Metagenome / Metatranscriptome Family F067652

Overview

Basic Information

• Family ID: F067652
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 125
• Average Sequence Length: 45 residues
• Representative Sequence: MNVGDPNGTVVVELLPRESDMPVVVMITEKVKAEGAKGHYYK
• Number of Associated Samples: 102
• Number of Associated Scaffolds: 125

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 85.60 %
• % of genes near scaffold ends (potentially truncated): 22.40 %
• % of genes from short scaffolds (< 2000 bps): 85.60 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (63.200 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (16.000 % of family members)
• Environment Ontology (ENVO): Unclassified (16.800 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (31.200 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 4.29%
  β-sheet: 0.00%
  Coil/Unstructured: 95.71%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF00078	RVT_1	20.80
PF08388	GIIM	17.60
PF01925	TauE	0.80
PF00072	Response_reg	0.80
PF00696	AA_kinase	0.80
PF05426	Alginate_lyase	0.80
PF00361	Proton_antipo_M	0.80
PF02954	HTH_8	0.80
PF01370	Epimerase	0.80
PF01425	Amidase	0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.80
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.80
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.80

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.80 %
Unclassified	root	N/A	63.20 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	36.80 %
Unclassified	root	N/A	63.20 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.80 %
Unclassified	root	N/A	63.20 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	35.20 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.80 %
Unclassified	root	N/A	63.20 %

Level 5

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	34.40 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.80 %
Unclassified	root	N/A	63.20 %

Level 6

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	33.60 %
Balneolaeota	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota	0.80 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.80 %
Unclassified	root	N/A	63.20 %

Level 7

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	3.20 %
Balneolia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia	0.80 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.80 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	1.60 %
Saprospiria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria	2.40 %
Unclassified	root	N/A	63.20 %

Level 8

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.80 %
Balneolales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales	0.80 %
Candidatus Brocadiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae	0.80 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1.60 %
Marinilabiliales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	2.40 %
Saprospirales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales	2.40 %
Unclassified	root	N/A	63.20 %

Level 9

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.80 %
Balneolaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae	0.80 %
Candidatus Brocadia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia	0.80 %
Cyclobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae	1.60 %
Haliscomenobacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae	2.40 %
Prolixibacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae	1.60 %
Unclassified	root	N/A	63.20 %

Level 10

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.80 %
Draconibacterium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Draconibacterium	0.80 %
Haliscomenobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae → Haliscomenobacter	2.40 %
Litoribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Litoribacter	1.60 %
Mariniphaga	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Mariniphaga	0.80 %
Unclassified	root	N/A	63.20 %
unclassified Balneolaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → unclassified Balneolaceae	0.80 %
unclassified Candidatus Brocadia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → unclassified Candidatus Brocadia	0.80 %

Level 11

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.80 %
Balneolaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → unclassified Balneolaceae → Balneolaceae bacterium	0.80 %
Candidatus Brocadia sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → unclassified Candidatus Brocadia → Candidatus Brocadia sp.	0.80 %
Draconibacterium sediminis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Draconibacterium → Draconibacterium sediminis	0.80 %
Haliscomenobacter hydrossis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae → Haliscomenobacter → Haliscomenobacter hydrossis	2.40 %
Litoribacter populi	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Litoribacter → Litoribacter populi	1.60 %
Unclassified	root	N/A	63.20 %
unclassified Mariniphaga	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Mariniphaga → unclassified Mariniphaga	0.80 %

Level 12

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.80 %
Balneolaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → unclassified Balneolaceae → Balneolaceae bacterium	0.80 %
Candidatus Brocadia sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → unclassified Candidatus Brocadia → Candidatus Brocadia sp.	0.80 %
Draconibacterium sediminis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Draconibacterium → Draconibacterium sediminis	0.80 %
Haliscomenobacter hydrossis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Haliscomenobacteraceae → Haliscomenobacter → Haliscomenobacter hydrossis	2.40 %
Litoribacter populi	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Litoribacter → Litoribacter populi	1.60 %
Mariniphaga sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Mariniphaga → unclassified Mariniphaga → Mariniphaga sp.	0.80 %
Unclassified	root	N/A	63.20 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300023177|Ga0233423_10181151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	900
(restricted) 3300024341|Ga0233421_10101568	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	990
(restricted) 3300028581|Ga0247840_10428527	Not Available	636
(restricted) 3300029268|Ga0247842_10087312	Not Available	1947
(restricted) 3300029286|Ga0247841_10531440	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	742
2088090002|CNA_F6ESG4R02HBH5Q	Not Available	507
3300000126|BS_KBB_SWE26_205mDRAFT_c1073909	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Litoribacter → Litoribacter populi	541
3300000228|TB_PC08_66DRAFT_10028929	Not Available	2310
3300000230|TB_GS10_10DRAFT_10053731	Not Available	1820
3300000230|TB_GS10_10DRAFT_10244088	Not Available	542

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	4.80%
Environmental	Environmental	91.20%
Host-Associated	Host-Associated	4.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	46.40%
Bioreactor	Engineered → Bioreactor	1.60%
Plants	Host-Associated → Plants	4.00%
Solid Waste	Engineered → Solid Waste	1.60%
Terrestrial	Environmental → Terrestrial	44.80%
Wastewater	Engineered → Wastewater	1.60%

Category

Habitat	Taxonomy	Distribution
Anaerobic	Engineered → Bioreactor → Anaerobic	1.60%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	1.60%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.60%
Freshwater	Environmental → Aquatic → Freshwater	43.20%
Landfill	Engineered → Solid Waste → Landfill	1.60%
Marine	Environmental → Aquatic → Marine	1.60%
Peat	Environmental → Terrestrial → Peat	5.60%
Peat Moss	Host-Associated → Plants → Peat Moss	1.60%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.80%
Sediment	Environmental → Aquatic → Sediment	1.60%
Soil	Environmental → Terrestrial → Soil	36.80%

Type

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	6.40%
Ice	Environmental → Aquatic → Freshwater → Ice	4.00%
Lake	Environmental → Aquatic → Freshwater → Lake	22.40%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.60%
Pond	Environmental → Aquatic → Freshwater → Pond	0.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	7.20%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.60%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.60%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.60%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	1.60%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	1.60%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	1.60%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.20%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.60%

Subtype

Habitat	Taxonomy	Distribution
Cave Water	Environmental → Aquatic → Freshwater → Groundwater → Cave Water	2.40%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.60%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	4.00%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	17.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.00%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	8.80%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.60%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.80%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.80%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	13.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	7.20%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.60%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.60%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.60%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	1.60%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	1.60%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	1.60%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.80%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.80%

Habitat

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	1.60%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.80%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	16.00%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.80%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.60%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	7.20%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.20%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.80%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.80%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.80%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.80%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	7.20%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	4.00%
Granular Sludge	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge	1.60%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	4.00%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater	2.40%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	1.60%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	1.60%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	1.60%
Marine	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.60%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.80%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.80%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	6.40%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.60%
Sinkhole	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.40%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.60%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.80%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2088090002	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA	Host-Associated
3300000126	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBB sample SWE 26_20.5m	Environmental
3300000228	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- PC08_66	Environmental
3300000230	Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS10_10	Environmental
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300001565	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-5cm-18A)- 1 week illumina new	Environmental
3300002101	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A	Environmental
3300002839	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A and 11-33A (Combined assembly, ASSEMBLY_DATE=20140611)	Environmental
3300002986	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 004-31A	Environmental
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
CNA_00726310	2088090002	Quercus Rhizosphere	MNVGDPNRADGDHLLLRESDMPVVVKIPGKVKTGGAKGHYCKSNFS
BS_KBB_SWE26_205mDRAFT_10739092	3300000126	Marine	RRLHMNVGGPNGTVQVRLLPRESEMPVVVKITGKVKTEGAKGHCYNKRFR*
TB_PC08_66DRAFT_100289292	3300000228	Groundwater	MNVGDPNGTGQVHLLPRESDMLVVVMITGKVKPEGAKGS*
TB_GS10_10DRAFT_100537311	3300000230	Groundwater	MNVGDPNGAVNVQLLPRESEMFVVVKITGKVKPEGAKGHY*
TB_GS10_10DRAFT_102440881	3300000230	Groundwater	MNVGDPNGTVNVQLLPRESEMFVVVKITGKVKPEGAKGHCFKYVSELRT*
JGIcombinedJ13530_1041294541	3300001213	Wetland	MNVGDPNGTVLDQLLPRESDMPVVVMITEKVKAEGVKGHYYK*
A35518A_11775041	3300001565	Permafrost	MNVGDPNRTDIDHLLLRESDMPVVVKIPGKVKTGGAKGHYCKSNFSITNNSQN*
JGI24146J26653_10433052	3300002101	Arctic Peat Soil	MNVGDPNGAGIVHLPPRESDMPVVVMIAEKVKAAGAK
JGIcombinedJ43158_100213723	3300002839	Arctic Peat Soil	MNVGDPNGTGLGHLLPRESDMPVVVKITEKVKAVGAKGHYYKQSFKEC*
JGI24142J45722_10083262	3300002986	Arctic Peat Soil	MNAGDPXKIGLVRLLSRESDMPIVVKITEKVKAVGAKGHYYKDVSKQGLAV*
JGI24142J45722_10753171	3300002986	Arctic Peat Soil	MNVGDPNGMVQVKLLPRESDMLVVVMITEKVKAEGAKGHYYK*
JGI24140J50213_100578001	3300003369	Arctic Peat Soil	MNVGDPNGAEKVQLLPRESEMLVVVKITEKVKAEGAKGHYYEQSFKEC*
JGI24140J50213_101083982	3300003369	Arctic Peat Soil	MNVGDPNETGLVHLLSRESDMPIVVKITEKVKAVGAKGHYYKDVLKL*
Ga0066599_1014370852	3300004282	Freshwater	MNVGDPNGTGKVQLLPRESDMLVVVMITGKLKPEGAKGRNYK*
Ga0007794_102717821	3300004774	Freshwater	MNVGDPNRTVVQLLLRESDMLVIVLIIGKVKPEVAKGHYYKQVLKNVN*
Ga0071116_10581272	3300005077	Sinkhole	MNVGDPNDVGPSNQQARESDMPVVVMTPGKVKAGIAKGHYCKGVSK*
Ga0070678_1009845671	3300005456	Miscanthus Rhizosphere	MNVGDPNEIGVTTENEESDMLVVVKIAEYNKTAGAKGHYYKQIFQ*
Ga0075038_110644971	3300005650	Permafrost Soil	MNVGSPNGTCEVSMLPRESDMPVVVLIPEKVKAGVAKGHYYK*
Ga0074471_100838382	3300005831	Sediment (Intertidal)	MNVGDPNDAISPSQARESDMPVVMMIPEKVKAGGVKGHYYK*
Ga0074471_104744632	3300005831	Sediment (Intertidal)	MNVGDPNRAAEEQLPLRESEMPVVVMITEKVKAEGAKGHYCSDVSKRG*
Ga0075521_106801581	3300006642	Arctic Peat Soil	MNVGDPNGTVPVQLLPRESDMPVVVMITEKVKSEGAKGHYYK*
Ga0075524_101084872	3300006950	Arctic Peat Soil	MNVGDPNGTGLVHLLPRESDMPVVVKITEKVKAVGAKGHYYKQSFKEC*
Ga0079306_10305452	3300007959	Deep Subsurface	MNVGDPNMRGGVHLLIRESDMPVVVKIAEKVKAEGAKGHYYKRSFKAC*
Ga0079306_10356062	3300007959	Deep Subsurface	MNVGDPNGTVVVELLPRESDMPVVVMITEKVKAEGAKGHYYK*
Ga0105105_103920972	3300009009	Freshwater Sediment	MNVGDPNAAVSRSQARESDMPVVVRIPEKVKAGGAKGHCYK*
Ga0105105_108158292	3300009009	Freshwater Sediment	MNVGGPNAAESRPQARESDMPVVVRIPEKVKAGGAKGHCYK
Ga0105093_102508002	3300009037	Freshwater Sediment	GDPNAAVSRSQARESDMPVVVRIPEKVKAGGAKGHCYK*
Ga0105152_100371152	3300009039	Lake Sediment	MNVGDPNGTGEVRQLPRESDMPVVVLITGKVKPEGAKGHYYK*
Ga0105106_110918341	3300009078	Freshwater Sediment	MNVGGPNAAVSRLQARESDMPVVVRIPEKVKAGGAKGHCYK*
Ga0105099_100779842	3300009082	Freshwater Sediment	MNVGGPNDAISPSQARESDMPVVVMIPEKVKAGGVKGHYYK*
Ga0116229_113496291	3300009500	Host-Associated	MNVGGPNGAGGDNPQTRESDMPVVVQITEKVKAEVAKGH
Ga0114951_100776093	3300009502	Freshwater	MNVGDPNGTGGVHLSLRESDMPVVVKITGKVKPEGAKGHYYKWSFKEC*
Ga0123338_100451323	3300009686	Glacier Valley	MNVGDPNGTVVVELLPRESDMPVVVIITEKVKAEGAKGHYYK*
Ga0123337_100117876	3300009695	Glacier Valley	PNGTVVVELLPRESDMPAVVMITEKVKTEVAKGHYCK*
Ga0123337_100448884	3300009695	Glacier Valley	MNVGDPNGTAVVELLPRESDMPVVVIITEKVKAEGAKGHYYK*
Ga0116227_114959012	3300009709	Host-Associated	MNVGGPNGAGGDNPQTRESDMPVVVQITEKVKAEVAKGHYCKQTF*
Ga0116155_101565441	3300009771	Anaerobic Digestor Sludge	MNVGDPNGTGKVPLLPRESDMLVVVMITGKVKPEGAKGS*
Ga0116153_102369402	3300009838	Anaerobic Digestor Sludge	MNVGGPNAVVSRPQARESDMPVLVRTPEKVKSGGAKGHYYK*
Ga0153880_11068832	3300012411	Freshwater Sediment	MNVGDPNGTVLVQLLPRESDMPVVVMMTEKVKAVGAKGHYCKDVSNHGLAI*
Ga0163199_11773031	3300013092	Freshwater	MNVGDPNMTGGVHLMMRESDMPVVVKIAEKVKAEGAKGHCYK*
Ga0163199_11788061	3300013092	Freshwater	NVGDPNMTGSVHLLMRESDMPVVVMIAEKVKAEGAKGHYYKGSFKEC*
Ga0163199_11788071	3300013092	Freshwater	NVGDPNMTGSVHLLMRESDMPVVVMIAEKVKAEGAKGHYYKRSFKEC*
Ga0163199_12936161	3300013092	Freshwater	MNVGDPNMTGDVHLLMRESDMPVVVKIAEKVKAAGAKGHYYKRSFKEC*
Ga0120135_10218832	3300014054	Permafrost	MNVGDPNRADIDHLLLRESDMPVVVKIPGKVKTGGAKGHYCKSNFSITNNSQN*
Ga0172380_105349042	3300014205	Landfill Leachate	MNVGDPNMTGDVHLLMRESDMPVVVKIAEKVKAAGAKGHYYKDVSKQGLAV*
Ga0172379_1000208224	3300014208	Groundwater	MNVGDPNMTGGVHLLMRESDMPVVVKITEKVKAEGAKGHYYKQSFKEC*
Ga0172379_101122631	3300014208	Groundwater	NVGDPNMTGDVHLLMRESDMPVVVKIAEKVKAAGAKGHYYKRSFKAC*
Ga0172379_102149722	3300014208	Groundwater	MNVGDPNMTGDVHLLMRESDMPVVVKIAEKVKAAGAKGHYYK
Ga0172379_104783161	3300014208	Groundwater	NVGDPNMTGDVHLLMRESDMPVVVKIAEKVKAAGAKGHYYKDVSKQGLAV*
Ga0182010_104575392	3300014490	Fen	MNVGDPNGTVVQLLPRESDMPIVVKITGKVKPEGAKGALL*
Ga0182017_102399642	3300014494	Fen	MNVGDPNGADKVQLLPRESDMPVVVKIPEKVKAGGAKGHYCKGVLKKFNKQN*
Ga0182017_110057541	3300014494	Fen	MNVGDPNEDGKSDRQSRESDMPVVVKITGKVKPEGAKGHCYRE
Ga0182011_108697143	3300014496	Fen	MNVGDPNGADKVQLLPRESDMPVVVKIPEKVKAGGAKGHYCKESFKGV*
Ga0182019_106253462	3300014498	Fen	MNVGDPNRTEVQLLLRESDMLVLVKITGKVKPEGAKGHYYK*
Ga0182019_107060801	3300014498	Fen	MNVGDPNGADKVQLLPRESDMPVVVKIPEKVKAGGAKGHYCKGVLKK
Ga0182027_110905142	3300014839	Fen	MNVGDPNRTEVQLLLRESDMLVSVKITGKVKPEGAKGHYYK*
Ga0182027_121106261	3300014839	Fen	MNVGDPNGTGKVQLLLRESDMLVVVKIPEKVKAGGAKGHYCKGVLKKF
Ga0157379_111669892	3300014968	Switchgrass Rhizosphere	MNVGDPNRTERDHLLLRESDMLVVVKIPGKVKTGGAKGHYCKSNFSITNNSQN*
Ga0173480_110054792	3300015200	Soil	MNVGDPNRAEVDHLLLRESDMPIVVKIPGKVKTGGAKGHYCKSNFSITNNSQN*
Ga0190272_101293601	3300018429	Soil	MNAGDPNKADQAHLLLRESDMPVVVKIPGKVKTGGAKGHYCKSNFSLTNNSQN
Ga0190274_103522422	3300018476	Soil	MNVGDPTRADTDHLLLRESDMPVVVMIPGKVKTGGAKGHYCKSNFSITNNSQN
Ga0190274_124838872	3300018476	Soil	MNVGDPSRADIDHLLLRKSDMLVVVQIPGKVKTGVAKGHYCKSNFS
Ga0190271_115109921	3300018481	Soil	MNGGDPNGIDKDHLSLRESDMPVVVKIPGKVKTGGAKGHYCKSNFSLTNNSQN
Ga0190267_104273941	3300019767	Soil	MNVGDPNSRRIPVWLWESDMPVVVMIAEKVKAAGAKGHYCK
Ga0182022_12098891	3300019785	Fen	MNVGYPNGTVVVELLPRESDMLVVVMITGKVKTEVAKGHYCK
Ga0193732_10412332	3300020012	Soil	TLTGQTDQLLLRESDMPILAKIPGKVKAGGAKGHYCKSNFSITNNSQN
Ga0207193_10263642	3300020048	Freshwater Lake Sediment	MNVGDPNGTVDVQLLPRESEMFVVVKITGKVKPEGAKGHCFKYVSELRT
Ga0214088_10297072	3300020814	Granular Sludge	MNVGGPNAVVSRPQARESDMPVLVRTPEKVKSGGAKGHYYK
Ga0214088_10303412	3300020814	Granular Sludge	MNEGGPNAAVSRAQARESDMPVVVMIPEKVKAGGAKGHCYK
Ga0210388_107894102	3300021181	Soil	MNVGDPTEHGMQTRESDMPVVVKKPEKVKAGGVKGHYCKQTFNNNQQQN
Ga0194053_100373552	3300021520	Anoxic Zone Freshwater	MNVGDPNRTVVQLLLRESDMLVIVLIIGKVKPEVAKGHYYKQVLKNVN
Ga0212124_100471373	3300022553	Freshwater	MNVGDPNMTGSVHLLMRESDMPVVVMIAEKVKAEGAKGHYYK
Ga0212124_102465481	3300022553	Freshwater	MNVGDPNMTGSVHLLMRESDMPVVVMIAEKVKAEGAKGHYYKRSFKEC
Ga0212124_103167991	3300022553	Freshwater	MNVGDPNMTGSVHLLMRESDMPVVVMIAEKVKAEGAKGHYYKGSFKEC
Ga0212124_104706681	3300022553	Freshwater	MNVGDPNMTGGVHLMMRESDMPVVVKIAEKVKAEGAKGHCYK
Ga0212088_101534891	3300022555	Freshwater Lake Hypolimnion	MNVGDPNGTVVVELLPRESDMPVVVMITEKVKAEGAKGHYYK
Ga0212090_100682142	3300022561	Glacier Valley	MNVGDPNGTVVVELLPRESDMPVVVIITEKVKAEGAKGHYYK
(restricted) Ga0233423_101811511	3300023177	Freshwater	MNVGDPNGTDKVQLLPRESDMLVVVKITGKVKPEGAKGHNYK
Ga0247763_10783491	3300023274	Plant Litter	MNVGDPNRAEVDHLLLRESDMPIVVKIPGKVKTGGAKGHYCKSNFS
(restricted) Ga0233421_101015681	3300024341	Freshwater	MNVGDPNEGGKSNRQARESDMPVVVKIIGKVKPEGAKGHYYR
Ga0209512_10296581	3300025153	Glacier Valley	PNGTVVVELLPRESDMPAVVMITEKVKTEVAKGHYCK
Ga0207932_11172952	3300025495	Arctic Peat Soil	MNVGDPNGTVLVQLLPRESDMPVVVLITEKVKAVGAKGHYYKDVSKQGLAV
Ga0209430_10227764	3300025575	Arctic Peat Soil	MNVGDPNGTGLGHLLPRESDMPVVVKITEKVKAVGAKGHYYKQSFKEC
Ga0209125_10484262	3300025600	Arctic Peat Soil	MNVGDPNGAGIVHLPPRESDMPVVVMIAEKVKAAGAKGHYCK
Ga0209748_12191061	3300025836	Arctic Peat Soil	MNVGDPNGMVKVEPLPRESDMPVVVLITEKVKAVGAKGHYYKDVSKQGLAV
Ga0209182_100346851	3300025843	Lake Sediment	GDPNGTGEVRQLPRESDMPVVVLITGKVKPEGAKGHYYK
Ga0209538_10391421	3300025846	Arctic Peat Soil	MNVGDPNGMVKVEPLPRESDMPVVVMIAEKVKAEGAKGHCYKRSFKEC
Ga0209124_101735362	3300025852	Arctic Peat Soil	MNVGDPNGTVLVQLLPRESDMPVVVLITEKVKAVGAKGHYYKDVSKQGLAL
Ga0209014_103108991	3300025857	Arctic Peat Soil	MNVGDPNGTGLVHLLPRESDMPVVVKITEKVKAVGAKGHYYKQSFKEC
Ga0209429_100533872	3300025864	Arctic Peat Soil	MNVGDPNGMVKVEPLPRESDMPVVVMIAEKVKAEGAKGHCYK
Ga0209429_101523031	3300025864	Arctic Peat Soil	MNVGDPNGTVPVQLLPRESDMPVVVMITGKVKTEVAKGHYYKDVSKQGLAV
Ga0209540_101215722	3300025888	Arctic Peat Soil	MNVGDPNMTGRVHLLMRESDMPVVVKIAEKVKAEGAKGHYYKQSFKEC
Ga0209585_100589282	3300025891	Arctic Peat Soil	MNVGDPNMTGDVHLLMRESDMPVVVKIAEKVKAAGAKGHYYKRSFKEC
Ga0209585_103805272	3300025891	Arctic Peat Soil	MNVGDPNGTVLVQLLPRESDMPVVVKITEKVKAVGAKGHYYKDVSKQGLAV
Ga0209286_11391762	3300027713	Freshwater Sediment	MNVGGPNAAVSRLQARESDMPVVVRIPEKVKAGGAKGHCYK
Ga0209285_100648701	3300027726	Freshwater Sediment	GDPNAAVSRSQARESDMPVVVRIPEKVKAGGAKGHCYK
Ga0209288_103244891	3300027762	Freshwater Sediment	MNVGDPNGTGTVHLLPRESDMPVVVWIPGKVKPGGAKGHYYKQGFSRC
Ga0209048_104327532	3300027902	Freshwater Lake Sediment	MNVGDPNDAVCPPQARESDMPVVVKIAGKVKPEGAKGHYYKQSF
Ga0265296_12187361	3300028032	Groundwater	MNVGDPNMTGDVHLLMRESDMPVVVKITEKVKAEGAKGHYYKRSFKEC
(restricted) Ga0247840_104285271	3300028581	Freshwater	MNVGDPNGTGEVRQLPRESDMPVVVKITGKVKPEGAKGHYYK
Ga0302206_11821542	3300028734	Fen	MNVGDPNGTVVVELLPRESDMPVIVMITEKVKAEGAKGHYYK
Ga0302292_11123911	3300028738	Fen	MNVGDPNGTVVVELLLRESDMPVVVMITEKVKAEGAKGHYYK
Ga0302215_103636792	3300028864	Fen	MNVGDPNGAEKVHLLSRESEMLVVVKISEKVKAEGAKGHHYEQSFKEC
(restricted) Ga0247842_100873121	3300029268	Freshwater	MNVGGPNGTVLVQLLPRESDMPVVVMITGKVKTVVAKGSLL
(restricted) Ga0247841_105314401	3300029286	Freshwater	MNVGDPNGTVNVQLLPRESEMFVVVKITGKVKPEGAKGHCFKYVSELRT
Ga0265297_107806231	3300029288	Landfill Leachate	MNVGDPNMTGDVHLLMRESDMPVVVKIAEKVKAAGAKGHYYKDVSKQGLAV
Ga0302293_101219192	3300029981	Fen	MNVGDPNGAEKVHLLPRESEMLVVVKISEKVKAEGAKGHYYEQSFKEC
Ga0302210_101599641	3300029995	Fen	MNVGDPNGTVAVELLPRESDMPVVVMIAEKVKAEGAKGHYY
Ga0302271_103095461	3300029998	Bog	MNVGDPNGAEKVHLLPRESEMLVVVKISEKVKAEGAKG
Ga0311348_114565382	3300030019	Fen	MNVGDPNGAEKVHLLPRESEMLVVVKISEKVKAEGA
Ga0170824_1007251541	3300031231	Forest Soil	MNVGDPNRADGDHLLLRESDMPIVVKIPGKVKTGGAKGHYCKSNFSITNNSQN
Ga0315290_100987951	3300031834	Sediment	MNVGDPNDATSPPQARESDMPVVVRIPEKVKAGGAKGHCYKKSFTEYRPD
Ga0326597_114649791	3300031965	Soil	MNVGDPNGCCLAGSMPRESDMPIVVKKPGKVKTGGAKGHYYKNVSERREGWQQ
Ga0315278_122129801	3300031997	Sediment	MNVGGPNGTVLVQSLPRESDMPVVVMITEKVKAEGAKGHYYKYVSKQGLTV
Ga0315272_103666482	3300032018	Sediment	MNVGDPNRAGEVRLLLRESDMPVVVKTSEKVKAERAKGHYYK
Ga0315268_101443363	3300032173	Sediment	MNVGDPNGTVLVQLLPRESDMPVVVTIAGKVKAEVAKGHYYK
Ga0315276_102450401	3300032177	Sediment	MNVGDPNGTETVQLLPRESDMPVVVKIPEKVKAGGAKGHYYKRSFKEC
Ga0315271_104353302	3300032256	Sediment	MNVGDPNMTGSVHLLMRESDMPVVVMIAEKVKAAGAKGHYYKRGFKEC
Ga0315273_115439742	3300032516	Sediment	MNVGDPNGTVLVQSLPRESDMPVVVMITEKVKAEGAKGHYYKYVSKQGLTV
Ga0334722_112294121	3300033233	Sediment	MNVGDPNRAGEVRLLLRESDMPVVVKTSEKVKAERAKG
Ga0316603_120219351	3300033413	Soil	MNVGGPNDAASRPQARESDMPVVVKIPEKVKAGGAKGHCYK
Ga0316601_1002252112	3300033419	Soil	MNVGGPNDAASRPQARESDMPVVVRIPEKVKAGGAKGHYYK
Ga0335010_0560526_1_105	3300034092	Freshwater	MNVGDPNGAVNVQLLPRESEMFVVVKITGKVKPEG
Ga0370490_0323607_24_170	3300034128	Untreated Peat Soil	MNVGDPNGTVVVELLPRESDMPVVVMITEKVKAEVTKGHYYKQSFKEC
Ga0370507_0050693_383_511	3300034158	Untreated Peat Soil	MNVGDPNGTVVVELLPRESDMPVVVMITEKVKAEVTKGHYYK