NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F066908

Metagenome / Metatranscriptome Family F066908

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F066908
Family Type Metagenome / Metatranscriptome
Number of Sequences 126
Average Sequence Length 105 residues
Representative Sequence MRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Number of Associated Samples 100
Number of Associated Scaffolds 126

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 27.78 %
% of genes near scaffold ends (potentially truncated) 50.00 %
% of genes from short scaffolds (< 2000 bps) 81.75 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (56.349 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(13.492 % of family members)
Environment Ontology (ENVO) Unclassified
(35.714 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(65.079 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140
1GPKC_07529700
2ICChiseqgaiiDRAFT_21035192
3INPhiseqgaiiFebDRAFT_1052852902
4INPhiseqgaiiFebDRAFT_1052898991
5JGI10214J12806_107329051
6JGI10220J13317_103071271
7F14TB_1024065591
8soilL1_100725635
9soilL2_100386272
10soilH2_1002113812
11soilH2_100325425
12Ga0062593_1000942643
13Ga0062593_1008298531
14Ga0062589_1000026762
15Ga0062589_1007857391
16Ga0062590_1019314881
17Ga0062595_1006393302
18Ga0058860_118163311
19Ga0062594_1004911221
20Ga0065704_100836085
21Ga0065704_100946103
22Ga0065704_105194902
23Ga0065712_105314031
24Ga0065715_102821922
25Ga0065715_108051081
26Ga0070676_102419462
27Ga0066388_1050307932
28Ga0066388_1078316521
29Ga0070680_1015834221
30Ga0070689_1019583061
31Ga0070687_1000775701
32Ga0070669_1000056331
33Ga0070688_1013454041
34Ga0070659_1002861472
35Ga0070705_1009821911
36Ga0070694_1002535822
37Ga0070694_1016015291
38Ga0070678_1006826231
39Ga0070681_111808721
40Ga0070698_1001024885
41Ga0070699_1010169792
42Ga0070679_1016625121
43Ga0070686_1019652201
44Ga0070704_1022542592
45Ga0070664_1001309041
46Ga0070702_1012539282
47Ga0068864_1006553532
48Ga0066905_1007446781
49Ga0068870_100103641
50Ga0068863_1007628502
51Ga0068858_1023326631
52Ga0075417_101441662
53Ga0075422_102661242
54Ga0097621_1003101761
55Ga0097621_1004502752
56Ga0075428_1012960121
57Ga0068865_1000153486
58Ga0068865_1018862661
59Ga0075424_1011413012
60Ga0079219_107919652
61Ga0075419_100521024
62Ga0111539_101978252
63Ga0111539_103135793
64Ga0111539_114714532
65Ga0111539_119332232
66Ga0111539_128403282
67Ga0105245_108125873
68Ga0075418_100087654
69Ga0075418_101071344
70Ga0114129_131702581
71Ga0111538_118373072
72Ga0126382_100742983
73Ga0126372_121466641
74Ga0126377_103763352
75Ga0134124_105625092
76Ga0134121_119572821
77Ga0105246_102114802
78Ga0126375_102141232
79Ga0126375_106627442
80Ga0164299_107344361
81Ga0157372_116534141
82Ga0157379_111190471
83Ga0157376_115258642
84Ga0173478_103462951
85Ga0132258_110305741
86Ga0132258_135793253
87Ga0132258_139970942
88Ga0132256_1016636682
89Ga0132257_1008560631
90Ga0132255_1014548012
91Ga0132255_1059130542
92Ga0173481_106303381
93Ga0207697_100654522
94Ga0207682_101477652
95Ga0207643_102455393
96Ga0207643_105249742
97Ga0207660_101524791
98Ga0207660_113634141
99Ga0207649_101476314
100Ga0207659_1000016217
101Ga0207659_100821894
102Ga0207690_115508892
103Ga0207704_103785181
104Ga0207691_101323442
105Ga0207711_103186211
106Ga0207679_102550041
107Ga0207679_114791201
108Ga0207658_119113781
109Ga0207677_117490781
110Ga0207641_103788353
111Ga0207675_1004749052
112Ga0209481_101070302
113Ga0207428_102340323
114Ga0207428_104321012
115Ga0310888_106030381
116Ga0310887_101149931
117Ga0310813_104710622
118Ga0307468_1000891012
119Ga0310900_105123282
120Ga0310884_104824441
121Ga0310899_100622041
122Ga0310890_103826411
123Ga0310895_101561713
124Ga0310810_102328482
125Ga0310810_110778611
126Ga0373950_0044065_547_846
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 11.85%    β-sheet: 11.85%    Coil/Unstructured: 76.30%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100MRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRSSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
56.3%43.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Terrestrial Soil
Tropical Forest Soil
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Host-Associated
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Rhizosphere Soil
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
4.8%4.0%5.6%3.2%4.8%5.6%5.6%4.0%3.2%4.8%4.0%5.6%13.5%4.0%4.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPKC_075297002067725004SoilRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRVADEPLDEARLTGGVRVVPRAKADDDSKADRRHGITDRRKHPRTDRRKPQS
ICChiseqgaiiDRAFT_210351923300000033SoilLEYQFGYGVXSXXXRMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIAERRKHPRTDRRQKPS*
INPhiseqgaiiFebDRAFT_10528529023300000364SoilMRVRILRAVAGVLDGQSLGKLTPGLLYELDDAFARQLISMGCAREENSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDVTDRRNGVTDRRKHPRTDRRKRR
INPhiseqgaiiFebDRAFT_10528989913300000364SoilMRVRILRAVAGVLDGQSLGKLTPGLLYELDDAFARQLISMGCAREEHSQAPALVMRAADEPLDEARLTGGVRVVPRAKADDEADRRHG
JGI10214J12806_1073290513300000891SoilRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIADRRKHPRTDRRQKPS*
JGI10220J13317_1030712713300001139SoilMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIADRRKHPRTDRRQK
F14TB_10240655913300001431SoilMRVRILRAVAGVLDGQSLGKLNPGLLYELDDALARQLISMGCAREENSQTPALVMRAADEPLDEARLTGGVRVVPRAKADDDSEPDRRQGAADRRKHPRTDRRKRQS*
soilL1_1007256353300003267Sugarcane Root And Bulk SoilVAGVLDGQSLGQFTPGLLYEVDDALARQLISMGCAREEHSQAPALVKRLADEPLDEARLTGGVRVVPRAQADDDSKADRRHGTADRRKHPRTDRRKPPS*
soilL2_1003862723300003319Sugarcane Root And Bulk SoilMRVRILKAVAGVLDGQSLGRLAPGLVYELDDALARQLMSMGCAREENSKAPALVMRVADEALDEARLTGGVRVVTHETANDESRTDRRLGIADRRKHPRTDRRQKPS*
soilH2_10021138123300003324Sugarcane Root And Bulk SoilVRVRIFRAVAGVLDGQSLGQFTPGLLYEVDDALARQLISMGCAREEHSQAPALVKRLADEPLDEARLTGGVRVVPRAQADDDSKADRRHGTADRRKHPRTDRRKPPS*
soilH2_1003254253300003324Sugarcane Root And Bulk SoilMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLVSMGCAKEENSQAPALVMRITDEPLDEARLTGGVHVFPREIAKDDSQSDRRLGTADRRKHPRTDRRKPRP*
Ga0062593_10009426433300004114SoilMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIADRRKHPRTDRRQKRS*
Ga0062593_10082985313300004114SoilVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF*
Ga0062589_10000267623300004156SoilMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIADRRKHPRTDRRQKPS*
Ga0062589_10078573913300004156SoilVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPPDETRLTGGVRVVPRTEADDDSKADRRQGITDRRKHPRTDRRKPSS*
Ga0062590_10193148813300004157SoilRMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF*
Ga0062595_10063933023300004479SoilMRVRILRAVAGVLDGQSLGKLTPGLLYELDDALARQLMSMGCAKEEDSQAPALVMRTVDDSLDEARLTGGVRVVPREIATDSDRRHGIADRRKHPRTD
Ga0058860_1181633113300004801Host-AssociatedSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0062594_10049112213300005093SoilLRFFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0065704_1008360853300005289Switchgrass RhizosphereMRVRILKAAAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEENSQAPALVMRATDEPFDEGPLTGGVHVVPRDTAKDDSRADRRFGIADRRKHPRTDRRKKPS*
Ga0065704_1009461033300005289Switchgrass RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0065704_1051949023300005289Switchgrass RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS*
Ga0065712_1053140313300005290Miscanthus RhizosphereTNSDIVWTSSRMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF*
Ga0065715_1028219223300005293Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRRKPQS*
Ga0065715_1080510813300005293Miscanthus RhizosphereRSFSAEVFFGVPIRYRGVFSRMRVRILRAVAGVLDGQSLGKLTPGLLYELDDALARQLMSMGCAKEEDSQAPALVMRTVDDSLDEARLTGGVRVVPREIATDSDRRHGIADRRKHPRTDRRKTR*
Ga0070676_1024194623300005328Miscanthus RhizosphereLLRFFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0066388_10503079323300005332Tropical Forest SoilMRVRILKAVAGVLDGQSLGRLVPGLLYELDDGLARQLMSMGCAKEENSHAPALVMRVTDEPLDEALLIGGVRVVPRDTAKDDARPDRRLGIPDRRKHPRTDRRRNRS*
Ga0066388_10783165213300005332Tropical Forest SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVMRVADEPLDEARLTGGVRVVPRTEADDDVNPDRRRGVTDRRKHPRTDRRKPRS*
Ga0070680_10158342213300005336Corn RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRR
Ga0070689_10195830613300005340Switchgrass RhizosphereMAEALFAEVFSKYRFGYRVGLPHEMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDGLARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPREKADDDSEADRRHGITDRRKHPRTDRRK
Ga0070687_10007757013300005343Switchgrass RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKR
Ga0070669_10000563313300005353Switchgrass RhizosphereFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0070688_10134540413300005365Switchgrass RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHP
Ga0070659_10028614723300005366Corn RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF*
Ga0070705_10098219113300005440Corn, Switchgrass And Miscanthus RhizosphereILKAVAGVLDGQSLGKLTPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIADRRKHPRTDRRQKRS*
Ga0070694_10025358223300005444Corn, Switchgrass And Miscanthus RhizosphereMRVRILKAVAGVLDGQSLGKLAPGLLYELDDALARQLMSMGCAKEENSQAPALVMRAAEEPLDEARLTGGVRVVPREIAADDARPDRRLGIADRRKRPRTDRRKPRS*
Ga0070694_10160152913300005444Corn, Switchgrass And Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRR
Ga0070678_10068262313300005456Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDGLARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPREKADDDSEADRRHGITDRRKHPRTDRRKPSP*
Ga0070681_1118087213300005458Corn RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMDCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADR
Ga0070698_10010248853300005471Corn, Switchgrass And Miscanthus RhizosphereKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0070699_10101697923300005518Corn, Switchgrass And Miscanthus RhizosphereMRVRILRAVAGVLDGQSLGKLTPGLLYELDDAFARQLISMGCAKEENSQAPALVMRAADEPLDEARLIGGVRVVPSEIAMDDSRADRRHGITDRRKHPRTDRRKMRS*
Ga0070679_10166251213300005530Corn RhizosphereGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIADRRKHPRTDRRQKRS*
Ga0070686_10196522013300005544Switchgrass RhizosphereVRVRIFRAVAGVLDGQSLGQFTPGLLYELDDALARQLISMGCAREEHSQAPALVKRLTDEPLDEARLTGGVRVVPRAKADDNAALDRRHGTADRRKHPRTDRRKRS*
Ga0070704_10225425923300005549Corn, Switchgrass And Miscanthus RhizosphereLRFFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF*
Ga0070664_10013090413300005564Corn RhizosphereNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0070702_10125392823300005615Corn, Switchgrass And Miscanthus RhizosphereMAEALFAEVFSKYRFGYRVGLPHEMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS*
Ga0068864_10065535323300005618Switchgrass RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTD
Ga0066905_10074467813300005713Tropical Forest SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRAADEPLDEARLTGGVRIVPRPKADDDSKADRRHGLTDRRRHPRTDRRKPSS*
Ga0068870_1001036413300005840Miscanthus RhizosphereRFFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF*
Ga0068863_10076285023300005841Switchgrass RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHTQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS*
Ga0068858_10233266313300005842Switchgrass RhizosphereSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0075417_1014416623300006049Populus RhizosphereMRVRILRAVAGVLDGQSLGKLAPGLLYELDDALARQLISMGCAREENSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKPDRRHGAADRRKHPRTDRRKPRS*
Ga0075422_1026612423300006196Populus RhizosphereTNSDIVWTSSRMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDAFARQLISMGCAREEKSQSPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0097621_10031017613300006237Miscanthus RhizosphereVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRRKPQS*
Ga0097621_10045027523300006237Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLMPGLLYELDDGLARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPREKADDDSEADRRHGITDRRKHPRTDRRKPSP*
Ga0075428_10129601213300006844Populus RhizosphereLKAVAGVLDGQSLGKLAPGLLYELDDALARQLMSMGCAKEENSQAPALVMRAAEEPLDEARLTGGVRVVPREAAADDARPDRRLGTADRRKRPRTDRRKPRS*
Ga0068865_10001534863300006881Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTD
Ga0068865_10188626613300006881Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTD
Ga0075424_10114130123300006904Populus RhizosphereMRVRILKAVAGVLDGRSLGQFTPGLLYELDDALARQLVSMGCAREENSQAPALVKRFTDEPIDETRLTGGVFVVPRDTAKDDSTPDRRFGMADRRKHPRTDRRKPRP*
Ga0079219_1079196523300006954Agricultural SoilVAGVLDGQSLGQFTPGLLYELDDALARQLISMGCAREEHSQAPALVKRLTDEPPDEARLTGGVRVVPRAKADDNAAPDRRHGTADRRKHPRTDRRRRS*
Ga0075419_1005210243300006969Populus RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSQSPALVMRVADEPLDEARLTGGVRVVPRAKADDDRRLGVTDRRKHPRTDRRKPRS*
Ga0111539_1019782523300009094Populus RhizosphereMRVRIFKPVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREESSQAPALVVRVVDEPLDEARLTGGVRVVPRAKADDISKTDRRRGTADRRKHPRTDRRKPRS*
Ga0111539_1031357933300009094Populus RhizosphereMRVRILKAVAGVLDGQSLGKLAPGLLYELDDALARQLMSMGCAKEENSQAPALVMRAAEEPLDEARLTGGVRVVPREAAADDARPDRRLGTADRRKRPRTDRRKPRS*
Ga0111539_1147145323300009094Populus RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDAFARQLISMGCAREEKSQSPALVMRVADEPLDEARLTGGVRVVPRAKADDDRRLGVTDRRKHPRTDRRKPRS*
Ga0111539_1193322323300009094Populus RhizosphereFLLRFFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0111539_1284032823300009094Populus RhizosphereAGVLDGQSLGKLAPGLLYELDDALARQLISMGCAREENSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKPDRRHGAADRRKHPRTDRRKPRS*
Ga0105245_1081258733300009098Miscanthus RhizosphereLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0075418_1000876543300009100Populus RhizosphereMRVRILRAVAGVLDGQSLGKLAPGLLYELDHALARQLISMGCAREENSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKPDRRHGAADRRKHPRTDRRKPRS*
Ga0075418_1010713443300009100Populus RhizosphereMRVRILKAVAGVLDGQSLGKLAPGLLYELDAALARQLMSMGCAKEENSQAPALVMRAAEEPLDEARLTGGVRVVPREAAADDARPDRRLGTADRRKRPRTDRRKPRS*
Ga0114129_1317025813300009147Populus RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSRADRRQGAVDRRKHPRSDRRKTRF*
Ga0111538_1183730723300009156Populus RhizosphereMRVRILRAVAGVLDGQSLGKLAPGLLYELDDALARQLISMGCAREENSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKPDRRHGAAERRKHPRTDRRKPRS*
Ga0126382_1007429833300010047Tropical Forest SoilMRVRILRAVAGVLDGQSLGKLAPGLLYELDDAFARQLISMGCAREENSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKPDRRHGAADRRKRPRTDRRKRQS*
Ga0126372_1214666413300010360Tropical Forest SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSHTPALVVRVADEPLDEARLTGGVRVVPRAKADDDSKADRRHGLTDRRKHPRTDRRKPQS*
Ga0126377_1037633523300010362Tropical Forest SoilMRVRILKAVAGVLDGQSLGRLTPGLLYELDDALARQLMSMGCAKEENSQTPALVMRAGDEPLDDGPLIGGVRVVPRETARDDSRSDRRLGIADRRKHPRTDRRKPRS*
Ga0134124_1056250923300010397Terrestrial SoilVAGVLDGQSLGQFTPGLLYELDDALARQLISMGCAREEHSQAPALVKRLTDEPLDEARLTGGVRVVPRAKADDNAALDRRHGTADRRKHPRTDRRKR
Ga0134121_1195728213300010401Terrestrial SoilMLGQLTPGLVYELDDGLARQLISMGCAIEEHSEALALVVRSGDEAFDEARLTGGVRVIPPGIAHDAPGPDRRRGVPDRRKRSRTDR
Ga0105246_1021148023300011119Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS*
Ga0126375_1021412323300012948Tropical Forest SoilMRVRILKAVAGVLDGQSLGRLVPGLLYELDDALARQLMSMGCAKEEHSQTPALVMRGADEMLDEGPLTGGVRVVPRETAKDDSRPDRRLGISDRRKHPRTDRRKP*
Ga0126375_1066274423300012948Tropical Forest SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDGLARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPRAKADDDSKADRRRGTTDRRKHPRTDRRKPQS*
Ga0164299_1073443613300012958SoilMRVRIFRAVAGVLDGQSLGKLMPGLLYELDDGLARQLISMGCAREEHPQTPALVVRGADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS*
Ga0157372_1165341413300013307Corn RhizosphereVAGVLDGQSRGQFTPGLLYELDDALARQLISMGCAREEHSQAPALVKRLTDEPLDEARLTGGVRVVPRAKADDNAALDRRHGTADRRKHPRTDRRKRS*
Ga0157379_1111904713300014968Switchgrass RhizosphereIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRRKPQS*
Ga0157376_1152586423300014969Miscanthus RhizosphereGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS*
Ga0173478_1034629513300015201SoilMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADR
Ga0132258_1103057413300015371Arabidopsis RhizosphereYQFGYREVASRPMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQTPALVMRAADEALDEGPLTGGVRVVPREIAKDDSRPDRRLGISDRRKHPRTDRRKP*
Ga0132258_1357932533300015371Arabidopsis RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRIADEPLDEARLTGGVRVVPRAKADDDSKADRRRGTTDRRKRPRTDRRKPQS*
Ga0132258_1399709423300015371Arabidopsis RhizosphereMRVRILRAVAGVLDGHSLGKLTPGLLYELDDALARQLMSMGCAKAEDSHAPALVMRAVDDSLDEARLTGGVRVVPREIAKDSDRRHGIADRRKHPRTDRRKTTA*
Ga0132256_10166366823300015372Arabidopsis RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPREKADDDSEADRRHGITDRRKHPRTDRRKPQS*
Ga0132257_10085606313300015373Arabidopsis RhizosphereGVLDGQSLGKLVPGLLYELDDGLARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPREKADDDSEADRRHGITDRRKHPRTDRRKPSP*
Ga0132255_10145480123300015374Arabidopsis RhizosphereMSVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS*
Ga0132255_10591305423300015374Arabidopsis RhizosphereGKLTPGLLYELDDGLARQLISMGCAREEHSRTPALVVRVADEPLDEARLTGGVRVVPRAKADDDSKADRRRGTTDRRKRPRTDRRKPQS*
Ga0173481_1063033813300019356SoilTDSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF
Ga0207697_1006545223300025315Corn, Switchgrass And Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Ga0207682_1014776523300025893Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLMPGLLYELDDGLARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPREKADDDSEADRRHGITDRRKHPRTDRRKPSP
Ga0207643_1024553933300025908Miscanthus RhizosphereFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLR
Ga0207643_1052497423300025908Miscanthus RhizosphereVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRRKPQS
Ga0207660_1015247913300025917Corn RhizosphereVAGVLDGQSLGQFTPGLLYELDDALARQLISMGCAREEHSQAPALVKRLTDEPLDEARLTGGVRVVPRAKADDNAALDRRHGTADRRKHPRTDRRKRS
Ga0207660_1136341413300025917Corn RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Ga0207649_1014763143300025920Corn RhizosphereMRVRIFRAVAGVLDGQSLAKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVADEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF
Ga0207659_10000162173300025926Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRRKPQS
Ga0207659_1008218943300025926Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Ga0207690_1155088923300025932Corn RhizosphereGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDARADRRQGAVDRRKHPRSDRRKTHF
Ga0207704_1037851813300025938Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDSRKRP
Ga0207691_1013234423300025940Miscanthus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRLKPQS
Ga0207711_1031862113300025941Switchgrass RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTNRR
Ga0207679_1025500413300025945Corn RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSHTPALVVRVEDETLDEARLTGGVRVVPREKADDDSEADRRHGITDRRKHPRTDRRKPSP
Ga0207679_1147912013300025945Corn RhizosphereMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEEHSQAPALVMRATDEPLDEARLTGGVHVFAREIAKDDSRRDRRLGIADRRKHPRTDRRQKPS
Ga0207658_1191137813300025986Switchgrass RhizosphereQPGEAAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRIADEPLDEARLTGGVRVVPRGKADDDSKADRRRGTTDRRKRPRTDRRKPQS
Ga0207677_1174907813300026023Miscanthus RhizosphereAKTLTVENTRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Ga0207641_1037883533300026088Switchgrass RhizosphereFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS
Ga0207675_10047490523300026118Switchgrass RhizosphereMRVRILKAVAGVLDGQSLGRLAPGLLYELDDALARQLMSMGCAKEENSQAPALVMRAAEEPLDEARLTGGVRVVPREIAADDARPDRRLGIADRRKRPRTDRRKPRS
Ga0209481_1010703023300027880Populus RhizosphereMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSQSPALVMRVADEPLDEARLTGGVRVVPRAKADDDRRLGVTDRRKHPRTDRRKPRS
Ga0207428_1023403233300027907Populus RhizosphereMRVRILKAVAGVLDGQSLGKLAPGLLYELDDALARQLMSMGCAKEENSQAPALVMRAAEEPLDEARLTGGVRVVPREAAADDARPDRRLGTADRRKRPRTDRRKPRS
Ga0207428_1043210123300027907Populus RhizospherePVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREESSQAPALVVRVVDEPLDEARLTGGVRVVPRAKADDISKTDRRRGTADRRKHPRTDRRKPRS
Ga0310888_1060303813300031538SoilRRFLLRFFRSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS
Ga0310887_1011499313300031547SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS
Ga0310813_1047106223300031716SoilVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRVADEPLDEARLTGGVRVVPRAKADDDSKADRRHGITDRRKHPRTDRRKPQS
Ga0307468_10008910123300031740Hardwood Forest SoilMRVRILKAVAGVLDGQSLGKLAPGLLYELDDALARQLMSMGCAKEENSQAPALVMRAAEEPLDEARLTGGVRVVPRESAADDTRPDRRLGTADRRKRPRTDRRKPRS
Ga0310900_1051232823300031908SoilVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREERSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Ga0310884_1048244413300031944SoilVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHP
Ga0310899_1006220413300032017SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRR
Ga0310890_1038264113300032075SoilSTNSDIVWTSSRMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Ga0310895_1015617133300032122SoilVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEKSHAPALVMRVTDEPLDEARLTGGVRVVPRAKADDDSKGDRRLGVTDRRKHPRTDRRKLRS
Ga0310810_1023284823300033412SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRVADEPLDEARLTGGVRVVPRAKADDDSNVDRRRGTTDRRKRPRTDRRKPQS
Ga0310810_1107786113300033412SoilMRVRIFRAVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSHTPALVVRVADEPLDEARLTGGVRVVPPAKADDDSKADRRHGITDRRKHPRTDRRKPQS
Ga0373950_0044065_547_8463300034818Rhizosphere SoilVAGVLDGQSLGKLTPGLLYELDDALARQLISMGCAREEHSQTPALVVRAADEPLDEARLTGGVRVVPRAKADDDSKADRRQGLTDRRKHPRTDRRKPRS


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.