Metagenome / Metatranscriptome Family F068106

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068106
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	88 residues
Representative Sequence	MTIMTTIVAVALGLAPIGKDGTVQPVSAKDAHEIGRYSETVDDTGTTHLRGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
Number of Associated Samples	86
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.40 %
% of genes near scaffold ends (potentially truncated)	32.80 %
% of genes from short scaffolds (< 2000 bps)	87.20 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (20.800 % of family members)
Environment Ontology (ENVO)	Unclassified (55.200 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.400 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 13.91% β-sheet: 26.96% Coil/Unstructured: 59.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
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SCOP family	SCOP domain	Representative PDB	TM-score
b.60.1.2: Fatty acid binding protein-like	d2a0aa1	2a0a	0.65932
c.66.1.6: Arginine methyltransferase	d6dvra_	6dvr	0.63032
f.4.5.1: Autotransporter	d1uynx_	1uyn	0.61816
b.60.1.6: Phenolic acid decarboxylase (PAD)	d2w2aa_	2w2a	0.60033
f.4.4.2: Outer membrane adhesin/invasin OpcA	d1k24a_	1k24	0.59846

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF04343	DUF488	31.20
PF10116	Host_attach	28.80
PF01134	GIDA	7.20
PF03989	DNA_gyraseA_C	6.40
PF04402	SIMPL	4.80
PF07726	AAA_3	0.80
PF00285	Citrate_synt	0.80
PF13202	EF-hand_5	0.80
PF00722	Glyco_hydro_16	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	31.20
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	6.40
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	4.80
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	4.80
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	4.80
COG0372	Citrate synthase	Energy production and conversion [C]	0.80
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	97.60 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	96.80 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	96.80 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	88.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	10.40 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	4.80 %
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	4.00 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1.60 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16568039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1623	Open in IMG/M
2162886012\|MBSR1b_contig_11910465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	927	Open in IMG/M
2162886012\|MBSR1b_contig_5760958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1067	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101555572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2616	Open in IMG/M
3300003319\|soilL2_10104616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1174	Open in IMG/M
3300004114\|Ga0062593_100122129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1901	Open in IMG/M
3300004114\|Ga0062593_102686878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	567	Open in IMG/M
3300004156\|Ga0062589_100184162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1484	Open in IMG/M
3300004156\|Ga0062589_101193395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	727	Open in IMG/M
3300004157\|Ga0062590_100221493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1392	Open in IMG/M
3300004157\|Ga0062590_102436926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	553	Open in IMG/M
3300004463\|Ga0063356_100248745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2153	Open in IMG/M
3300004463\|Ga0063356_100883180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1260	Open in IMG/M
3300004463\|Ga0063356_102348524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	814	Open in IMG/M
3300005093\|Ga0062594_101586475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	677	Open in IMG/M
3300005289\|Ga0065704_10807855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	522	Open in IMG/M
3300005293\|Ga0065715_10061567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	553	Open in IMG/M
3300005328\|Ga0070676_10586638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	802	Open in IMG/M
3300005328\|Ga0070676_11136171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	591	Open in IMG/M
3300005331\|Ga0070670_100677669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	926	Open in IMG/M
3300005335\|Ga0070666_11174217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	571	Open in IMG/M
3300005344\|Ga0070661_100172096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1645	Open in IMG/M
3300005344\|Ga0070661_100547395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	931	Open in IMG/M
3300005353\|Ga0070669_100163179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1733	Open in IMG/M
3300005353\|Ga0070669_100465587	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300005354\|Ga0070675_100294142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1429	Open in IMG/M
3300005355\|Ga0070671_100451562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1103	Open in IMG/M
3300005364\|Ga0070673_100574380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1026	Open in IMG/M
3300005364\|Ga0070673_102217842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	522	Open in IMG/M
3300005455\|Ga0070663_100675476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	876	Open in IMG/M
3300005456\|Ga0070678_100618001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	969	Open in IMG/M
3300005543\|Ga0070672_100528032	All Organisms → cellular organisms → Bacteria → Proteobacteria	1023	Open in IMG/M
3300005548\|Ga0070665_100398473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	1384	Open in IMG/M
3300005840\|Ga0068870_10426407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	869	Open in IMG/M
3300006061\|Ga0081201_105944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1320	Open in IMG/M
3300006169\|Ga0082029_1369725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	7096	Open in IMG/M
3300009148\|Ga0105243_11196629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	773	Open in IMG/M
3300009177\|Ga0105248_11666064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	723	Open in IMG/M
3300010227\|Ga0136219_1006890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1150	Open in IMG/M
3300010229\|Ga0136218_1001364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	3467	Open in IMG/M
3300011332\|Ga0126317_10651879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1058	Open in IMG/M
3300012212\|Ga0150985_103632911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	517	Open in IMG/M
3300012469\|Ga0150984_115088460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	575	Open in IMG/M
3300013100\|Ga0157373_10445037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	932	Open in IMG/M
3300013102\|Ga0157371_10479432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	917	Open in IMG/M
3300013102\|Ga0157371_10596435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	821	Open in IMG/M
3300015371\|Ga0132258_10104356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	6690	Open in IMG/M
3300015371\|Ga0132258_10312864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	3868	Open in IMG/M
3300015371\|Ga0132258_10569477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2841	Open in IMG/M
3300015374\|Ga0132255_100517498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1755	Open in IMG/M
3300015374\|Ga0132255_100734510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1468	Open in IMG/M
3300017792\|Ga0163161_10328743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1210	Open in IMG/M
3300017792\|Ga0163161_11201261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	656	Open in IMG/M
3300018432\|Ga0190275_13304528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	522	Open in IMG/M
3300018465\|Ga0190269_10708471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	705	Open in IMG/M
3300018465\|Ga0190269_10751589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	692	Open in IMG/M
3300018465\|Ga0190269_11326579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	577	Open in IMG/M
3300018466\|Ga0190268_11867052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	545	Open in IMG/M
3300018481\|Ga0190271_10057852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3347	Open in IMG/M
3300022756\|Ga0222622_10514118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	857	Open in IMG/M
3300025893\|Ga0207682_10072789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1459	Open in IMG/M
3300025901\|Ga0207688_10238241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1100	Open in IMG/M
3300025903\|Ga0207680_10585587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	798	Open in IMG/M
3300025923\|Ga0207681_11162033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	648	Open in IMG/M
3300025923\|Ga0207681_11311401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	608	Open in IMG/M
3300025923\|Ga0207681_11822521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	507	Open in IMG/M
3300025925\|Ga0207650_10950481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	730	Open in IMG/M
3300025926\|Ga0207659_10734508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	846	Open in IMG/M
3300025930\|Ga0207701_10469771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1079	Open in IMG/M
3300025931\|Ga0207644_10017839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4800	Open in IMG/M
3300025931\|Ga0207644_10522028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	981	Open in IMG/M
3300025935\|Ga0207709_11843459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	503	Open in IMG/M
3300025941\|Ga0207711_10594072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1033	Open in IMG/M
3300025960\|Ga0207651_10360226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1227	Open in IMG/M
3300025972\|Ga0207668_11967901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	527	Open in IMG/M
3300027252\|Ga0209973_1067422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	557	Open in IMG/M
3300027552\|Ga0209982_1087560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	515	Open in IMG/M
3300027617\|Ga0210002_1013677	All Organisms → cellular organisms → Bacteria → Proteobacteria	1268	Open in IMG/M
3300028381\|Ga0268264_12703524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	500	Open in IMG/M
3300028587\|Ga0247828_11076958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	530	Open in IMG/M
3300028589\|Ga0247818_10238427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1200	Open in IMG/M
3300028590\|Ga0247823_10232574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1397	Open in IMG/M
3300028592\|Ga0247822_10998184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	691	Open in IMG/M
3300028592\|Ga0247822_11575860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	556	Open in IMG/M
3300028597\|Ga0247820_10394809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	925	Open in IMG/M
3300028597\|Ga0247820_10615496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	750	Open in IMG/M
3300028889\|Ga0247827_10077971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1600	Open in IMG/M
3300031164\|Ga0307502_10147018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	529	Open in IMG/M
3300031481\|Ga0314816_1022754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	781	Open in IMG/M
3300031481\|Ga0314816_1047871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	569	Open in IMG/M
3300031538\|Ga0310888_10734150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	608	Open in IMG/M
3300031547\|Ga0310887_10808540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	589	Open in IMG/M
3300031548\|Ga0307408_100128180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1976	Open in IMG/M
3300031548\|Ga0307408_100358293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1240	Open in IMG/M
3300031548\|Ga0307408_100675218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	926	Open in IMG/M
3300031548\|Ga0307408_101780987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	588	Open in IMG/M
3300031548\|Ga0307408_101953602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	563	Open in IMG/M
3300031731\|Ga0307405_10506271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	969	Open in IMG/M
3300031731\|Ga0307405_10737836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	819	Open in IMG/M
3300031731\|Ga0307405_11218159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	652	Open in IMG/M
3300031824\|Ga0307413_10001405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	9090	Open in IMG/M
3300031824\|Ga0307413_11130127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	678	Open in IMG/M
3300031824\|Ga0307413_11900538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	535	Open in IMG/M
(restricted) 3300031825\|Ga0255338_1000103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	386422	Open in IMG/M
3300031847\|Ga0310907_10155561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1054	Open in IMG/M
3300031852\|Ga0307410_10057493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2649	Open in IMG/M
3300031852\|Ga0307410_10454687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1045	Open in IMG/M
3300031852\|Ga0307410_11967676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	521	Open in IMG/M
3300031901\|Ga0307406_10069710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2300	Open in IMG/M
3300031908\|Ga0310900_10055763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2347	Open in IMG/M
3300031911\|Ga0307412_10468349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1042	Open in IMG/M
3300031995\|Ga0307409_100093557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2470	Open in IMG/M
3300031995\|Ga0307409_100207507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1758	Open in IMG/M
3300031995\|Ga0307409_102443815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	551	Open in IMG/M
3300032000\|Ga0310903_10665156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	560	Open in IMG/M
3300032002\|Ga0307416_100468540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1317	Open in IMG/M
3300032004\|Ga0307414_11849087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	563	Open in IMG/M
3300032004\|Ga0307414_12071268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	531	Open in IMG/M
3300032005\|Ga0307411_10263019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1363	Open in IMG/M
3300032005\|Ga0307411_11103351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	715	Open in IMG/M
3300032005\|Ga0307411_11470854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	625	Open in IMG/M
3300032005\|Ga0307411_11654643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	592	Open in IMG/M
3300032013\|Ga0310906_11176368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	557	Open in IMG/M
3300032075\|Ga0310890_11120708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	638	Open in IMG/M
3300032144\|Ga0315910_10088724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2263	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	65.60%
Environmental	Environmental	32.00%
Engineered	Engineered	2.40%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	65.60%
Terrestrial	Environmental → Terrestrial	28.80%
Aquatic	Environmental → Aquatic	3.20%
Lab Enrichment	Engineered → Lab Enrichment	1.60%
Industrial Production	Engineered → Industrial Production	0.80%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	48.00%
Soil	Environmental → Terrestrial → Soil	28.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.60%
Freshwater	Environmental → Aquatic → Freshwater	2.40%
Unclassified	Engineered → Lab Enrichment → Unclassified	1.60%
Sediment	Environmental → Aquatic → Sediment	0.80%
Engineered Product	Engineered → Industrial Production → Engineered Product	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.40%
Soil	Host-Associated → Plants → Rhizosphere → Soil	21.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.00%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.40%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.80%
Sand	Environmental → Terrestrial → Soil → Sand	0.80%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.80%
Unclassified	Engineered → Industrial Production → Engineered Product → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	21.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.20%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.40%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.40%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.80%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.80%
Unclassified	Engineered → Industrial Production → Engineered Product → Unclassified → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	20.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	13.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.60%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.00%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.60%
Soil	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil	1.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.80%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.80%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.80%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.80%
Petroleum Sediment	Engineered → Industrial Production → Engineered Product → Unclassified → Unclassified → Petroleum Sediment	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006061	Microbial communities from petroleum pipeline sediment, Khambat, Gujarat, India	Engineered	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010227	Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 2	Engineered	Open in IMG/M
3300010229	Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 1	Engineered	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031164	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 16_S	Environmental	Open in IMG/M
3300031481	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031825 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01785250	2088090014	Soil	MVLEEISTQQSRRVKKEIIMTMMTTIVAVALGLAPIGHDGTVQPVSEDXRTIGRFSETTDDTGTTHLTGINRKTGEQFYLTVNPYGRVEGSVGDWAVTFQVSKAA
MBSR1b_0410.00001960	2162886012	Miscanthus Rhizosphere	MTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEGSVAGGVVTFNVKSAV
MBSR1b_0802.00001170	2162886012	Miscanthus Rhizosphere	MTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGHYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
INPhiseqgaiiFebDRAFT_1015555723	3300000364	Soil	MVLEEISTQQSRRVKKEIIMTMMTTIVAVALGLAPIGHDGTVQPVSEDQARTIGRFSETTDDTGTTHLTGINRKTGEQFYLTVNPYGRVEGSVGDWAVTFQVSKAA*
soilL2_101046162	3300003319	Sugarcane Root And Bulk Soil	MTMMTTVIAVALGLAPVPADGTVAHVGADTEKMIGRYSETVDDTGTTHLRGLNRRTGQLYHLTVNPHGRVEGSVGDWVVSFHVRPTA*
Ga0062593_1001221293	3300004114	Soil	MSMMSTIVAVALGLTPVGHDGTVQPISADQTRMIGRFTETTDDTGTTHLTGVNRNTGEQFYLTVNPYGRVEGS
Ga0062593_1026868782	3300004114	Soil	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA*
Ga0062589_1001841623	3300004156	Soil	MSMMSTIVAVALGLTPVGHDGTVQPISADQTRMIGRFTETTDDTGTTHLTGVNRNTGEQFYLTVNPYGRVEGSVGNWSVTFQVSKVA*
Ga0062589_1011933952	3300004156	Soil	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLTVTFQVSKAA*
Ga0062590_1002214931	3300004157	Soil	MVLEEISPQQPRCVKKEIIMTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA*
Ga0062590_1024369262	3300004157	Soil	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGQTFHLTVNPQGRVEGSVG
Ga0063356_1002487454	3300004463	Arabidopsis Thaliana Rhizosphere	MTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEGSVAGGVVTFNVKSAV*
Ga0063356_1008831801	3300004463	Arabidopsis Thaliana Rhizosphere	MTMMTTVIAVALGFAPVPADGTVNFVGVDTEKMIGRYSETVDDTGTTHLRGLNRRTGKIYHITVNPYGRVEGSVG
Ga0063356_1023485241	3300004463	Arabidopsis Thaliana Rhizosphere	MVLEEHPLQQPRCQKKGKLMTLMTTIVAVALGLPPIPADGKVQLPADSTERLIGRYSESTDDTGTTHLKGVNRRTGEVFHLTVNPFGRVEGSVGEKMVTFNVATLG*
Ga0062594_1015864751	3300005093	Soil	MTMMTTIVAVALGLAPIGHDGIVQPVSEDQARTAFGRYSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNWAVTFQVSKAT*
Ga0065704_108078551	3300005289	Switchgrass Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLKGINRRTGEVFHLTVNPFGRVEGSVGSWVVTFQVSETA*
Ga0065715_100615672	3300005293	Miscanthus Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGXYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTXQVSETA*
Ga0070676_105866382	3300005328	Miscanthus Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSV
Ga0070676_111361712	3300005328	Miscanthus Rhizosphere	EISPQQPRCVKKEIIMTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA*
Ga0070670_1006776691	3300005331	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGQTFHLTVNPQGRVEGSVGDWVVTFQVASAA*
Ga0070666_111742171	3300005335	Switchgrass Rhizosphere	MTMMTTIVAVALGLAPIGHDGIVQPVSEDQARTAFGRYSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA*
Ga0070661_1001720962	3300005344	Corn Rhizosphere	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA*
Ga0070661_1005473953	3300005344	Corn Rhizosphere	MMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEGSVAGGVVTFNVKSAV*
Ga0070669_1001631793	3300005353	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRYSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA*
Ga0070669_1004655872	3300005353	Switchgrass Rhizosphere	MTMMTTILGAALGLTPIQSDGTVQPLSDRDAQIIGRYDETVDDTGTTHLQGVNRRTGEFFHLTVNPFGRVEGSVGAWVVEFQVKSAV*
Ga0070675_1002941423	3300005354	Miscanthus Rhizosphere	MVLEEISLQRPRCAKRETRMTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA*
Ga0070671_1004515621	3300005355	Switchgrass Rhizosphere	MVLEEISPQQPRCVKKEIIMTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLTVTFQVSKAA*
Ga0070673_1005743802	3300005364	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLTVTFQVSKAA*
Ga0070673_1022178421	3300005364	Switchgrass Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVT
Ga0070663_1006754761	3300005455	Corn Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGHYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA*
Ga0070678_1006180012	3300005456	Miscanthus Rhizosphere	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGKTFHLTVNPQGRVEGSVGDWVVTFQVASAA*
Ga0070672_1005280322	3300005543	Miscanthus Rhizosphere	MAMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGQTFHLTVNPQGRVEGSVGDWVVTFQVASAA*
Ga0070665_1003984731	3300005548	Switchgrass Rhizosphere	MTIMTTIVAVALGIASIGQNGRVEPISAQDMKSISRYSETIDDTGTTHLRGVHRRTGETFHITVNPFGRVEGSVGEKVVSFHVTPAS*
Ga0068870_104264073	3300005840	Miscanthus Rhizosphere	PIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA*
Ga0081201_1059442	3300006061	Petroleum Sediment	MPMMTTVIAVALGLAPIPADGTVPFVGADTEKMIGRYSETVDDTGTTHLRGVNRRTGQLYHITVNPYGRVEGSVGDWTVSFNVKTST*
Ga0082029_13697257	3300006169	Termite Nest	MTMMSTIIAVALGLTPVPADGTVALVGADTEQMIGRYSETVDDTGTTHLRGINRKTGQSFHLTVNPHGRVEGSVGDWVVTFRVTRNS*
Ga0105243_111966292	3300009148	Miscanthus Rhizosphere	MTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLKGINRRTGEVFHLTVNPFGRVEGSVGSWVVTFQVSETA*
Ga0105248_116660641	3300009177	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGQPFHLTVNPQGRVEGSVGDWVVTFQVASAA*
Ga0136219_10068901	3300010227	Soil	MVLEEISLQRPRCAKRETRMTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGSWVVTFQVKETA*
Ga0136218_10013643	3300010229	Soil	MTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA*
Ga0126317_106518792	3300011332	Soil	MMSTIVAVALGLTPVGHDGTVQPISADQTRMIGRFTETTDDTGTTHLTGVNRNTGEQFYLTVNPYGRVEGSVGNWAVTFQVSKVA*
Ga0150985_1036329111	3300012212	Avena Fatua Rhizosphere	RRVKKEIIMTMMTTIVAVALGLTPIGYDGTVQPVSDDQARTIGRFSETTDDTGTTHLTGINRKTGEQFYLTVNPYGRVEGSVGNWAVTFQVSKAA*
Ga0150984_1150884601	3300012469	Avena Fatua Rhizosphere	TQQSRRVKKEIIMTMMTTIVAVALGLTPIGYDGTVQPVSDDQARTIGRFSETTDDTGTTHLTGINRKTGEQFYLTVNPYGRVEGSVGNWAVTFQVSKAA*
Ga0157373_104450372	3300013100	Corn Rhizosphere	MVLEEISLQRPRCAKRETRMTIMTTIVAVALGLAPIGKDGIVQPVNAKDAQEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA*
Ga0157371_104794321	3300013102	Corn Rhizosphere	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGKTFHLTVNPQGRVEGSVGDWVVTFQVVSAA*
Ga0157371_105964352	3300013102	Corn Rhizosphere	MVLEEISLQRPRCAKRETKMTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGHYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA*
Ga0132258_101043562	3300015371	Arabidopsis Rhizosphere	MTTMTTIVAVALGLTPVGHDGIAQPANDDQARAIGHFSETTDDTGTTHLRGVNRKTGQDFHLTVNPHGRVEGSVGSWIVTFQVKSAS*
Ga0132258_103128645	3300015371	Arabidopsis Rhizosphere	MTMMTTIVAVALGLTPVGQDGTVQPVSQDQARSIGRYSETTDDTGTTHITGINRNTGQTFYLTVNPHGRVEGSVGEWVVSFQVASAS*
Ga0132258_105694772	3300015371	Arabidopsis Rhizosphere	MTTIVGVALGLAPVQSDGTVQPISESEARLIGRYSETVDDTGTTHLRGVHRRTGQPFHITVNPYGRVEGSVGTKVVTFQVSRAN*
Ga0132255_1005174983	3300015374	Arabidopsis Rhizosphere	MTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVIETA*
Ga0132255_1007345103	3300015374	Arabidopsis Rhizosphere	MMTTIVAVALGLTPVGHDGTVQPISADQERSIGRYSETTDDTGTTHISGVNRNTGQTFYLTVNPHGRVEGSVGEWVVTFQVASVG*
Ga0163161_103287433	3300017792	Switchgrass Rhizosphere	MSMMTTIVAVALGLTPISNDGTVQPISADQARKIGRFAETTDDTGTTHLTGVYRHTGERFYLTINPYGRVEGSVGNLAVTFKVSKTA
Ga0163161_112012611	3300017792	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA
Ga0190275_133045281	3300018432	Soil	MTIMTTIVAVALGLASIGQNGRVELVSAKDAKSISRYSETIDDTGTTHLRGVNRRTGESFHITVNPFGRVEGAVGEKVVSFQVKPAS
Ga0190269_107084712	3300018465	Soil	MTLMSTIVSVALGLTPVPADGKVQHADESATRLIGRYSETTDDTGTTHLKGVNRRTGEYFHITVNPYGRVEGSVGEKIVTFSVATA
Ga0190269_107515892	3300018465	Soil	MTMMTTIIGVALGLTPVPAEGAIVPISAQHDYRIGSFSETTDDTGTTHLIGSDRNTGRPFHITVNPYGRVEGTVGDWEVSFQVKTVS
Ga0190269_113265792	3300018465	Soil	MTMMTTIIGVALGLTPVPAEGAVVPISNQHVERIGRFSETTDDTGTTHLIGTDRNTGQPFHITVNPYGRVEGTVGDWEVSFQVKTVS
Ga0190268_118670521	3300018466	Soil	MVLEEHLLQQQGCDKKGMPMTLMTTIVSVALGLTPVPADGKVQPAGESATRLIGRYSETTDDTGTTHLKGVNRRTGEYFHITVNPFGRVEGSVGEKLVTFNVATAS
Ga0190271_100578521	3300018481	Soil	MTLMTTIVAVALGLTPIPADGKVQPVGDSTAGLIGRYSETTDDTGTTHLKGVNRRTGEFFHITVNPFGRVEGSVGEKVVTFNVAAA
Ga0222622_105141181	3300022756	Groundwater Sediment	MVLEEISPQQSRRVKKEIIMTMMTTIVAVALGLTPIGYDGTVQPVGEDQARTIGRFSETTDDTGTTHLTGINRKTGEQFYLTVNPYGRVE
Ga0207682_100727892	3300025893	Miscanthus Rhizosphere	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGKTFHLTVNPQGRVEGSVGDWVVTFQVASAA
Ga0207688_102382412	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
Ga0207680_105855872	3300025903	Switchgrass Rhizosphere	MTMMTTIVAVALGLAPIGHDGIVQPVSEDQARTAFGRYSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA
Ga0207681_111620332	3300025923	Switchgrass Rhizosphere	MSMMSTIVAVALGLTPVGHDGTVQPISADQTRMIGRFTETTDDTGTTHLTGVNRNTGEQFYLTVNPYGRVEGSVGNWSVTFQVSKVA
Ga0207681_113114012	3300025923	Switchgrass Rhizosphere	MTMMTTILGAALGLTPIQSDGTVQPLSDRDAQIIGRYDETVDDTGTTHLQGVNRRTGEFFHLTVNPFGRVEGSVGAWVVEFQVKSAV
Ga0207681_118225211	3300025923	Switchgrass Rhizosphere	MTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEGSVAGGVVTFNVK
Ga0207650_109504812	3300025925	Switchgrass Rhizosphere	VALGLTPIGQDGVVQPVGKDQARAIGRYSESTDDTGTTHLTGINRKTGQTFHLTVNPQGRVEGSVGDWVVTFQVASAA
Ga0207659_107345082	3300025926	Miscanthus Rhizosphere	MTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEG
Ga0207701_104697712	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MVLEEISLQQPRCVKKEIIMTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLTVTFQVSKAA
Ga0207644_100178394	3300025931	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGQTFHLTVNPQGRVEGSVGDWVVTFQVASAA
Ga0207644_105220282	3300025931	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLTVTFQVSKAA
Ga0207709_118434591	3300025935	Miscanthus Rhizosphere	IPCARRVGMVLEEISLQRPRCAKRETRMTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLKGINRRTGEVFHLTVNPFGRVEGSVGSWVVTFQVSETA
Ga0207711_105940721	3300025941	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGQDGVVQPVSKDQASAIGRYSESTDDTGTTHLTGINRKTGQTFHLTVNPQGRVEGSVGDWVVTFEVASAA
Ga0207651_103602262	3300025960	Switchgrass Rhizosphere	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAIGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNWAVTFQVSKAT
Ga0207668_119679012	3300025972	Switchgrass Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWV
Ga0209973_10674221	3300027252	Arabidopsis Thaliana Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVKAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGSWVVTFQVRETA
Ga0209982_10875601	3300027552	Arabidopsis Thaliana Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEG
Ga0210002_10136772	3300027617	Arabidopsis Thaliana Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLKGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
Ga0268264_127035241	3300028381	Switchgrass Rhizosphere	VALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGN
Ga0247828_110769582	3300028587	Soil	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLKGINRRTGEVFHLTVNPFGRVEGSVGSWVVTFQVSETA
Ga0247818_102384271	3300028589	Soil	MTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFG
Ga0247823_102325744	3300028590	Soil	IVAVALGLTPIPADGKVQPVGDSTADLIGRYSETTDDTGTTHLKGINRRTGEFFHITVNPFGRVEGSVGEKVVTFNVAAAS
Ga0247822_109981841	3300028592	Soil	RSPICRLFSHARRVGMVLEEHPLQQPRCQKKGKLMTLMTTIVAVALGLTPIPADGKVQLPADSTERLIGRYSESTDDTGTTHLKGVNRRTGEVFHLTVNPFGRVEGSVGEKMVTFNVATL
Ga0247822_115758602	3300028592	Soil	TLMTTIVAVALGLTPIPADGKVQPVGDSTAGLIGRYSETTDDTGTTHLKGINRRTGEFFHITVNPFGRVEGSVGEKVVTFNVAAAS
Ga0247820_103948092	3300028597	Soil	MTLMTTIVAVALGLTPIPADGKVQPVGDSTADLIGRYSETTDDTGTTHLKGINRRTGEFFHITVNPFGRVEGSVGEKVVTFNVAAAS
Ga0247820_106154961	3300028597	Soil	PAASKGRSFMTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEGSVAGGVVTFNVKSAV
Ga0247827_100779711	3300028889	Soil	LTPIPADGKVQPVGDSTADLIGRYSETTDDTGTTHLKGINRRTGEFFHITVNPFGRVEGSVGEKVVTFNVAAAS
Ga0307502_101470182	3300031164	Soil	MTVMTTIVAVALGLTPVQGDGTVQPVNDSTTRVIGRYSETTDDTGTTHLQGVNRRTGESFHITVNPYGRVEGSVGEK
Ga0314816_10227541	3300031481	Soil	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGN
Ga0314816_10478712	3300031481	Soil	LGLTPIGHDGTVQPVSEDQARTAFGRYSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLTVTFQVSKAA
Ga0310888_107341501	3300031538	Soil	PRPCARRVGMVLEEISPQQPRCVKKEIIMTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAA
Ga0310887_108085401	3300031547	Soil	MTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEGSV
Ga0307408_1001281802	3300031548	Rhizosphere	MTIMTTIVAVALGLAPIGKDGTVQPVSAKDAHEIGRYSETVDDTGTTHLQGMNRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
Ga0307408_1003582933	3300031548	Rhizosphere	LAAARCQKKGKPMTIMTTIVAVALGLTPIPADGKVQPVGDSTANLIGRYSETTDDTGTTHLKGVNRRTGEIFHLTINPFGRVEGSVGEKVITFNVATLS
Ga0307408_1006752181	3300031548	Rhizosphere	MTIMTTIVAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNW
Ga0307408_1017809871	3300031548	Rhizosphere	MTIMTTIIAVALGLAPIGKDGIVQPVNAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPSGRVEGSVGNWVVTFQVSETA
Ga0307408_1019536021	3300031548	Rhizosphere	MTIMTTIVAVALGIASIGQNGRVELVSAQDAKSISRYSETVDDTGTTHLRGVNRRTGEFFHLTVNPFGRVEGSVGEKVVSFHVSPAS
Ga0307405_105062712	3300031731	Rhizosphere	MTIMTTIVAVALGLASIGQNGRVELVGAQDIKSIGRYSETVDDTGTTHLRGVNRRTGESFHITVNPFGRVEGAVGEKVVSFQVKPAS
Ga0307405_107378361	3300031731	Rhizosphere	TIVAVALGLAPIGKDGIVQPVKAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
Ga0307405_112181592	3300031731	Rhizosphere	MTIMTTIVAVALGLAPIGKDGTVQPVSAKDAHEIGRYSETVDDTGTTHLQGINRRTGELFHLTVNPFGRVEGSVGSWVVTFQVKETA
Ga0307413_100014059	3300031824	Rhizosphere	MTIMTTIVAVALGIASIGQNGRVEPISAQDMKSISRYSETIDDTGTTHLRGVHRRTGESFHITVNPFGRVEGSVGEKVVSFHVTPAS
Ga0307413_111301271	3300031824	Rhizosphere	SLAAARCQKKGKPMTIMTTIVAVALGLTPIPADGKVQPVGDSTANLIGRYSETIDDTGTTHLKGVNRRTGEIFHLTINPFGRVEGSVGEKVVTFNVATLS
Ga0307413_119005381	3300031824	Rhizosphere	MSMMSTIVAVALGLAPIGHDGTVQPVSDDQARSAIGRFSETTDDTGTTHLTGMNRKTGEQFYLTVNPFGRVEGSVGNWAVAFQVSKAA
(restricted) Ga0255338_1000103325	3300031825	Sandy Soil	MTIMTTIVAVALGLAPIGKDGTVQPVSAKDAHEIGRYSETVDDTGTTHLQGINRRTGEVFHLTVNPFGRVEGSVGSWVVTFQVKETA
Ga0310907_101555611	3300031847	Soil	MTMMTTIVGVALGLTPVQTDGTVQPISDGDARIIGRFSETVDDTGTTHLKGVDRRNGEAFHITVNPFGRVEGSVAGGVVTFNVKS
Ga0307410_100574932	3300031852	Rhizosphere	MTMMTTIIGVALGLTPVQTDGTVQLISDHDARLIGRFSESVDDTGTTRLKGVDRRNGESFHLTVNPFGRVEGSVAGGIVTFHVKSAV
Ga0307410_104546872	3300031852	Rhizosphere	MTLMTTIVAVALGLTPIPADGKVQPVGDSTTGLIGRYSETTDDTGTTHLKGVDRRTGEAFHITVNPFGRVEGSVGQKLVTFNVESVS
Ga0307410_119676762	3300031852	Rhizosphere	MTMMSTIVAVALGVAPVNADGTVQPISDKEAHIIGRYSEFIDDTGTTHLRGVNRMTGELFDLTVNPHGRVEGSVGAWIVRFQVASVS
Ga0307406_100697102	3300031901	Rhizosphere	MTIMTTIVAVALGLAPIGKDGTVQPVSAKDAHEIGRYSETVDDTGTTHLRGINRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
Ga0310900_100557633	3300031908	Soil	MVLEEISLQQPRCVKKEIIMTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNWAVTFQVSKAT
Ga0307412_104683492	3300031911	Rhizosphere	MTIMTTIVAVALGLTPIPADGKVQPVGDSTANLIGRYSETTDDTGTTHLKGVNRRTGEIFHLTINPFGRVEGSVGEKVVTF
Ga0307409_1000935574	3300031995	Rhizosphere	MTIMTTIVAVALGIASIGQNGRVEPISAQDMKSISRYSETIDDTGTTHLRGVHRRTGETFHITVNPFGRVEGSVGEKVVSFHVTPAS
Ga0307409_1002075073	3300031995	Rhizosphere	MTIMTTIVAVALGLTPIPADGKVQPVGDSTANLIGRYSETTDDTGTTHLKGVNRRTGEIFHLTINPFGRVEGSVGEKVVTFNVATLS
Ga0307409_1024438152	3300031995	Rhizosphere	MTMMTTIIGVALGLTPVPADGTVVPISTQHDERIGRFSETTDDTGTTHLIGSDRNTGRPFHITVNPYGRVEGTVGDWEVSFQVKTAS
Ga0310903_106651562	3300032000	Soil	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLAVTFQVSKAT
Ga0307416_1004685402	3300032002	Rhizosphere	MTIMTTIVAVALGLTPIPADGKVQPVGDSTANLIGRYSETTDDTGTTHLKGVNRRTGEIFHLTINPFGRVEGSVGEKVITFNVATLS
Ga0307414_118490871	3300032004	Rhizosphere	ISMTIMTTIVAVALGIASIGQNGRVEPISAQDMKSISRYSETVDDTGTTHLRGVHRRTGESFHITVNPFGRVEGSVGEKVVSFHVTPAS
Ga0307414_120712682	3300032004	Rhizosphere	MTIMTTIVAVALGLASIGQNGRVELVGEQDIKSIGRYSETIDDTGTTHLRGVNRRTGESFHITVNAFGRVEGAVGEKVLSFHVSPAS
Ga0307411_102630191	3300032005	Rhizosphere	RMTIMTTIVAVALGLAPIGKDGTVQPVSAKDAHEIGRYSETVDDTGTTHLQGMNRRTGEVFHLTVNPFGRVEGSVGNWVVTFQVSETA
Ga0307411_111033512	3300032005	Rhizosphere	MTLMTTIVAVALGLTPIPADGKVQPVGDSTANLIGRYSETTDDTGTTHLKGVNRRTGEIFHLTINPFGRVEGSVGEKVVTFNVATLS
Ga0307411_114708542	3300032005	Rhizosphere	MTIMTTIVAVALGLASIGQNGRVELVSAKDAKSISRYSETIDDTGTTHLRGVNRRTGESFHITVNPFGRVEGAVGERVVSFHVSSAS
Ga0307411_116546432	3300032005	Rhizosphere	MTMMTTIIGVALGLTPVPADGAVVPISTQYDERIGRFSETTDDTGTTHLIGTDRNTGQPFHITVNPYGRVEGTVG
Ga0310906_111763682	3300032013	Soil	MVLEEISLQQPRCVKKEIIMTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPY
Ga0310890_111207082	3300032075	Soil	MTMMTTIVAVALGLTPIGHDGTVQPVSEDQARTAFGRFSETTDDTGTTHLTGTNRRTGEQFYLTVNPYGRVEGSVGNLTVTFQVSKAA
Ga0315910_100887243	3300032144	Soil	MTMMTTIIGVALGLTPVPANGNVAPLTKADKQMIGRYSETVDDTGTTHLRGMNRLTGELFHITINPYGRVEGSVGDEIVSFHVKRAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters