Metagenome / Metatranscriptome Family F067013

Overview

Basic Information

• Family ID: F067013
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 126
• Average Sequence Length: 46 residues
• Representative Sequence: PPVARRYRDLTDADGELRADAPVSEREARLAGQVLRVVMRDLDPGR
• Number of Associated Samples: 117
• Number of Associated Scaffolds: 126

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.79 %
• % of genes near scaffold ends (potentially truncated): 97.62 %
• % of genes from short scaffolds (< 2000 bps): 92.06 %
• Associated GOLD sequencing projects: 109
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (88.095 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.318 % of family members)
• Environment Ontology (ENVO): Unclassified (20.635 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (43.651 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 36.49%
  β-sheet: 2.70%
  Coil/Unstructured: 60.81%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF00072	Response_reg	12.70
PF01964	ThiC_Rad_SAM	5.56
PF07690	MFS_1	5.56
PF02775	TPP_enzyme_C	3.17
PF01565	FAD_binding_4	2.38
PF16326	ABC_tran_CTD	1.59
PF03600	CitMHS	0.79
PF07519	Tannase	0.79
PF01261	AP_endonuc_2	0.79
PF00082	Peptidase_S8	0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0422	4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC	Coenzyme transport and metabolism [H]	5.56
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.17
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.59
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.79
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.79
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.79
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.79
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	0.79
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.79
COG1014	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit	Energy production and conversion [C]	0.79

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.10 %
Unclassified	root	N/A	11.90 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.10 %
Unclassified	root	N/A	11.90 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.10 %
Unclassified	root	N/A	11.90 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.14 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.59 %
Unclassified	root	N/A	11.90 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.59 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.17 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Unclassified	root	N/A	11.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.16 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.37 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.59 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.38 %
Unclassified	root	N/A	11.90 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.79 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.37 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.59 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.79 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.79 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.79 %
Unclassified	root	N/A	11.90 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.37 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.79 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Enhydrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter	0.79 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.79 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.79 %
Unclassified	root	N/A	11.90 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.37 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.79 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Enhydrobacter aerosaccus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Enhydrobacter → Enhydrobacter aerosaccus	0.79 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.79 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.79 %
Unclassified	root	N/A	11.90 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000571|JGI1358J11329_10034753	All Organisms → cellular organisms → Bacteria	2255
3300001356|JGI12269J14319_10247559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666
3300001431|F14TB_100029319	Not Available	529
3300001593|JGI12635J15846_10069435	All Organisms → cellular organisms → Bacteria	2611
3300002886|JGI25612J43240_1033828	All Organisms → cellular organisms → Bacteria → Acidobacteria	741
3300004092|Ga0062389_101257686	All Organisms → cellular organisms → Bacteria → Acidobacteria	926
3300004152|Ga0062386_100217534	All Organisms → cellular organisms → Bacteria → Acidobacteria	1506
3300004152|Ga0062386_100306974	All Organisms → cellular organisms → Bacteria → Acidobacteria	1266
3300004635|Ga0062388_102909670	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	505
3300005174|Ga0066680_10827204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.89%
Host-Associated	Host-Associated	11.11%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	30.95%
Plants	Host-Associated → Plants	11.11%
Terrestrial	Environmental → Terrestrial	57.94%

Category

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	0.79%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%
Freshwater	Environmental → Aquatic → Freshwater	23.81%
Peat	Environmental → Terrestrial → Peat	4.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.73%
Sediment	Environmental → Aquatic → Sediment	6.35%
Soil	Environmental → Terrestrial → Soil	51.59%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.79%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.38%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.59%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.79%
Lake	Environmental → Aquatic → Freshwater → Lake	0.79%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.76%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.76%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.11%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	1.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.79%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.43%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%

Habitat

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.38%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.59%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	1.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.76%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.59%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.38%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	7.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.38%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.38%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.79%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.79%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000571	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m	Environmental
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1358J11329_100347534	3300000571	Groundwater	ARLPPVARNYRDLTDADGELRADAPVSEREARLSGQVLRVVMRDLDPGR*
JGI12269J14319_102475593	3300001356	Peatlands Soil	ARLPAVARTYRDDDGNDTTTVSERDARLAGQVLRVVMRDLDPGR*
F14TB_1000293191	3300001431	Soil	LPPVARRYRELLDADGRLPKDVAVSARDARTATQVLRIVMSDLDPGR*
JGI12635J15846_100694351	3300001593	Forest Soil	KTGLIRGGCARLPAVAWNYRDESGSAKAAASENDARRTGQVLHVVMRDLDPGR*
JGI25612J43240_10338281	3300002886	Grasslands Soil	IRGGCARLPPVARAYHDLTDESGELRAGVHVTEREARLAGQVLRVVMRDLDPGR*
Ga0062389_1012576863	3300004092	Bog Forest Soil	CARLPAVARAYRDHDIANVESDPKATVSERDARQTGQVLHVVMRDLDPGR*
Ga0062386_1002175341	3300004152	Bog Forest Soil	RLPAIARTYRDQVDVDAMTSKPEISERDARQTSQVLRVVMRDLDPGR*
Ga0062386_1003069744	3300004152	Bog Forest Soil	RLPAVARTYRDHTDAEGDSGPKATVSERDARRAGQVLHVVMRDLDPGR*
Ga0062388_1029096702	3300004635	Bog Forest Soil	AGLIRGGCARLPSVAWTYREHGSKAPISENDARRAGQVLHVIMRDLDPGR*
Ga0066680_108272041	3300005174	Soil	ARSYRDLTYAKGESGAKATVSERHARLAGQVLHVVMRDLSPGR*
Ga0066675_107079052	3300005187	Soil	AGLILGGCARLPPVARAYRDLADGTGELRSDIAVSEREARLAGQVLRVVIRDLDPGR*
Ga0065705_103529912	3300005294	Switchgrass Rhizosphere	GVIQGGCARLPPVARQYRDLTDSDGALRPDVRVSEREARLAGQVLVVVMRDLDPGR*
Ga0070709_118104051	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	IRGGCTRLPAVARTYRDPIGTVPASVTEREARTTGQVLHVVMRDLDPGR*
Ga0070733_101215155	3300005541	Surface Soil	NGCARLPAVVRTYRDPTNTDDKSGPKTAVSERNARLAGQVLHVVMRDLDPGR*
Ga0066694_103032311	3300005574	Soil	LPPVARTYRDLTDAEGQFRSDVSVSERDARITAQVLHVVMRDLDPGR*
Ga0070761_104045393	3300005591	Soil	RLPAVARTYRDDGGDDATTVSERDARLAGQVLRVVMRDLDPGR*
Ga0066903_1022516622	3300005764	Tropical Forest Soil	PPVARTYRSLVDDHGQLRGDAQVSEREARIATQVLRVVMRDLDPGR*
Ga0081455_101772552	3300005937	Tabebuia Heterophylla Rhizosphere	IRGGCARLPAVARGYHELTDEAGDLRAGAQVTEREARLAGQVLRVVMRDLDPGR*
Ga0075014_1001898391	3300006174	Watersheds	AWRYRDLTAVEGEPGPSAKVSEDDARRALQVLHVVMRDLDPGR*
Ga0070765_1003822283	3300006176	Soil	LPVVAWTYRDNGENGLMPTISEGDARRAGQVLRVVMRDLDPGR*
Ga0075433_106065971	3300006852	Populus Rhizosphere	LPPVARAYHDLTDETGELRAGVHVTEREAKLAGQVLRVVMRDLDPGR*
Ga0075433_115870732	3300006852	Populus Rhizosphere	EAGELRAGVHVTEREARLAGQVLRVVMRDLDPGR*
Ga0066797_13201191	3300006864	Soil	PPVARRYRDLTDADGELRVDAPVSEREARLAGQVLRVVMRDLDPGR*
Ga0075426_114010952	3300006903	Populus Rhizosphere	EDGHVRPGAIVSERAARLAGQVLRVVIRDLDPQR*
Ga0075424_1016854882	3300006904	Populus Rhizosphere	TDEAGELRAGVHVTEREARLAGQVLRVVMRDLDPGR*
Ga0099830_113717101	3300009088	Vadose Zone Soil	SPTDAAGDLRPDVTISERKTQLAGQVLRVVMRDLDPGQ*
Ga0099827_110755441	3300009090	Vadose Zone Soil	KYRDLTDADGELRPDAQVSERDARLADQVLRVVMRDLDPGR*
Ga0105247_104452862	3300009101	Switchgrass Rhizosphere	AYRDLTDADGHLRPDVSVSERDARVAGQVLRVVMRDLDPSR*
Ga0066709_1024633012	3300009137	Grasslands Soil	VARVYHYRTDESGELRAGVHVTEREARLAGQVLRVVMRDLDPGR*
Ga0075423_104461401	3300009162	Populus Rhizosphere	YHDLTDEAGELRAGVHVTEREARLAGQVLRVVMRDLDPGR*
Ga0075423_104993501	3300009162	Populus Rhizosphere	IIRGGCARLPPVARAYHDLTDEAGELRAGVHVTEREARLAGQVLRVVMRDLDPGR*
Ga0114945_110608291	3300009444	Thermal Springs	IGGGCARLPPVARTYRDLTDADGELRADVNVSEREARLAAQVLRVVMRDLNPGR*
Ga0116107_10577934	3300009548	Peatland	ARLPAVARTYRDRADAGGESRPKATVSERDARQTGQVLRVVMRDLDPGR*
Ga0116138_10370732	3300009552	Peatland	YRDYTDGGDGSELKATVTDRDARQAGQVLHVVMRDLDPGR*
Ga0116116_10550321	3300009621	Peatland	PAVARTYRDRADAGGESRPKATVSERDARQTGQVLRVVMRDLDPGR*
Ga0116133_10560993	3300009623	Peatland	NGCARLPAVARTYRDYTDADSGPKTTVSERDARVAGQVLHVVMRDLDPGR*
Ga0116125_10005311	3300009628	Peatland	RDRGEVPAGTQVSEREARLCAQVLRVIMRDLDPGR*
Ga0116122_11474211	3300009639	Peatland	RDYTDADSGPKTTVSERDARVAGQVLHVVMRDLDPGR*
Ga0116106_11846903	3300009645	Peatland	LIRSGCARLPAVARTYRDYTDSDSGPKTTVSERDARVAGQVLHVVMRDLDPGR*
Ga0116135_12594321	3300009665	Peatland	LPAVARTYRDQGDGAQRVKISERDARLAGQVLNVVMRDLDPSR*
Ga0116131_11336891	3300009760	Peatland	IRSGCARLPAAARTYRDYTDANGEQGLKATVSARDARQTGQVLRVVMRDLDPGR*
Ga0134111_105484222	3300010329	Grasslands Soil	RLPAVARRYKDLTDPDGQVRPGAAVSERDARVAGQVLRVVMRDLDPGR*
Ga0134071_107102322	3300010336	Grasslands Soil	EGLIRGGCARLPPVARTYRDLTDAEGQFRSDVSVSERDARVTTQVLHVVMRDLDPGR*
Ga0074046_1000658312	3300010339	Bog Forest Soil	CARLPAVARTYRDHTDAEGDSGPKATVSERDARRAGQVLHVVMRDLDPGR*
Ga0074044_100733755	3300010343	Bog Forest Soil	YARLPAVARRYRDLTDAGESGGPKATVSERDARLAGQVLHVVMRDLDPGR*
Ga0126379_103580201	3300010366	Tropical Forest Soil	YHDLTDEAGELRAGVHVTAHEARLAGQVLRVVMRDLDPGR*
Ga0134125_120095752	3300010371	Terrestrial Soil	GCARLPAVARAYHDLTDEAGELRTGVQVTEREARLAGQVLRVVMRDLDPGR*
Ga0136449_1005916135	3300010379	Peatlands Soil	LPAVARTYRDHTPADSESGPKAIVSERDARQAGQVLRVVMRDLDPGR*
Ga0105246_121642221	3300011119	Miscanthus Rhizosphere	RQYRDLTDADGELRAEAVVSEREARLAGQVLRVVMRDLDPGR*
Ga0137392_113442871	3300011269	Vadose Zone Soil	SGWARLPAVARTYRDLTHANGESGAKATVSERNARLAAQVLHVVMRDLNPGR*
Ga0137378_102578341	3300012210	Vadose Zone Soil	RLPLVARTYRNLTDANGESHSKATVSESDARRTGQVLHVVMRDLDPGR*
Ga0137434_10057132	3300012225	Soil	RDLTDADGELRADAKVSEREARLAGQVLRVVMRDLDPGR*
Ga0137398_104105011	3300012683	Vadose Zone Soil	GCARLPAIARSYRDVAESNGDGGLKATVSARDARTAGQVLHVVMRDLNPGR*
Ga0137395_102209022	3300012917	Vadose Zone Soil	LPQVARKYRELADAGGERGPKVMISERDARLAGQVLHVVMRDLHPGR*
Ga0137395_109459602	3300012917	Vadose Zone Soil	LPQVARKYRELADAGGERGPKVMISERDARLAGQVLHVVMRDLDPGRY*
Ga0137396_104922091	3300012918	Vadose Zone Soil	RSGCARLPLVARTYRNLTDANGDSRSKATISERDARRTGQVLHVVMRDLDPGR*
Ga0137419_106704241	3300012925	Vadose Zone Soil	VARQYKDLSDADGRLRPDATVSERDARVAGQVLHVVMRDLDPGR*
Ga0181518_101340951	3300014156	Bog	LPAVSRAYRDLTDTNDEGGSKAISERDARQTGQVLHVVMKDLDPGR*
Ga0181538_102161634	3300014162	Bog	ARAYRDLTVSNGERGLKAKVSDRDARMAGQVLRVVMRDLDPGR*
Ga0181538_102186621	3300014162	Bog	PAIAQSYRELISTNGQQRSQAGVSERDARVTGQVLHVVMRDLNPGR*
Ga0157380_105782352	3300014326	Switchgrass Rhizosphere	RLPAQARTYRDLTDAEGQLRSDVTVSERDARITSQVLHVVMRDLNPGR*
Ga0137420_14504284	3300015054	Vadose Zone Soil	CARLPLVARTYRNLTDANGESHSKATISERDARRTGQVLHVVMRDLDPGR*
Ga0181503_10316971	3300016698	Peatland	RAYRDHSGAEGSGELNSKVTERDARQTGQVLHVVMRDLDPGR
Ga0187806_10538661	3300017928	Freshwater Sediment	RTYRDDGGNDTTTVSERDARLAGQVLRVVMRDLDPGR
Ga0187847_108375372	3300017948	Peatland	GIARAYRDHTGAEGGDGPNNKITERDARQTGQVLHVVMRDLDPGR
Ga0187780_112125972	3300017973	Tropical Peatland	DLTDGNGEPLGDAPVSEREARTAAQVLRVVMRDLDPGR
Ga0187823_101507782	3300017993	Freshwater Sediment	ARRYRDLNVAGSDLGSEITVSERDARLAGQVLHVTMRDLDPGR
Ga0184610_10474671	3300017997	Groundwater Sediment	AGIIHGGCARLSPVARSYRDLTDVDGELRQDVTVSEREARLAGQVLRVVMRDLDPGR
Ga0187870_12725081	3300017998	Peatland	DGGDGSELKATVTDRDARQAGQVLHVVMRDLDPGR
Ga0187872_101783401	3300018017	Peatland	IRSGCAGLPAIARTYRDYTDADGGPKATVSERDARVTGQVLHVVMRDLDPGR
Ga0187885_102244133	3300018025	Peatland	LPAVARTYRDYTDADGGPKATVSERDARVAGQVLHVVMRDLDPGR
Ga0187885_105081581	3300018025	Peatland	YRDHSDAEDELGTNATVSERDARQAGQVLHVVMRDLDPGR
Ga0184626_101022171	3300018053	Groundwater Sediment	RGGCARLPPVARTYRDLTDAAGELRADAPVSERDARVAGQVLRVVMRDLDPGR
Ga0184640_100841842	3300018074	Groundwater Sediment	PPVARRYRDLTDADGELRADAPVSEREARLAGQVLRVVMRDLDPGR
Ga0184612_102046951	3300018078	Groundwater Sediment	GADGELRADAPVSEREARLAGQVLRVVMRDLDPGR
Ga0184639_103279952	3300018082	Groundwater Sediment	MLPIVPPVARKYRDLTDADGELHADAPVSEREARLAGQVLRVVMRDLDPGR
Ga0184629_106258202	3300018084	Groundwater Sediment	CARLPHVARTYQDLTDADGELLSDAPVSEREARLAGQVLRVVMRDLDPGR
Ga0187893_108689642	3300019487	Microbial Mat On Rocks	RTYRELANPDGQPRPDVTISEREARLAGQVLQVVMRDLDPGR
Ga0210403_106626021	3300020580	Soil	YREHTDDGGENRVKIQVSERDARRTGQVLHVVMRDLDPGR
Ga0210395_101067121	3300020582	Soil	RLPAVARTYRDDGGDDATTVSERDARLAGQVLRVVMRDLDPGR
Ga0210395_104056362	3300020582	Soil	RSGCARLPAAARNYRDHADVDGESGSKSSISERDARRAGQVLHVVIRDLDPGR
Ga0210379_101778991	3300021081	Groundwater Sediment	RDLTDATGELRADAPVSEREARLAGQVLRVVMRDLDPGR
Ga0210396_113439932	3300021180	Soil	ARLPVVAWIYRDHGENSSEATISENDARRAGQVLHVVMRDLDPGR
Ga0210393_110260412	3300021401	Soil	RLPAIARTYRDQTSADGGSAFEVEVAERDAKLTGQVLRVVMRDLDPGR
Ga0210389_104665961	3300021404	Soil	RDHDDNGLKSTVSERDARQTGQVLHVVMRDLDPGR
Ga0210394_101008581	3300021420	Soil	ARLPAAARRYRDHNENDAAGISERDARLAGQVLHVLMRDLNPGR
Ga0210384_103868501	3300021432	Soil	TYRDDSGDDATTVSERDARLAGQVLRVVMRDLDPGR
Ga0210402_114520591	3300021478	Soil	IRGGCARLPAVARAYRDHVDNGKSVTISERDARLAGQVLNVIMRDLNPGR
Ga0210410_105277804	3300021479	Soil	LIRSGCARLPAAARTYRDHTDTPSENGAEANISERDARVAGQVLHVVMRDLDPGR
Ga0210409_115755931	3300021559	Soil	RSGCARLPATARTYRDRVSSDSEGVGQGTVSESDARRTGQVLHVIMRDLDPGR
Ga0242649_10336461	3300022509	Soil	IRSGCARLPAVARTYRDLTDADCESGSKATVSESNARLAGQVLRVVMRDLDPGR
Ga0242678_10278851	3300022715	Soil	AVARTYRDLTDADCESGSKATVSESNARLAGQVLRVVMRDLDPGR
Ga0224547_10453321	3300023255	Soil	RSGCARLPAIARTYRDRMNAEGDSIPQGTVSESDAKRTGQVLHVIMRDLDPGR
Ga0208192_10542523	3300025477	Peatland	RTYRDHTDAGGGPKTTVSERDARVAGQVLHVVMRDLDPGR
Ga0207928_10210592	3300025494	Arctic Peat Soil	IRSGCARLPPVTRRYRDLTDADGELRAHAPVSEREARIAAQVLRVVMRDLDPGR
Ga0207645_107659272	3300025907	Miscanthus Rhizosphere	PVARAYRDIAAADGEPAPDVPVSERDARVAGQVLLVVMRDLDPGR
Ga0207648_110548721	3300026089	Miscanthus Rhizosphere	ILGGCARLPPVARAYRDLSDADGQLRPDVAVSGRDAQLARQVLMVVLRDLDPGR
Ga0207674_112643202	3300026116	Corn Rhizosphere	GGCARLPPVARQYRDLTDADGELRAEAVVSEREARLAGQVLRVVMRDLDPGR
Ga0209802_12956831	3300026328	Soil	ARSYRDLTYAKGESGAKATVSERHARLAGQVLHVVMRDLSPGR
Ga0209117_10024461	3300027645	Forest Soil	RGGCARLPEVARKYRDSADTNGDGHSKAGVSEREARLTGQVLHVVMRDLDPGR
Ga0209039_104236992	3300027825	Bog Forest Soil	RLPAIARTYRDQVDVDAMTSKPEISERDARQTSQVLRVVMRDLDPGR
Ga0209515_102029642	3300027835	Groundwater	RDLTDSDGEPGPDVTVSERDARLAGQVLHVIMRDLDPGR
Ga0209517_104699062	3300027854	Peatlands Soil	RTYRDYTDGGDGSELKATVTDRDARQAGQVLHVVMRDLDPGR
Ga0209167_100809915	3300027867	Surface Soil	IARTYRDDGENETTMASERDARLAGQVLRVVMRDLDPGR
Ga0209167_101691721	3300027867	Surface Soil	NGCARLPAVVRTYRDPTNTDDKSGPKTAVSERNARLAGQVLHVVMRDLDPGR
Ga0265356_10329181	3300028017	Rhizosphere	ARAYRDEGGGVKAEVTERDARTAGQVLHVVMRDLDPGR
Ga0209526_103746231	3300028047	Forest Soil	IHSGCARLPPVARRYRDINVDGSDLSSDITVSERDARLAGQVLHVVMRDLDPGR
Ga0137415_107539941	3300028536	Vadose Zone Soil	GCARLPLVARTYRNLTDANGDSRSKATISERDARRTGQVLHVVMRDLDPGR
Ga0302145_101334431	3300028565	Bog	RGGCARLPAVARAYRDEAQADSSAEISERDARTTGQVLNVVMRDLDPGR
Ga0302231_100287461	3300028775	Palsa	EDDSGNEMKATISEREARLAGQVLHVVMRDLDPGR
Ga0307282_103537651	3300028784	Soil	ARLPAVARSYRDLTDADGQLRSDVAVSGREAQLARQVLMVVLRDLDPGR
Ga0308309_111937793	3300028906	Soil	IARTYRDDGETDTTAVSERDARLAGQVLRVVMRDLDPGR
Ga0311340_113290481	3300029943	Palsa	LPAVARAYRENSQAAEERDTQAPVSERDARQAGQVLRVVMRDLDPGR
Ga0311371_108201972	3300029951	Palsa	RDPADADGGSKAAVSERDARLAGQVLRVVMRDLDPGR
Ga0302276_103847582	3300029992	Bog	GCARLPAVARTYRDPTEANGENVLKATASERDARLAGQVLHVIMRDLDPGR
Ga0310038_100070229	3300030707	Peatlands Soil	TYRDDDGNDTTTVSERDARLAGQVLRVVMRDLDPGR
Ga0308197_103377621	3300031093	Soil	GLIRSGCARLPPVARRYKDLTDGDGELRADATVSEREARLAGQVLHVVMRDLDPGR
Ga0170822_154664252	3300031122	Forest Soil	ARLPEVAWTYRDHDEGGSDMAISEQDARRAGQVLHVVMRDLDPGR
Ga0310686_1153138591	3300031708	Soil	ARLPAVARTYRDAEGGSKAIVSERDAQVAGQVLRVVMRDLDPGR
Ga0310686_1198557341	3300031708	Soil	ARLPTIARTYRDDGEKGSRTMVSEHDARKAGQVLHVIMRDLDPGR
Ga0307478_115076621	3300031823	Hardwood Forest Soil	LIRSGCARLPAIARTYRDRMNAEGDSVPRETVSESDAKRTGQVLHVIMRDLDPGR
Ga0315290_111817122	3300031834	Sediment	PVARTYRDLTDADGELRVDAPVSEREARLAGQVLRVVMRDLDPGR
Ga0307471_1024322331	3300032180	Hardwood Forest Soil	GGCARLPAVARAYHDLTDESGELLAGAHVTERDARLAAQVLRVVMRDLDPGR
Ga0335078_117700331	3300032805	Soil	RGGCARLPAIARSYRDLISADAGHRPEASVSERDARVTGQVLHVVMRDLNPGR
Ga0370492_0465176_291_425	3300034282	Untreated Peat Soil	VARTYRDPTEANGENVLKATASERDARLAGQVLHVIMRDLDPGR
Ga0364943_0166961_2_136	3300034354	Sediment	VARRYRELTDGDGAPRPDVTVSEREARTAGQVLVVVMRDLDPGR