066903_1075547521	3300005764	Tropical Forest Soil	MNKVARRLAEIPAGSWTKWVVMGFWVAVLVVALPLA
Ga0068863_1016404863	3300005841	Switchgrass Rhizosphere	MKNVARRFAEIPVGSWTKWVVVGFWVVAVAVAYPLSGK
Ga0081540_12509062	3300005983	Tabebuia Heterophylla Rhizosphere	MSNVARRLAEIPAGSWTKWLVVGFWVVVVAVAYPLAG
Ga0066651_107647281	3300006031	Soil	MNVARKIVEFPAGSWTKWLVVGFWVVVLVIAFPLSSKL
Ga0105237_107528681	3300009545	Corn Rhizosphere	MGSLRRIAEIPAGSWTKWLVVGFWLVVLILAFPLSTKLTGAE
Ga0116223_103868922	3300009839	Peatlands Soil	MSRLRKIAEIPAGSWTKWIVVGFWVLMLVILFPLSA
Ga0134080_106421351	3300010333	Grasslands Soil	MNVARKIVEFPAGSWTKWLVVGFWVVVLVIAFPLSSKLTGA
Ga0126376_111184182	3300010359	Tropical Forest Soil	MSKVARRLAEIPAGSWTKWVVMGFWVAVIVVAFPLAG
Ga0126378_120584001	3300010361	Tropical Forest Soil	MNKVARRLAEIPAGSWTKWVVMGFWVAVIVVAFPLA
Ga0126378_125621072	3300010361	Tropical Forest Soil	MSRVRRIAEVPTGSRAKWLVVGFWVVVLVDSFPLSK
Ga0126378_126505901	3300010361	Tropical Forest Soil	MSRLGKIAEIPAGSWTKWVVVGFWVVVLVLAFPLQKKLMGAEK
Ga0126378_129040421	3300010361	Tropical Forest Soil	MSGIRRIAEFPAGSWTKWVVVGFWVVVLVITFPLSKKLNH
Ga0126381_1010049733	3300010376	Tropical Forest Soil	MNKVARRLTEIPAGSWTKWVVVGFWVVVLVITFPLSKKLNHA
Ga0126381_1015194242	3300010376	Tropical Forest Soil	MNNTVRRLAEIPAGSWTKWVVVGFWVVVLVLAFPLQK
Ga0126381_1018161221	3300010376	Tropical Forest Soil	MTKAARRLAEIPGGSWTKWLVMGFWVAVIVVALPL
Ga0126381_1024133653	3300010376	Tropical Forest Soil	MNRLRKIAEIPAGSWTKWVVVGVWVVVLVIALPLSSKLTGA
Ga0126381_1046141112	3300010376	Tropical Forest Soil	MNKVARRLAEIPAGSWTKWVVVAFWLVVLVIALPLSS
Ga0136449_1012449292	3300010379	Peatlands Soil	MNSVKKLAEIPSGSWTKWIVVGFWLVVLVITLPLSSKLTGA*
Ga0126383_105039782	3300010398	Tropical Forest Soil	MSTARRIAEIPAGSWTRWVVVGFWLVMLVVMFPLSG
Ga0138581_10859331	3300011085	Peatlands Soil	MSRLRKIAEIPAGSWTKWVVVGFWVAVLVVMFSLSAKLMGAEKND
Ga0137382_104940112	3300012200	Vadose Zone Soil	MSRARRIAEIPAGSWTKWLVVGFWLVVVVVAFPLSNKLMGA
Ga0137365_108131981	3300012201	Vadose Zone Soil	MSRARRIAEIPAGSWTKWLVVGFWLVVVVVAFPLSNKLMGAEK
Ga0137362_101050874	3300012205	Vadose Zone Soil	MSKLRRIAEIPAGSWTKWVVVGFWVVVLVLALPLSGVPAL*
Ga0137366_104775651	3300012354	Vadose Zone Soil	MSGLRRIVEIPAGSWTKWLVVGFWVVVLVVAFPLS
Ga0137371_101509261	3300012356	Vadose Zone Soil	MSRARRIAEIPAGSWTKWLVVGFWLVVEVVAFPLSNKLMGAEK
Ga0164301_110265771	3300012960	Soil	MSKARRIAEIPAGSWTKWLVVGLWAVVLIISFPLA
Ga0126369_106896802	3300012971	Tropical Forest Soil	MNKVARRLAEIPAGSWTKWVVMGFWVAVIVVAFPL
Ga0126369_117872542	3300012971	Tropical Forest Soil	MNGVRKLAEIPAGSWTKWVVLGFWVIVLVITLPLSSKLI
Ga0134087_100638482	3300012977	Grasslands Soil	MNVARKIVEFPAGSWTKWLVVGFWVVVLVIEVISAK*
Ga0132258_136013611	3300015371	Arabidopsis Rhizosphere	MKNVAQRFAEIPVGSWTKWVVVGFWVVAVAVAYPLSGKLTGA
Ga0182036_112867402	3300016270	Soil	MSRLSKIAEIPAGSWTKWVVVGFWVVVLVLAFPLQ
Ga0182033_112329892	3300016319	Soil	VSTLRKIAEIPAGSWTKWLVVGFWVAVLAVASPLAIKL
Ga0182035_120542171	3300016341	Soil	MSKLGKIAEIPAGRWTKWLVVGFWVVMVAVLYPLSSKLTAA
Ga0182032_107429141	3300016357	Soil	MSKLSKIAEIPAGSWTKWLVVGVWLVVVAVLYPLSTKLMGAEKN
Ga0182032_107930142	3300016357	Soil	MSRLRTIAAIPAGSWTKWAVVGFWLVVLVVAHPLQSKLTALAGEMA
Ga0182032_120710312	3300016357	Soil	MNKVARRLAEIPAGSWTKWVVMGFWVAVIVVALPLAGKLQHAYNNN
Ga0182034_109876672	3300016371	Soil	MNRLRKIAEIPAGSWTKWVVVGVWVVVLVIALPLSS
Ga0182037_109440793	3300016404	Soil	VSTLRKIAEIPTGSGTKWLVVGFWVVVLVAAFPLSK
Ga0182038_103209982	3300016445	Soil	MSRLRRVAEIPAGSWTKWVVVGFWLAVLVLALPLSSKLSG
Ga0182038_106692863	3300016445	Soil	MNKVGRRLVGIPAGSWTKWLVVGFWLVVVVVAYPLQSKLSGVEKAA
Ga0187817_101054714	3300017955	Freshwater Sediment	MSRLGKIAEIPAGSWTKWVVVGFWVLMLVILFPLSTKLN
Ga0187817_103819901	3300017955	Freshwater Sediment	MSRLRKIAEIPAGSWTKWLVVGVWLVVIVLAFPLSSKLTGA
Ga0187817_109015091	3300017955	Freshwater Sediment	MSRLRKIAEIPAGSWTKWVVVGFWVVVLVLAFPLSKKL
Ga0187778_104911681	3300017961	Tropical Peatland	MSRLRTIAAIPAGSWTKWLAVGFWVAVLVVMFPLSAKL
Ga0187815_100670941	3300018001	Freshwater Sediment	MSRLGKIAEIPAGSWTKWIVVGFWVVVLVLAFPLSKKLT
Ga0187772_101090521	3300018085	Tropical Peatland	MSRLRKITLIPAGSWTQRVVVGSWVLMLVTLSRCQHS
Ga0187772_104289762	3300018085	Tropical Peatland	MSRLRNVAEIPAGSWTKWVVVGFWVVVLVVMFPLS
Ga0207693_110025361	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLRKIAEFPAGSWTKWVVVGVWVVVLVILFPLSKKI
Ga0207700_117151591	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKNVARRFAEIPAGSWTKWVVVGFWVVAVAVAYPLSGKLT
Ga0209656_104547672	3300027812	Bog Forest Soil	MSRLGKIAEIPAGSWTKWVVVGFWVLMLVILFPLSTKLNGAEKNDAK
Ga0209465_106410141	3300027874	Tropical Forest Soil	MKNVARRLTEIPAGSWTKWVVVGFWLVVLVIAAPLS
Ga0318516_105707151	3300031543	Soil	MSRLRKIAEIPAGSWTKWLVVGCWLVVVVVAYPLQSKLMG
Ga0318534_102603312	3300031544	Soil	MSRLRKIAEIPAGSWTKWLVVGFWLVVVVVAYPLQSKLSGVEKAA
Ga0318571_104629421	3300031549	Soil	MSKLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLSSKLTG
Ga0318528_107659781	3300031561	Soil	MSSLRRIAEIPAGSWTKWVVVGFWLVILVLAFPLSSKL
Ga0318573_102968381	3300031564	Soil	MSKLSKIAEIPAGSWTKWLVVGVWLVVVAVLYPLSTK
Ga0318515_102735093	3300031572	Soil	MSNVARRLAEIPAGSWTKWLVVGFWVVVVAVAYPL
Ga0318515_106812711	3300031572	Soil	MSKLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLSTRLT
Ga0318542_101571372	3300031668	Soil	MSRLSKIAEIPAGSWTKWVVVGFWVVMLVILAPLSTKLMGA
Ga0318574_106068001	3300031680	Soil	VRRIAEIPSGSRTRWLVVGFWLVVVVLAGPLSGKLT
Ga0318572_105506981	3300031681	Soil	MSRLSRIAAIPAGSWTKWVVMGFWLVVLVVAYPLSSK
Ga0318572_109037761	3300031681	Soil	MSRLRRIAEIPAGSWTRWVVVGFWLAVLVLALPLSS
Ga0318572_109494511	3300031681	Soil	MNRLRKIAEIPAGSWTKWVVVGVWAVVLVIALPLS
Ga0318560_108114371	3300031682	Soil	MSKLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLSSKLT
Ga0318493_106606871	3300031723	Soil	VSTLRKIAEIPAGSWTKWLVVGFWVAVLAVASPLAIKLKHAEKN
Ga0306918_104422261	3300031744	Soil	MSRLSKIAEIPAGSWTKWVVVGFWVVVLVLAFPLQKKLM
Ga0318492_102421643	3300031748	Soil	MSKLSKIAEIPAGSWTKWLVVGVWVVVVAVLYPLSTKLM
Ga0318494_100840571	3300031751	Soil	MNGVKKLADIPAGSWTKWVVMGFWVVVLVIALPLSSKLMG
Ga0318494_101188092	3300031751	Soil	MSRLRKIAEIPAGSWTKWLVVGFWLVVVVVAYPLQSKLSG
Ga0318494_107318942	3300031751	Soil	MSRLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLSS
Ga0318554_100583671	3300031765	Soil	MSKLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLST
Ga0318526_102369091	3300031769	Soil	MSKLRRIAEIPAGTWTKWVVVGFWLAVLVLALPLSS
Ga0318543_105234242	3300031777	Soil	MNGVKKLAEIPAGSWTKWVVLGFWVVVLVITLPLSSKLM
Ga0318498_104849801	3300031778	Soil	MNGVKKLADIPAGSWTKWVVMGFWVVVLVIALPLSS
Ga0318566_102865431	3300031779	Soil	MNKVGRRLAEIPAGSWTKWIVVGFWLVVLLIALPLSGKL
Ga0318552_107215361	3300031782	Soil	MSRLRKIAEIPAGSWTKWLVVGLWLVVVAVAYPLQS
Ga0318576_105361631	3300031796	Soil	MSSLRRIAEIPAGSWTKWVVVGFWLVILVLAFPLSS
Ga0318550_105204911	3300031797	Soil	MNGVKKLADIPAGSWTKWVVMGFWVVVLVIALPLSSK
Ga0318550_105801361	3300031797	Soil	MNKVGRRLAGIPAGSWTKWLVVGFWVVIFAVAYPLAGKLG
Ga0318523_102150862	3300031798	Soil	MSRLRNIAEIPAGSWTKWVVVGFWVVVLVLAFPLQKKLTGAEKN
Ga0318523_106074221	3300031798	Soil	MSKLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLSTRL
Ga0318497_102220133	3300031805	Soil	MSKLSKIAEIPAGSWTKWLVVGVWVVVVAVLYPLSTK
Ga0318497_108463032	3300031805	Soil	MSRPRNIAEIPAGSWTKWVVVGFWVVVLVLAFPLS
Ga0318517_100739684	3300031835	Soil	MSKVARRLAGIPAGSWTKYAVVGFWVVVLVVAFPLAGKLGHAYKN
Ga0318527_100612151	3300031859	Soil	MSKAARRLAEIPGGSWTKWLVMGFWVAVMVVAFPLSAK
Ga0318544_104056542	3300031880	Soil	MSSLRKIAEIPAGSWTKWVVVGFWLVILVLAFPLS
Ga0318536_106523631	3300031893	Soil	MSWLRKAAEIPAGSWTKWVVVGFWVAVLVITFPLAG
Ga0318551_103436102	3300031896	Soil	MNGLKKIAEIPAGSWTKWVVVGFWVVVLVLAFPLQKKLTGAE
Ga0306923_101614002	3300031910	Soil	MNGLKKIAEIPAGSWTKWVVVGFWVVVLVLAFPLSKKL
Ga0306923_104039911	3300031910	Soil	MSKLGKIAEIPAGSWTKWLVVGFWVVMVAVLYPLSSKLTAA
Ga0306923_111926451	3300031910	Soil	MSKVVRRLAEIPAGSWTKWVVMGFWVAAVVVALPLAGKLMHA
Ga0306921_112085272	3300031912	Soil	MSKLGKIAEIPAGRWTKWLVVGFWVVMVAVLYPLSSKL
Ga0310910_103078531	3300031946	Soil	MSKLRRIAEIPAGTWTKWVVVGFWLAVLVLALPLSSKL
Ga0310909_107919051	3300031947	Soil	MSAVARRLAGIPAGSWTKWLVVGFWVVVVVAAYPLQNK
Ga0306926_100588191	3300031954	Soil	MSRLRTIAAIPAGSWTKWVVVGFWLVVLVVAYPPQS
Ga0306926_115784572	3300031954	Soil	MSRLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLSSTL
Ga0306922_100159337	3300032001	Soil	MSRLSKIAEIPAGSWTKWVVVGFWVVVLVLAFPLQK
Ga0306922_104173902	3300032001	Soil	MSLRRIAEIPAGSWTKWVVVGFWLVILVLAFPLSS
Ga0306922_107450031	3300032001	Soil	MDKVARRIAGIPAGSWTKWLVVGFWVVVVLVAYPL
Ga0318562_102099042	3300032008	Soil	MSKLRRIAEIPAGTWTKWVVVGFWLAVLVLALPLSSK
Ga0318569_104624691	3300032010	Soil	MNKVGRRLAGIPAGSWTKWLVVGFWVVIFAVAYPLAGKLGH
Ga0318559_100269941	3300032039	Soil	MSAVARRLAGIPAGSWTKWLVVGFWVVVVVAAYPLSGK
Ga0318559_104690462	3300032039	Soil	MSTLRKIAEIPAGSWIKWLVVGFWVAVLVAAFPLSK
Ga0318549_104318441	3300032041	Soil	MNKVGRRLAEIPAGSWTKWIVVGFWLVVLLIALPLS
Ga0318556_104925042	3300032043	Soil	VSTLRKIAEIPAGSWTKWLVVGFWVAVLAVASPLAIKLKH
Ga0318506_103563001	3300032052	Soil	MSKVVRRLAEIPAGSWTKWVVMGFWLVVVVVAAPLAG
Ga0318570_104584801	3300032054	Soil	MNKVGRRLVGIPAGSWTKWLVVGFWVVIFAVAYPLA
Ga0318524_103093553	3300032067	Soil	MNKVGRRLAEIPAGSWTKWLVVGFWVVIFVVAYPLSG
Ga0318553_102077461	3300032068	Soil	VSTLRRIAEIPTGSWTKWLVVGFWVVVLVVAFPLSKKLNGAE
Ga0318553_106745681	3300032068	Soil	MNRLRKIAEIPAGSWTKWVVVGVWAVVLVIALPLSSKLT
Ga0306924_104007502	3300032076	Soil	MSRLRNIAEIPAGSWTKWVVVGFWVVVLVLAFPLSKKLTGA
Ga0318525_102421202	3300032089	Soil	MSRLSRIAAIPAGSWTKWVVMGFWLVVLVVAYPLSGKLT
Ga0311301_102399344	3300032160	Peatlands Soil	MSRLRKIAEIPAGSWTKWIVVGFWVLMLVILFPLSAKLQGAEK
Ga0307471_1035573981	3300032180	Hardwood Forest Soil	MSKIARRLAEIPAGSWTKWLVVGFWLVVVVVAYPLQSKLNGVEK
Ga0306920_1009437161	3300032261	Soil	MSTLKKLAEIPAGSWTKWVVVGFWVVVLVLAFPLSKKLTGAEK
Ga0306920_1019278551	3300032261	Soil	MNNTARRLAEIPAGSWTKWVVVGFWVLMLVLLYPLSAKLQH
Ga0335079_117485462	3300032783	Soil	MNRIGRLAEIPAGSWTKWVVVGFWVVVLVIMAPLSSK
Ga0335078_113485771	3300032805	Soil	MSTLKKLAEIPAGSWTKWVVVGFWVVVLVLAFPLSKK
Ga0310914_113169231	3300033289	Soil	MSRLRRIAEIPAGSWTKWVVVGFWLVVLVLAFPLSSK
Ga0314864_0175522_3_107	3300033805	Peatland	MSTLRRIAEVPAGSWTKWVVVGFWVVVLVLAFPLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068364

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences