NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F067077

Metagenome / Metatranscriptome Family F067077

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F067077
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 103 residues
Representative Sequence MYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRGLF
Number of Associated Samples 108
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 19.84 %
% of genes near scaffold ends (potentially truncated) 31.75 %
% of genes from short scaffolds (< 2000 bps) 84.13 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (97.619 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere
(7.143 % of family members)
Environment Ontology (ENVO) Unclassified
(43.651 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.206 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.
1INPhiseqgaiiFebDRAFT_1003457932
2JGI1027J11758_115813741
3Ga0062384_1006983482
4Ga0062387_1004409211
5Ga0062595_1021578801
6Ga0062388_1006392781
7Ga0058862_125112612
8Ga0070658_100046893
9Ga0070683_1009142722
10Ga0070683_1020426512
11Ga0070666_111828951
12Ga0070671_1002202643
13Ga0070709_117406332
14Ga0070714_1013689132
15Ga0070681_101178523
16Ga0070679_1001517182
17Ga0070735_103008293
18Ga0070684_1014610481
19Ga0068853_1010068861
20Ga0068853_1020978751
21Ga0070733_104944661
22Ga0070733_108143532
23Ga0070696_1004487353
24Ga0070693_1002250993
25Ga0070665_1001746633
26Ga0068856_1000392363
27Ga0068852_1010085401
28Ga0068864_1000114668
29Ga0074470_101176382
30Ga0068858_1000135803
31Ga0068860_1022276012
32Ga0075028_1000579383
33Ga0075029_1012052171
34Ga0075017_1004392422
35Ga0075015_1000932592
36Ga0075015_1001526953
37Ga0075030_1013814511
38Ga0075018_102429513
39Ga0097621_1014718821
40Ga0068871_1002101653
41Ga0075522_100758251
42Ga0075522_103120852
43Ga0079219_105963442
44Ga0105240_108561631
45Ga0105247_101777302
46Ga0099792_108480972
47Ga0099792_110579302
48Ga0105243_104452672
49Ga0105241_107705422
50Ga0105242_106503972
51Ga0105248_102688823
52Ga0105238_116096052
53Ga0105249_132932631
54Ga0134125_100284406
55Ga0134128_103175843
56Ga0134122_109844301
57Ga0134122_116267231
58Ga0137395_104254312
59Ga0137407_114235301
60Ga0164298_108823391
61Ga0164305_121424212
62Ga0120127_100578122
63Ga0182024_102857212
64Ga0182030_106047771
65Ga0182030_107397752
66Ga0157379_104958031
67Ga0167658_10281502
68Ga0167650_10466181
69Ga0187824_102933852
70Ga0210405_104575872
71Ga0210408_106472732
72Ga0210389_111930332
73Ga0210384_100229773
74Ga0210384_118849661
75Ga0210402_100844894
76Ga0207656_101009721
77Ga0209483_12930731
78Ga0207705_100323202
79Ga0207654_110779051
80Ga0207707_100375315
81Ga0207707_100858933
82Ga0207707_115619372
83Ga0207671_101979703
84Ga0207657_100239455
85Ga0207649_104961792
86Ga0207687_100472493
87Ga0207644_102229063
88Ga0207690_102629003
89Ga0207686_101559592
90Ga0207686_101684062
91Ga0207709_104013712
92Ga0207661_106045502
93Ga0207712_108738412
94Ga0207677_100096913
95Ga0207703_110847812
96Ga0207639_115676741
97Ga0207702_102381683
98Ga0207702_122936732
99Ga0207676_107308013
100Ga0207698_106552682
101Ga0209167_103138861
102Ga0209068_101979811
103Ga0209488_109455151
104Ga0209698_101156864
105Ga0209168_101958141
106Ga0268264_116880962
107Ga0311340_108271493
108Ga0170823_144841852
109Ga0307498_104158491
110Ga0170824_1071108882
111Ga0302324_1005345223
112Ga0302324_1026965082
113Ga0170818_1005537222
114Ga0302326_102679732
115Ga0310686_1025053151
116Ga0310686_1131979832
117Ga0310813_123244111
118Ga0307475_107865022
119Ga0307478_110519001
120Ga0307479_107742591
121Ga0307470_100542202
122Ga0307470_109087692
123Ga0307470_110474732
124Ga0307471_1024959202
125Ga0307471_1043096271
126Ga0335070_107471522
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 59.85%    β-sheet: 0.00%    Coil/Unstructured: 40.15%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100MYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRGLFExtracel.Extracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
97.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Bog Forest Soil
Freshwater Sediment
Sediment (Intertidal)
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Glacier Forefield Soil
Surface Soil
Soil
Agricultural Soil
Arctic Peat Soil
Permafrost
Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Bog
Permafrost
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Agricultural Soil
Palsa
Host-Associated
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
7.1%4.8%4.0%3.2%4.0%4.8%6.3%7.1%3.2%7.1%4.8%3.2%4.8%4.0%3.2%4.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10034579323300000364SoilMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAAMAMTVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAMGLTVLVFLNDVFGDGRALF*
JGI1027J11758_1158137413300000789SoilMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAAMAMTVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAMGLTVLVFLNDVFGD
Ga0062384_10069834823300004082Bog Forest SoilRGRYDSNLPLIYYSAVIAMNVLADRNLSPILLYPGIAFALILRFEFMGKGFAKFIGFLTTIAMGLTVLAYLDEVFGDGRGLF*
Ga0062387_10044092113300004091Bog Forest SoilMYFDATPMNMTILLVVTLAIIAIILLVRGRYDSNLPLIYYSAVIAMNVLADRNLSPILLYPGIAFALILRFEFMGKGFAKFVGFLTTVVMGLTVLAYLDEVFGDGRGLF*
Ga0062595_10215788013300004479SoilMNMTILLVVALAIVAIILLSRGRYDSNLPLLYYSAALTLSVLTDRGLPLMLLYSGIACALVLRFEFMGKGFTKFVGVVNSIAISLTVLAFLNQVFGDGRALF*
Ga0062388_10063927813300004635Bog Forest SoilAIILLVRGRYDSNLPLIYYSAVIAMNVLADRNLSPILLYPGIAFALILRFEFMGKGFAKFVGFLTTVVMGLTVLAYLDEVFGDGRGLF*
Ga0058862_1251126123300004803Host-AssociatedMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRG
Ga0070658_1000468933300005327Corn RhizosphereMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRGLF*
Ga0070683_10091427223300005329Corn RhizosphereMYFDATPMNMTILLVVTLAIIAIVLLSKGRYDSNLPLLYYSAALTLTVLSDRGLPTMMLYTGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF*
Ga0070683_10204265123300005329Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMALTVLVFLD
Ga0070666_1118289513300005335Switchgrass RhizosphereVVTLAIIAIVLLSKGRYDSNLPLLYYSAALTLTVLSDRGLPTMMLYTGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF*
Ga0070671_10022026433300005355Switchgrass RhizosphereMYFDATPMNMTIMLVVALAIIAIFLLSRGRYDSNLPLLYYSAAMALTLMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGVLNSLAIGLTVLVFLNDVFGDGRALF*
Ga0070709_1174063323300005434Corn, Switchgrass And Miscanthus RhizosphereMYFDATPTNMTILLVVTLAIIAIILLMRGRYDSNLPLLYYSAALSINVLADRNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLTVLVFLDQVFGDGRSLF*
Ga0070714_10136891323300005435Agricultural SoilMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRGLF*
Ga0070681_1011785233300005458Corn RhizosphereMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMALTVLVFLDDVFGDGRGLF*
Ga0070679_10015171823300005530Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMALTVLVFLDDVFGDGRGLF*
Ga0070735_1030082933300005534Surface SoilMYFDATPMNMTIMLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALILRFEFMGKGFTKFIGVANSIAMALTVLVFLDDVFGDGRGLF*
Ga0070684_10146104813300005535Corn RhizosphereMNMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF*
Ga0068853_10100688613300005539Corn RhizosphereMNMTILLVVTLAIIAIILLSRGRYDSNVPLLYYSAALALSLLTDRGLPLILLYSGIAFALVLRFEFMGKGFTRFVGVVNSIAMGLTVIAFLDEVFGDGRGLF*
Ga0068853_10209787513300005539Corn RhizosphereMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLN
Ga0070733_1049446613300005541Surface SoilMNMTILLVVSLAVIAIVLLSRGRYDSNLPLLYYSAALALSLLSDRGLSPILLYTGIAFALVLRFEFMGQGFTKFIGIVNSIAMSLTILAFLNQVFGDGQGLF*
Ga0070733_1081435323300005541Surface SoilMNMTILLVVSLAIMAIIMLSRGRYDSNVPLLYYSAALSISVLSDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSIAMGLTVLVFLNQVFGDGQGL
Ga0070696_10044873533300005546Corn, Switchgrass And Miscanthus RhizosphereCMYFDATPMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAMGLTVVAFLDEVFGGGRGLF*
Ga0070693_10022509933300005547Corn, Switchgrass And Miscanthus RhizosphereTPMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAMGLTVVAFLDEVFGGGRGLF*
Ga0070665_10017466333300005548Switchgrass RhizosphereMNMTILLVVTLAIIAIVLLSKGRYDSNLPLLYYSAALTLTVLSDRGLPTMMLYTGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF*
Ga0068856_10003923633300005614Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF*
Ga0068852_10100854013300005616Corn RhizosphereAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF*
Ga0068864_10001146683300005618Switchgrass RhizosphereMNMTIMLVVALAIIAIFLLSRGRYDSNLPLLYYSAAMALTLMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGVLNSLAIGLTVLVFLNDVFGDGRALF*
Ga0074470_1011763823300005836Sediment (Intertidal)MNMTIILVVALALIAITLLMRGRYNSNLPLLYYSVAMAVNALSDRSLPPYVLYGGIAFALILRFEFMGTGFTKFIGFMTSFAIGLSAIEYLNGVFGDGRGIF*
Ga0068858_10001358033300005842Switchgrass RhizosphereMYFDATPMNMTILLVVALAIVAIILLSRGRYDSNLPLLYYSAALTLSVLTDRGLPLMLLYSGIACALVLRFEFMGKGFTKFVGVVNSIAISLTVLAFLNQVFGDGRALF*
Ga0068860_10222760123300005843Switchgrass RhizosphereMNMTILLVVALAIIAIFLLIRGRYDSNIPLLYYSAALALSVMTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAMGLTVLVFLNDVFGDGRTLF*
Ga0075028_10005793833300006050WatershedsMYFDATPTNMTILLVVTLAIIAIILLSRGRYDSNFPLLYYSAALSVNVLAERNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLTVLAFLDQVFGDGRGLF*
Ga0075029_10120521713300006052WatershedsMYFDATPMNMTILLVVSLAIIAIVLLSRGRYDSNLPLLYYSAALAMSVMTDRGVSPILLYTGIAFALVLRFEFMGKGFTKFIGVMNSIAMSLTVLW
Ga0075017_10043924223300006059WatershedsMTILLVVALAIIAIVLLSRGRYDSNLPLLYYGAALTLSVATDRGLSPILLYSGIAFALILRFEFMGKGFTKFIGFANSIAIGLTI
Ga0075015_10009325923300006102WatershedsMYFDATPMNMTILLVVALAVIAIVLLSRGRYDSNLPLLYYSAALALSLLSDRGLSPILLYTGIAFALVLRFEFMGQGFTKFIGVVNSIAISLTILAFLNQVFNDGQGLF*
Ga0075015_10015269533300006102WatershedsMTILLVVALAIIAIVLLSRGRYDSNLPLLYYGAALTLSVATDRGLSPILLYSGIAFALILRFEFMGKGFTKFIGFANSIAIGLTILAFLDQVFSDGRGLF*
Ga0075030_10138145113300006162WatershedsMYFDATPMNMTILLVVSLAIIAIVLLSRGRYDSNLPLLYYSAALALSVLTDRGLSPILLYSGIAFALILRFEFMGKGFTKFIGFANSIAISITILALLDEVFGNGRGLF*
Ga0075018_1024295133300006172WatershedsMYFDPTPTNMTILLVVTLAIIAIILLSRGRYDSNFPLLYYSAALSVNVLAERNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLTVLAFLDQVFGDGRSLF*
Ga0097621_10147188213300006237Miscanthus RhizosphereMYFDATPMNMTILLVVALAIIAIFLLIRGRYDSNIPLLYYSAALALSVMTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAMGLTVLVFLNDVFGDGRTLF*
Ga0068871_10021016533300006358Miscanthus RhizosphereMNMTILLVVSLALIAIILLSRGRYDSNVPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMGLTVLVFLNDVFGDGRPLF*
Ga0075522_1007582513300006638Arctic Peat SoilIIAIVLLSRGRYDSNIPLLYYTAALALSTLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIVNSIAMGLTILAFLDQVFGDGRGLF*
Ga0075522_1031208523300006638Arctic Peat SoilMYFDATPTNITILLVVALAVIAIVLLSRGRYDSNLPLLYYSAALTLTALTDRGLSPILLYTGIAFALILRFEFMGKGFTKFIGVANSIAMGITIFAFLNQVFGDGRGLF*
Ga0079219_1059634423300006954Agricultural SoilMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF*
Ga0105240_1085616313300009093Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMALTVLVFLDDVFGDG
Ga0105247_1017773023300009101Switchgrass RhizosphereMYFDATPMNMTILLVVSLAIIAIILLMRGRYDSNLPLLYYSAALTLSVLTDRGLPLMLLYSGIACALVLRFEFMGKGFTKFVGVVNSIAISLTVLAFLNQVFGDGRALF*
Ga0099792_1084809723300009143Vadose Zone SoilMYFDATPMNMTILLVVALAIIAIILLSRGRYDSNLPLLYYIAAMAMSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAISLTVLVFLNEVFGDGRALF*
Ga0099792_1105793023300009143Vadose Zone SoilMYFDATPMNMTILLVVTLAIIAIILLIRGRYDSNFPLLYYSAALSINVLADRNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLTVLVFLDQVFGDGRSLF*
Ga0105243_1044526723300009148Miscanthus RhizosphereMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAMGLTVVAFLDEVFGGGRGLF*
Ga0105241_1077054223300009174Corn RhizosphereMYFDATPMNMTILLVVSLALIAIILLSRGRYDSNVPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMGLTVLVFLNDVFGDGRPLF*
Ga0105242_1065039723300009176Miscanthus RhizosphereMYFDATPMNMTILLVVALAIIAIFLLSRGRYDSKLPLLYYSAAMALTLMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAIGLTVLVFLNDVFGDGRALF*
Ga0105248_1026888233300009177Switchgrass RhizosphereMYFDATPMNMTILLVVALAIIAIILLSRGRYDSNLPLLYYTAALAVSVLSDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSIAISLTILAFLNQVFGDGRALF*
Ga0105238_1160960523300009551Corn RhizosphereLLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMALTVLVFLDDVFGDGRGLF*
Ga0105249_1329326313300009553Switchgrass RhizosphereMYFDATPMNMTILLVVSLALIAIILLSRGRYDSNVPLLYYSAALALSVMTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMGLTVLVFLNDVFGDGRPLF*
Ga0134125_1002844063300010371Terrestrial SoilMYFDATPMNMTILLVVTLAIIAIILLSRGRYDSNVPLLYYSAALALSLLTDRGLPLILLYSGIAFALVLRFEFMGKGFTRFVGVVNSIAMGLTVIAFLDEVFGDGRGLF*
Ga0134128_1031758433300010373Terrestrial SoilMYFDATPMIMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRGLF*
Ga0134122_1098443013300010400Terrestrial SoilILLVVTLAIIAIILLSRGRYDSNLPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAMGLTVVAFLDEVFGGGRGLF*
Ga0134122_1162672313300010400Terrestrial SoilMYFDATPMNMTILLVVTLAIIAIVLLSKGRYDSNLPLLYYSAALTLTVLSDRGLPTMMLYTGIAFALVLRLEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF*
Ga0137395_1042543123300012917Vadose Zone SoilMYFDATPTNMTILLVVTLAIIAIILLIRGRYDSNLPLLYYSAALSINVLADRNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLTVLVFLDQVFGDGRTLF*
Ga0137407_1142353013300012930Vadose Zone SoilMYFDATPMNMTIMLVVALAIIAIFLLSRGRYDSNLPLLYYSAAMALTLMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAIGLTVLVLLNDVFGDGRSLF*
Ga0164298_1088233913300012955SoilMYFDATPTNMTILLVVTLAIIAIILLIRGRYDSNFPLLYYSAALSINVLAERNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLTVLVFLDQVFGDGRGLF*
Ga0164305_1214242123300012989SoilMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAMGLTVVAFLDE
Ga0120127_1005781223300013503PermafrostMYFDATPMNMTILLVVALAIIAIVLISRGRYDSNLPLLYYSAALALSSSTDRGLPPILLYSGIALALILRFEFMGKGFTKFIGIATSLAMGLTILAFLDEVFGDGRGLF*
Ga0182024_1028572123300014501PermafrostMYFDATPTNITILLVVALAVIAIVLLSRGRYDSNLPLLYYSAALALTALTDRGLSPMLLYTGIAFALILRFEFMGKGFTKFIGVANSIAMGLTIFAFLNQVFGDGRGLF*
Ga0182030_1060477713300014838BogSREWNCMYFDPTPTNMTILLVVALAIIAIVMVSRGRYTSNLPLLYYSAALTLSTTTDQGLPPILLYSGIALALILRFEFMGKGFTKFIGFVTSFAMGLTVLAFLNQVFSDGRSLF*
Ga0182030_1073977523300014838BogMYFDATPTNMTILLVVSLAIIAIVLLSRGRYDSNIPLLYYSAALTLSLLTDRGLSPMLLYTGIAFALILRFEFMGKGFTKFIGFANSIAMGLTVLVFL
Ga0157379_1049580313300014968Switchgrass RhizosphereLLVVALAIIAIILLSRGRYDSNLPLLYYTAALAVSVLSDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSIAISLTILAFLNQVFGDGRALF*
Ga0167658_102815023300015195Glacier Forefield SoilMYFDATPMNMTILLVVTLAIIAIILLMRGRYDSNLPLMYYSAALAVDVLSDRNLSPYLLYSGIAFALILRFEFMGKGFTKFIGFMTSIAMGLTVVVFLSGVFGDGRTLF*
Ga0167650_104661813300015203Glacier Forefield SoilMYFDATPTNMTILLVVALAIIAIMMLSRGRYDSNLPLLYYTAALSLTVLTDRGLPLILLYSGIAFALILRFEFMGKGFTKFIGVMNSIAISLTVLAFLEQVFGDGRGLF*
Ga0187824_1029338523300017927Freshwater SedimentMNMTILLVVSLAIIAIVLLSRGRYDSNVPLLYYTAALTVSVLSDRGLSPILLYSGIAFALVLRFEFMGKGFTRFIGVVNSIAMGLTVFAFLEQVFGDGHSLF
Ga0210405_1045758723300021171SoilMNMTILLVVSLAIIAIVLLSRGRYDSNLPLLYYSAALGLTVLTDRGVSPILLYTGIAFALVLRFEFMGKGFTKFIGVMNSIAMGLTVLWFLDEVFGDGRALF
Ga0210408_1064727323300021178SoilMNMTILLVVSLAIIAIVLLSRGRYDSNLPLLYYSAALAVSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMGLTALVFLNEVFGDGRDLF
Ga0210389_1119303323300021404SoilMYFDPNPTNITILLVISLAVIAIVLLSKGRYDSNLPLLYYTAALTLTVLTDRGLSPILLYTGIAFALILRFEFMGKGFTKFIGVANSIAMGITIFALLNQVFGDGRWLF
Ga0210384_1002297733300021432SoilMNMTILLVVALAVIAIVLLSRGRYDSNLPLLYYTAALALSTLTDRGLPVILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAISLTVLVFLDQVFGDGRGLF
Ga0210384_1188496613300021432SoilDATPTNMTILLVVTLAIIAIILLMRGRYDSNLPLLYYSAALSINVLADRNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLTVLVFLDQVFGDGRSLF
Ga0210402_1008448943300021478SoilMYFDATPMNMTILLVVALAVIAIVLLSRGRYDSNLPLLYYSAALAVSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMGLTALVFLNEVFGDGRALF
Ga0207656_1010097213300025321Corn RhizosphereMNMTILLVVTLAIIAIVLLSKGRYDSNLPLLYYSAALTLTVLSDRGLPTMMLYTGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF
Ga0209483_129307313300025862Arctic Peat SoilMYFDATPTNITILLVVALAVIAIVLLSRGRYDSNLPLLYYSAALTLTALTDRGLSPILLYTGIAFALILRFEFMGKGFTKFIGVANSIAMGITIFAFLNQVFGDGRGLF
Ga0207705_1003232023300025909Corn RhizosphereMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRGLF
Ga0207654_1107790513300025911Corn RhizosphereMNMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF
Ga0207707_1003753153300025912Corn RhizosphereMYFDATPMNMTILLVVTLAIIAIILLSRGRYDSNVPLLYYSAALALSLLTDRGLPLILLYSGIAFALVLRFEFMGKGFTRFVGVVNSIAMGLTVIAFLDEVFGDGRGLF
Ga0207707_1008589333300025912Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMALTVLVFLDDVFGDGRGLF
Ga0207707_1156193723300025912Corn RhizosphereNMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF
Ga0207671_1019797033300025914Corn RhizosphereMYFDATPMNMTILLVVTLAIIAIVLLSKGRYDSNLPLLYYSAALALSLLTDRGLPLILLYSGIAFALVLRFEFMGKGFTRFVGVVNSIAMGLTVIAFLDEVFGDGRGLF
Ga0207657_1002394553300025919Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFLDQVFGDGRGLF
Ga0207649_1049617923300025920Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAMGLTVLAFL
Ga0207687_1004724933300025927Miscanthus RhizosphereMYFDATPMNMTILLVVALAIVAIILLSRGRYDSNLPLLYYSAALTLSVLTDRGLPLMLLYSGIACALVLRFEFMGKGFTKFVGVVNSIAISLTVLAFLNQVFGDGRALF
Ga0207644_1022290633300025931Switchgrass RhizosphereMYFDATPMNMTIMLVVALAIIAIFLLSRGRYDSNLPLLYYSAAMALTLMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGVLNSLAIGLTVLVFLNDVFGDGRALF
Ga0207690_1026290033300025932Corn RhizosphereMNMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGIMTSLAMGLTVVVFLGQVFGDGRDLF
Ga0207686_1015595923300025934Miscanthus RhizosphereMNMTILLVVALAIIAIILLSRGRYDSNLPLLYYTAALAVSVLSDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF
Ga0207686_1016840623300025934Miscanthus RhizosphereMNMTILLVVALAIIAIFLLIRGRYDSNIPLLYYSAALALSVMTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAMGLTVLVFLNDVFGDGRTLF
Ga0207709_1040137123300025935Miscanthus RhizosphereMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAALALSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSLAMGLTVVAFLDEVFGGGRGLF
Ga0207661_1060455023300025944Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF
Ga0207712_1087384123300025961Switchgrass RhizosphereMNMTILLVVTLAIIAIVLLSKGRYDSNLPLLYYSAALTLTVLSDRGLPTMMLYTGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRVVFRPAATTNRGCPGRRIADD
Ga0207677_1000969133300026023Miscanthus RhizosphereMYFDATPMNMTILLVVTLAIIAIVLLSKGRYDSNLPLLYYSAALTLTVLSDRGLPTMMLYTGIAFALVLRFEFMGKGFTKFIGVVNSLAMGVTVVAFLNEVFGDGRGLF
Ga0207703_1108478123300026035Switchgrass RhizosphereVVALAIIASMLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF
Ga0207639_1156767413300026041Corn RhizosphereMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVVNSIAM
Ga0207702_1023816833300026078Corn RhizosphereMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF
Ga0207702_1229367323300026078Corn RhizosphereDWNRMYFDATPINMTIILVVALAVIAIVLLLRGRYNSNLPLLYYSAALALNAAADRGLSPYLLYTGIALALILRFEFMGKGFTKFIGFMTSLAIGLTVVVFLDQVFGDGRALF
Ga0207676_1073080133300026095Switchgrass RhizosphereLFLLSRGRYDSNLPLLYYSAAMALTLMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGVLNSLAIGLTVLVFLNDVFGDGRALF
Ga0207698_1065526823300026142Corn RhizosphereMYFDATPMNMTILLVVSLAIIAIILLMRGRYDSNLPLLYYSAALAVNGFGDGGLPPIVIYLGIAFALILRFEFMGKGFTKFIGVMTSLAMGLTVIMFLNQVFGDGRALF
Ga0209167_1031388613300027867Surface SoilMYFDATPMNMTILLVVSLAVIAIVLLSRGRYDSNLPLLYYSAALALSLLSDRGLSPILLYTGIAFALVLRFEFMGQGFTKFIGIVNSIAMSLTILAFLNQVFGDGQGLF
Ga0209068_1019798113300027894WatershedsMYFDATPTNMTILLVVTLAIIAIILLSRGRYDSNFPLLYYSAALSVNVLAERNLSPYLLYSGVAFALILRFEFMGKGFTKFIGVLTSLAMGLT
Ga0209488_1094551513300027903Vadose Zone SoilMNMTILLVVALAIIAIILLSRGRYDSNLPLLYYSAAMAMSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAISLTVLVFLNE
Ga0209698_1011568643300027911WatershedsMTILLVVALAIIAIVLLSRGRYDSNLPLLYYGAALTLSVATDRGLSPILLYSGIAFALILRFEFMGKGFTKFIGFANSIAIGLTILAFLDQVFSDGRGLF
Ga0209168_1019581413300027986Surface SoilMYFDATPMNMTIMLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSMLTDRGLPLILLYSGIAFALILRFEFMGKGFTKFIGVANSIAMALTVLVFLDDVFGDGRGLF
Ga0268264_1168809623300028381Switchgrass RhizosphereMNMTILLVVALAIIAIFLLIRGRYDSNIPLLYYSAALALSVMTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAMGLTVLVFLNDVFGDGRPLF
Ga0311340_1082714933300029943PalsaVRGRYDSNLPLIYYSAVIAMNVLADRNLSPILLYPGIAFALILRFEFMGKGFAKFIGFLTTIAMGLTVLAYLDEVFGDGRGLF
Ga0170823_1448418523300031128Forest SoilAIIAIVWLSRGRYDSNLPLLYYSAALSLSVMTDRGLPLILLYTGIAFALILRFEFMGKGFTKFIGIANSIAIGLTIVVFLNEVFGDGRALF
Ga0307498_1041584913300031170SoilVVALAIIAIVLVSRGRYDSNFPLLYYTAALTMSTLSDRALPPILLYSGIAFALVLRFEFMGKGFTKFIGFATSCVMGLTVLAFLNQVFGDGRGLF
Ga0170824_10711088823300031231Forest SoilMNMTILLVVALAIIAIVLLSRGRYDSNLPLLYYSAALSVTVLSDRGLPSIMLYTGIAFALVLRFEFMGKGFTKFIGVVNSLAMGITVLAFLNDVFGDGRGLF
Ga0302324_10053452233300031236PalsaMYFDATPMNMTILLVVTLAIIAIILLVRGRYDSNLPLIYYSAVIAMNVLADRNLSPILLYPGIAFALILRFEFMGKGFAKFIGFLTTIAMGLTVLAYLDEVFGDGRGLF
Ga0302324_10269650823300031236PalsaMYFDPTPTNMTILLVVALAIIAIVMVSRGRYTSNLPLLYYSAALTLSTTTDQGLPPILLYSGIALALILRFEFMGKGFTKFIGFVTSFAMGLTVLAFLNQVFSDGRSL
Ga0170818_10055372223300031474Forest SoilMNMTILLVVALAIIAIILLSRGRYDSNLPLLYYTAALALSVMTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNAIAISLTILAFLNQVFGDGRALF
Ga0302326_1026797323300031525PalsaMYFDPTPTNMTILLVVALAIIAIVMVSRGRYTSNLPLLYYSAALTLSTTTDQGLPPILLYSGIALALILRFEFMGKGFTKFIGFVTSFAMGLTVLAFLNQVFSDGRSLF
Ga0310686_10250531513300031708SoilMYFDASPINITILLVVALAVIAIILLSKGRYDSNLPLLYYSAALTLTVLTDRGLSPILLYTGIAFALILRFEFMGKGFTKFIGVANSIAMGFTIFALLNQVFGDGRWLF
Ga0310686_11319798323300031708SoilMYFDATPTNITILLVVALAVIAIVLLSRGRYDSNLPLLYYSAALALTALTDRGLSPILLYTGIAFALILRFEFMGKGFTKFIGVANSIAMGLTIFAFLNQVFGDGRGLF
Ga0310813_1232441113300031716SoilMYFDATPMNMTILLVVALAIVAIILLSRGRYDSNLPLLYYSAALTLSVLTDRGLPLMLLYSGIACALVLRFEFMGKGFTKFVGVVNSIAISLTVLAFLNQ
Ga0307475_1078650223300031754Hardwood Forest SoilMNMTILLVVTLAIIAIILLSRGRYDSNLPLLYYSAAMAMTVLTDRGVPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAISLTVLVFLNEVFGDGRALF
Ga0307478_1105190013300031823Hardwood Forest SoilMNMTILLVVSLAIIAIVLLSRGRYDSNVPLLYYSAALSLSVLSDRGLPLILLYSGIAFALVLRFEFMGKGFTKFVGVVNSIAISLTVLVFL
Ga0307479_1077425913300031962Hardwood Forest SoilMNMTILLVVALAIIAIILLSRGRYDSNLPLLYYSAAMAMSVLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIANSIAISLTVLVFLNEVFGDGRALF
Ga0307470_1005422023300032174Hardwood Forest SoilMNMTIMLVVALAIIAIFLLIRGRYDSNLPLLYYSAALALTVMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGAVNSLAIGLTVLVFLNDVFGDGRALF
Ga0307470_1090876923300032174Hardwood Forest SoilMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSTLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIVNSIAMGLTVIAFLDEVFGDGRGLF
Ga0307470_1104747323300032174Hardwood Forest SoilMNMTILLVVALAIIAIFLLIRGRYDSNVPLLYYSAALALSVMTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGVANSIAMGLTVLVFLNDVFGDGRALF
Ga0307471_10249592023300032180Hardwood Forest SoilAIIAIFLLIRGRYDSNLPLLYYSAALALTVMSDRGLPLMLLYSGIAFALVLRFEFMGKGFTKFVGAVNSLAIGLTVLVFLNDVFGDGRAQF
Ga0307471_10430962713300032180Hardwood Forest SoilMYFDATPMNMTILLVVALAIIAIVLLSRGRYDSNVPLLYYSAALALSTLTDRGLPLILLYSGIAFALVLRFEFMGKGFTKFIGIVNSIAMGLTVIAFLDEVFGDGRGLF
Ga0335070_1074715223300032829SoilMNMTILLVVSLAVIAIVLLSRGRYDSNLPLLYYSAALALSVLTDRGLSPMLLYSGIAFALVLRFEFMGKGFTRFIGVANSIAMALTIFAFLQQVFGDGRGFF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.