NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F067076

Metagenome Family F067076

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F067076
Family Type Metagenome
Number of Sequences 126
Average Sequence Length 49 residues
Representative Sequence MEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDADRTVNR
Number of Associated Samples 104
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 42.86 %
% of genes near scaffold ends (potentially truncated) 67.46 %
% of genes from short scaffolds (< 2000 bps) 86.51 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.048 % of family members)
Environment Ontology (ENVO) Unclassified
(29.365 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.413 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 21.05%    β-sheet: 0.00%    Coil/Unstructured: 78.95%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.21
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 126 Family Scaffolds
PF03647Tmemb_14 36.51
PF04455Saccharop_dh_N 34.92
PF07335Glyco_hydro_75 2.38
PF13578Methyltransf_24 1.59
PF11450DUF3008 0.79
PF10415FumaraseC_C 0.79
PF12867DinB_2 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 126 Family Scaffolds
COG5548Uncharacterized membrane protein, UPF0136 familyFunction unknown [S] 36.51
COG1915Uncharacterized conserved protein AF1278, contains saccharopine dehydrogenase N-terminal (SDHN) domainFunction unknown [S] 34.92

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459018|G1P06HT02GP8XUAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium597Open in IMG/M
2189573005|GZGK9D402IEN4SAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia502Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10001112All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus6682Open in IMG/M
3300000955|JGI1027J12803_104279708All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia810Open in IMG/M
3300000956|JGI10216J12902_116138437All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium654Open in IMG/M
3300002568|C688J35102_119995305All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia839Open in IMG/M
3300003203|JGI25406J46586_10049407All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1419Open in IMG/M
3300004081|Ga0063454_101702391All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium548Open in IMG/M
3300004156|Ga0062589_100427592All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1087Open in IMG/M
3300004156|Ga0062589_101554557All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium653Open in IMG/M
3300004480|Ga0062592_102081510All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium563Open in IMG/M
3300004643|Ga0062591_101799655All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium625Open in IMG/M
3300005093|Ga0062594_101961499All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium624Open in IMG/M
3300005162|Ga0066814_10006295All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1311Open in IMG/M
3300005166|Ga0066674_10147274All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1110Open in IMG/M
3300005167|Ga0066672_10874411All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium559Open in IMG/M
3300005178|Ga0066688_10142684All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1495Open in IMG/M
3300005181|Ga0066678_10470802All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia835Open in IMG/M
3300005186|Ga0066676_10487636All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium836Open in IMG/M
3300005186|Ga0066676_10663480All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium709Open in IMG/M
3300005289|Ga0065704_10153316All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1411Open in IMG/M
3300005289|Ga0065704_10305101All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium878Open in IMG/M
3300005294|Ga0065705_10029320All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2045Open in IMG/M
3300005332|Ga0066388_100167759All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2792Open in IMG/M
3300005332|Ga0066388_100294304All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2268Open in IMG/M
3300005332|Ga0066388_101666475All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1126Open in IMG/M
3300005332|Ga0066388_108545035All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium510Open in IMG/M
3300005364|Ga0070673_100637702All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia974Open in IMG/M
3300005365|Ga0070688_100892664All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium700Open in IMG/M
3300005451|Ga0066681_10254389All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1066Open in IMG/M
3300005451|Ga0066681_10367093All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia885Open in IMG/M
3300005471|Ga0070698_100484414All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1174Open in IMG/M
3300005553|Ga0066695_10373601All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium890Open in IMG/M
3300005553|Ga0066695_10398948All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia854Open in IMG/M
3300005554|Ga0066661_10690327All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium600Open in IMG/M
3300005558|Ga0066698_10152090All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1564Open in IMG/M
3300005560|Ga0066670_10053998All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2096Open in IMG/M
3300005569|Ga0066705_10610763All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium668Open in IMG/M
3300005574|Ga0066694_10063779All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae1690Open in IMG/M
3300005577|Ga0068857_100928125All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia836Open in IMG/M
3300005598|Ga0066706_10220745All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1464Open in IMG/M
3300005764|Ga0066903_100418346All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2217Open in IMG/M
3300005764|Ga0066903_106553447All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium606Open in IMG/M
3300005764|Ga0066903_107990774All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium543Open in IMG/M
3300005841|Ga0068863_100396282All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1350Open in IMG/M
3300005937|Ga0081455_10561939All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium752Open in IMG/M
3300005937|Ga0081455_10807510All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium588Open in IMG/M
3300006028|Ga0070717_11677902All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium575Open in IMG/M
3300006034|Ga0066656_10486634All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia805Open in IMG/M
3300006172|Ga0075018_10246429All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium864Open in IMG/M
3300006175|Ga0070712_100921342All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium754Open in IMG/M
3300006358|Ga0068871_100320995All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1364Open in IMG/M
3300006358|Ga0068871_101166829All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium722Open in IMG/M
3300006755|Ga0079222_10832461All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia760Open in IMG/M
3300006854|Ga0075425_101179513All Organisms → cellular organisms → Bacteria870Open in IMG/M
3300006903|Ga0075426_10415927All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia993Open in IMG/M
3300006904|Ga0075424_100367251All Organisms → cellular organisms → Bacteria1534Open in IMG/M
3300006904|Ga0075424_101389777All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium746Open in IMG/M
3300007076|Ga0075435_101688388All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium556Open in IMG/M
3300009012|Ga0066710_103804424All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium566Open in IMG/M
3300009137|Ga0066709_102478752All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium701Open in IMG/M
3300010047|Ga0126382_10705527All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia847Open in IMG/M
3300010047|Ga0126382_12025061All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium549Open in IMG/M
3300010329|Ga0134111_10550672All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium512Open in IMG/M
3300010359|Ga0126376_10808300All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia916Open in IMG/M
3300010360|Ga0126372_10538730All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1106Open in IMG/M
3300010360|Ga0126372_12220581All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium598Open in IMG/M
3300010373|Ga0134128_11705054All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia693Open in IMG/M
3300011003|Ga0138514_100019771All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1197Open in IMG/M
3300012189|Ga0137388_11916955All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium522Open in IMG/M
3300012199|Ga0137383_10381721All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter1032Open in IMG/M
3300012208|Ga0137376_11569425All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium549Open in IMG/M
3300012211|Ga0137377_11699842All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium553Open in IMG/M
3300012351|Ga0137386_10638095All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium766Open in IMG/M
3300012359|Ga0137385_10134124All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus2183Open in IMG/M
3300012683|Ga0137398_10427370All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium904Open in IMG/M
3300012915|Ga0157302_10081508All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter983Open in IMG/M
3300012948|Ga0126375_11329615All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium605Open in IMG/M
3300012955|Ga0164298_10257346All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1057Open in IMG/M
3300012955|Ga0164298_11648362All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium507Open in IMG/M
3300012957|Ga0164303_10251250All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1014Open in IMG/M
3300013306|Ga0163162_12885930All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium553Open in IMG/M
3300014325|Ga0163163_12833360All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium541Open in IMG/M
3300015053|Ga0137405_1060077All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus4386Open in IMG/M
3300015053|Ga0137405_1088000All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus3651Open in IMG/M
3300015053|Ga0137405_1264030All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae3859Open in IMG/M
3300015261|Ga0182006_1014264All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus3428Open in IMG/M
3300015373|Ga0132257_102318427All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium696Open in IMG/M
3300015373|Ga0132257_102972563All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus618Open in IMG/M
3300016371|Ga0182034_10148154All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1759Open in IMG/M
3300018027|Ga0184605_10414780All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus599Open in IMG/M
3300018051|Ga0184620_10108202All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus865Open in IMG/M
3300018061|Ga0184619_10004246All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus5311Open in IMG/M
3300018075|Ga0184632_10225068All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium823Open in IMG/M
3300018075|Ga0184632_10371107All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus607Open in IMG/M
3300018466|Ga0190268_11396473All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium599Open in IMG/M
3300019869|Ga0193705_1018249All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1529Open in IMG/M
3300019875|Ga0193701_1031960All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1080Open in IMG/M
3300019883|Ga0193725_1134357All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium549Open in IMG/M
3300019885|Ga0193747_1001135All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus7491Open in IMG/M
3300019886|Ga0193727_1051720All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1324Open in IMG/M
3300019890|Ga0193728_1058782All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1853Open in IMG/M
3300019997|Ga0193711_1006344All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1484Open in IMG/M
3300019998|Ga0193710_1011661All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus894Open in IMG/M
3300020006|Ga0193735_1014767All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus2448Open in IMG/M
3300020012|Ga0193732_1070703All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium576Open in IMG/M
3300020062|Ga0193724_1052254All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus863Open in IMG/M
3300020062|Ga0193724_1064211All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus770Open in IMG/M
3300021415|Ga0193694_1054243All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium548Open in IMG/M
3300021560|Ga0126371_10254202All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1872Open in IMG/M
3300022756|Ga0222622_10002198All Organisms → cellular organisms → Bacteria → Proteobacteria8217Open in IMG/M
3300022756|Ga0222622_11380775All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium518Open in IMG/M
3300025271|Ga0207666_1003723All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1884Open in IMG/M
3300025932|Ga0207690_10187819All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1561Open in IMG/M
3300025961|Ga0207712_10082408All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2345Open in IMG/M
3300026324|Ga0209470_1276188All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium648Open in IMG/M
3300026343|Ga0209159_1273626All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium514Open in IMG/M
3300027562|Ga0209735_1081192All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium704Open in IMG/M
3300028708|Ga0307295_10015233All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1847Open in IMG/M
3300028807|Ga0307305_10061398All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae1732Open in IMG/M
3300028814|Ga0307302_10504908All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium600Open in IMG/M
3300028824|Ga0307310_10749148All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium503Open in IMG/M
3300031231|Ga0170824_113823729All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia762Open in IMG/M
3300031720|Ga0307469_12337595All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium521Open in IMG/M
3300032421|Ga0310812_10009146All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3254Open in IMG/M
3300033412|Ga0310810_11039538All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium693Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.05%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil16.67%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.56%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil5.56%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.97%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.38%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere2.38%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.59%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.59%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.59%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.59%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere1.59%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.59%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.79%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.79%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.79%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.79%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.79%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.79%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.79%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.79%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.79%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.79%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.79%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.79%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459018Litter degradation MG2EngineeredOpen in IMG/M
2189573005Grass soil microbial communities from Rothamsted Park, UK - FG3 (Nitrogen)EnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003203Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300011003Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015261Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300019886Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300019997Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2EnvironmentalOpen in IMG/M
3300019998Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1EnvironmentalOpen in IMG/M
3300020006Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2EnvironmentalOpen in IMG/M
3300020012Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1EnvironmentalOpen in IMG/M
3300020062Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1EnvironmentalOpen in IMG/M
3300021415Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025271Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
2MG_014472202170459018Switchgrass, Maize And Mischanthus LitterMLTQTLYNEEDDMEKPNARGPTPSRKAVHALGARLNRKPKQPPPLPVKKNVSKPDSADR
FG3_102961702189573005Grass SoilASTRSKINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKSSNADRTVNP
AF_2010_repII_A1DRAFT_10001112103300000597Forest SoilMEKPNARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKVSAADHTIGR*
JGI1027J12803_10427970823300000955SoilMEKPNARGPSPGRKATHALGARLNRKTKQPPPLPLKKKTS
JGI10216J12902_11613843733300000956SoilGPSPGRKAVHALGAKLNRKPKRPPPLPLKKKISDAGGTVNR*
C688J35102_11999530513300002568SoilPSPGRKAVHTLGARMNRKPKRPPPLPLKKKLSDADRTVNR*
JGI25406J46586_1004940723300003203Tabebuia Heterophylla RhizosphereMEKPASRGPSPGRKAVHALGARLNRKPKRPPPLPSKNKGTDARRKTAIDR*
Ga0063454_10170239113300004081SoilARGPSPGRKAVNALGARLNRKPKRPPPLPSKKKVSDADRTANR*
Ga0062589_10042759213300004156SoilNARGPTPSRKAVHALGARLNRKPKQPPPLPVKKNVSKPDSADR*
Ga0062589_10155455733300004156SoilDPNASAPSKINMEKPTSHGPSLGRKATHALGSRLNRKPKQPPPLPLKKKPSNAGRTLSR*
Ga0062592_10208151023300004480SoilASTTSKTNMEKPNARGPSPGRKAAHALGGRLNRKPKRPPPLPSKKKVSDANRTANR*
Ga0062591_10179965513300004643SoilINMEKPSARGPSPGRKASHALGARLNRKPKRPPLLPLKKKASDTERTVNR*
Ga0062594_10196149913300005093SoilMEKPSARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKVSAADHTIVR*
Ga0066814_1000629513300005162SoilMEKPTSRGPSPGRKAVHALGARLNRKPKRPPPLPSKKKVSDSNRTPNR*
Ga0066674_1014727423300005166SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKISDADRPANR*
Ga0066672_1087441113300005167SoilSKINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKISDADRPANR*
Ga0066688_1014268443300005178SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDADRPVNR*
Ga0066678_1047080213300005181SoilSKINMEKPTARGPSPGRKAVHALGARLNRKPKLPPPLPLKKKISDADRTVNR*
Ga0066676_1048763633300005186SoilMEKPTARGPSPGRKAVHALGARLNRKPKQPPPLPLKKKISNADRTANR*
Ga0066676_1066348023300005186SoilMNATSKINMEKPTAHGPSPGRKAVHPLGARLNRKPKRATAASEKKISDADRTVNR*
Ga0065704_1015331613300005289Switchgrass RhizosphereMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKVSDADRAVN
Ga0065704_1030510123300005289Switchgrass RhizosphereMEKPTARGPSPGRKAVHALGARLNRKSKQPPPLPLKKKISDADRTVNR*
Ga0065705_1002932033300005294Switchgrass RhizosphereMEKPTARGPSXGRKAVHALGARLNRKSKQPPPLPLKKKISDADRTVNR*
Ga0066388_10016775943300005332Tropical Forest SoilMEKPTARGPSPGRKAIHALGARLNRKPKRPPPLPLKKKISDTDRTVNR*
Ga0066388_10029430423300005332Tropical Forest SoilMEKPTARGPSPGRKAAHALGARLNRKPKRPPPPPLKKKSSDADRTVNR*
Ga0066388_10166647533300005332Tropical Forest SoilMEKPSTRGPSPGRKAIHVLGAKLNRKPKQPPPLPPKKNISKADRC*
Ga0066388_10854503513300005332Tropical Forest SoilARGPSPGRKAVHALGAKLNRKPKRPPPLPLKKKISDAGRTVSR*
Ga0070673_10063770213300005364Switchgrass RhizosphereMEKPSARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKVSAADHTI
Ga0070688_10089266433300005365Switchgrass RhizosphereFNKQINMEKPNARGPSPGRKAVNALGARLNRKSKRPPPLPSKKKVSDTDRTANR*
Ga0066681_1025438913300005451SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKISDAD
Ga0066681_1036709313300005451SoilRGPSPGRKAVHALGARLNRKPKQPPPLPLKKKISNADRTANR*
Ga0070698_10048441413300005471Corn, Switchgrass And Miscanthus RhizosphereRGPSPGRKAVHALGARLNRKSKRPPPLPFKKKISEADRTVNR*
Ga0066695_1037360133300005553SoilTTSIIDMEKPTARGPSPSRKAIHVLGPRLNRKPKRPPPVPMKKKAPESDRTGTR*
Ga0066695_1039894833300005553SoilINMEKPTARGPSPGRKAVHALGARLNRKPKQPPPLPLKKKISNADRTANR*
Ga0066661_1069032713300005554SoilMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR*
Ga0066698_1015209013300005558SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDA
Ga0066670_1005399823300005560SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISNADRTVNR*
Ga0066705_1061076333300005569SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDADRMVNR*
Ga0066694_1006377933300005574SoilMEKPTSRGPSPGRKAVHALGARMNRKPKRPPPLPLKKKVSD
Ga0068857_10092812533300005577Corn RhizosphereGRKATHALGSRLNRKPKQPPPLPLKKKLSKTDGTISP*
Ga0066706_1022074523300005598SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDADRTVNR*
Ga0066903_10041834643300005764Tropical Forest SoilMEKPTARGPSPGRKAVHTLGARLNRKPKQPPPLPFKKKISDADRTVIR*
Ga0066903_10655344733300005764Tropical Forest SoilLYNMEKPTSRGPSPGRKAVHALGARLNRKPKRPPPLPSKKKVSSGDRVVNP*
Ga0066903_10799077423300005764Tropical Forest SoilMEKPSARGPSPGRKAVHTLGARLNRKPKPPPPLPSKKKVSAADRMINR*
Ga0068863_10039628223300005841Switchgrass RhizosphereMEKPTSHGPSPGRKATHALGSRLNRKPKQPPPLPLKKKPSKTDGTINR*
Ga0081455_1056193923300005937Tabebuia Heterophylla RhizosphereMEKPSARGPSPGRKAVHVLGARLNRKPKRPPPLPSKEKVSDVERMVNR*
Ga0081455_1080751023300005937Tabebuia Heterophylla RhizosphereMRWHKCPDNEREINMEKPTVRGPSPGRKAVHALGTKLNRKHKQPPPLPSKKKISNPDRTFGR*
Ga0070717_1167790233300006028Corn, Switchgrass And Miscanthus RhizosphereSTTTSVDMEKPTARGPSPGRKAIHVLGPKLNRKPKRPPPLPVKKKAPESDRTGTR*
Ga0066656_1048663433300006034SoilAVHALGARLNRKPKRPPPLPSKKKISDADRPANR*
Ga0075018_1024642923300006172WatershedsMEKPTSRGPSPGRKAVHALGARLNRKPKQPPPLPLKKKISNADRTINC*
Ga0070712_10092134223300006175Corn, Switchgrass And Miscanthus RhizosphereMEKPTARGPSPGRKAIHVLGQRLNRKPKRPPPLPVKKKAPESDRTGTR*
Ga0068871_10032099543300006358Miscanthus RhizosphereNMEKPNARGPSPGRKAAHALGGRLNRKPKRPPPLPSKKKVSDANRTANR*
Ga0068871_10116682923300006358Miscanthus RhizosphereMEKPNARGPSPGRKAAHALGGRLNRKPKRPPPLPSKKKVSDANR
Ga0079222_1083246113300006755Agricultural SoilMRCPKGLNQQQYHMEKPTSHGPSPGRKAIHALGAKLNRKPKRPPALPPKKTGAGADRRLS
Ga0075425_10117951333300006854Populus RhizosphereKAVHALGARLNRKLKRPPPLPSKKKLSDADRTVNR*
Ga0075426_1041592743300006903Populus RhizosphereGRKAVHALGARLNRKLKRPPPLPSKKKLSDADRTVNR*
Ga0075424_10036725123300006904Populus RhizosphereMEKPTSRGPSAGRKAVHALGARLNRKPKRPPPLPSKKKVSSGDRAVDP*
Ga0075424_10138977723300006904Populus RhizosphereMFLPTITMEKPSARGPSPGRKAVHVLGARLNRKPKRPPPLPSKKKVSDAERMVNR*
Ga0075435_10168838823300007076Populus RhizosphereHKRLYNMEKPTSRGPSPGRKSVQALGARLNRKPKRPPPLPSKKKVSSGDRAVNP*
Ga0066710_10380442413300009012Grasslands SoilNASTRSKINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDVNRTVDR
Ga0066709_10247875233300009137Grasslands SoilNASTRSKINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDANRTVDR*
Ga0126382_1070552713300010047Tropical Forest SoilRKAVHALGPRLNRKPKRPPPLPVKKNVPDPGRIVNC*
Ga0126382_1202506133300010047Tropical Forest SoilGPSPGRKAIRLLGPRLNPKTKRPPPLPLKKNATDAGGTINR*
Ga0134111_1055067223300010329Grasslands SoilSKINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDANRTVDR*
Ga0126376_1080830013300010359Tropical Forest SoilIAMEKPTTLGPSPGRKAVHALGPRLNRKTKRPPPLPSKKKISGADRTVNR*
Ga0126372_1053873033300010360Tropical Forest SoilMEKPSTRGPSPGRKAIHVLGAKLNRKPKPPPALPPKKNISKADRC*
Ga0126372_1222058113300010360Tropical Forest SoilITMEKPNARGPSPGRKAVRALGHRLNRKPKRPPPLPAFAEATVRKPAKKNAPEPGRTVNR
Ga0134128_1170505413300010373Terrestrial SoilNEQLKMEKPSARGPSPGRKASHALGARLNRKPKRPPPLPLKKKLSNPDQTLSH*
Ga0138514_10001977113300011003SoilTNASTGSKINMEKPTSRGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR*
Ga0137388_1191695513300012189Vadose Zone SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDAD
Ga0137383_1038172113300012199Vadose Zone SoilKINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKISDADRPANR*
Ga0137376_1156942523300012208Vadose Zone SoilASTRSKINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKSSNADGTVNR*
Ga0137377_1169984233300012211Vadose Zone SoilSKINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKISDADRPVNR*
Ga0137386_1063809523300012351Vadose Zone SoilMEKPTAHGPSPGRKAVHALGARLNRKPKRPPPLPVKKKISD
Ga0137385_1013412413300012359Vadose Zone SoilQGSKINMEKPTARGPSPGRKAVHALGAKLNRKPKRPPPLPLKKKISDADRPANR*
Ga0137398_1042737013300012683Vadose Zone SoilMEKPTSRGPSPGRKAVQALGARLNRKSKRPPPLPLKKKISEAGRTVNR
Ga0157302_1008150813300012915SoilTTSKTNMEKPNARGPSPGRKAAHALGGRLNRKPKRPPPLPSKKKVSDANRTANR*
Ga0126375_1132961513300012948Tropical Forest SoilVALAAASASTTIKIEMEKPTARGPSPGRKAVHALGPRLNRKPKRPPPLPVKKNVPDPGRMVNR*
Ga0164298_1025734613300012955SoilINMEKPTSRGPSAGRKAVHALGARLNRKPKRPPPLPSKKKVSDSDRTVNR*
Ga0164298_1164836213300012955SoilYAFDTNVCTTSKICMEKPSTRGPSPGRKAIHVLGAKLNRKTKQPPPLPPKKNISKADRC*
Ga0164303_1025125023300012957SoilMEKPSTRGPSPGRKAIHVLGAKLNRKPKQPPDMPLKKNISKADRC*
Ga0163162_1288593013300013306Switchgrass RhizosphereDDMEKPTSRGPSPGRKAVYALGARLNRKTKRPPPLPSKKMSGVNRTVNR*
Ga0163163_1283336023300014325Switchgrass RhizosphereEQLKMEKPSARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKVSAADHTIVR*
Ga0137405_106007743300015053Vadose Zone SoilMEKPTARGPSPGRKAVHALGAKLNRKPKRPPPLPLKKKSSDADRPANR*
Ga0137405_108800063300015053Vadose Zone SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKISDADRPVDR*
Ga0137405_126403043300015053Vadose Zone SoilMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISDADRTV
Ga0182006_101426423300015261RhizosphereMEKPNARGPTPSRKAVHALGARLNRKPKQPPPLPVKKNVSKPDSADR*
Ga0132257_10231842713300015373Arabidopsis RhizosphereRGPSPGRKAVHALGARLNRKPKQPPPLPSKKKILNADRTLGR*
Ga0132257_10297256333300015373Arabidopsis RhizosphereEQLKMEKPSARGPSPGRKAVHALGVRLNRKPKRPPPLPSKKKVSDTDTLVKR*
Ga0182034_1014815443300016371SoilRLYNMEKPTSHGPSPGRKAVHALGARLNRKTKQPPPLPPKKKLSDADRVVNRGT
Ga0184605_1041478013300018027Groundwater SedimentSTGSKINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0184620_1010820213300018051Groundwater SedimentTNASTGSKINMEKPTSRGPSPGRKAVHALGARLNRKPKQPPQLPLKKKLSGADRPANR
Ga0184619_1000424623300018061Groundwater SedimentMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVSR
Ga0184632_1022506813300018075Groundwater SedimentMEKPSARGPSPSRKAVHVLGHRLNRKPKQPPALPSKKKAPEPYRTGAC
Ga0184632_1037110713300018075Groundwater SedimentGSKINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKSSNAARTVNR
Ga0190268_1139647313300018466SoilMEKPTARGPSPGRKAVHALGARLNRKSKLPPPLPLKKK
Ga0193705_101824943300019869SoilNASTRSNINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0193701_103196033300019875SoilMRLTQNAFTTSKINMEKPTSRGPSPGRKAVHALGARLNRKPKQPPQLPLKKKLSGADRPANR
Ga0193725_113435713300019883SoilARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0193747_100113543300019885SoilMEKPTSRGPSPGRKAIHALGARLNRKPKRPPPLPLKKKISDTDRTVNR
Ga0193727_105172033300019886SoilMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0193728_105878243300019890SoilINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0193711_100634413300019997SoilMEKPTSRGPSPGRKAVHALGARLNRKSKRPPPLPLKKKFR
Ga0193710_101166113300019998SoilASTRSKINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0193735_101476743300020006SoilMEKPTARGPSPGRKAVHALGARMNRKSKQPPPLPLKKKISDADRTVNR
Ga0193732_107070323300020012SoilSKINMEKPTSRGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0193724_105225433300020062SoilPPVREQLRGRKAVHVLGARLNRKPKQPPPLPLKKKISNADRTVNR
Ga0193724_106421113300020062SoilNEQINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPSKKKVSDADRTVNR
Ga0193694_105424313300021415SoilMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISEAD
Ga0126371_1025420213300021560Tropical Forest SoilTYAFDSNVCTTSKICMEKPSTHGPSPSRKAIHVLGAKLNRKPKRPPPLPPKKNISKADRC
Ga0222622_1000219853300022756Groundwater SedimentMNLIRMRLTQNAFTTSKINMEKPTSRGPSPGRKAVHALGARLNRKPKQPPQLPLKKKLSGADRPANR
Ga0222622_1138077523300022756Groundwater SedimentMEKPTARGPSPGRKAVHALAARLNRKSKRPPPLPL
Ga0207666_100372313300025271Corn, Switchgrass And Miscanthus RhizospherePTVRGPSPGRKAVHALGAKLNRKPKRPPPLPSKKNVSNAVRLVNR
Ga0207690_1018781913300025932Corn RhizosphereMEKPNARGPSPGRKAAHALGARLNRKPKRPPPLPLKKKASGAE
Ga0207712_1008240843300025961Switchgrass RhizosphereARINMEKPTVRGPSPGRKAVHALGAKLNRKPKRPPPLPSKKNVSNAVRLVNR
Ga0209470_127618813300026324SoilMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKK
Ga0209159_127362613300026343SoilDTNASATSKINMEKPTARGPSPGRKAVHALGARLNRKPKRPPPLPLKKKISNADRTVNR
Ga0209735_108119213300027562Forest SoilMEKPSARGPSPGRKAAHALGARLNRKPKQPPPLPLKKKAFAAERT
Ga0307295_1001523323300028708SoilMRLTQNAFTTSKINMEKPTSRGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVSR
Ga0307305_1006139813300028807SoilMEKPTARGPSPGRKAVHALGARMNRKSKQPPPLPLKK
Ga0307302_1050490833300028814SoilTSSKINMEKPTARGPSPGRKAVHALGARLNRKSKRPPPLPLKKKISDADRTVNR
Ga0307310_1074914823300028824SoilMRLTQNAFTTSKINMEKPTSRGPSPGRKAVHALGARLNRKPKQPPRLPLKKKLSGADRPANR
Ga0170824_11382372913300031231Forest SoilMEKPTSRGPSPGSKAVHALGARLNRKSKPPPLPLKKEISDADRTVNR
Ga0307469_1233759523300031720Hardwood Forest SoilRNRLYNEQDHMEKPTSRGPSPGRKAIHALRARLNRKPKRPPPLPLKKKISDTDRTVNR
Ga0310812_1000914663300032421SoilMEKPNARGPTPSRKAVHALGARLNRKPKQPPPLPVKKNVSKPDSADR
Ga0310810_1103953813300033412SoilTRSKINMEKPTARGPSPGRKAIHALGARLNRKSKRPPPLPLKKKISDADRTVNR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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