Metagenome / Metatranscriptome Family F067197

Basic Information
Family ID	F067197
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	51 residues
Representative Sequence	MLKIWGSILMVTSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Number of Associated Samples	92
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	36.51 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (63.492 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (38.095 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (83.333 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 1BBAY92_101201782 2BBAY94_100226171 3BBAY94_101212323 4BBAY93_100583523 5JGI24006J15134_101205273 6JGI24003J15210_100089513 7JGI24003J15210_100113824 8JGI24003J15210_100145116 9JGI24003J15210_100157602 10JGI24003J15210_100434002 11JGI24003J15210_100464162 12JGI24003J15210_100515922 13JGI24003J15210_101379542 14JGI24004J15324_101003593 15JGI24004J15324_101437121 16Ga0055584_1024017452 17Ga0065861_11336922 18Ga0066222_12387072 19Ga0098048_10325551 20Ga0070749_103052593 21Ga0070754_100462494 22Ga0075479_103980171 23Ga0070750_102099853 24Ga0070746_104708672 25Ga0098045_10268002 26Ga0070745_13283472 27Ga0070752_13113291 28Ga0099849_11192414 29Ga0099847_10697642 30Ga0070751_11628072 31Ga0099850_10956484 32Ga0075480_101060231 33Ga0102960_11754061 34Ga0102963_10103416 35Ga0114918_104843172 36Ga0114918_104982373 37Ga0114995_100919674 38Ga0114995_104038973 39Ga0114995_105335413 40Ga0114995_106064071 41Ga0115551_12114801 42Ga0115005_118008231 43Ga0115546_10619625 44Ga0115572_101454214 45Ga0115572_103605372 46Ga0115567_104023361 47Ga0115003_107888913 48Ga0115003_108366891 49Ga0115004_105074203 50Ga0114919_103304802 51Ga0115104_110616202 52Ga0115000_108628592 53Ga0115001_103219783 54Ga0115001_107586522 55Ga0114999_107201792 56Ga0129324_103494593 57Ga0129327_100134545 58Ga0180120_102014891 59Ga0181397_11389043 60Ga0181411_10151686 61Ga0181422_12228822 62Ga0181552_100353433 63Ga0181552_101378122 64Ga0181607_105103952 65Ga0181600_101429684 66Ga0181600_102762511 67Ga0181600_106178352 68Ga0181561_101222854 69Ga0181561_103382823 70Ga0181553_101750531 71Ga0181563_101352251 72Ga0206125_100215434 73Ga0206125_100269545 74Ga0181603_102505813 75Ga0206124_101830763 76Ga0181596_102889573 77Ga0181599_11422873 78Ga0211678_103714102 79Ga0211512_102457271 80Ga0211676_1001898010 81Ga0206677_100044145 82Ga0206682_100877221 83Ga0213863_101429793 84Ga0213863_104472072 85Ga0213869_100813853 86Ga0222718_100186655 87Ga0222719_102988173 88Ga0255775_11301613 89Ga0255769_100867305 90Ga0255752_100921015 91Ga0255752_101746523 92Ga0255763_12745511 93Ga0210003_11751713 94Ga0233451_103173041 95Ga0207905_10017782 96Ga0208791_10493652 97Ga0209535_10261732 98Ga0209535_10346245 99Ga0209535_10556903 100Ga0209535_10655704 101Ga0209535_11608682 102Ga0209634_10215001 103Ga0209634_10576083 104Ga0209634_10943633 105Ga0209337_11162094 106Ga0209095_10309393 107Ga0208899_10972692 108Ga0209929_10379763 109Ga0209710_10070205 110Ga0209710_10782093 111Ga0209710_11491184 112Ga0209502_102939553 113Ga0209711_103297631 114Ga0209830_101558634 115Ga0209830_102599103 116Ga0257114_11732231 117Ga0308127_10360522 118Ga0307488_104205463 119Ga0307488_106963482 120Ga0302114_103831072 121Ga0302121_101213493 122Ga0302125_101141263 123Ga0302125_101844363 124Ga0315322_100297821 125Ga0314858_090638_225_377 126Ga0348335_099349_42_194
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 1BBAY92_101201782 2BBAY93_100583523 3JGI24006J15134_101205273 4JGI24003J15210_100113824 5Ga0075479_103980171 6Ga0114995_104038973 7Ga0115546_10619625 8Ga0115567_104023361 9Ga0211676_1001898010 10Ga0255763_12745511 11Ga0209830_101558634 12Ga0302125_101141263
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1Ga0114918_104982373 2BBAY92_101201782 3BBAY94_100226171 4JGI24006J15134_101205273 5JGI24003J15210_100089513 6JGI24003J15210_100145116 7JGI24003J15210_100434002 8JGI24003J15210_101379542 9JGI24004J15324_101003593 10Ga0098048_10325551 11Ga0070752_13113291 12Ga0114995_106064071 13Ga0115104_110616202 14Ga0114999_107201792 15Ga0181397_11389043 16Ga0206125_100215434 17Ga0206125_100269545 18Ga0206124_101830763 19Ga0211678_103714102 20Ga0211512_102457271 21Ga0206682_100877221
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.28% β-sheet: 0.00% Coil/Unstructured: 48.72%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF07486	Hydrolase_2	24.60
PF05050	Methyltransf_21	3.17
PF04055	Radical_SAM	3.17
PF01970	TctA	2.38
PF14090	HTH_39	0.79
PF10902	WYL_2	0.79
PF00984	UDPG_MGDP_dh	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	24.60
COG1784	TctA family transporter	General function prediction only [R]	2.38
COG3333	TctA family transporter	General function prediction only [R]	2.38
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.79

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.51 %
Unclassified	root	N/A	63.49 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	26.19 %
Unclassified	root	N/A	63.49 %
Viruses	superkingdom	All Organisms → Viruses	10.32 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.97 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	22.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.32 %
Unclassified	root	N/A	63.49 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.05 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.79 %
Unclassified	root	N/A	63.49 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.32 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.79 %
Unclassified	root	N/A	63.49 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	3.17 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.17 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	7.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.32 %
Thaumarchaeota incertae sedis	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis	0.79 %
Unclassified	root	N/A	63.49 %

Name	Rank	Taxonomy	Distribution
Candidatus Nitrosopelagicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus	0.79 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.32 %
Unclassified	root	N/A	63.49 %
unclassified Legionellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales	7.94 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.17 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	7.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.32 %
Unclassified	root	N/A	63.49 %
unclassified Candidatus Nitrosopelagicus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus	0.79 %

Name	Rank	Taxonomy	Distribution
Candidatus Nitrosopelagicus sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	0.79 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	3.17 %
Legionellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	7.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.32 %
Unclassified	root	N/A	63.49 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000947\|BBAY92_10120178	Not Available	695	Open in IMG/M
3300000949\|BBAY94_10022617	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1763	Open in IMG/M
3300000949\|BBAY94_10121232	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300000973\|BBAY93_10058352	Not Available	1003	Open in IMG/M
3300001450\|JGI24006J15134_10120527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	906	Open in IMG/M
3300001460\|JGI24003J15210_10008951	All Organisms → Viruses → Predicted Viral	4121	Open in IMG/M
3300001460\|JGI24003J15210_10011382	All Organisms → cellular organisms → Bacteria → Proteobacteria	3585	Open in IMG/M
3300001460\|JGI24003J15210_10014511	All Organisms → cellular organisms → Bacteria → Proteobacteria	3109	Open in IMG/M
3300001460\|JGI24003J15210_10015760	All Organisms → cellular organisms → Bacteria → Proteobacteria	2964	Open in IMG/M
3300001460\|JGI24003J15210_10043400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium	1541	Open in IMG/M

Showing 1 to 10 of 126 entries

Previous1 2 3 4 5…13Next

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.83%
Host-Associated	Host-Associated	3.17%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	3.17%
Aquatic	Environmental → Aquatic	96.83%

Habitat	Taxonomy	Distribution
Green Algae	Host-Associated → Algae → Green Algae	3.17%
Marine	Environmental → Aquatic → Marine	94.44%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.38%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	19.84%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	3.17%
Inlet	Environmental → Aquatic → Marine → Inlet	0.79%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	17.46%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.79%
Oceanic	Environmental → Aquatic → Marine → Oceanic	41.27%
Pelagic	Environmental → Aquatic → Marine → Pelagic	7.14%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.38%
Strait	Environmental → Aquatic → Marine → Strait	2.38%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.76%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	15.08%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	3.17%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	38.10%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	19.84%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	7.14%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.76%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	3.17%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.38%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.38%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.38%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	11.11%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	3.17%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.59%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.38%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	3.17%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	38.10%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	3.17%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.59%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.79%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.76%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.79%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.38%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.59%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	15.08%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.79%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.38%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.38%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	2.38%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.38%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000947	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92	Host-Associated	Open in IMG/M
3300000949	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94	Host-Associated	Open in IMG/M
3300000973	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93	Host-Associated	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BBAY92_101201782	3300000947	Macroalgal Surface	MLKIWGSILMVVSLIVIAGVPTDNIAIMCLLLVLGMIGFAQGFIMLRMEK*
BBAY94_100226171	3300000949	Macroalgal Surface	MLKIWGSILMITSLFVMAGVPTDNFAIMSILLVIGMIGFAQGLIMLRMEK*
BBAY94_101212323	3300000949	Macroalgal Surface	IMLKIWGSILMVVSLIVIAGVPTDNIAIMCLLLVLGMIGFAQGFIMLRMEK*
BBAY93_100583523	3300000973	Macroalgal Surface	NHWKGSSIMLKIWGSILMITSLFVMAGVPTDNFAIMSILLVIGMIGFAQGLIMLRMEK*
JGI24006J15134_101205273	3300001450	Marine	MLNIWGSILIVTSLFVMAGVPTENLPIMIAIMSLGMVGFILGFIMLRLEK*
JGI24003J15210_100089513	3300001460	Marine	MLKIWGSILMVLSLFVMAGVPTESLPIMIAIILFGMMGFIQGFIMLRLEK*
JGI24003J15210_100113824	3300001460	Marine	MLQIYGSVLMVLSLFVIAGVPGLSLPIMIALLALGMVGFILGFIMLRMEI*
JGI24003J15210_100145116	3300001460	Marine	MVQIWGSILMIVSLIVMAGVPTENFAIMCLLLACGMIGFAQGFIMLRMGK*
JGI24003J15210_100157602	3300001460	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMCLLLVVGMIGFAQGFIMLRLEK*
JGI24003J15210_100434002	3300001460	Marine	MVQIWGSILMVLSLFVMAGVPTDNVAIMCLLLACGMIGFIQGFIMLRMET*
JGI24003J15210_100464162	3300001460	Marine	MVQIWGSILMVVSLFVMAGVPTDNFPIMCLLLACGMIGFAQGFIMLRXEK*
JGI24003J15210_100515922	3300001460	Marine	MLNIWGSILIVTSLFVMAGVPTENXPIMIAIMSLGMVGFILGFIMLRLEK*
JGI24003J15210_101379542	3300001460	Marine	MLQIWGSILMVVSLIVIAGVPTDNLAIMCLLLACGMIGFIQGFIMLRMET*
JGI24004J15324_101003593	3300001472	Marine	MVQIWGSILMVVSLFVMAGVPTDNFPIMCLLLACGMIGFAQGFIMLRMEK*
JGI24004J15324_101437121	3300001472	Marine	FNYWKGSRLMLNIWGSILIVTSLFVMAGVPTENLPIMIAIMALGMVGFILGFIMLRVEK*
Ga0055584_1024017452	3300004097	Pelagic Marine	MLKIWGSILIITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0065861_11336922	3300004448	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK*
Ga0066222_12387072	3300004460	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK*
Ga0098048_10325551	3300006752	Marine	VNYWKGCCIMLQIYGSVLMVLSLYVKAGVPGLSLPIMIALLALAMVGFTLGFIMLRMEI*
Ga0070749_103052593	3300006802	Aqueous	MLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0070754_100462494	3300006810	Aqueous	MLKMWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK*
Ga0075479_103980171	3300006870	Aqueous	TSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0070750_102099853	3300006916	Aqueous	VRQIFDHRKGGSIMLKMWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK*
Ga0070746_104708672	3300006919	Aqueous	MLKTWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK*
Ga0098045_10268002	3300006922	Marine	MLQIYGSVLMVLSLFVMAGVPGLSLPIMIALLALAMVGFTLGFIMLRMEI*
Ga0070745_13283472	3300007344	Aqueous	MLKIWGSILMIISLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0070752_13113291	3300007345	Aqueous	MLKIWGSILMVLSLLVIAGVPTDNLAIMCLLLACGMIGFVQGFIMLRMEK
Ga0099849_11192414	3300007539	Aqueous	WGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK*
Ga0099847_10697642	3300007540	Aqueous	MLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK*
Ga0070751_11628072	3300007640	Aqueous	MLKMWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0099850_10956484	3300007960	Aqueous	ETTNGICIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0075480_101060231	3300008012	Aqueous	LMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK*
Ga0102960_11754061	3300009000	Pond Water	IWGSILMITSLFVMAGVPTDNFAIMSILLVIGMIGFAQGFIMLRMGK*
Ga0102963_10103416	3300009001	Pond Water	MLKIWGSILMITSLFVMAGVPTDNFAIMSILLVIGMIGFAQGFIMLRMGK*
Ga0114918_104843172	3300009149	Deep Subsurface	MLKVWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK*
Ga0114918_104982373	3300009149	Deep Subsurface	MLKIWGSILMVTSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0114995_100919674	3300009172	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFVQGFIMLRLEK*
Ga0114995_104038973	3300009172	Marine	FNYWKGGCIMLKIWGSILMVVSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK*
Ga0114995_105335413	3300009172	Marine	FNYWKGGCIMLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK*
Ga0114995_106064071	3300009172	Marine	MLKIWGSVLMVVSLFVMAGVPTDNVAIMCLLLVVGMIGFAQGFIMLRLEK*
Ga0115551_12114801	3300009193	Pelagic Marine	MLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGLIMLRMEK*
Ga0115005_118008231	3300009432	Marine	MLKIWGSILMVVSLFVMAGVPTDSLPIMIAIMLFGMMGFVQGFIMLRLEK*
Ga0115546_10619625	3300009435	Pelagic Marine	MVQIWGSILMVVSLIVIAGVPTENLAIMCLLLACGMIRFVQGFIMLRMETLYVESSI
Ga0115572_101454214	3300009507	Pelagic Marine	MLKIWGSILIITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK*
Ga0115572_103605372	3300009507	Pelagic Marine	MVQIWGSILMVVSLIVIAGVPTENLAIMCLLLACGMIGFVQGFIMLRTEK*
Ga0115567_104023361	3300009508	Pelagic Marine	LENCTGDLLMVQIWGSILMVVSLIVIAGVPTENLAIMCLLLACGMIGFVQGFIMLRMET*
Ga0115003_107888913	3300009512	Marine	KIWGSILMVVSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK*
Ga0115003_108366891	3300009512	Marine	HWKGGCIMLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGLMGFIQGFIMLRLEK*
Ga0115004_105074203	3300009526	Marine	WQGGCVMLKIWGSILMVVSLFVMAGVPTESLPIMIAIMMFGMMGFVQGFIMLRLEK*
Ga0114919_103304802	3300009529	Deep Subsurface	MLKSWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK*
Ga0115104_110616202	3300009677	Marine	MVQIWGSILMVLSLFVMAGVPTDNLAIMCLLLACGMIGFVQGFIMLKMGK*
Ga0115000_108628592	3300009705	Marine	MLKVWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFVQGFIMLRLEK*
Ga0115001_103219783	3300009785	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGLMGFIQGFIMLRLEK*
Ga0115001_107586522	3300009785	Marine	MLKIWGSILMVVSLFVMAGVPTDNVAIMCLLLVAGMIGFAQGFIMLRLEK*
Ga0114999_107201792	3300009786	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMCLLLIVGMIGFAQGFIMLRLEK*
Ga0129324_103494593	3300010368	Freshwater To Marine Saline Gradient	MLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGCITLRMEK*
Ga0129327_100134545	3300013010	Freshwater To Marine Saline Gradient	MVQIWGSILMVLSLLVIAGVPTDNLAIMCLLLACGMIGFVQGFIMLRMEK*
Ga0180120_102014891	3300017697	Freshwater To Marine Saline Gradient	IMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0181397_11389043	3300017744	Seawater	MLQIYGSVLMVLSLFVMAGVPGLSLPIMIAIMSLAMVGFILGFIMLRLEK
Ga0181411_10151686	3300017755	Seawater	GCGIMLQIYGSVLMVLSLFVMAGVPGLSLPIMIALLALAMVGFTLGFIMLRMEI
Ga0181422_12228822	3300017762	Seawater	MIQIWGSILMVLSLIVMAGVPTENFAIMCLLLACGMIGFVQGFIMLKMGK
Ga0181552_100353433	3300017824	Salt Marsh	MLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0181552_101378122	3300017824	Salt Marsh	MLKTWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0181607_105103952	3300017950	Salt Marsh	MLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLTGIIGFAQGFIMLRMEK
Ga0181600_101429684	3300018036	Salt Marsh	MLKIWGSILMVTSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0181600_102762511	3300018036	Salt Marsh	KIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0181600_106178352	3300018036	Salt Marsh	MLKTWGSILMITSLFVMAGVPTDNFAIMCLLLLTGIIGFAQGFIMLRMEK
Ga0181561_101222854	3300018410	Salt Marsh	HRKGGSIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0181561_103382823	3300018410	Salt Marsh	DHRKGGSIMLKTWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0181553_101750531	3300018416	Salt Marsh	VRQVVNHRKGGSIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0181563_101352251	3300018420	Salt Marsh	KGGSIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0206125_100215434	3300020165	Seawater	MVQIWGSILMVVSLIVIAGVPTENLAIMCLLLACGMIGFVQGFIMLRTEK
Ga0206125_100269545	3300020165	Seawater	MVQIWGSILMVLSLFVMAGVPTENFAIMCVLLTCGMIGFVQGFIMLRMEK
Ga0181603_102505813	3300020174	Salt Marsh	NHRKGGSIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0206124_101830763	3300020175	Seawater	MLQIYGSVLMVLSLFVIAGVPGLSLPIMIAILALGMVGFILGFIMLRMEI
Ga0181596_102889573	3300020177	Salt Marsh	SILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0181599_11422873	3300020178	Salt Marsh	NHRKGGSIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLTGIIGFAQGFIMLRMEK
Ga0211678_103714102	3300020388	Marine	MLQIYGSVLMVISLFVMAGVPGVSLPIMIALLALAMVGFTLGFIMLRMEK
Ga0211512_102457271	3300020419	Marine	MVQIWGSILMVLSLHVMAGVPTEDFAIMCLLLVCGMIGFVQGFIMLKMGK
Ga0211676_1001898010	3300020463	Marine	MVQIWGSILMVLSLLVMAGVPTEDFAIMCLLLVCGMVGFVQGFIMLKMGK
Ga0206677_100044145	3300021085	Seawater	MLQIYGSVLMVLSLFVMAGVPGLSLPIMIALLALAMVGFTLGFIMLRMEK
Ga0206682_100877221	3300021185	Seawater	NYCKGCGVMIQIWGSILMVLSLIVMAGVPTENFAIMCLLLACGMIGFIQGFIMLRTET
Ga0213863_101429793	3300021371	Seawater	MLKIWGSILMITSLFVMAGVPTDNLAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0213863_104472072	3300021371	Seawater	MVQIWGSILMVLSLLVIAGVPTDNLAIMCLLLACGMIGFVQGFIMLRMEK
Ga0213869_100813853	3300021375	Seawater	MLKIWGSILMITSLFVMAGVPTDNFAIMCILLVIGMIGFAQGLIMLRMEK
Ga0222718_100186655	3300021958	Estuarine Water	MLKIWGSILMVLSLFVMAGVPTESLPIMIAIILFGMMGFIQGFIMLRLEK
Ga0222719_102988173	3300021964	Estuarine Water	MLQIWGSILMVVSLIVIAGVPTDNIAIMCLLLVLGMIGFAQGFIMLRMGK
Ga0255775_11301613	3300022907	Salt Marsh	VRQVVNHRKGGSIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLTGIIGFAQGFIMLRMEK
Ga0255769_100867305	3300022927	Salt Marsh	KTWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0255752_100921015	3300022929	Salt Marsh	IWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0255752_101746523	3300022929	Salt Marsh	VNHRKGGSIMLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLTGIIGFAQGFIMLRMEK
Ga0255763_12745511	3300023273	Salt Marsh	MLKTWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIML
Ga0210003_11751713	3300024262	Deep Subsurface	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK
Ga0233451_103173041	3300024301	Salt Marsh	TSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0207905_10017782	3300025048	Marine	MLNIWGSILIVTSLFVMAGVPTENLPIMIAIMSLGMVGFILGFIMLRLEK
Ga0208791_10493652	3300025083	Marine	MLQIYGSVLMVLSLFVMAGVPGLSLPIMIALLALAMVGFTLGFIMLRMEI
Ga0209535_10261732	3300025120	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMCLLLVVGMIGFAQGFIMLRLEK
Ga0209535_10346245	3300025120	Marine	MLQIYGSVLMVLSLFVIAGVPGLSLPIMIALLALGMVGFILGFIMLRMEI
Ga0209535_10556903	3300025120	Marine	MVQIWGSILMIVSLIVMAGVPTENFAIMCLLLACGMIGFAQGFIMLRMGK
Ga0209535_10655704	3300025120	Marine	MVQIWGSILMVLSLFVMAGVPTDNVAIMCLLLACGMIGFIQGFIMLRMET
Ga0209535_11608682	3300025120	Marine	MLQIWGSILMVVSLIVIAGVPTDNLAIMCLLLACGMIGFIQGFIMLRMET
Ga0209634_10215001	3300025138	Marine	MLNIWGSILIVTSLFVMAGVPTENLPIMIAIMALGMVGFILGFIMLRVEK
Ga0209634_10576083	3300025138	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMCLLLIVGMIGFAQGFIMLRLEK
Ga0209634_10943633	3300025138	Marine	VVSLFVMAGVPTDNFPIMCLLLACGMIGFAQGFIMLRMEK
Ga0209337_11162094	3300025168	Marine	MLNIWGSILIVTSLFVIAGVPTENLPIMIAIMSLGMVGFILGFIMLRLEK
Ga0209095_10309393	3300025685	Pelagic Marine	MLKIWGSILIITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK
Ga0208899_10972692	3300025759	Aqueous	MLKIWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIIGFAQGFIMLRMEK
Ga0209929_10379763	3300026187	Pond Water	MLKIWGSILMITSLFVMAGVPTDNFAIMSILLVIGMIGFAQGFIMLRMGK
Ga0209710_10070205	3300027687	Marine	MLKIWGSVLMVVSLFVMAGVPTDNVAIMCLLLVVGMIGFAQGFIMLRLEK
Ga0209710_10782093	3300027687	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFVQGFIMLRLEK
Ga0209710_11491184	3300027687	Marine	IMLKIWGSILMVVSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK
Ga0209502_102939553	3300027780	Marine	EFNYWKGGCIMLKIWGSILMVVSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK
Ga0209711_103297631	3300027788	Marine	KIWGSILMVVSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK
Ga0209830_101558634	3300027791	Marine	LMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK
Ga0209830_102599103	3300027791	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLE
Ga0257114_11732231	3300028196	Marine	MLQIYGSVLMVLSLFVMAGVPGLSLPIMIALLALAMVGFTLGFIMIRMEK
Ga0308127_10360522	3300030715	Marine	MLKIWGSILMVVSLFVMAGVPTDNVAIMCLLLVVGMIGFAQGFIMLRLEK
Ga0307488_104205463	3300031519	Sackhole Brine	MLKVWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK
Ga0307488_106963482	3300031519	Sackhole Brine	MLKIWGSILMVVSLFVMAGVPTDSLPIMIAIMLFGMMGFVQGFIMLRLEK
Ga0302114_103831072	3300031621	Marine	MLKILGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK
Ga0302121_101213493	3300031626	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK
Ga0302125_101141263	3300031638	Marine	MLKIWGSILMVVSLFVMAGVPTESLPIMIAIMLFGMMGFVQGFIM
Ga0302125_101844363	3300031638	Marine	SIMLKIWGSILMVLSLFVMAGVPTESLPIMIAIMVFGMMGFIQGFIMLRLEK
Ga0315322_100297821	3300031766	Seawater	MIQIWGSILMVLSLIVMAGVPTENFAIMCLLLACGMIGFIQGFIMLRTET
Ga0314858_090638_225_377	3300033742	Sea-Ice Brine	MLKIWGSILMVLSLFVMAGVPTESLPIMIAIMLFGMMGFIQGFIMLRLEK
Ga0348335_099349_42_194	3300034374	Aqueous	MLKTWGSILMITSLFVMAGVPTDNFAIMCLLLLIGIVGFAQGFIMLRMEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067197

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences