Metagenome / Metatranscriptome Family F068109

Overview

Basic Information

• Family ID: F068109
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 125
• Average Sequence Length: 46 residues
• Representative Sequence: MIEALQQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFVAYK
• Number of Associated Samples: 96
• Number of Associated Scaffolds: 125

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 86.40 %
• % of genes near scaffold ends (potentially truncated): 16.80 %
• % of genes from short scaffolds (< 2000 bps): 78.40 %
• Associated GOLD sequencing projects: 88
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (96.800 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (28.000 % of family members)
• Environment Ontology (ENVO): Unclassified (48.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (53.600 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 16.44%
  β-sheet: 21.92%
  Coil/Unstructured: 61.64%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF13847	Methyltransf_31	41.60
PF08241	Methyltransf_11	18.40
PF13649	Methyltransf_25	4.80
PF03401	TctC	2.40
PF00211	Guanylate_cyc	2.40
PF03992	ABM	2.40
PF01070	FMN_dh	1.60
PF06052	3-HAO	1.60
PF13489	Methyltransf_23	1.60
PF02635	DrsE	1.60

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.40
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.40
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	1.60
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	1.60
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.80
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.80
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.80
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.80
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.80
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.80

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.80 %
Unclassified	root	N/A	3.20 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.80 %
Unclassified	root	N/A	3.20 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.80 %
Unclassified	root	N/A	3.20 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.60 %
Unclassified	root	N/A	3.20 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.60 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.60 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.60 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8.00 %
Unclassified	root	N/A	3.20 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.60 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.80 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	3.20 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.80 %
Unclassified	root	N/A	3.20 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.60 %

Level 7

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.80 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	0.80 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.80 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.80 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	0.80 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	3.20 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.80 %
Unclassified	root	N/A	3.20 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.80 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.80 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Baekduiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae	0.80 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.80 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	0.80 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.80 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.80 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	3.20 %
Unclassified	root	N/A	3.20 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Baekduia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia	0.80 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.80 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	0.80 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.80 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.80 %
Pseudomonas linyingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas linyingensis	3.20 %
Unclassified	root	N/A	3.20 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Baekduia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	0.80 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.80 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	0.80 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.80 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.80 %
Pseudomonas linyingensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas linyingensis	3.20 %
Unclassified	root	N/A	3.20 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000956|JGI10216J12902_106549838	All Organisms → cellular organisms → Bacteria	1180
3300002104|C687J26621_10017774	All Organisms → cellular organisms → Bacteria → Proteobacteria	3075
3300002104|C687J26621_10020228	All Organisms → cellular organisms → Bacteria → Proteobacteria	2813
3300002104|C687J26621_10035054	Not Available	1943
3300002104|C687J26621_10114293	All Organisms → cellular organisms → Bacteria → Proteobacteria	852
3300002121|C687J26615_10004639	All Organisms → cellular organisms → Bacteria	3045
3300002121|C687J26615_10005859	All Organisms → cellular organisms → Bacteria	2777
3300002121|C687J26615_10116680	All Organisms → cellular organisms → Bacteria	671
3300002121|C687J26615_10140128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas linyingensis	610
3300002122|C687J26623_10001547	All Organisms → cellular organisms → Bacteria → Proteobacteria	4849

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.80%
Host-Associated	Host-Associated	7.20%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	53.60%
Plants	Host-Associated → Plants	7.20%
Terrestrial	Environmental → Terrestrial	39.20%

Category

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.80%
Floodplain	Environmental → Terrestrial → Floodplain	4.80%
Freshwater	Environmental → Aquatic → Freshwater	11.20%
Marine	Environmental → Aquatic → Marine	1.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.40%
Roots	Host-Associated → Plants → Roots	0.80%
Sediment	Environmental → Aquatic → Sediment	34.40%
Soil	Environmental → Terrestrial → Soil	33.60%
Thermal Springs	Environmental → Aquatic → Thermal Springs	6.40%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.00%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	4.80%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	4.80%
Lake	Environmental → Aquatic → Freshwater → Lake	0.80%
Loam	Environmental → Terrestrial → Soil → Loam	6.40%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.60%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	4.80%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	34.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.40%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.40%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.60%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	34.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.80%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	6.40%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.60%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.80%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	4.80%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	4.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.40%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.60%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.80%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	4.00%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.40%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.20%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.80%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.00%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	4.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.40%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.60%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.60%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.60%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	4.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	28.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.40%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	6.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.80%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	4.80%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300002104	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2	Environmental
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental
3300003392	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM	Host-Associated
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated
3300006169	Termite nest microbial communities from Madurai, India	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1065498383	3300000956	Soil	MIEALHQAGFRNARACHFFDSFSGTAKERVARKYEVLGANFVAHK*
C687J26621_100177744	3300002104	Groundwater	MIEALQQIGFRDVRACHYFNSFSGTTKEGVARKYGVQGANFVAYKAA*
C687J26621_100202283	3300002104	Groundwater	MIEALQKSGFRNARACHFFDSFLGTTKEAVARKYGVRGANFVAYK*
C687J26621_100350541	3300002104	Groundwater	QVAEMIEALQKSGFRNARACHFFDSFLGTTKEGVARKYGVRGANFVAHK*
C687J26621_101142932	3300002104	Groundwater	MIEALQQIGFQDVRACHFFNSFSGTTKEGVARKYGVQGANFVAYKAA*
C687J26615_100046392	3300002121	Soil	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYKAA*
C687J26615_100058592	3300002121	Soil	MIEALQQTGFQRVRVCHFFNSFSGTTKEGVARKYAVQGANFIAYKAA*
C687J26615_101166802	3300002121	Soil	MIEALQQTGFQSVRVCNFFNSFSGTTKEGVARKYGVQGANFIAHKAA*
C687J26615_101401282	3300002121	Soil	GALQVAEMIEALQQAGFRSARANHFFDSFSGTTKERVARKYEVRGANFXAHK*
C687J26623_100015474	3300002122	Soil	MIEALQQTGFLRVRVXXFFNSFSGTTKEGVARKYGVQGANFIAYKAA*
JGI26134J50242_1029092	3300003392	Arabidopsis Thaliana Rhizosphere	MIEALQQAGFHDVRACHFFDSFAGTNKERVAKKYGVRGTNFTAVK*
Ga0055469_102075062	3300003999	Natural And Restored Wetlands	MIEALHQAGFRNARARSFFDSFSGTAKETIARKYGVRGANFSAYKVA*
Ga0055437_103200701	3300004009	Natural And Restored Wetlands	MMEVMERFGFRNAKACHFFDSFAGTTKERIARKFGVTGANFLAVKPR*
Ga0063356_1001244574	3300004463	Arabidopsis Thaliana Rhizosphere	MTEALSRAGFRNARATHFFESFLGTSKERVANKYGVRGVNFIAWK*
Ga0063356_1014888733	3300004463	Arabidopsis Thaliana Rhizosphere	MIEALRQAGFRDVRACQVFDSFAGTSKERVARKYEVRGGNFMAW
Ga0068857_1010437163	3300005577	Corn Rhizosphere	QSAEMIELLGQIGFKRGAAVRFFDSFAGTTKERVAQKYQVRGANFIAYK*
Ga0082029_12979042	3300006169	Termite Nest	MIQALESVGFRNVRACEFFDSFQGTNKENIARKFDVRGANFIAYK*
Ga0075421_1004038643	3300006845	Populus Rhizosphere	MIEALQKAGFRNARACRFFDSFSGTTKERVARKYGVRGANFVAYR*
Ga0073934_1000428913	3300006865	Hot Spring Sediment	MIEALRQAGFRDVRACQFFDSFAGTNKERVARKYDVRGTNFIARK*
Ga0079217_111176492	3300006876	Agricultural Soil	MLDVIHRSGFRDARASHSFDSFKGTSKERVAAKYGVRGVNFTAYK*
Ga0079215_108821642	3300006894	Agricultural Soil	MIEALKQAGFRDVRACQVFDSFAGTSKERVARKYEVRGGNFMARK*
Ga0105095_106431692	3300009053	Freshwater Sediment	MIEALEAAGFRSARACHFRDTIAGTSKERVARKYQVQGANFMAFK*
Ga0105106_101448773	3300009078	Freshwater Sediment	MIEALEAAGFRSARACHFLDSFAGTSKERVARKYQVQGANFMAFK*
Ga0105106_106090732	3300009078	Freshwater Sediment	MIEALQQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0105107_103732712	3300009087	Freshwater Sediment	MTEALSRAGFRNARATYFFESFLGTSKERVANKYGVRGVNFIAWK*
Ga0114945_103740352	3300009444	Thermal Springs	MIEALQQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFVAYK*
Ga0114945_104758042	3300009444	Thermal Springs	MIDIIHRAGFRDARVCRFFDSFAGTTKEAVARKFGVRGANFTALKPAGS*
Ga0114945_110431972	3300009444	Thermal Springs	MIEVIHQAGFRNARACRLFDCFSGTAKERVARKYQVRGANFIAY
Ga0105347_15126092	3300009609	Soil	IAGALQVAELIEALQQTGFRNVRACNFFNSFSGTTKEGVARKYGVRGANFIAYKAA*
Ga0105340_10448611	3300009610	Soil	MIEVLSQAGFRNARAHHFFDSFAGTTKERVARKYGVRGANFTAYKAA*
Ga0105340_11671382	3300009610	Soil	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYKTA*
Ga0105252_102061702	3300009678	Soil	MIEALQQAGFRDARACHFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0114944_11235332	3300009691	Thermal Springs	MIDIIHRAGFGDARVCRFFDSFAGTTKEAVARKFGVRGANFTALKPAGS*
Ga0137020_1035672	3300010408	Soil	MIEALHQAGFRNARACHFFDSFSGTTKEGVARKYGVQGANFIAHK*
Ga0137440_10544932	3300011410	Soil	MIEALQQAGFRNAHACHFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0137441_10729721	3300011425	Soil	AELIEALQETGFRNVRACNFFNSFSGTTKEGVARKYGVQGANFIAYKAA*
Ga0137448_10949742	3300011427	Soil	MIEALQQAGFRNAHARQFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0137455_10863002	3300011429	Soil	MIQVIQQAGFRNARACHFFDSFSGTTKERVARKYGVRGANFIAYKAP*
Ga0137426_12392991	3300011435	Soil	IAGALQVAEMIEALHQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0137452_13145722	3300011441	Soil	MIEALRQAGFRDARACHFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0137431_10152676	3300012038	Soil	MIEALQQAGFRNARASHFFDSFSGTTKERLARKYEVRGANFIAHK*
Ga0137329_10093232	3300012133	Soil	MIEALQQTGFQSVRICNFFDSFSGTTKEKVARKYGVQGANFMAYKAA*
Ga0137351_10145362	3300012140	Soil	MIEALQQTGFRSVRVCNFFNSFSGTTKEKVARKYGVQGANFMAYKAA*
Ga0137343_10006324	3300012142	Soil	MIEALQQTGFQRVRVCNFFTSFSGTTKEGVARKYGVQGANFIAYKAA*
Ga0137344_10928492	3300012159	Soil	MIEALQQTGFRIVRVCHFFNSFSGTTKEGVARKYGVQGANFIAYRAA*
Ga0137350_10862862	3300012166	Soil	FQGVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYKAA*
Ga0137342_10109021	3300012171	Soil	MIEALQQTGFQSVRVCNFFNSFSGTTKEGVARKYG
Ga0137327_11296352	3300012173	Soil	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFMAYKAA*
Ga0137465_11577462	3300012231	Soil	MIEALQQTGFRRVRVCNFFNSFSGTTKEGVARKYGVQGANFIAYRAA*
Ga0137318_10232642	3300012671	Soil	MIEALQQSGFRSVRVCNFFDSFSGTTKEKVARKYGVQGANFMAYKAA*
Ga0137337_10124043	3300012675	Soil	MIEALQQTGFQSVRVCNFFNSFSGTTKEGVARKYGVQGANFIAFKAA*
Ga0075320_10074992	3300014255	Natural And Restored Wetlands	MIEALHQAGFRNARARNFFDSFSGTTKEGIAHKYGVRGANFIAYKVL*
Ga0075326_12401252	3300014271	Natural And Restored Wetlands	MIEALHQAGFRNARARSFFDSFSGTAKETIARKYGVRGANFSAYKLA*
Ga0163163_110383813	3300014325	Switchgrass Rhizosphere	MIELLGQIGFKRGAAVRFFDSFAGTTKERVAQKYQVRGANFIAYK*
Ga0180068_10342852	3300014864	Soil	MIEALQQTGFQSVRVCNFFNSFSGTTKEKVARKYGVQGANFMAYKAA*
Ga0180087_10117503	3300014872	Soil	MIEALQQSGFRSVRVCNFFDSFSGTTKEKVARKYGVQGANFIAYKTA*
Ga0180087_10595982	3300014872	Soil	MIEALQQARFRNARACHFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0180066_10098213	3300014873	Soil	MIEALSQAGFRNARARHFFDSFAGTTKEGVARKYGVRGANFTAYKGA*
Ga0180064_10793152	3300014876	Soil	MIEALQQTGFQSVRVCNFFNSFSGTTKEKVARKYGVQGANFIAYKTA*
Ga0180065_11476661	3300014878	Soil	MIEALHQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFMAMK*
Ga0180082_10474051	3300014880	Soil	MIEALQQAGFRNVRVCNFFDSFSETTKERVARKYG
Ga0180082_10934902	3300014880	Soil	GALQVAEMIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYKTA*
Ga0180069_10333523	3300014882	Soil	MIEALQQTGFQSVRVCNFFNSFSGTTKEGVARKYGVQGANFMAYKAA*
Ga0180086_10412422	3300014883	Soil	MIEALHQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFVAHK*
Ga0180089_10100541	3300015254	Soil	MIEALQQSGFRSVRVCNFFNSFSGTTKEGVARKYGVQGANFIAFKVA*
Ga0180077_10198933	3300015255	Soil	EALQQTGFQRVRVCNFFTSFSGTTKEGVARKYGVQGANFIAYKAA*
Ga0180073_11097902	3300015256	Soil	MIEALQQSGFRSVRVCNFFDSFSGTTKEKVARKYGVQG
Ga0184605_104485002	3300018027	Groundwater Sediment	MIQALEEVGFRNARVCDYFDSFSGTNKENVARKFGVRGANFIAYR
Ga0184634_100883102	3300018031	Groundwater Sediment	MIEVLSQAGFRNARARHFFDSFAGTTKEGVARKYGVRGANFTAYKAA
Ga0184634_102269982	3300018031	Groundwater Sediment	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYRAA
Ga0184637_100470343	3300018063	Groundwater Sediment	MIEALQQTGFQRVRVCNFFNSFSGTTKEGVARKYGVQGANFIAYRAA
Ga0184637_103947962	3300018063	Groundwater Sediment	MIQVIQQAGFRNARACRFFDSFSGTTKERVARKYGVRGANFTAYKAA
Ga0184640_101433684	3300018074	Groundwater Sediment	MIEALQQTGFQRVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYKAA
Ga0184633_101545382	3300018077	Groundwater Sediment	MIQVIQQAGFRNARACHFFDSFSGTTKERVARKYGVRGANFIAYKAP
Ga0184629_101899592	3300018084	Groundwater Sediment	MIEALQQTGFRSVRVCNFFNSFSGTTKEKVARKYGVQGANFMAYKAA
Ga0190265_101474473	3300018422	Soil	MTELLEKTGFRNVAPRRFFDSFAGTTKERVAGKYQVRGANFIAYK
Ga0190265_117794321	3300018422	Soil	MIEALHRAGFRNARARRFFDSFSATTKEEIARKYDVRGANFIAYK
Ga0190272_103855862	3300018429	Soil	MIEALHQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFVAHK
Ga0190270_121003811	3300018469	Soil	MIEALRQTGFLNVRVCNHFNSFSGTTKERVARKYGVQGANFIAYRAA
Ga0190270_125380852	3300018469	Soil	MIEALHQAGFRNVRACDFFDSFSGTTKERVARKYEVRGANFVAHK
Ga0180119_11226872	3300019228	Groundwater Sediment	MIEALQQAGFRNARACHYFDSFSGTTKERVARKYEVRGANFMAMK
Ga0180112_10309773	3300019238	Groundwater Sediment	MIEALQQTGFQRVRVCNFFTSFSGTTKEGVARKYGVQGANFIAYKAA
Ga0206227_10116053	3300021063	Deep Subsurface Sediment	MIEALQQTGFQRVRVWHFFNSFSGTTKEGVARKYGVQGANFVAYKAA
Ga0212128_101302572	3300022563	Thermal Springs	MIDIIHRAGFRDARVCRFFDSFAGTTKEAVARKFGVRGANFTALKPAGS
Ga0209001_10602062	3300025002	Soil	MIEALQQTGFQRVRVCHFFNSFSGTTKEGVARKYAVQGANFIAYKAA
Ga0209827_110153951	3300025149	Thermal Springs	MIDIIHRAGFGDARVCRFFDSFAGTTKEAVARKFGVRGANFTALKPAGS
Ga0209109_100086284	3300025160	Soil	MIEALQQIGFQDVRACHFFNSFAGTTKEGVARKYGVQGANFVAYKAA
Ga0209109_100188882	3300025160	Soil	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYKAA
Ga0209109_103730372	3300025160	Soil	MIEALQQTGFQSVRVCNFFNSFSGTTKEGVARKYGVQGANFIAHKAA
Ga0209108_100926432	3300025165	Soil	MIEALQQIGFQDVRACHFFNSFSGTTKEGVARKYGVQGANFVAYKAA
Ga0209108_101605381	3300025165	Soil	NVRVCNFFNSFSGTTKEGVARKYGVQGANFVAYKAG
Ga0209172_1000110922	3300025310	Hot Spring Sediment	MIEALRQAGFRDVRACQFFDSFAGTNKERVARKYDVRGTNFIARK
Ga0209343_100090267	3300025311	Groundwater	MIEALQKSGFRNARACHFFDSFLGTTKEAVARKYGVRGANFVAYK
Ga0209343_100148309	3300025311	Groundwater	MIEALQQIGFRDVRACHYFNSFSGTTKEGVARKYGVQGANFVAYKAA
Ga0209519_107343751	3300025318	Soil	LQQAGFRSARANHFFDSFSGTTKERVARKYEVRGANFIAHK
Ga0209640_1000115822	3300025324	Soil	MIEALQQAGFRSARANHFFDSFSGTTKERVARKYEVRGANFIAHK
Ga0209640_100089982	3300025324	Soil	MIEALQQTGFRNVRVCNFFNSFSGTTKEGVARKYGVQGANFVAYKAG
Ga0209640_101310351	3300025324	Soil	MIEALQKSGFRNARACHFFDSFLGTTKEGVARKYGVRGANFVAHK
Ga0208185_10202282	3300027533	Soil	MIEVLSQAGFRNARAHHFFDSFAGTTKERVARKYGVRGANFTAYKAA
Ga0209818_12391782	3300027637	Agricultural Soil	MLDVIHRSGFRDARASHSFDSFKGTSKERVAAKYGVRGVNFTAYK
Ga0209983_10993262	3300027665	Arabidopsis Thaliana Rhizosphere	MIEALQQAGFHDVRACHFFDSFAGTNKERVAKKYGVRGTNFTAVK
Ga0209706_100525714	3300027818	Freshwater Sediment	MIEALEAAGFRSARACHFLDSFAGTSKERVARKYQVQGANFMAFK
Ga0209382_105473563	3300027909	Populus Rhizosphere	MIEALQKAGFRNARACRFFDSFSGTTKERVARKYGVRGANFVAYR
Ga0299907_105552412	3300030006	Soil	MIEALHQAGFRNARARSFFDSFSGTAKETIAHKYGVRGANFSAYKVA
Ga0299913_108609842	3300031229	Soil	MIEALHQAGFRNARARSFFDSFSGTAKETIARKYGVRGANFSAYKVAQEV
Ga0315290_100893953	3300031834	Sediment	MAEAGFRNAASRDIFDSFLGSSKEATARKFGVLGANFIAYK
Ga0214473_118249732	3300031949	Soil	HRAGFRNARACQFFDSFLGTTNEALARKYGVQGANFVAYKAS
Ga0326597_100148352	3300031965	Soil	MIEALQQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFMAMK
Ga0326597_100661325	3300031965	Soil	MIEALSQAGFRNARARHFFDSFAGTTKEGVARKYGVRGANFTAYKGA
Ga0326597_106061312	3300031965	Soil	MIEALQQAGFRNARACHFFDSFAGTTKERVARKYEVRGANFVAYK
Ga0326597_106069772	3300031965	Soil	MIEALQQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFVAYK
Ga0326597_108687122	3300031965	Soil	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYAVQGANFIAYKAA
Ga0326597_116035792	3300031965	Soil	MIEALQRAGFRNARACHFFDSFAGTTKERVARKYDVRGANFVAYK
Ga0307416_1018481012	3300032002	Rhizosphere	MIQALEAAGFRNARACEFFDSFAGTNKENIARKFDVRGANFTAYR
Ga0214472_103521802	3300033407	Soil	MIEVMHRAGFRNARACQFFDSFLGTTKEALARKYGVQGANFVAYKAS
Ga0214471_100212361	3300033417	Soil	IAGALQVAEMIEALQQAGFRNARACHFFDSFSGTTKERVARKYEVRGANFVAYK
Ga0214471_109410132	3300033417	Soil	MIEIIHRAGFRDARVCQYFDSFLGTTKEALARKYGVQG
Ga0316628_1002686782	3300033513	Soil	MIEAMSEAGFRDSRACHFFDSFQGTSKENVARKFGVQGANFIAYKT
Ga0247830_100089551	3300033551	Soil	MTEALSRAGFRNARATHFFESFLGTSKERVANKYGVRGVNFIAWK
Ga0364924_011675_1223_1366	3300033811	Sediment	MIEALKQAGFHDVRATHFFDSFRGTNKERVAGKYGVRGTNFIGWKQG
Ga0364928_0040554_363_506	3300033813	Sediment	MIEALQQSGFRSVRVCNFFDSFSGTTKEKVARKYGVQGANFMAYKAA
Ga0364930_0063981_3_143	3300033814	Sediment	IEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFVAYKAA
Ga0364938_054391_581_703	3300034114	Sediment	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANF
Ga0364942_0002893_318_461	3300034165	Sediment	MIEALQQTGFQGVRVWHFFNSFSGTTKEGVARKYGVQGANFVAYKAA
Ga0364943_0224830_8_151	3300034354	Sediment	MIEALQQTGFLRVRVWHFFNSFSGTTKEGVARKYGVQGANFIAYKTA