Metagenome / Metatranscriptome Family F067438

Basic Information
Family ID	F067438
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	58 residues
Representative Sequence	VVGAEESLRIEAGVVVMIAAKNRDAPNARYATGINSITLSQNVYSKPGALFSVNRLSAA
Number of Associated Samples	108
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.40 %
% of genes near scaffold ends (potentially truncated)	14.40 %
% of genes from short scaffolds (< 2000 bps)	77.60 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Most Common Taxonomy
Group	Bacteria (70.400 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.000 % of family members)
Environment Ontology (ENVO)	Unclassified (45.600 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.800 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.29% β-sheet: 0.00% Coil/Unstructured: 74.71%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF00575	S1	29.60
PF10150	RNase_E_G	23.20
PF01479	S4	14.40
PF02545	Maf	1.60
PF01594	AI-2E_transport	0.80
PF13442	Cytochrome_CBB3	0.80
PF01384	PHO4	0.80
PF13749	HATPase_c_4	0.80
PF14579	HHH_6	0.80
PF02021	UPF0102	0.80
PF02620	YceD	0.80
PF13803	DUF4184	0.80
PF01783	Ribosomal_L32p	0.80
PF00561	Abhydrolase_1	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.60
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.80
COG0333	Ribosomal protein L32	Translation, ribosomal structure and biogenesis [J]	0.80
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.80
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	0.80
COG1399	23S rRNA accumulation protein YceD (essential in plants, uncharacterized in bacteria)	Translation, ribosomal structure and biogenesis [J]	0.80

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.40 %
Unclassified	root	N/A	29.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.40 %
Unclassified	root	N/A	29.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.40 %
Unclassified	root	N/A	29.60 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.60 %
Unclassified	root	N/A	29.60 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	2.40 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	32.80 %
Unclassified	root	N/A	29.60 %
bacterium MnTg04	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	2.40 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.60 %
bacterium MnTg04	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	2.40 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.60 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.80 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.60 %
bacterium MnTg04	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	2.40 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1.60 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.80 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.60 %
bacterium MnTg04	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	2.40 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1.60 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.80 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.60 %
bacterium MnTg04	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	2.40 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1.60 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.80 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000546\|LJNas_1013530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	870	Open in IMG/M
3300000904\|JGI12053J12875_101747	Not Available	645	Open in IMG/M
3300001151\|JGI12713J13577_1013057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	717	Open in IMG/M
3300001593\|JGI12635J15846_10247419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1146	Open in IMG/M
3300002245\|JGIcombinedJ26739_100368436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1317	Open in IMG/M
3300003350\|JGI26347J50199_1037124	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300003352\|JGI26345J50200_1039681	Not Available	528	Open in IMG/M
3300003505\|JGIcombinedJ51221_10452763	Not Available	519	Open in IMG/M
3300004100\|Ga0058904_1418733	Not Available	615	Open in IMG/M
3300004104\|Ga0058891_1002423	Not Available	527	Open in IMG/M
3300004138\|Ga0058905_1567286	Not Available	604	Open in IMG/M
3300004631\|Ga0058899_12163402	Not Available	876	Open in IMG/M
3300004631\|Ga0058899_12270411	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300005537\|Ga0070730_10000004	All Organisms → cellular organisms → Bacteria → Proteobacteria	472040	Open in IMG/M
3300005610\|Ga0070763_10344071	Not Available	828	Open in IMG/M
3300005712\|Ga0070764_10461688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	758	Open in IMG/M
3300006050\|Ga0075028_101019566	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300006052\|Ga0075029_100148624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1439	Open in IMG/M
3300006059\|Ga0075017_101391441	Not Available	552	Open in IMG/M
3300006086\|Ga0075019_11086900	Not Available	519	Open in IMG/M
3300007265\|Ga0099794_10813338	Not Available	500	Open in IMG/M
3300009500\|Ga0116229_11129968	Not Available	627	Open in IMG/M
3300009510\|Ga0116230_10074222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3001	Open in IMG/M
3300009624\|Ga0116105_1157206	Not Available	606	Open in IMG/M
3300009627\|Ga0116109_1062512	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300009633\|Ga0116129_1018692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2465	Open in IMG/M
3300009709\|Ga0116227_10987320	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300010341\|Ga0074045_10725068	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300010866\|Ga0126344_1298359	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300011120\|Ga0150983_11812505	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	755	Open in IMG/M
3300012925\|Ga0137419_10951877	Not Available	709	Open in IMG/M
3300012930\|Ga0137407_12183718	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	529	Open in IMG/M
3300014495\|Ga0182015_10171674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1463	Open in IMG/M
3300014501\|Ga0182024_11255541	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300015053\|Ga0137405_1261177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	925	Open in IMG/M
3300015168\|Ga0167631_1029936	All Organisms → cellular organisms → Bacteria → Proteobacteria	876	Open in IMG/M
3300015206\|Ga0167644_1000099	All Organisms → cellular organisms → Bacteria → Proteobacteria	92054	Open in IMG/M
3300015206\|Ga0167644_1004796	All Organisms → cellular organisms → Bacteria → Proteobacteria	7648	Open in IMG/M
3300019184\|Ga0184590_111135	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300019187\|Ga0184584_122085	Not Available	554	Open in IMG/M
3300019889\|Ga0193743_1097011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1116	Open in IMG/M
3300020004\|Ga0193755_1000384	All Organisms → cellular organisms → Bacteria → Proteobacteria	12514	Open in IMG/M
3300020021\|Ga0193726_1027667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2830	Open in IMG/M
3300020021\|Ga0193726_1048926	All Organisms → cellular organisms → Bacteria → Proteobacteria	2024	Open in IMG/M
3300020027\|Ga0193752_1022705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2967	Open in IMG/M
3300020034\|Ga0193753_10012288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5366	Open in IMG/M
3300020034\|Ga0193753_10079096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1683	Open in IMG/M
3300020061\|Ga0193716_1000609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	21797	Open in IMG/M
3300020199\|Ga0179592_10000047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	53970	Open in IMG/M
3300020579\|Ga0210407_10088712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2338	Open in IMG/M
3300020579\|Ga0210407_10095247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2257	Open in IMG/M
3300020580\|Ga0210403_10000031	All Organisms → cellular organisms → Bacteria → Proteobacteria	154996	Open in IMG/M
3300020580\|Ga0210403_10034958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4018	Open in IMG/M
3300020580\|Ga0210403_10992194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	657	Open in IMG/M
3300020581\|Ga0210399_10022606	All Organisms → cellular organisms → Bacteria → Proteobacteria	4988	Open in IMG/M
3300020583\|Ga0210401_10057095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3680	Open in IMG/M
3300021180\|Ga0210396_10024942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5535	Open in IMG/M
3300021401\|Ga0210393_10214935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1556	Open in IMG/M
3300021401\|Ga0210393_10422130	All Organisms → cellular organisms → Bacteria → Proteobacteria	1088	Open in IMG/M
3300021401\|Ga0210393_10498630	All Organisms → cellular organisms → Bacteria → Proteobacteria	994	Open in IMG/M
3300021403\|Ga0210397_10090413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2048	Open in IMG/M
3300021404\|Ga0210389_10599676	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300021405\|Ga0210387_11463837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	585	Open in IMG/M
3300021405\|Ga0210387_11838513	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300021475\|Ga0210392_10034239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3015	Open in IMG/M
3300021475\|Ga0210392_10674974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	768	Open in IMG/M
3300021475\|Ga0210392_11307792	Not Available	542	Open in IMG/M
3300021559\|Ga0210409_10163246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2038	Open in IMG/M
3300021855\|Ga0213854_1136057	Not Available	670	Open in IMG/M
3300022525\|Ga0242656_1133692	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300022525\|Ga0242656_1141268	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300022714\|Ga0242671_1122565	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300022717\|Ga0242661_1003950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1812	Open in IMG/M
3300022733\|Ga0224562_1018160	Not Available	575	Open in IMG/M
3300023056\|Ga0233357_1041803	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300023259\|Ga0224551_1066842	Not Available	629	Open in IMG/M
3300024222\|Ga0247691_1009771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1585	Open in IMG/M
3300025463\|Ga0208193_1010105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2951	Open in IMG/M
3300025633\|Ga0208480_1146888	Not Available	536	Open in IMG/M
3300026490\|Ga0257153_1041694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	946	Open in IMG/M
3300026557\|Ga0179587_10482908	Not Available	812	Open in IMG/M
3300027031\|Ga0208986_1039915	Not Available	512	Open in IMG/M
3300027035\|Ga0207776_1038547	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300027176\|Ga0208992_1008989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1213	Open in IMG/M
3300027432\|Ga0209421_1013296	Not Available	1561	Open in IMG/M
3300027545\|Ga0209008_1016396	All Organisms → cellular organisms → Bacteria → Proteobacteria	1738	Open in IMG/M
3300027605\|Ga0209329_1096076	Not Available	647	Open in IMG/M
3300027610\|Ga0209528_1065901	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium MnTg04	801	Open in IMG/M
3300027660\|Ga0209736_1056392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1109	Open in IMG/M
3300027737\|Ga0209038_10107373	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300027767\|Ga0209655_10089592	All Organisms → cellular organisms → Bacteria → Proteobacteria	1023	Open in IMG/M
3300027855\|Ga0209693_10121107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1295	Open in IMG/M
3300027857\|Ga0209166_10000001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1266628	Open in IMG/M
3300027898\|Ga0209067_10153147	Not Available	1224	Open in IMG/M
3300028016\|Ga0265354_1001357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3561	Open in IMG/M
3300028017\|Ga0265356_1001045	All Organisms → cellular organisms → Bacteria → Proteobacteria	4352	Open in IMG/M
3300028746\|Ga0302233_10285258	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300028813\|Ga0302157_10075524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2215	Open in IMG/M
3300029910\|Ga0311369_10889651	Not Available	712	Open in IMG/M
3300029951\|Ga0311371_11463954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	764	Open in IMG/M
3300029999\|Ga0311339_10500990	Not Available	1235	Open in IMG/M
3300030578\|Ga0210275_10284064	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300030763\|Ga0265763_1008765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	909	Open in IMG/M
3300030846\|Ga0075403_11551217	Not Available	560	Open in IMG/M
3300030862\|Ga0265753_1016021	All Organisms → cellular organisms → Bacteria → Proteobacteria	1061	Open in IMG/M
3300030885\|Ga0265743_109264	Not Available	663	Open in IMG/M
3300030885\|Ga0265743_121390	Not Available	509	Open in IMG/M
3300030923\|Ga0138296_1870900	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300030937\|Ga0138302_1052796	Not Available	579	Open in IMG/M
3300030966\|Ga0075383_11347045	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300030977\|Ga0265721_1001838	All Organisms → cellular organisms → Bacteria → Proteobacteria	841	Open in IMG/M
3300031015\|Ga0138298_1392391	Not Available	583	Open in IMG/M
3300031018\|Ga0265773_1000543	All Organisms → cellular organisms → Bacteria → Proteobacteria	1589	Open in IMG/M
3300031022\|Ga0138301_1118773	Not Available	1344	Open in IMG/M
3300031022\|Ga0138301_1606593	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300031028\|Ga0302180_10657349	Not Available	500	Open in IMG/M
3300031064\|Ga0102767_11349676	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300031469\|Ga0170819_10835247	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300031715\|Ga0307476_10090279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2150	Open in IMG/M
3300031715\|Ga0307476_11328800	Not Available	524	Open in IMG/M
3300031962\|Ga0307479_10826037	Not Available	901	Open in IMG/M
3300032072\|Ga0326631_106695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	706	Open in IMG/M
3300032174\|Ga0307470_10161239	All Organisms → cellular organisms → Bacteria → Proteobacteria	1385	Open in IMG/M
3300032515\|Ga0348332_11197723	Not Available	592	Open in IMG/M
3300032515\|Ga0348332_13963651	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.20%
Host-Associated	Host-Associated	4.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.00%
Aquatic	Environmental → Aquatic	11.20%
Plants	Host-Associated → Plants	4.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.80%
Freshwater	Environmental → Aquatic → Freshwater	7.20%
Peat	Environmental → Terrestrial → Peat	5.60%
Sediment	Environmental → Aquatic → Sediment	4.00%
Peat Moss	Host-Associated → Plants → Peat Moss	2.40%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.80%
Loam	Environmental → Terrestrial → Soil → Loam	17.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.40%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	2.40%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.60%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.60%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.20%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.20%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	2.40%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.60%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.40%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.00%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.20%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.20%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.20%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.40%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.40%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	2.40%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.60%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.60%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.80%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.80%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.80%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.80%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.80%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.80%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.80%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.80%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000546	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled	Host-Associated	Open in IMG/M
3300000904	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3	Environmental	Open in IMG/M
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004100	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF244 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004138	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF246 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015168	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300019184	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019187	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021855	Metatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027176	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030578	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO105-VCO054SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030846	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030885	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030966	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030977	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031018	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031064	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 3C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032072	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI2 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJNas_10135301	3300000546	Quercus Rhizosphere	AGVVRSNAAKNSDAPNARNATGINSITLSQNVYGKPGALFSVNRLSDA*
JGI12053J12875_1017471	3300000904	Forest Soil	MVGAEESLRIEAGVVILLAIRNRGKPSARNATGIISITLSQNVYGKPGAFISVNRLSTAEA*
JGI12713J13577_10130572	3300001151	Forest Soil	MVGAEEESLRIEAGIVVLNAAKNRDTPNARYAAGINSTTLSQNVYSKPGALFSVNRLSAAEA*
JGI12635J15846_102474192	3300001593	Forest Soil	VVGAEESLRIEAGVVMMIAAKNRDVPNARYATGINSITLSQNVYSKPGALFSDNRLSVA*
JGIcombinedJ26739_1003684361	3300002245	Forest Soil	EAGIVMLTAASNRDVPSAKYATGINSITLSQNVYCKPGALFSVNRLSAA*
JGI26347J50199_10371242	3300003350	Bog Forest Soil	VVGAEESLRKKAGVVIMDAAKHRDAPNARYATGINSTTLSQNVYGKPGALFSVNRLFAET
JGI26345J50200_10396811	3300003352	Bog Forest Soil	PTNVVGAEESLRKKAGVVIMDAAKHRDAPNARYATGINSTTLSQNVYGKPGALFSVNRLFAET*
JGIcombinedJ51221_104527631	3300003505	Forest Soil	TNVVGAEESLRIKAGVVIRDAAKHRDTPNARYATGINSTTLSQNVYGKPGALFSVNRLFAET*
Ga0058904_14187332	3300004100	Forest Soil	VVGAEESLRIKAGVVIMDAAKHRDAPNARYATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0058891_10024232	3300004104	Forest Soil	VVGAEESLRIEAGVVVMIAAKNRDAPNARYATGINSITLSQNVYSKPGALFSVNRLSAA*
Ga0058905_15672862	3300004138	Forest Soil	VVGAEESLRIKAGVVIRDAAKHRDAPNARYATGINSTTLSQNVYGKPGALFSVNRLWDAEAH*
Ga0058899_121634022	3300004631	Forest Soil	MVGAEESLRIEAGMAVLNGAKHRDAPNARNATGINSTTLSQNVYSKPGALFSVNRLSSAEA*
Ga0058899_122704112	3300004631	Forest Soil	VVGAEESLRIEAGVVMMIAAKNRDVPNARYATGINSITLSQNVYSKPGALFSVNRLSAA*
Ga0070730_10000004175	3300005537	Surface Soil	MVGTEESLRIEAGMAVLNGAKHRDAPNARNATGINSTTLSQNVYSKPGALFSVNRLSSAEA*
Ga0070763_103440712	3300005610	Soil	VVGAEESLRIKAGVFAKNAAKNSDVPNAKHAAGINSITLNQNVYGKPGALFSVNRLSAA*
Ga0070764_104616882	3300005712	Soil	VIGAEESLRIEAGVVVLNAAKNSDTPSARYATGINSTTLSQNVYGKPGALFSVNRLSAA*
Ga0075028_1010195662	3300006050	Watersheds	MVGAEESLRIKAGVVNMNAANNRDAPIARYAIGTNSTQFCQNVYGKPGALFSVNRLFAET
Ga0075029_1001486242	3300006052	Watersheds	VVGAEESLRIKAGVVINEAAKNSDTPNATYATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0075017_1013914411	3300006059	Watersheds	VVGAEESLRIEAGVVMRDAAKNSDAPNARYATGINSTTLSQNVYVKPGALFSDYRLSVAET*
Ga0075019_110869002	3300006086	Watersheds	VVGAEESLRIKAGVVSWNAASKEQAPNARTATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0099794_108133382	3300007265	Vadose Zone Soil	MVGAEESLRIEAGVVMMNAAKNRDAPNARNATGINSITLNQNVYGKPGALFSVNRLSAA*
Ga0116229_111299682	3300009500	Host-Associated	MVGAEESLRIETGDKPVDTATYRSAPSAKNATGIHSINLSQNVYGKPGALILG*
Ga0116230_100742222	3300009510	Host-Associated	VVGAEESLRIETGDKPVDTATYRNVPSARNATGIHSINLSQNVYGKPGALILG*
Ga0116105_11572062	3300009624	Peatland	VVGAEESLRIKAGVFAKNAAKNRDAPNARTATGINSTTLSQNVYGKPGALFSVNRLSAA*
Ga0116109_10625121	3300009627	Peatland	VVGAEESLRIETGDKPVDTAKKGKVPSASIATGIHSINLSQNVYGKPGALILG*
Ga0116129_10186924	3300009633	Peatland	MVGAEESLRIEAGIVVLNAAKNSDAPNARYATGINSTTLSQNVYSKPGALFSVNRLSAAEA*
Ga0116227_109873201	3300009709	Host-Associated	MVGAEESMRIETGDKPVETAKKRRAPSASNATGIHSINLSQNVYGKPGALILG*
Ga0074045_107250681	3300010341	Bog Forest Soil	VVGAEESLRIKAGVVINDAAKNSDTPNARCATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0126344_12983592	3300010866	Boreal Forest Soil	VVGAEESLRIEAGIVMLDAASNRDVPSAKYATGINSITLSQNVYCKPGALFSDNRCQPPKLKI*
Ga0150983_118125052	3300011120	Forest Soil	MVGAEESLRIEAGIVVLNAAKNSDTPNARYATGINSTTLSQNVYSKPGALFSVNRLSAAEA*
Ga0137419_109518771	3300012925	Vadose Zone Soil	TNMVGAEESLRIEAGVVMMNAAKNRDPPSARNATGINSITLNQNVYGKPGALFSVNRLSAA*
Ga0137407_121837182	3300012930	Vadose Zone Soil	MVGAEESLRIEAGVVMMNAAKNRDAPNARNATGINSITLNQNVYGKPGALFSVN
Ga0182015_101716742	3300014495	Palsa	VVGAEESLRIETGDKPVDTAKKGKVPSARNATGIHSINLSQNVYGKPGALILG*
Ga0182024_112555411	3300014501	Permafrost	MVGAEEESLRIEAGIVVLNAAKNRDTPNARYATGINSTTLSQNVYSKPGALFSVNRLSAA
Ga0137405_12611772	3300015053	Vadose Zone Soil	MVGAEESLRIEAGAVMMNAAKNRDPPSARNATGINSITLNQNVYGKPGALFSVNRLSAA*
Ga0167631_10299362	3300015168	Glacier Forefield Soil	VVGAEESLRIKAGVFAKNAAKNRDAPNARYATGISSTTLSQNVYGKPGALFSVNRLSAA*
Ga0167644_100009981	3300015206	Glacier Forefield Soil	MVGAEESLRIEAGIVALNAAKNRDTPNARSATGINSTTLSQNVYSKPGALFSVNRLSAAEA*
Ga0167644_10047965	3300015206	Glacier Forefield Soil	MVGAEESLRVGARAVVLQAVRNRGKPSANNATGIISITLSQNVYSKPGAFISVNRF*
Ga0184590_1111352	3300019184	Soil	VVGAEESLRIKAGVFAKHAAKNSDAPNAKYAAGINSITLSQNVYGKPGALFSVNRLSSA
Ga0184584_1220852	3300019187	Soil	LVGAEESLRIEAGAVMMNAAKNRDPPSARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0193743_10970112	3300019889	Soil	MVGAEESLRIEAGAVMMNAAKNRAAPNARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0193755_10003843	3300020004	Soil	MVGAEESLRIEAGAVMMNAAKNRDAPSARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0193726_10276673	3300020021	Soil	MVGAEESLRIEAGVVMMNAAKNRDPPNARNAAGINSITLNQNVYGKPGALFSVNRLSAA
Ga0193726_10489262	3300020021	Soil	VVGAEESLRIEAGVVMMDAAKNRAAPIARSATGINSTTLSQNVYVKPGALFSDNRLSAA
Ga0193752_10227052	3300020027	Soil	MVGAEESLRIKGGIVSRGAARNRDAPNAKYATGNNSITLSQNVYVKPGALFSVNRLSKA
Ga0193753_100122883	3300020034	Soil	MKGGTISRDAASKEQAPNAKYATGNNSITLRKNVYGKPGALFSVNRLSKA
Ga0193753_100790963	3300020034	Soil	EAGAVTMNAAKNRDAPNARIATGINSITLNKNVYGKPGALFSVNRLSAA
Ga0193716_100060918	3300020061	Soil	MVGAEESLRIEAGAVMMNAAKNRDAPNARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0179592_100000475	3300020199	Vadose Zone Soil	MVGAEESLRIEAGVVMMNAAKNRDAPNARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0210407_100887123	3300020579	Soil	MVGAEESLRIEAGVVMMNTAKNRDPPSARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0210407_100952471	3300020579	Soil	EESLRIKPGVVAKNEVKNSDTPNARYATGIDCITLSQNVYGKPGALFSVNRLSAA
Ga0210403_1000003119	3300020580	Soil	MIGAEESLRIKPGVVRRNAVKNSDTPNARYATGIDCITLSQNVYGKPGALFSVNRLSAA
Ga0210403_100349582	3300020580	Soil	VVGAEESLRKKAGVVIRDAAKHRDTPNARYATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0210403_109921941	3300020580	Soil	VVGAEESLRIEAGVVVMIAAKNRDAPNARYATGINSITLSQNVYSKPGALFSVNRLSAA
Ga0210399_100226061	3300020581	Soil	VVGAEESLRIEAGVVMMDAAKNRDAPNARYATGRNSTTLSQNVYGKPGALFSVNSLF
Ga0210401_100570952	3300020583	Soil	VVGAEESLRIKAGVVIRDAAKHRDTPNARYATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0210396_100249424	3300021180	Soil	VVGAEESLRIKPGVVAKNEVKNSDTPNARYATGIDCITLSQNVYGKPGALFSVNRLSAA
Ga0210393_102149352	3300021401	Soil	AEESLRIEAGAVMMNAAKNRDPPNARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0210393_104221302	3300021401	Soil	MVGAEESLRIEAGIVVLNAAKNSDTPNARYATGINSTTLSQNVYSKPGALFSVNRLSAAE
Ga0210393_104986301	3300021401	Soil	VVGAEESLRIKAGVVIRDAAKHRDAPNARYATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0210397_100904132	3300021403	Soil	MVGAEESLRIKAGVVSMDAANNRDVPNARYATGINSTTLSKNVYVKPGALFSDNRLSAA
Ga0210389_105996762	3300021404	Soil	MVGAEESLRIKAGVFALGKAKKRDAPNARTATGIISTTSSQNVYSKPGALFSVNRLSDA
Ga0210387_114638372	3300021405	Soil	VVGAEESLRIKAGVFAKNAAKNRDAPNARTATGSNSTTLSQNVYGKPGALFSVNRLSAA
Ga0210387_118385131	3300021405	Soil	VVGAEESLRIKAGVVRSDAAKNSDAPNARYATGINSITLSQNVYGKPGALFSVNRLSDA
Ga0210392_100342392	3300021475	Soil	MKGGTRSRDAASKEKVPSAKHATGNNSITLSQNVYGKPGALFSVNRLSKA
Ga0210392_106749742	3300021475	Soil	MVGAEESLRIKAGVVSMDAANNRDVPNARYATGINSTTLSKNVYVKPGALFSDNRLSDA
Ga0210392_113077922	3300021475	Soil	APTKVVGAEESLRIKAGAAMVDAAKQTITPNAICAAGINSITLSQNVYGKPGALFSDNRLSAAEPKP
Ga0210409_101632461	3300021559	Soil	LRIEAGVAMMDAAKNRDAPNARYATGSNSTTLSQNVYGKPGALFSVNRLFR
Ga0213854_11360571	3300021855	Watersheds	VVGAEESLRIEAGVVMRDAAKNSDAPNARYATGINSTTLSQNVYVKPGALFSDYRLPVAE
Ga0242656_11336921	3300022525	Soil	VVGAEESLRIEAGVAMMDAAKNRDAPNARYATGRNSTTLSQNVYGKPGALFSVNRLSAA
Ga0242656_11412682	3300022525	Soil	MVGAEESLRIEAGMAVLNGAKHRDAPNARNATGINSTTLSQNVYSKPGALFSVNRLSSAE
Ga0242671_11225652	3300022714	Soil	VVGAEESLRIKAGVVRRNAAKNSDVPNAKHAAGINSITLNQNVYGKPGALFSVNRLSAA
Ga0242661_10039502	3300022717	Soil	VVGAEESLRIKPGVFAKYAAKNRDAPNARYATGINCITLSQNVYGKPGALFSVNRLSAA
Ga0224562_10181601	3300022733	Soil	MVGAEESLRIKAGVFAKHAAKNSDAPNAKYAAGINSITLSQNVYGKPGALFSVNRL
Ga0233357_10418032	3300023056	Soil	MVGAEESLRIEAGVVMMNGASKEQAPNARYATGINSITLSQNVYSKPGALFSVNRLSAA
Ga0224551_10668422	3300023259	Soil	VVGAEESLRIKAGVFAKNAAKNSDAPNARYATGINSITLSQNVYGKPGALFSVNRLSAA
Ga0247691_10097712	3300024222	Soil	MVGAEESLRIEAGAVMMNAAKNRDPPSARNATGINSITLNQNVYGKPGALFSVNRLSDA
Ga0208193_10101054	3300025463	Peatland	MVGAEESLRIEAGIVVLNAAKNSDAPNARYATGINSTTLSQNVYSKPGALFSVNRLSAAE
Ga0208480_11468881	3300025633	Arctic Peat Soil	MVGAEESLRIEAGVVIMNAAKNRNTPTARCATGINSITLSQNVYSKPGALFSVNRLSAA
Ga0257153_10416941	3300026490	Soil	VVGAEESLRINPGVFAMNAAKNSDTPNARYATGIDCITLSQNVYGKPGALFSVNRLSAA
Ga0179587_104829082	3300026557	Vadose Zone Soil	TKPGVFAKNTAKNSDTPNARYATGIDCITLSQNVYGKPGALFSVNRLSAA
Ga0208986_10399151	3300027031	Forest Soil	MVGAEESLRIKAGVVSMYAAKNSDAPNARYATGINSTTLSKNVYGKPGALFSDNRLSDA
Ga0207776_10385472	3300027035	Tropical Forest Soil	VVGAEESLRIEAGVATLNAAKNRNPPNAKYATGINSTTLSQNVYGKPRALFSDKCLSVVE
Ga0208992_10089892	3300027176	Forest Soil	MVGAEESLRIEAGVVILLAIRNRGKPSARNATGIISITLSQNVYGKPGAFISVNRLSTAE
Ga0209421_10132962	3300027432	Forest Soil	MVGAEEESLRIEAGIVVLNAAKNRDVPNAKSAAGINSTTLSQNVYSKPGALFSVNRLSAAEA
Ga0209008_10163962	3300027545	Forest Soil	MVGAEEESLRIEAGIVVLNAAKNRDTPNARYAAGINSTTLSQNVYSKPGALFSVNRLSAAEA
Ga0209329_10960761	3300027605	Forest Soil	VVGAEESLRIEAGVVMMIAAKNRDVPNARYATGINSITLSQNVYSKPGALFSVNRLSAA
Ga0209528_10659011	3300027610	Forest Soil	MVGAEESLRIEAGVVMMIAAKNRDVPNARYATGINSITLSQNVYCKPGALFSVNRLSAA
Ga0209736_10563922	3300027660	Forest Soil	VVGAEESLRIEAGVVMMIAAKNRDVPNARYATGINSITLSQNVYSKPGALFSDNRLSVA
Ga0209038_101073731	3300027737	Bog Forest Soil	VVGAEESLRIEAGVVTMDAAKNRDAPSARYATGINSITLNQNVYGKPGALFSVNRLS
Ga0209655_100895921	3300027767	Bog Forest Soil	VVGAEESLRKKAGVVIMDAAKHRDAPNARYATGINSTTLSQNVYGKPGALFSVNRLSAA
Ga0209693_101211072	3300027855	Soil	VVGAEESLRIKAGVFAKNAAKNSDVPNAKHAAGINSITLNQNVYGKPGALFSVNRLSAA
Ga0209166_10000001221	3300027857	Surface Soil	MVGTEESLRIEAGMAVLNGAKHRDAPNARNATGINSTTLSQNVYSKPGALFSVNRLSSAE
Ga0209067_101531472	3300027898	Watersheds	VVGAEESLRIKAGVVSNDAAKNSDTPNATYATGINSTTLSQNVYGKPGALFSVNRLFAET
Ga0265354_10013573	3300028016	Rhizosphere	VVGAEESLRIKAGVFAKNAAKNSDVPNARYAAGINSITLSQNVYGKPGALFSVNRLSAA
Ga0265356_10010453	3300028017	Rhizosphere	MVGAEEESLRIEAGIVVLNAAKNRDTPNARYATGINSTTLSQNVYSKPGALFSVNRLSAAEA
Ga0302233_102852581	3300028746	Palsa	VVGAEEESLRIKAGVFASNAAKNSAAPNAKYAAGINSITLSQNVYGKPGALFSVNRLSAA
Ga0302157_100755243	3300028813	Bog	SCAPTKVVGAEESLRIETGDKPVDTATYRSVPSATNATGIHSINLSQNVYGKPGALILG
Ga0311369_108896511	3300029910	Palsa	VVGAEETLRIESGDKPVDTAKYGSVPSASIATGIHSINLSQNVYGKPGALILG
Ga0311371_114639542	3300029951	Palsa	VVGAEESLRIESGDKPVDTAKKGKVPSASIATGIHSINLSQNVYGKPGALILG
Ga0311339_105009902	3300029999	Palsa	VVGAEESWRIEAGVMTKDAAKNSSVPNARYATGINSITLSQNVYGKPGALFSVNRLLDAEAL
Ga0210275_102840641	3300030578	Soil	MVGAEESLRIKAGVFAKNAAKNSDVPNAKYAAGINSITLSQNVYGKPGALFSVNRLSDA
Ga0265763_10087652	3300030763	Soil	VVGAEESLRIKAGVFAKSAAKNSDVPNAMHAAGINSITLSQNVYGKPGALFSVNRLSSA
Ga0075403_115512171	3300030846	Soil	MVGAEESWRIKGGTISRHAARNRDVPNAKYATGNNSITLSQNVYGKPGALFSVNRLSKA
Ga0265753_10160212	3300030862	Soil	VVGAEESLRIKAGVFAKSAAKNSDVPNAMHAAGINSITLSQNVYGKPGALFSVNRLSAA
Ga0265743_1092641	3300030885	Soil	VVGAEESLRIEAGAVMMNAAKNRDPPNARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0265743_1213902	3300030885	Soil	VVGAEESLRIKAGVFAKSAAKNSDVPNAMHAAGINSITLSQNVYGKPGALFSDNRLSAAEPKL
Ga0138296_18709001	3300030923	Soil	VVGAEESLRIEPGVFAKIAAKNSDTPNARYATGIDCITLSQNVYGKPGALFSVNRSSAA
Ga0138302_10527961	3300030937	Soil	VVGAEESLRIEPGVFAKNAAKNSDTPNARYATGIDCITLSQNVYGKPGALFSVNRSSAA
Ga0075383_113470451	3300030966	Soil	MVGAEESLRMKGGTICRDAASKEQAPNAKHATGNNSITLSQNVYGKPGALFSVNRLSEA
Ga0265721_10018381	3300030977	Soil	MVGAEESLRVGARAVVLRAVRNRGKPSANNATGIISITLSQNVYSKPVAFISVNRF
Ga0138298_13923911	3300031015	Soil	VVGAEESLRIEAGVVMMIAAKNRDVPNARDATGINSITLSQNVYSKPGALFSVNRLSAA
Ga0265773_10005431	3300031018	Soil	VVGAEESLRIKAGVFAKYAAKNSDAPNARYATGINSITLSQNVYGKPGALFSVNRLSAA
Ga0138301_11187731	3300031022	Soil	VVGAEEESLRIEAGVVMMIAAKNRDVPNARYATGINSITLSQNVYSKPGALFSVNRLSAA
Ga0138301_16065932	3300031022	Soil	VVGAEESLRIKAGVVRSNAAKNRDAPNAKYATGINSITLSQNVYGKPGAFISVNRLSTAE
Ga0302180_106573491	3300031028	Palsa	VVGAEESWRIEAGVVTKDAAKNRSEPNARYATGTNSITLSQNVYGKPGALFSVNRLFRRRSS
Ga0102767_113496761	3300031064	Soil	VIGAEESLRIEAGVVNLSAAKNRGKPSAKHATGTNSIITLIQNVYGKPGALFSVNRLSAA
Ga0170819_108352472	3300031469	Forest Soil	MVGAEESLRMKGGTRSRDAARNSDAPNAKYATGNNSITLSQNVYGKPGALFSVNRLSKA
Ga0307476_100902792	3300031715	Hardwood Forest Soil	LVGAEEESLRIEAGIVVLNAAKNRDVPNAKSAAGINSTTLSQNVYSKPGALFSVNRLSAAEA
Ga0307476_113288001	3300031715	Hardwood Forest Soil	SCAPTKVVGAEESLRIETGDKPVDTAKYRSAPSARNATGIHSINLSQNVYGKPGALILG
Ga0307479_108260372	3300031962	Hardwood Forest Soil	MVGAEESLRIEAGVAMMNAAKNSDEPSARCAAGINSITLSQNVYSKPGALFSVNRLSAA
Ga0326631_1066951	3300032072	Soil	MVGAEESLRIKAGVVSMNAANNSDAPNARTATGINSTTLSQNVYGKPGALFSVNRLSAA
Ga0307470_101612392	3300032174	Hardwood Forest Soil	MVGAEESLRIEAGAVMMNAAKNRDPPSARNATGINSITLNQNVYGKPGALFSVNRLSAA
Ga0348332_111977232	3300032515	Plant Litter	VVGAEESLRIKPGVFAKIAAKNSDAPNAKHAAGINSITLSQNVYGKPGALFSVNRLSSA
Ga0348332_139636511	3300032515	Plant Litter	VVGAEESLRVGARAVVLQAVRNGGKPSANNATGIISITLSQNVYSKPVAFISVNRLSAAE

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067438

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign