Basic Information | |
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Family ID | F067966 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 125 |
Average Sequence Length | 51 residues |
Representative Sequence | EIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGPNTVRLS |
Number of Associated Samples | 108 |
Number of Associated Scaffolds | 125 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 96.00 % |
Associated GOLD sequencing projects | 102 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.62 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (54.400 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (12.000 % of family members) |
Environment Ontology (ENVO) | Unclassified (22.400 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (47.200 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 14.86% β-sheet: 16.22% Coil/Unstructured: 68.92% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.62 |
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Pfam ID | Name | % Frequency in 125 Family Scaffolds |
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PF03255 | ACCA | 84.00 |
PF13601 | HTH_34 | 1.60 |
PF00436 | SSB | 0.80 |
PF13527 | Acetyltransf_9 | 0.80 |
PF13620 | CarboxypepD_reg | 0.80 |
PF08818 | DUF1801 | 0.80 |
PF00005 | ABC_tran | 0.80 |
PF01039 | Carboxyl_trans | 0.80 |
COG ID | Name | Functional Category | % Frequency in 125 Family Scaffolds |
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COG0825 | Acetyl-CoA carboxylase alpha subunit | Lipid transport and metabolism [I] | 84.80 |
COG0629 | Single-stranded DNA-binding protein | Replication, recombination and repair [L] | 0.80 |
COG0777 | Acetyl-CoA carboxylase beta subunit | Lipid transport and metabolism [I] | 0.80 |
COG2965 | Primosomal replication protein N | Replication, recombination and repair [L] | 0.80 |
COG4430 | Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family | Function unknown [S] | 0.80 |
COG4799 | Acetyl-CoA carboxylase, carboxyltransferase component | Lipid transport and metabolism [I] | 0.80 |
COG5646 | Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis) | Posttranslational modification, protein turnover, chaperones [O] | 0.80 |
COG5649 | Uncharacterized conserved protein, DUF1801 domain | Function unknown [S] | 0.80 |
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Name | Rank | Taxonomy | Distribution |
All Organisms | root | All Organisms | 55.20 % |
Unclassified | root | N/A | 44.80 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 12.00% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 8.80% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 8.00% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 6.40% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 6.40% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 6.40% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 4.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 4.00% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 3.20% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.20% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.20% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 3.20% |
Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 2.40% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.40% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 2.40% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.40% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.60% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.60% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 1.60% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 1.60% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 1.60% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 1.60% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.60% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 1.60% |
Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 0.80% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.80% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 0.80% |
Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.80% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.80% |
Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 0.80% |
Biofilm | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm | 0.80% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.80% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.80% |
Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.80% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.80% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000655 | Forest soil microbial communities from Amazon forest - 2010 replicate II A100 | Environmental | Open in IMG/M |
3300001139 | Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil | Environmental | Open in IMG/M |
3300005180 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 | Environmental | Open in IMG/M |
3300005186 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 | Environmental | Open in IMG/M |
3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 | Host-Associated | Open in IMG/M |
3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Environmental | Open in IMG/M |
3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Environmental | Open in IMG/M |
3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Host-Associated | Open in IMG/M |
3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
3300005451 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 | Environmental | Open in IMG/M |
3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
3300005552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 | Environmental | Open in IMG/M |
3300005556 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 | Environmental | Open in IMG/M |
3300005559 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 | Environmental | Open in IMG/M |
3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
3300006034 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105 | Environmental | Open in IMG/M |
3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
3300006194 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 | Host-Associated | Open in IMG/M |
3300006196 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 | Host-Associated | Open in IMG/M |
3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
3300006845 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 | Host-Associated | Open in IMG/M |
3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
3300007255 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 | Environmental | Open in IMG/M |
3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
3300010127 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300010142 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300010304 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015 | Environmental | Open in IMG/M |
3300010322 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG | Environmental | Open in IMG/M |
3300010325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG | Environmental | Open in IMG/M |
3300010336 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015 | Environmental | Open in IMG/M |
3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
3300011435 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2 | Environmental | Open in IMG/M |
3300012173 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2 | Environmental | Open in IMG/M |
3300012199 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG | Environmental | Open in IMG/M |
3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
3300012211 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG | Environmental | Open in IMG/M |
3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
3300012484 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510 | Environmental | Open in IMG/M |
3300012902 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1 | Environmental | Open in IMG/M |
3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
3300014154 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015 | Environmental | Open in IMG/M |
3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
3300014878 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10D | Environmental | Open in IMG/M |
3300015201 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2) | Environmental | Open in IMG/M |
3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
3300017656 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015 | Environmental | Open in IMG/M |
3300017659 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG | Environmental | Open in IMG/M |
3300018476 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T | Environmental | Open in IMG/M |
3300018482 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118 | Environmental | Open in IMG/M |
3300019228 | Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300019362 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) | Environmental | Open in IMG/M |
3300021476 | Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) | Environmental | Open in IMG/M |
3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026329 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes) | Environmental | Open in IMG/M |
3300026332 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes) | Environmental | Open in IMG/M |
3300026537 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes) | Environmental | Open in IMG/M |
3300028138 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25 | Environmental | Open in IMG/M |
3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031547 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4 | Environmental | Open in IMG/M |
3300031716 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3 | Environmental | Open in IMG/M |
3300031892 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2 | Environmental | Open in IMG/M |
3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
3300031940 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2 | Environmental | Open in IMG/M |
3300031965 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185 | Environmental | Open in IMG/M |
3300032017 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4 | Environmental | Open in IMG/M |
3300032157 | Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil | Environmental | Open in IMG/M |
3300032211 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1 | Environmental | Open in IMG/M |
3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
3300033417 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155 | Environmental | Open in IMG/M |
3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A100DRAFT_10823221 | 3300000655 | Forest Soil | QPIIDEKRGSAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
JGI10220J13317_121048581 | 3300001139 | Soil | APSDLAERLQPLIDAKKGPAEIIFELDFPGRYTALVRPNPYVKIAPDREFVELVERVCGPNTVRLA* |
Ga0066685_106175822 | 3300005180 | Soil | FELEFPGRFTALVRPNSYVKISPDREFVESVERICGRDTVRLS* |
Ga0066676_107516553 | 3300005186 | Soil | SAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVHLS* |
Ga0066676_110898091 | 3300005186 | Soil | IFELEFPGRFTVLVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0065714_103460142 | 3300005288 | Miscanthus Rhizosphere | LIDEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS* |
Ga0066388_1070003152 | 3300005332 | Tropical Forest Soil | LQPIIDEKRGAAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLN* |
Ga0066388_1074155911 | 3300005332 | Tropical Forest Soil | IIDEKRGTAEIIFELEFPGRFTALVRPNQYVKISPDREFVESVERICGRDTVRLA* |
Ga0066388_1079166732 | 3300005332 | Tropical Forest Soil | FPGRYTAFVRPNPYVKISPDREFVEAVERICGSNTVRLS* |
Ga0066388_1079775002 | 3300005332 | Tropical Forest Soil | LQPIIDEKRGSAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0066388_1082792782 | 3300005332 | Tropical Forest Soil | EIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0068868_1015927432 | 3300005338 | Miscanthus Rhizosphere | DLAAQLQPLIDEKRGPAEIIFELEFPGRYTALVRPNPYVKIAPDREFVECVERICGPNTVRLS* |
Ga0070689_1001591381 | 3300005340 | Switchgrass Rhizosphere | APSDLAARLQPLIDEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS* |
Ga0070687_1009374471 | 3300005343 | Switchgrass Rhizosphere | APSDLAEQLQPVIDEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVECVERICGPNTVRLS* |
Ga0070661_1014136072 | 3300005344 | Corn Rhizosphere | RGPAEIVFELEFPGRYTAYVRPNPYVKISPDREFVEAVERICGSNTVRLS* |
Ga0070668_1022721331 | 3300005347 | Switchgrass Rhizosphere | DEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS* |
Ga0070713_1012010992 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | IIDEKRGSAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLN* |
Ga0070711_1011858601 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | AEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDAVRLN* |
Ga0066681_107887522 | 3300005451 | Soil | QPIIDEKRGSAEVVFELEFPGRYIALVRPNSYVKISPDREFVESVERICGQNTVRLS* |
Ga0070678_1005081251 | 3300005456 | Miscanthus Rhizosphere | PLIDEKRGPAEIIFELEFPGRYTALVRPNPYVKIAPDREFVECVERICGPNTVRLS* |
Ga0066701_105776491 | 3300005552 | Soil | DEKRGSAEVIFELEFPGRFTALVRPNSYVKISPDREFVESVERICGRDTVRLS* |
Ga0066707_106816371 | 3300005556 | Soil | FTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0066707_109887741 | 3300005556 | Soil | IFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLS* |
Ga0066700_106199802 | 3300005559 | Soil | QPIMDEKRGSAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0066705_102997542 | 3300005569 | Soil | GSAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0066905_1019811511 | 3300005713 | Tropical Forest Soil | AEIIFELQYPTYTVLVRPNPYVKISPDREFVESIERICGRDTVRLG* |
Ga0066903_1026124131 | 3300005764 | Tropical Forest Soil | EKRGSAEIVFELEFPGRFTVLVRPNPYVKISPDREFVESVERICGRDTVRLA* |
Ga0066903_1027269521 | 3300005764 | Tropical Forest Soil | IFELEFPGRFTALVRPNQYVKISPDREFVESVERICGRDTVHLA* |
Ga0068858_1002766494 | 3300005842 | Switchgrass Rhizosphere | DRFTAFVRPNPYVKVLPDRELIESIERICGTNTVTLQ* |
Ga0068862_1006144072 | 3300005844 | Switchgrass Rhizosphere | QPLIDEKRGPAEIIFELEFPGRYTALVRPNPYVKIAPDREFVECVERICGPNTVRLS* |
Ga0066656_102453601 | 3300006034 | Soil | DEKRGSAEVIFELEFPGRFTALFRPNPYVKISPDREFVESVERICGRDTVRLS* |
Ga0066652_1006935472 | 3300006046 | Soil | DEKRGSAEVIFELEFPGRFTALVRPNPYVKISPDREFVEYVERICGRNTVQLS* |
Ga0070712_1015005572 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | DEKRGAAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLT* |
Ga0075427_100233001 | 3300006194 | Populus Rhizosphere | AERLQPIIDEKRGSAEIIFELEFPGRFTALVRPNAYVKISPDREFVESVERICGRDTVRLG* |
Ga0075422_103581282 | 3300006196 | Populus Rhizosphere | RYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS* |
Ga0075428_1018488792 | 3300006844 | Populus Rhizosphere | RGSAEVIFELEFPGRYTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0075421_1008045211 | 3300006845 | Populus Rhizosphere | EIVFELEFPGRYTAYVRPNPFVKISPDREFVEAVERICGSNTVRLS* |
Ga0075433_105896142 | 3300006852 | Populus Rhizosphere | LEFPGRYTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0075433_117948722 | 3300006852 | Populus Rhizosphere | GRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0075420_1009130551 | 3300006853 | Populus Rhizosphere | EKKGAAEVVFELEFPGRFTVLVRPNPYVKISPDREFVESVERICGQDTVRLG* |
Ga0068865_1013453312 | 3300006881 | Miscanthus Rhizosphere | PEMSTVFVRPNPYVKVLPDRELIEFIERLCGPGSVNLQ* |
Ga0099791_100535434 | 3300007255 | Vadose Zone Soil | QPIIDEKRGSAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLS* |
Ga0066709_1011173051 | 3300009137 | Grasslands Soil | RYTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0111538_123669191 | 3300009156 | Populus Rhizosphere | APSDLAEQLQPLINEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS* |
Ga0126384_118605722 | 3300010046 | Tropical Forest Soil | DEKRGSAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0126382_122163182 | 3300010047 | Tropical Forest Soil | DEKRGTAEIIFELEFPGRFTALVRPNPYVKIAPDREFVESVERICGRDTVRLG* |
Ga0127489_11147281 | 3300010127 | Grasslands Soil | FPGRFTALVRPNPYVKISPDREFVESVERICGRNTVHLS* |
Ga0127483_10492702 | 3300010142 | Grasslands Soil | SAEVIFELEFPGRFTALVRPNPYVKISPDREFVEYVERICGRNTVQLS* |
Ga0134088_103875921 | 3300010304 | Grasslands Soil | RFTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0134084_101313241 | 3300010322 | Grasslands Soil | EVIFELEFPGRFTALVRPNPYVKISPDREFVEYVERICGRNTVQLS* |
Ga0134064_104073572 | 3300010325 | Grasslands Soil | MDEKRGSAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVHLS* |
Ga0134071_104522442 | 3300010336 | Grasslands Soil | PDLAERLQPIIDEKRGSAEVIFELKFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0126376_131625012 | 3300010359 | Tropical Forest Soil | YTALVRPNPYVKVSTDREFVEAIERICGSNTVRLS* |
Ga0126377_100681961 | 3300010362 | Tropical Forest Soil | RGSAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0126377_115057071 | 3300010362 | Tropical Forest Soil | QYPTYTVLVRPNPYVKISPDREFVESIERICGRDTVRLG* |
Ga0126377_116780931 | 3300010362 | Tropical Forest Soil | EIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGPNTVRLS* |
Ga0126381_1003320174 | 3300010376 | Tropical Forest Soil | GSAEVIVELEFPGQYTAFVRPNPYVKVSTDREFVDAIERICGFNTVRLS* |
Ga0126383_128599681 | 3300010398 | Tropical Forest Soil | GRYTALVRPNPYVKVSTDREFVEAIERICGSNTVRLS* |
Ga0134122_118776541 | 3300010400 | Terrestrial Soil | EIIFELEFPGRYTALVRPNPYVKITPDREFVEYVERICGPNTVRLS* |
Ga0134121_118691163 | 3300010401 | Terrestrial Soil | RYTVFVRPNPYVKVLPDREFVDAVERISGSGTVTLQ* |
Ga0134123_125614381 | 3300010403 | Terrestrial Soil | TAFVRPNPYVKISPDREFVEKIERICGLDTVRLS* |
Ga0150983_158154621 | 3300011120 | Forest Soil | DEKRGSAEVVFELEFPGRFTALVRPNSYVKISPDREFVESVERICGHNTVHLS* |
Ga0137426_11149722 | 3300011435 | Soil | IIFELEFPGRYTAFVRPNPYVKISPDREFVEAVERICGSNTVRLS* |
Ga0137327_10318791 | 3300012173 | Soil | DDKRGPAEIIFELEFPGRYTAFVRPNPYVKISPDREFVEAVERICGSNTVRLS* |
Ga0137383_102411071 | 3300012199 | Vadose Zone Soil | PGRFTALVRPNSYVKISPDREFVESVERICGRDTVRLS* |
Ga0137399_113925702 | 3300012203 | Vadose Zone Soil | PADIAERLQPIIDEKRGPAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVHLS* |
Ga0137380_114792381 | 3300012206 | Vadose Zone Soil | PPDLAERLQPIIDEKRGSAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0137377_114358531 | 3300012211 | Vadose Zone Soil | LQPIIDEKRGPAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLT* |
Ga0150985_1053415132 | 3300012212 | Avena Fatua Rhizosphere | ELEFPGRYTAFVRPNPYVKISPDREFVEAVERICGLDTVRLS* |
Ga0150985_1073598911 | 3300012212 | Avena Fatua Rhizosphere | QPIIDEKRGPAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0150985_1158614191 | 3300012212 | Avena Fatua Rhizosphere | EIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLN* |
Ga0150985_1202247951 | 3300012212 | Avena Fatua Rhizosphere | IDEKRGSADIIFELEFPGRFTVLVRPNPYVKISPDREFVESVERICGHDTVRLN* |
Ga0150984_1074721382 | 3300012469 | Avena Fatua Rhizosphere | FELEFPGRFTALIRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0150984_1087053751 | 3300012469 | Avena Fatua Rhizosphere | PADIAEQLQPIIDEKRGPAEVVFELEFPGRFIALVRPNSYVKISPDREFVESVERICGLNTVRLS* |
Ga0157333_10311621 | 3300012484 | Soil | MKLQPIIDEKRGSAEIVFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLA |
Ga0157291_103584042 | 3300012902 | Soil | AEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS* |
Ga0164302_114690371 | 3300012961 | Soil | PDDIAEQLQPIIDEKRGSAEVVFELEFPGRFTALVRPNQYVKISPDREFVESVERICGRDTVRLA* |
Ga0134075_100653581 | 3300014154 | Grasslands Soil | LEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0134075_103089622 | 3300014154 | Grasslands Soil | ELKFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS* |
Ga0134075_105242651 | 3300014154 | Grasslands Soil | EDVAERLQPIIDEKRGPAEIIFELEFPGRFTALVRPNSYVKISPDREFVESVERICGRDAVRFS* |
Ga0163163_125480462 | 3300014325 | Switchgrass Rhizosphere | MFEIDYPSQRVFVRPNPYVKVLPDREFVEAVERVCGPNTVRLS* |
Ga0182024_115302731 | 3300014501 | Permafrost | APADIAEQLQPLIDEKKGPAEIVFAIEYAGRFTAFVRPNPYVKISPDPEFVAAIERICGEKTVQLS* |
Ga0157377_103827632 | 3300014745 | Miscanthus Rhizosphere | DEKRGSAEIIFELEFPGRFTALVRPNPYVKIAPDREFVEFVERICGPNTVRLS* |
Ga0180065_11608562 | 3300014878 | Soil | IDEKRGPAEIIFELEFPGRYTAFVRPNPYVKISPDREFVEAVERICGSNTVRLS* |
Ga0173478_101320282 | 3300015201 | Soil | RLQPLIDEKRGSAEIIFELEFAGRYTALVRPNPYVKIMPDREFVEYVERICGPNTVRLS* |
Ga0132258_114001361 | 3300015371 | Arabidopsis Rhizosphere | EIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS* |
Ga0132257_1019281382 | 3300015373 | Arabidopsis Rhizosphere | AEIVFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG* |
Ga0132255_1005485354 | 3300015374 | Arabidopsis Rhizosphere | ELIFELEFPGRFTALVRPNPYVKISPDREFVESIERICGQDTVRLG* |
Ga0132255_1024113672 | 3300015374 | Arabidopsis Rhizosphere | LIDEKRGSAEIIFELEFAGRYTALVRPNPYVKIAPDREFVEHVERICGPNTVRLS* |
Ga0182040_110637872 | 3300016387 | Soil | FELEFPGRFTALVRPNQYVKISPDREFVESVERICGRDTVHLA |
Ga0182037_120755011 | 3300016404 | Soil | KRGPAEVIFELEFPGRFTALVRPNQYVKISPDREFVESVERICGRDTVHLA |
Ga0182039_109654051 | 3300016422 | Soil | KRGSAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLN |
Ga0134112_104780042 | 3300017656 | Grasslands Soil | TAEVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS |
Ga0134083_100103181 | 3300017659 | Grasslands Soil | EVIFELKFPGRFTALVRPNPYVKISPDREFVEYVERICGRNTVQLS |
Ga0190274_127721822 | 3300018476 | Soil | YTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0066669_122009372 | 3300018482 | Grasslands Soil | ELEFPGRFTVLVRPNPYVKISPDREFVESVERICGRDTVRLN |
Ga0180119_11226332 | 3300019228 | Groundwater Sediment | SDIAERLQPVIDEKRGPAEIIFELEFPGRYTAFVRPNPYVKISPDREFVEAVERICGSNTVRLS |
Ga0173479_107620242 | 3300019362 | Soil | IFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0187846_103445292 | 3300021476 | Biofilm | AERLQPIIDEKRGSAEVVFELEFPGRYTALVRPNSYVKISPDREFVESVERICGQNTVHL |
Ga0207656_106647222 | 3300025321 | Corn Rhizosphere | FALNFRDRFTAFVRPNPYVKVLPDRELIESIERICGTNTVTLQ |
Ga0207649_104397641 | 3300025920 | Corn Rhizosphere | IIFELEFPGRYTALVRPNPYVKIAPDREFVECVERICGPNTVRLS |
Ga0207659_107773482 | 3300025926 | Miscanthus Rhizosphere | DEKRGSAEIIFELEFPGRFTALVRPNPYVKIAPDREFVEFVERICGPNTVRLS |
Ga0207670_109437672 | 3300025936 | Switchgrass Rhizosphere | SAEVIFELEFPGRYTALVRPNPYVKISPDREFVESVERICGRDTVRLG |
Ga0207669_101384363 | 3300025937 | Miscanthus Rhizosphere | DLAARLQPLINEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0207651_118129912 | 3300025960 | Switchgrass Rhizosphere | SAEIVFELEFPGRFTALVRPNPYVKISPDREFVESVERICGHDTVRLG |
Ga0207708_109225472 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | PGRYTALVRPNPYVKIVPDREFVEHVERICGPNTVRLS |
Ga0207683_105441912 | 3300026121 | Miscanthus Rhizosphere | PLIDEKRGPAEIIFELEFPGRYTALVRPNPYVKIAPDREFVECVERICGPNTVRLS |
Ga0209375_13187471 | 3300026329 | Soil | EVIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRNTVQLS |
Ga0209803_12603462 | 3300026332 | Soil | FELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLS |
Ga0209157_12977092 | 3300026537 | Soil | FELEFPNRYTVVVRPNPYVKVSPDREFVESVERICGPNTVRLS |
Ga0247684_10881492 | 3300028138 | Soil | PIIDEKRGTAEVVFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLG |
Ga0268265_103053583 | 3300028380 | Switchgrass Rhizosphere | ELEFPGRYTALVRPNPYVKIAPDREFVECVERICGPNTVRLS |
Ga0170820_158775101 | 3300031446 | Forest Soil | RLQPIIDEKRGAAEIIFELEFPGRFTALVRPNPYVKISPDREFVESVERICGRDTVRLN |
Ga0310887_103669092 | 3300031547 | Soil | DLAERLQPLIDEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0310813_102391741 | 3300031716 | Soil | QPVIDEKRGSAEVIFELEFPNRYTVMVRPNPYVKISPDRDFVESVERICGPNTVRFS |
Ga0310893_101389602 | 3300031892 | Soil | PLIDEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0306923_101940126 | 3300031910 | Soil | DEKRGSAELVFELEFPGRFTALVRPNSYVKISPDREFVESVERICGQNTVRLS |
Ga0310901_101032821 | 3300031940 | Soil | FPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0326597_112900401 | 3300031965 | Soil | PDDIAEKLQPVIDEKRGPVEVIFELEFPGRYTAMVRPNPYVKISPDREFVESVERICGPNTVRLS |
Ga0310899_105567312 | 3300032017 | Soil | EIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0315912_100291831 | 3300032157 | Soil | IVFALNFPDRFTAFVRPNPYVKVLPDRELIESLERICGTNTVSLQ |
Ga0310896_104574372 | 3300032211 | Soil | APSDLAERLQPLIDEKRGSAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEYVERICGPNTVRLS |
Ga0310810_106084362 | 3300033412 | Soil | RGPAEIIFELEFPGRYTALVRPNPYVKIAPDREFVEFVERICGPNTVRLS |
Ga0214471_113430171 | 3300033417 | Soil | SDLAEQLQPVIDEKRGSAEIIFELDFPGRYTALVRANPYVKIVPDREFVEHVERICGPNTVRLS |
Ga0326726_103855022 | 3300033433 | Peat Soil | AEIVFALNFPDRFTAFVRPNPYVKVLPDRELIESIERICGTNTVTLQ |
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