Metagenome / Metatranscriptome Family F067173

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067173
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	55 residues
Representative Sequence	VPTKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAFLIFAVLWVGFAIWSKTHR
Number of Associated Samples	92
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.81 %
% of genes near scaffold ends (potentially truncated)	29.37 %
% of genes from short scaffolds (< 2000 bps)	80.16 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.286 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (42.063 % of family members)
Environment Ontology (ENVO)	Unclassified (45.238 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.587 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.32% β-sheet: 0.00% Coil/Unstructured: 45.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF01434	Peptidase_M41	16.67
PF01740	STAS	2.38
PF04945	YHS	1.59
PF14534	DUF4440	1.59
PF00069	Pkinase	0.79
PF01554	MatE	0.79
PF13520	AA_permease_2	0.79
PF07228	SpoIIE	0.79
PF13183	Fer4_8	0.79
PF01757	Acyl_transf_3	0.79
PF11752	DUF3309	0.79
PF00239	Resolvase	0.79
PF13185	GAF_2	0.79
PF01695	IstB_IS21	0.79
PF08238	Sel1	0.79
PF03796	DnaB_C	0.79
PF13545	HTH_Crp_2	0.79
PF02201	SWIB	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	16.67
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.17
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.79
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.79
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.79
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.79
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.79
COG5531	DNA-binding SWIB/MDM2 domain	Chromatin structure and dynamics [B]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.29 %
Unclassified	root	N/A	35.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.29 %
Unclassified	root	N/A	35.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.29 %
Unclassified	root	N/A	35.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	49.21 %
Unclassified	root	N/A	35.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	38.10 %
Unclassified	root	N/A	35.71 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.38 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.10 %
Unclassified	root	N/A	35.71 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.59 %
Leptospirales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.10 %
Unclassified	root	N/A	35.71 %
Leptospiraceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.79 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.10 %
Unclassified	root	N/A	35.71 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.79 %
unclassified Leptospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → unclassified Leptospiraceae	0.79 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.10 %
Unclassified	root	N/A	35.71 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.79 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.79 %
Leptospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → unclassified Leptospiraceae → Leptospiraceae bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	38.10 %
Unclassified	root	N/A	35.71 %
Mesorhizobium sp. B2-4-6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-4-6	0.79 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.79 %
Leptospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → unclassified Leptospiraceae → Leptospiraceae bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10033364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300002245\|JGIcombinedJ26739_100162495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2111	Open in IMG/M
3300005171\|Ga0066677_10172378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1197	Open in IMG/M
3300005175\|Ga0066673_10219738	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300005177\|Ga0066690_10615179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300005179\|Ga0066684_10055741	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300005184\|Ga0066671_10551431	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300005334\|Ga0068869_101135362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300005335\|Ga0070666_11482688	Not Available	507	Open in IMG/M
3300005445\|Ga0070708_100975901	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300005454\|Ga0066687_10084498	All Organisms → cellular organisms → Bacteria	1568	Open in IMG/M
3300005468\|Ga0070707_100459389	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300005546\|Ga0070696_100966059	Not Available	710	Open in IMG/M
3300005560\|Ga0066670_10084055	Not Available	1744	Open in IMG/M
3300005576\|Ga0066708_10171066	Not Available	1348	Open in IMG/M
3300005952\|Ga0080026_10075156	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300005995\|Ga0066790_10090746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1313	Open in IMG/M
3300006032\|Ga0066696_10473349	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300006163\|Ga0070715_10020330	All Organisms → cellular organisms → Bacteria	2559	Open in IMG/M
3300006173\|Ga0070716_100839816	Not Available	714	Open in IMG/M
3300006358\|Ga0068871_101375654	Not Available	665	Open in IMG/M
3300006800\|Ga0066660_11575685	Not Available	519	Open in IMG/M
3300006893\|Ga0073928_11008167	Not Available	567	Open in IMG/M
3300007258\|Ga0099793_10483224	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300007258\|Ga0099793_10586731	Not Available	558	Open in IMG/M
3300007265\|Ga0099794_10186448	Not Available	1060	Open in IMG/M
3300009038\|Ga0099829_10022505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4351	Open in IMG/M
3300009038\|Ga0099829_10038471	All Organisms → cellular organisms → Bacteria	3464	Open in IMG/M
3300009038\|Ga0099829_10509023	Not Available	1000	Open in IMG/M
3300009038\|Ga0099829_11065160	Not Available	670	Open in IMG/M
3300009089\|Ga0099828_10108946	Not Available	2406	Open in IMG/M
3300009090\|Ga0099827_10497399	Not Available	1047	Open in IMG/M
3300009090\|Ga0099827_10901733	Not Available	766	Open in IMG/M
3300009090\|Ga0099827_11087624	All Organisms → cellular organisms → Bacteria → Acidobacteria	694	Open in IMG/M
3300009101\|Ga0105247_10250794	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300009137\|Ga0066709_101723217	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300009143\|Ga0099792_10976370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300009147\|Ga0114129_10796991	Not Available	1205	Open in IMG/M
3300010373\|Ga0134128_10014747	All Organisms → cellular organisms → Bacteria → Acidobacteria	9300	Open in IMG/M
3300010396\|Ga0134126_10099482	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3575	Open in IMG/M
3300011269\|Ga0137392_10067049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2750	Open in IMG/M
3300011269\|Ga0137392_11321702	Not Available	580	Open in IMG/M
3300011270\|Ga0137391_10022979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5160	Open in IMG/M
3300011270\|Ga0137391_10104779	All Organisms → cellular organisms → Bacteria → Acidobacteria	2451	Open in IMG/M
3300011270\|Ga0137391_10483156	Not Available	1050	Open in IMG/M
3300011270\|Ga0137391_10541246	Not Available	982	Open in IMG/M
3300012096\|Ga0137389_10090969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2405	Open in IMG/M
3300012096\|Ga0137389_10423602	Not Available	1138	Open in IMG/M
3300012096\|Ga0137389_10714653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	861	Open in IMG/M
3300012096\|Ga0137389_11151494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300012096\|Ga0137389_11521623	Not Available	565	Open in IMG/M
3300012189\|Ga0137388_11098668	Not Available	732	Open in IMG/M
3300012202\|Ga0137363_10063824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-4-6	2687	Open in IMG/M
3300012202\|Ga0137363_10881302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300012205\|Ga0137362_10443884	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300012205\|Ga0137362_10490453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1063	Open in IMG/M
3300012205\|Ga0137362_11597489	Not Available	539	Open in IMG/M
3300012208\|Ga0137376_11747116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300012362\|Ga0137361_10473323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1151	Open in IMG/M
3300012363\|Ga0137390_11478545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300012582\|Ga0137358_10252589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1200	Open in IMG/M
3300012685\|Ga0137397_10184117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1552	Open in IMG/M
3300012917\|Ga0137395_10096301	Not Available	1959	Open in IMG/M
3300012922\|Ga0137394_10841954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300012922\|Ga0137394_10979239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300012927\|Ga0137416_11935269	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300012929\|Ga0137404_10283250	Not Available	1433	Open in IMG/M
3300012929\|Ga0137404_10696161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919	Open in IMG/M
3300012930\|Ga0137407_10008121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7276	Open in IMG/M
3300012930\|Ga0137407_10029788	All Organisms → cellular organisms → Bacteria → Acidobacteria	4239	Open in IMG/M
3300012930\|Ga0137407_10300400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1468	Open in IMG/M
3300012930\|Ga0137407_10929568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300012930\|Ga0137407_12385659	Not Available	506	Open in IMG/M
3300012957\|Ga0164303_10027080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2301	Open in IMG/M
3300012957\|Ga0164303_11119143	Not Available	570	Open in IMG/M
3300012958\|Ga0164299_11618635	Not Available	511	Open in IMG/M
3300012977\|Ga0134087_10278370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300015053\|Ga0137405_1223423	Not Available	526	Open in IMG/M
3300015245\|Ga0137409_10178634	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Leptospirales → Leptospiraceae → unclassified Leptospiraceae → Leptospiraceae bacterium	1925	Open in IMG/M
3300015264\|Ga0137403_10006212	All Organisms → cellular organisms → Bacteria → Acidobacteria	13708	Open in IMG/M
3300015264\|Ga0137403_10999178	Not Available	684	Open in IMG/M
3300018482\|Ga0066669_10702436	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300020583\|Ga0210401_10017054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7007	Open in IMG/M
3300020583\|Ga0210401_10477607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1109	Open in IMG/M
3300020583\|Ga0210401_10822524	Not Available	788	Open in IMG/M
3300021046\|Ga0215015_10761364	Not Available	503	Open in IMG/M
3300021086\|Ga0179596_10230394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	910	Open in IMG/M
3300021088\|Ga0210404_10200522	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1070	Open in IMG/M
3300021178\|Ga0210408_10856589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300021180\|Ga0210396_11613290	Not Available	530	Open in IMG/M
3300021344\|Ga0193719_10234780	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300021432\|Ga0210384_10009570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9987	Open in IMG/M
3300021432\|Ga0210384_10092730	All Organisms → cellular organisms → Bacteria	2712	Open in IMG/M
3300021432\|Ga0210384_11578573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300021478\|Ga0210402_10560727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300021559\|Ga0210409_10085259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2922	Open in IMG/M
3300021559\|Ga0210409_10341772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1346	Open in IMG/M
3300025910\|Ga0207684_10520094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019	Open in IMG/M
3300026035\|Ga0207703_12158078	Not Available	533	Open in IMG/M
3300026294\|Ga0209839_10015302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3093	Open in IMG/M
3300026354\|Ga0257180_1059281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300026469\|Ga0257169_1027717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	833	Open in IMG/M
3300026475\|Ga0257147_1067309	Not Available	546	Open in IMG/M
3300026497\|Ga0257164_1079151	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300026499\|Ga0257181_1085387	Not Available	550	Open in IMG/M
3300026514\|Ga0257168_1023020	Not Available	1299	Open in IMG/M
3300026550\|Ga0209474_10414280	Not Available	696	Open in IMG/M
3300027645\|Ga0209117_1197100	Not Available	509	Open in IMG/M
3300027651\|Ga0209217_1008152	All Organisms → cellular organisms → Bacteria	3469	Open in IMG/M
3300027862\|Ga0209701_10718549	Not Available	513	Open in IMG/M
3300027875\|Ga0209283_10169739	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300027882\|Ga0209590_10112564	All Organisms → cellular organisms → Bacteria → Acidobacteria	1643	Open in IMG/M
3300027894\|Ga0209068_10706023	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300028047\|Ga0209526_10073314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2409	Open in IMG/M
3300028784\|Ga0307282_10661629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300028828\|Ga0307312_10176073	All Organisms → cellular organisms → Bacteria → Acidobacteria	1367	Open in IMG/M
3300031057\|Ga0170834_107357699	Not Available	855	Open in IMG/M
3300031720\|Ga0307469_10226991	Not Available	1482	Open in IMG/M
3300031720\|Ga0307469_10337439	Not Available	1259	Open in IMG/M
3300031720\|Ga0307469_11377683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300031754\|Ga0307475_11008462	Not Available	654	Open in IMG/M
3300031962\|Ga0307479_10028324	All Organisms → cellular organisms → Bacteria → Acidobacteria	5329	Open in IMG/M
3300031962\|Ga0307479_10234937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1808	Open in IMG/M
3300032180\|Ga0307471_100444221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1435	Open in IMG/M
3300032180\|Ga0307471_103346159	Not Available	568	Open in IMG/M
3300034681\|Ga0370546_001863	All Organisms → cellular organisms → Bacteria → Acidobacteria	1840	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.24%
Host-Associated	Host-Associated	4.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.65%
Plants	Host-Associated → Plants	4.76%
Aquatic	Environmental → Aquatic	1.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.59%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.79%
Sediment	Environmental → Aquatic → Sediment	0.79%
Roots	Host-Associated → Plants → Roots	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.95%
Loam	Environmental → Terrestrial → Soil → Loam	10.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.59%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.38%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.59%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	42.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.35%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.59%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100333641	3300001545	Forest Soil	VQRGASIVPTKVHIEWPYVALLVGIVVMVAAAAHLLEAWVAYVIFGVLWVGFAIWSKTHR
JGIcombinedJ26739_1001624954	3300002245	Forest Soil	VQRGASIVPAKDHIDWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKGHR
Ga0066677_101723782	3300005171	Soil	VPAKVRIEWPYVALLVGIVLMVAAATHLLSTWVAYVIFGVLWIGFAIWSKIQR*
Ga0066673_102197382	3300005175	Soil	VPAKVRIEWPYVVLLVGIVLMVAAATHLLSTWVAYVIFGVLWRFAIWSKIHR*
Ga0066690_106151792	3300005177	Soil	VPAKDRIEWPYVVLLVGIVLMVAAATHLLSAWVAYVIFGVLWIGFAIWSKIQR*
Ga0066684_100557412	3300005179	Soil	VPAKVRIEWPYVVLLVGIVLMVAAATHLLSTWVAYVIFGVLWIGFAIWSKIQR*
Ga0066671_105514312	3300005184	Soil	EYKGASIVPAKDRIEWPYVVLLVGIVLMVAAATHLLSAWVAYVIFGVLWIGFAIWSKIHR
Ga0068869_1011353622	3300005334	Miscanthus Rhizosphere	VPAKDHFEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWLKNHR*
Ga0070666_114826881	3300005335	Switchgrass Rhizosphere	MSAKGAIIVPTNDRIEWPYVALLIGIVLMIAAAAHMLPAWVAFVIFGALWVFVMWSKTHR
Ga0070708_1009759011	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VDFRAIRNAGIVATKDHIEWPYVALLVAIVLMVAAAAHLLSAWLAFVSFGALWVGFAIWSKTNR*
Ga0066687_100844982	3300005454	Soil	VPANDRIQWPYVVLLVGIVLMVAAATHLLSAWVAYVIFGVLWIGFAIWSKIQR*
Ga0070707_1004593893	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VGAKGASSMPAKGRIEWPYVTLMAAIALLVAAALHRLPAWVAFLIFAVLWVGFRIWPKR*
Ga0070696_1009660593	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EHRRASFVPTKDRIDWPYVTLLVAIVLVVAATLHLLPIWIAFVIFAVLWIGFAISSKTRR
Ga0066670_100840553	3300005560	Soil	VPAKVRIEWPYVVLLVGIVLMVAAATHLLSTWVAYVIFGVLWIGFAIWSKIHR*
Ga0066708_101710661	3300005576	Soil	VPAKDRIEWPYVVLLVGIVLMVAAATHLLSTWVAYVIFGVLWIGFAIWSKI
Ga0080026_100751563	3300005952	Permafrost Soil	VPAKDHIEWPYVTLVIAIVLMIAGAAHLLPAWVAFVILGALWLFVMWSKTDR*
Ga0066790_100907462	3300005995	Soil	VPAKDHIEWPYVTLVIAIVLMIAGAAHRLPAWVAFVILGALWLFVMWSKTDR*
Ga0066696_104733492	3300006032	Soil	VPAKDRIEWPYVVLLVGIVLMVAAATHLLSVWVAYVIFGVLWIGFAIWSKIHR*
Ga0070715_100203305	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VSAKDIMEWPYVALVVAILVMVAAAAHLLSPWVGYVIFGTLWVGFAIWSKSRR*
Ga0070716_1008398162	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VPAKDHFEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKSHR*
Ga0068871_1013756541	3300006358	Miscanthus Rhizosphere	PYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKNHR*
Ga0066660_115756852	3300006800	Soil	VPAKDRIEWPYVVLLVGIVLMVAAATHLLSVWVAYVIFGVLWRFAIWSKIHR*
Ga0073928_110081672	3300006893	Iron-Sulfur Acid Spring	VQRGASIVPDKEHFDWPYVVLLVGLVVIVAAALHLLSTWVAYALFAVLWIGFAIWPKGHR
Ga0099793_104832242	3300007258	Vadose Zone Soil	MPAKGRIEWPYVTLMAAIALLVAAALHRLPAWVAFLIFAVLWVGFRIWPKR*
Ga0099793_105867311	3300007258	Vadose Zone Soil	STKRRESKGGASIVPTKGRFEWSYVVLLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAIWPKDHR*
Ga0099794_101864483	3300007265	Vadose Zone Soil	VPTKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAFLIFAVLWVGFAIWSKTHR*
Ga0099829_100225058	3300009038	Vadose Zone Soil	MPAKGRIEWPYVTLLVAIVLVVAVALHLLSAWIAFVIFAVLWVGFAIWLKTNR*
Ga0099829_100384712	3300009038	Vadose Zone Soil	VPAKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAYVIFAILWVGFAIWSKTRR*
Ga0099829_105090232	3300009038	Vadose Zone Soil	VPTKGRIDWPYVALPVAIVVMVASALHLLSAWVASVIFAVLWVFVMWSKLADDFGK*
Ga0099829_110651602	3300009038	Vadose Zone Soil	VIASARGASIVPAKDRIEWPFVALLVAIVVMVAAALHLLSAWVAYVIFGVLWVGFAIWSKTHQ*
Ga0099828_101089463	3300009089	Vadose Zone Soil	VPTQNRIEWPYVTLLVTIVLMVAAAAHLLSTWVAFVIFGVLWAGFAMWSKR*
Ga0099827_104973992	3300009090	Vadose Zone Soil	RECEGASIVPTKDRIEWPYVVLLVGIVVMVAATLHLLSAWVAYVIFGALWVGFAIWSKIHR*
Ga0099827_109017333	3300009090	Vadose Zone Soil	VIASARGASIVPTKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAFLIFAVLWVGFAIWSK
Ga0099827_110876242	3300009090	Vadose Zone Soil	VPTRDRIEWPYVVLLVGIVLMVAGALHLLSAWVAYVIFGALWVGFAIWSKDHR*
Ga0105247_102507941	3300009101	Switchgrass Rhizosphere	VPAKDHIEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAILWIGFAIWPKNHR*
Ga0066709_1017232171	3300009137	Grasslands Soil	VGESAKGARIVPTKDYIEWPYVVLLVGIGVMVAAALHLLSAWVAYVIFGALWVGFAIWSK
Ga0099792_109763702	3300009143	Vadose Zone Soil	MPAKGRIEWPYVTLMAAIALLVAAALHRLPAWVAFLIFAVLWVGF
Ga0114129_107969912	3300009147	Populus Rhizosphere	VPTKDRIDWPYVTLLVAIVLVVAATLHLLPIWIAFVIFAVLWIGFAISSKTRR*
Ga0134128_1001474716	3300010373	Terrestrial Soil	VPANDHFEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWLKNHR*
Ga0134126_100994825	3300010396	Terrestrial Soil	VPAKDHFEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKNHR*
Ga0137392_100670494	3300011269	Vadose Zone Soil	VIASARGASIVPAKDRIEWPYVALLVAIVVMVAAALHLLSAWVAYVIFGVLWVGFAIWSKTHQ*
Ga0137392_113217022	3300011269	Vadose Zone Soil	VPTKGRIDWPYVALPVAIVVMVASALHLLSAWVASVIFAVLWVFVIWSKLADDFGK*
Ga0137391_100229797	3300011270	Vadose Zone Soil	VPTRDRIEWPQVALGIVLMVAGALHLLSQWVAYVMFGALWVGFAIWSKGHR*
Ga0137391_101047791	3300011270	Vadose Zone Soil	KLPAGKGGASIVPAKDHIDWPYVVLLVGLVVMVAAAFHLLSTWAAYVIFAVLWIGFAIGPKSHR*
Ga0137391_104831561	3300011270	Vadose Zone Soil	VPAKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAYVIFAILWVGF
Ga0137391_105412462	3300011270	Vadose Zone Soil	VNPEGASIVPAKGRFEWSYVALLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAIGPKGHR*
Ga0137389_100909693	3300012096	Vadose Zone Soil	VPTKDRIEWPYVVLLVGIVVMVAATLHLLSAWVAYVIFGALWVGFAIWSKIHR*
Ga0137389_104236023	3300012096	Vadose Zone Soil	MPTKDRIDWPYVTLLVAIVLMVAAALHLSSVLVAFVIFAVLWVGFAIWPKR*
Ga0137389_107146533	3300012096	Vadose Zone Soil	VSARGQSIVPTKDRGDLPFVTLLVAIVLVVAAALHLLSTWVAYVVLGALWVGFAMWSKTHR*
Ga0137389_111514941	3300012096	Vadose Zone Soil	MPTKDHLEWPYVALLVAIVLMIAGALHLLSTWVAFVIFAVLWVFVIWSKLADDFGK*
Ga0137389_115216231	3300012096	Vadose Zone Soil	GANIMPAKDRTEWPYVVLLIGIVLMVAAALHLLSVSVAYVIFAVLWVGFAIWPKTHR*
Ga0137388_110986681	3300012189	Vadose Zone Soil	VPAKDRIDWPYVALLVAIVLMVAAALHLLSTWLAFVIFAVLWIGFAIWSTTRR*
Ga0137363_100638241	3300012202	Vadose Zone Soil	LSQRGASIVPTKGRFEWSYVALLVGLVVMVAAAFHLLSAWAAYVIFVVLWIGFAIGPKGHR*
Ga0137363_108813021	3300012202	Vadose Zone Soil	VPAKDHIDWPYVVLLVGLVVMVAAAFHLLSTWAAYVIFAVLWI
Ga0137362_104438843	3300012205	Vadose Zone Soil	VPAKDHIDWPYVVLLVGLVVMVAAALHLLSAWVACVIFAVLWIGFAIW
Ga0137362_104904532	3300012205	Vadose Zone Soil	VPTKGRFEWSYVVLLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAIGPKGHR*
Ga0137362_115974891	3300012205	Vadose Zone Soil	MPAKDRTEWPYVVLLIGIVLMVAAALHLLSVSVAYVIFAVLWVGFAIWPKTHR*
Ga0137376_117471161	3300012208	Vadose Zone Soil	VGVNAKGASIVPTKDHIEWPYVVLLVGIGVMVAAGLHLLSAWVAYVIFGALWVGFAIWSKTHR*
Ga0137361_104733232	3300012362	Vadose Zone Soil	VPTKDRIEWPYVVLLVGMVVMVAAALHLLSAWVAFLIFAVLWVGFAIWSKTHR*
Ga0137390_114785452	3300012363	Vadose Zone Soil	SKRAKLPAGKGGASIVPAKDHIDWPYVVLLVGLVVMVAAALHLLSAWVACVIFAVLWIGFAIWPKSHR*
Ga0137358_102525892	3300012582	Vadose Zone Soil	VPTKGRFEWSYVVLLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAIWPKDHR*
Ga0137397_101841173	3300012685	Vadose Zone Soil	VPAKDHIDWPYVVLLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAIGPKGHR*
Ga0137395_100963014	3300012917	Vadose Zone Soil	DWPYVALLVAIVLMVAAAAHLLSAWVAFVIFAVLWIGFAIGPKGHR*
Ga0137394_108419542	3300012922	Vadose Zone Soil	VPTKDRIEWPYVVLLVGIIVMVAAALHLLSAWVAFLIFAVLWVGFAIWSKTHR*
Ga0137394_109792392	3300012922	Vadose Zone Soil	VPTKGPFEWSYVALLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAIGPKGHR*
Ga0137416_119352691	3300012927	Vadose Zone Soil	ASIVPTKFPIEWPYVALLIAIVLMVAAAAHLLSAWVAYVIFGGLWVGFAIWSKGHR*
Ga0137404_102832501	3300012929	Vadose Zone Soil	NIMPAKDRTEWPYVVLLIGIVLMVAAALHLLSVSVAYVIFAVLWVGFAIWPKTHR*
Ga0137404_106961612	3300012929	Vadose Zone Soil	VPTKDHIEWPYVVLLVGIVVMVAAALHLLSAWVAFLIFAVLWVGFAIWSKTHR*
Ga0137407_1000812111	3300012930	Vadose Zone Soil	VPTKCHIEWPYVALLIAIVLMIATTAHLLSAWVLYLIFGALWVFVMWSKTRR*
Ga0137407_100297889	3300012930	Vadose Zone Soil	VPTKGPFEWSYVALLVGLVVMVAAAFHLLSSWVAYVIFAVLWIGFAIGPKGHR*
Ga0137407_103004004	3300012930	Vadose Zone Soil	VPAKDHIDWPYVVLLVGLFMIVAAALHLLSAWVACVIFAVLWIGFAIWP
Ga0137407_109295681	3300012930	Vadose Zone Soil	MPTKDRIEWPYVVLLAGIGVMVAAALHLLSAWVAYVIFGALWVGFAIWSKTHR
Ga0137407_123856592	3300012930	Vadose Zone Soil	VIASARGAGIVPTKGRFEWSYVALLVGLVVMVAAALHLLSAWVACVIFAVLWIGFAIWPK
Ga0164303_100270804	3300012957	Soil	VIVRGRRERKGASIVPTKDFIEWPYVVLLVSIVLMVAGALHLLSSWVAYLVFGVLWIGFAIWSKTHR*
Ga0164303_111191432	3300012957	Soil	VPTKDFIEWPYVALLAAIGLMAAQALHLLSAWVAYVVLGALWIGFAVWSKTHR*
Ga0164299_116186351	3300012958	Soil	KGGASIVPAKDHFEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKNHR*
Ga0134087_102783701	3300012977	Grasslands Soil	VPAKDRIEWPYVVLLVGIVLMVAAATHLLSVWVAYVIFGVLWRFVIW*
Ga0137405_12234231	3300015053	Vadose Zone Soil	IVPTKCHIEWPYVALLIAIVLMIATTAHLLSAWVLYLIFGALWVFVMWSKTRR*
Ga0137409_101786343	3300015245	Vadose Zone Soil	VIASARGASIVPTKDRIDWPYVALLVAIVLMVAAALHLLSAWVAFLIFAVLWVGFAIWSKTHR*
Ga0137403_1000621212	3300015264	Vadose Zone Soil	VPTRDRIEWPQVALGIVLMVAGALHLLSQWVAYVMFGALWVGFAIWSSHR*
Ga0137403_109991781	3300015264	Vadose Zone Soil	GASIVPTKCHIEWPYVALLIAIVLMIATTAHLLSAWVLYLIFGALWVFVMWSKTRR*
Ga0066669_107024363	3300018482	Grasslands Soil	VPAKDRIEWPYVVLLVGIVLMVAAATHLLSVCVAYVIFGVLWIGFAIWSKIQR
Ga0210401_100170542	3300020583	Soil	VPAKDHIEWSYVVLLVGLAVMVASALHLLSAWVAYVIFAVLWIGFAIWPKNHR
Ga0210401_104776072	3300020583	Soil	VPAKDHIEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKSHR
Ga0210401_108225243	3300020583	Soil	TRRGESKGGASIVPTKDHIEWPHVALPVAIVVMVASAFHLLSAWVAYVIFGALWVFVMWSKTHR
Ga0215015_107613641	3300021046	Soil	ETASIVSTKYRIDWPYVVLLVGIVVMVPATLHLLSTWVAYLIFAVLWVFVMWSKLADDFG
Ga0179596_102303941	3300021086	Vadose Zone Soil	TASRKERKLPAGKGGASIVPAKDHIDWPYVVLLVGLVVMVAAALHLLSAWVACVIFAVLWIGFAIWPKSHR
Ga0210404_102005223	3300021088	Soil	VPAKDHIEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIGPKSHR
Ga0210408_108565892	3300021178	Soil	VPTKGRFEWSYVALLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAI
Ga0210396_116132901	3300021180	Soil	GGASIVPAKDHIEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKSPR
Ga0193719_102347802	3300021344	Soil	MPTKDRIEWPYVVLLVGIVAMVAAALHLLSAWVAYVIFGALWVGFAIWSKTHR
Ga0210384_100095706	3300021432	Soil	VPAKDHIEWPYVVLLVGLVVMVAAALHLLSTWVAYVIFAVLWIGFAIWPKSPR
Ga0210384_100927302	3300021432	Soil	VPTKDHIEWPHVALPVAIVVMVASAFHLLSAWVAYVIFGALWVFVMWSKTHR
Ga0210384_115785731	3300021432	Soil	VPAKDRFEWPYVALLVGIVLMVAATLHLLSAWVAFVIFGALWIGFAIWSEIHR
Ga0210402_105607273	3300021478	Soil	VPTKDRIEWPHVVLLVGIVMMIAAAAHLLSAWVAYLIFAVLWVFVMWSETRR
Ga0210409_100852592	3300021559	Soil	VPTKGRFEWSYVALLVGLVVMVAAAFHLLSAWVAYVIFAVLWIGFAIGPKGHR
Ga0210409_103417723	3300021559	Soil	DYIEWPHVVLPVAIVVMVASAFHLLSAWVAYVIFAVLWIGFVIWPKSHR
Ga0207684_105200942	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPAKGRIEWPYVTLMAAIALLVAAALHRLPAWVAFLIFAVLWVGFRIWPKR
Ga0207703_121580781	3300026035	Switchgrass Rhizosphere	TKDPIDWPYVVLLVGLVVIIAAAVHLLSAWAAYVILVFVMWSKARR
Ga0209839_100153023	3300026294	Soil	VPAKDHIEWPYVTLVIAIVLMIAGAAHRLPAWVAFVILGALWLFVMWSKTDR
Ga0257180_10592812	3300026354	Soil	MPAKGRIEWPYVTLMAAIALLVAAALHRLPAWVAFLIFAVLWVGFR
Ga0257169_10277172	3300026469	Soil	MPAKGRIEWPYVTLLVAIVLVVAVALHLLSAWIAFVIFAVLWVGFAIWLKTNR
Ga0257147_10673092	3300026475	Soil	VRTRGGPTKDHIDWPYVVLPVGIVMMVAAAAHLLSTWVAFVIFGALWVFVMWSKTHP
Ga0257164_10791512	3300026497	Soil	VPTKDHIEWPHVVLLVGIVMMVAAAAHLLSAWVAYLIFGALWMFVMWSKTHR
Ga0257181_10853871	3300026499	Soil	IVPTKGRIDWPYVALPVAIVVMVASALHLLSAWVASVIFAVLWVFVMWSKLADDFGK
Ga0257168_10230201	3300026514	Soil	VPTKGRIDWPYVALPVAIVVMVASALHLLSAWVASVIFAVLWVFVIWSKLADDFGK
Ga0209474_104142802	3300026550	Soil	VPAKDRIEWPYVVLLVGIVLMVAAATHLLSVWVAYVIFGVLWIGFAIWSKIQR
Ga0209117_11971002	3300027645	Forest Soil	VKAARRARVQGGASIVPAKDHIEWSYVALLVAIVMMIAGAAHLLSAWVAFVIFGALWVFVMWSKTRR
Ga0209217_10081526	3300027651	Forest Soil	MFAKDHIEWPYVVLLVGIVVMVAAALHLLSAWVALVMFAVLWIGFAIWNKTHR
Ga0209701_107185491	3300027862	Vadose Zone Soil	VPAKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAYVIFAILWVGFAIWSKTRR
Ga0209283_101697391	3300027875	Vadose Zone Soil	SIMPAKGRIEWPYVTLLVAIVLVVAVALHLLSAWIAFVIFAVLWVGFAIWLKTNR
Ga0209590_101125643	3300027882	Vadose Zone Soil	VPTKDRIEWPYVVLLVGIVVMVAATLHLLSAWVAYVIFGALWVGFAIWSKIHR
Ga0209068_107060232	3300027894	Watersheds	VPTKGRFEWSYVALLVGLVVMVAAAFHLMSAWVAYVIFAVLWIGLAIGPKGHR
Ga0209526_100733145	3300028047	Forest Soil	VPTKVHIEWPYVALLVGIVVMVAAAAHLLEAWVAYVIFGVLWVGFAIWSKTHR
Ga0307282_106616291	3300028784	Soil	VGVSAKGASIVPTKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAYVIFGALWVGFAIWSKTHR
Ga0307312_101760733	3300028828	Soil	MPTKDRIEWPYVVLLVGIVVMVAAALHLLSAWVAYVIFGALWVGFAIWSKTHR
Ga0170834_1073576992	3300031057	Forest Soil	VPTKGRIDWPYVALPVAIVVMVASALHLLSAWVASVNFAVSWVFVMWSKLADDFGK
Ga0307469_102269911	3300031720	Hardwood Forest Soil	VPTKDHIDWPYVVLLVGLVVMVAAALHLLSAWVAFVIFGALWVFVMWSKTRR
Ga0307469_103374392	3300031720	Hardwood Forest Soil	VPTKDRIDWPYVTLLVAIVLVVAATLHLLPIWIAFVIFAVLWIGFAISSKTRR
Ga0307469_113776831	3300031720	Hardwood Forest Soil	VPTKDRIEWPYVVLLVGIVMMVAAAAHLLSTWVAFVIFGALWVFVMWSKTHP
Ga0307475_110084621	3300031754	Hardwood Forest Soil	SGKLPAGVTPKGASNVPAKDRIEWPYVVLLVGIVLMVAAALHLLSVWVAYLIFGVLWIGFAIWSEGHR
Ga0307479_100283247	3300031962	Hardwood Forest Soil	VPTKDHIEWPYVVLLVGLVVMVAATLHLLAAWVAYVIFAVLWIGFAIWSKGHR
Ga0307479_102349373	3300031962	Hardwood Forest Soil	VPAKDRIEWPYAALLVGIVLMVAAALHLLSAWVAYLIFGVLWIGFAIWSEGHR
Ga0307471_1004442212	3300032180	Hardwood Forest Soil	VDFRAIRNAGIVATKDYIEWPYVALLVAIVLMVAAAAHLLSAWLAFVSFGALWVGFAIWSKTNR
Ga0307471_1033461592	3300032180	Hardwood Forest Soil	VPTKGRIDWPYVALPVAIVVMVASALHLLSAWVASVIFAVLWVFVMWSKLADDFGK
Ga0370546_001863_1194_1355	3300034681	Soil	MPAKDRTEWPYVVLLIGIVLMVAAALHLLSVSVAYVIFAVLWVGFAIWPKTHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067173

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences