Metagenome / Metatranscriptome Family F066632

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066632
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	56 residues
Representative Sequence	MNVIDATSVRLVSSPGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA
Number of Associated Samples	103
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.76 %
% of genes near scaffold ends (potentially truncated)	38.10 %
% of genes from short scaffolds (< 2000 bps)	80.95 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.476 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.778 % of family members)
Environment Ontology (ENVO)	Unclassified (31.746 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.825 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF00005	ABC_tran	50.00
PF07452	CHRD	22.22
PF01061	ABC2_membrane	3.17
PF01139	RtcB	1.59
PF00291	PALP	1.59
PF13456	RVT_3	1.59
PF08544	GHMP_kinases_C	0.79
PF08545	ACP_syn_III	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	Translation, ribosomal structure and biogenesis [J]	1.59

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.48 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.48 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.48 %
Unclassified	root	N/A	9.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	47.62 %
Unclassified	root	N/A	9.52 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	47.62 %
Unclassified	root	N/A	9.52 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	37.30 %
Unclassified	root	N/A	9.52 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	32.54 %
Unclassified	root	N/A	9.52 %
Chloroflexi bacterium 13_1_40CM_67_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_67_9	4.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000887\|AL16A1W_10036303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4240	Open in IMG/M
3300002562\|JGI25382J37095_10068484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1327	Open in IMG/M
3300002908\|JGI25382J43887_10200795	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005166\|Ga0066674_10020292	All Organisms → cellular organisms → Bacteria	2863	Open in IMG/M
3300005175\|Ga0066673_10055587	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300005178\|Ga0066688_10026636	All Organisms → cellular organisms → Bacteria	3143	Open in IMG/M
3300005328\|Ga0070676_10578306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	807	Open in IMG/M
3300005406\|Ga0070703_10304827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	665	Open in IMG/M
3300005444\|Ga0070694_100119783	All Organisms → cellular organisms → Bacteria	1887	Open in IMG/M
3300005445\|Ga0070708_100075347	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M
3300005445\|Ga0070708_100090118	All Organisms → cellular organisms → Bacteria	2791	Open in IMG/M
3300005445\|Ga0070708_100146482	All Organisms → cellular organisms → Bacteria	2194	Open in IMG/M
3300005445\|Ga0070708_102144564	Not Available	516	Open in IMG/M
3300005446\|Ga0066686_10252311	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300005447\|Ga0066689_10227607	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300005451\|Ga0066681_10354349	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300005471\|Ga0070698_100590628	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300005518\|Ga0070699_101454059	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300005536\|Ga0070697_100239126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1550	Open in IMG/M
3300005536\|Ga0070697_101402532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	624	Open in IMG/M
3300005555\|Ga0066692_10502440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	772	Open in IMG/M
3300005557\|Ga0066704_10008172	All Organisms → cellular organisms → Bacteria	5616	Open in IMG/M
3300005557\|Ga0066704_10140059	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300005566\|Ga0066693_10103444	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300005575\|Ga0066702_10322741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	941	Open in IMG/M
3300005575\|Ga0066702_10539543	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005586\|Ga0066691_10110861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1550	Open in IMG/M
3300006046\|Ga0066652_100595651	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300006049\|Ga0075417_10014605	All Organisms → cellular organisms → Bacteria	3016	Open in IMG/M
3300006794\|Ga0066658_10367936	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300006800\|Ga0066660_11438814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300006852\|Ga0075433_10040857	All Organisms → cellular organisms → Bacteria	4017	Open in IMG/M
3300006852\|Ga0075433_10461141	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300006854\|Ga0075425_100116963	All Organisms → cellular organisms → Bacteria	3041	Open in IMG/M
3300006854\|Ga0075425_101201628	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300006871\|Ga0075434_101648442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	649	Open in IMG/M
3300007076\|Ga0075435_101671848	Not Available	559	Open in IMG/M
3300009012\|Ga0066710_100185445	All Organisms → cellular organisms → Bacteria	2944	Open in IMG/M
3300009088\|Ga0099830_11350713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	593	Open in IMG/M
3300009137\|Ga0066709_101306298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_67_9	1063	Open in IMG/M
3300009147\|Ga0114129_12312228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	645	Open in IMG/M
3300010301\|Ga0134070_10028097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1852	Open in IMG/M
3300010303\|Ga0134082_10471157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	545	Open in IMG/M
3300010337\|Ga0134062_10243331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	834	Open in IMG/M
3300010371\|Ga0134125_12634566	Not Available	547	Open in IMG/M
3300010375\|Ga0105239_12447175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	608	Open in IMG/M
3300010397\|Ga0134124_13019359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	514	Open in IMG/M
3300010401\|Ga0134121_10068813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2926	Open in IMG/M
3300010403\|Ga0134123_12334221	Not Available	599	Open in IMG/M
3300012096\|Ga0137389_10330423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1294	Open in IMG/M
3300012189\|Ga0137388_10551750	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300012189\|Ga0137388_11424754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	631	Open in IMG/M
3300012198\|Ga0137364_10293014	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300012198\|Ga0137364_10816732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	704	Open in IMG/M
3300012200\|Ga0137382_10689736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	732	Open in IMG/M
3300012203\|Ga0137399_10120180	All Organisms → cellular organisms → Bacteria	2063	Open in IMG/M
3300012203\|Ga0137399_10164079	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300012203\|Ga0137399_10750421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	822	Open in IMG/M
3300012205\|Ga0137362_10894530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	758	Open in IMG/M
3300012206\|Ga0137380_11616717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_67_9	532	Open in IMG/M
3300012208\|Ga0137376_11573071	Not Available	548	Open in IMG/M
3300012211\|Ga0137377_10335102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1449	Open in IMG/M
3300012211\|Ga0137377_10703522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	945	Open in IMG/M
3300012211\|Ga0137377_10754057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	907	Open in IMG/M
3300012285\|Ga0137370_10064385	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
3300012351\|Ga0137386_10577735	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300012361\|Ga0137360_11326774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_67_9	621	Open in IMG/M
3300012363\|Ga0137390_10859625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	863	Open in IMG/M
3300012380\|Ga0134047_1079397	Not Available	683	Open in IMG/M
3300012922\|Ga0137394_10393014	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300012925\|Ga0137419_11805473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_67_9	523	Open in IMG/M
3300012927\|Ga0137416_11210507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	680	Open in IMG/M
3300012929\|Ga0137404_11179650	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300012930\|Ga0137407_11220991	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300012944\|Ga0137410_10303297	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300012958\|Ga0164299_10718209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	701	Open in IMG/M
3300012977\|Ga0134087_10509532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	607	Open in IMG/M
3300015241\|Ga0137418_10134513	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300015241\|Ga0137418_10646759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	822	Open in IMG/M
3300015245\|Ga0137409_10064787	All Organisms → cellular organisms → Bacteria	3429	Open in IMG/M
3300015357\|Ga0134072_10318708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	586	Open in IMG/M
3300018027\|Ga0184605_10156759	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300018054\|Ga0184621_10336431	Not Available	531	Open in IMG/M
3300018061\|Ga0184619_10454398	Not Available	571	Open in IMG/M
3300018482\|Ga0066669_10201312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1525	Open in IMG/M
3300018482\|Ga0066669_10737180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	869	Open in IMG/M
3300019255\|Ga0184643_1383046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	536	Open in IMG/M
3300019279\|Ga0184642_1170079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	619	Open in IMG/M
3300019875\|Ga0193701_1059397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	765	Open in IMG/M
3300020004\|Ga0193755_1105715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	888	Open in IMG/M
3300020022\|Ga0193733_1100469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	807	Open in IMG/M
3300021080\|Ga0210382_10007540	All Organisms → cellular organisms → Bacteria	3599	Open in IMG/M
3300021080\|Ga0210382_10061086	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300022534\|Ga0224452_1004895	All Organisms → cellular organisms → Bacteria	3246	Open in IMG/M
3300025885\|Ga0207653_10018514	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300025922\|Ga0207646_10714256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	896	Open in IMG/M
3300025939\|Ga0207665_11601514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	516	Open in IMG/M
3300026297\|Ga0209237_1085119	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300026297\|Ga0209237_1092294	All Organisms → cellular organisms → Bacteria → Acidobacteria	1353	Open in IMG/M
3300026300\|Ga0209027_1074307	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300026301\|Ga0209238_1102769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_67_9	967	Open in IMG/M
3300026310\|Ga0209239_1150499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	925	Open in IMG/M
3300026318\|Ga0209471_1001100	All Organisms → cellular organisms → Bacteria	16483	Open in IMG/M
3300026529\|Ga0209806_1184672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	749	Open in IMG/M
3300026532\|Ga0209160_1178042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	895	Open in IMG/M
3300027846\|Ga0209180_10670091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	567	Open in IMG/M
3300027873\|Ga0209814_10212200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	837	Open in IMG/M
3300027875\|Ga0209283_10937484	Not Available	521	Open in IMG/M
3300027903\|Ga0209488_11228920	Not Available	503	Open in IMG/M
3300028536\|Ga0137415_10084225	All Organisms → cellular organisms → Bacteria	3037	Open in IMG/M
3300028536\|Ga0137415_10174201	All Organisms → cellular organisms → Bacteria	1979	Open in IMG/M
3300028536\|Ga0137415_10211316	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300028716\|Ga0307311_10103509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	797	Open in IMG/M
3300028796\|Ga0307287_10122641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	984	Open in IMG/M
3300028819\|Ga0307296_10025961	All Organisms → cellular organisms → Bacteria	3092	Open in IMG/M
3300028828\|Ga0307312_10852818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	604	Open in IMG/M
3300028881\|Ga0307277_10094156	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300028881\|Ga0307277_10105815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_40CM_67_9	1196	Open in IMG/M
3300028884\|Ga0307308_10002764	All Organisms → cellular organisms → Bacteria	7297	Open in IMG/M
3300028884\|Ga0307308_10617265	Not Available	520	Open in IMG/M
3300028885\|Ga0307304_10421064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	605	Open in IMG/M
3300031092\|Ga0308204_10193688	Not Available	630	Open in IMG/M
3300031720\|Ga0307469_10049814	All Organisms → cellular organisms → Bacteria	2622	Open in IMG/M
3300031720\|Ga0307469_10427641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1139	Open in IMG/M
3300031820\|Ga0307473_10131408	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300032205\|Ga0307472_100547951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1009	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.27%
Host-Associated	Host-Associated	8.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.92%
Plants	Host-Associated → Plants	8.73%
Aquatic	Environmental → Aquatic	6.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.73%
Freshwater	Environmental → Aquatic → Freshwater	3.17%
Sediment	Environmental → Aquatic → Sediment	3.17%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.81%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	46.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	23.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.17%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.32%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.76%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.17%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.38%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012380	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL16A1W_100363036	3300000887	Permafrost	VAVVIDVASVRLISSLGHADGGDFTKGSGAVLSFIRNRTGSGALAGRRRSLPTYRMA*
JGI25382J37095_100684842	3300002562	Grasslands Soil	MTPVIDAASVRLLSSLGHVERVDFTEGSGAVLSLVRNRTGSGALAGRRRSLPTYGMA*
JGI25382J43887_102007953	3300002908	Grasslands Soil	MPLVIDATSVRLVSSRVDFMKGSGAVLSFNRNRTGSGPLAGRRRSLPTYGMA*
Ga0066674_100202923	3300005166	Soil	VAFVIDATSVRLVSSHRHAAGVDITKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA*
Ga0066673_100555873	3300005175	Soil	MAEVIDATSVRLVSSLGYADGVDITKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0066688_100266364	3300005178	Soil	VVIDAASVRLLSSPGHAEGVDFTEGSGAVLSLVRNRTGYGALAGRRRSLPTYGMA*
Ga0070676_105783061	3300005328	Miscanthus Rhizosphere	VIDATSVRLVSSPSRADGADFTEGSGAVLSFIRNRTGSGALAGRRRSLPTYRMA*
Ga0070703_103048271	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VTFVIDATSVRLVSCLRHADGVDFTEGSGAVLSFMPNRTGSGALAGRRRSLPTYRMA*
Ga0070694_1001197831	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VTKVIDATSVRLVSSPSRADGADFTEGSGAVLSFIRNRTGSGALVGRRRSLPTYRMA*
Ga0070708_1000753473	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAVVIDAASVRLLSSPGHAERVDITKGSGAVLSFVPNRTGSGAVAGRRRSLPTYRMA*
Ga0070708_1000901181	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTYVIDATSVRLVSSLRHADGVDFTEGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0070708_1001464823	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTPVIDAASVRLLSSLRHAERVDIPKGSGAVLSFVPNRTGSGALAGRRRSLPTNRMA*
Ga0070708_1021445641	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTFVIDATSVRLVSSLRHADGVDFTEGSGAVLSFMPNRTGSGALAGRRRSLPTYRMA*
Ga0066686_102523113	3300005446	Soil	MTAVIDAASVRLLSSHGHAERVDFMRGSGAVLSFIRNRTGSGALAGRRRSLPTYRMA*
Ga0066689_102276072	3300005447	Soil	GVRGAEAPSTLVSSPGHAERVDFTKGSGAVLSFVRNRTGSGPLAGPRRSLPTHGMA*
Ga0066681_103543492	3300005451	Soil	MTVIDAASVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA*
Ga0070698_1005906283	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAVIIDAASVRLLSSPSHAERVDITKGSGAVLSFVPNRTGSGAIAGRRRSLPTYRMA*
Ga0070699_1014540592	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAVVIDAASVRLLSSPSHAERVDITKGSGAVLSFVPNRTGSGAIAGRRRSLPTYRMA*
Ga0070697_1002391261	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTPVIDAASVRLLSSLRHAERVDIPKGSGAVLSFVPSRTGSGALAGRRRSLPTNRMA*
Ga0070697_1014025321	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VIDAASVRLLSSPSHAERVDITKGSGAVLSFVPNRTGSGAIAGRRRSLPTYRMA*
Ga0066692_105024402	3300005555	Soil	GAHARRRMTPVIDAASVRLLSSLGHVERVDFTEGSGAVLSLVRNRTGSGALAGRRRSLPTYGMA*
Ga0066704_100081729	3300005557	Soil	MVIDAASVRLLSSPGHAEGVDFTEGSGAVLSLVRNRTGYGALAGRRRSLPTYGMA*
Ga0066704_101400593	3300005557	Soil	LISSPGHVDGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0066693_101034443	3300005566	Soil	VTEVIDATSVRLVSSPGYADGVDFTKGSGAVLSFYRNRTGSGPLAGRRRSLPTYRMA*
Ga0066702_103227411	3300005575	Soil	AEVIDATSVRLVSSLGHADGVDITKGSGAVLSFIRNRTGSGPLAGPRRSLPTYRMA*
Ga0066702_105395431	3300005575	Soil	MVIDAASVRLVSSHRHAAGVDFTKGSGAVLSFVPNRTGSGALAGRRRSLPTY
Ga0066691_101108611	3300005586	Soil	VAFVIDATSVRLVSSHRHAAGVDITKGSGAVLSFIPNRTVPGALAGRRR
Ga0066652_1005956513	3300006046	Soil	VAEVIDATSVRLVSSPGHADGVDFTKGSGAVLSFYRNRTGSGPLAGRRRSLPTYRMA*
Ga0075417_100146054	3300006049	Populus Rhizosphere	MTRVIDATSVRLLSSNRHANRVDIPKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA*
Ga0066658_103679361	3300006794	Soil	MVIDAASVRLLSSPGHAEGVDFTEGSGAVLSLVRNRTGYGALA
Ga0066660_114388141	3300006800	Soil	SLGQAHAHARRRCQSVIDATSVRLLSSHRHAAGVDFTKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA*
Ga0075433_100408575	3300006852	Populus Rhizosphere	VTFLIDATSVRLVSSLRHADGVDFTEGSGAVLSFTPNRTGSGALAGRRRSLPTYRMA*
Ga0075433_104611412	3300006852	Populus Rhizosphere	VTPVIDAASVRLLSSLRHADRVDIPKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA*
Ga0075425_1001169633	3300006854	Populus Rhizosphere	VTSVIDAASVRLLSSPRHADRVDIPKGSGAVLSFVPNRTGSGALAGRRRSLPTNRMA*
Ga0075425_1012016283	3300006854	Populus Rhizosphere	VTFVIDATSVRLVSSLRHADGVDFTEGSGAVLSFTPNRTGSGALVGRRRSLPTYRMA*
Ga0075434_1016484422	3300006871	Populus Rhizosphere	VTFVIDATSVRLVSSLRHADGVDFTEGSGAVLSFTPNRTGSGALAGRRRSLPTYRMA*
Ga0075435_1016718481	3300007076	Populus Rhizosphere	VTSVIDAASVRLLSSPRHADRVDIPKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA*
Ga0066710_1001854451	3300009012	Grasslands Soil	LVARMTAVIDAASVRLLSSHGHAERVDFMRGSGAVLSFIRNRTGSGALAGRRRSLPTYRM
Ga0099830_113507133	3300009088	Vadose Zone Soil	VTYVIDATSVRLVSSLGHADGVDFTEGSGAVLSFIRNRTGSGALAGRRRSLPTYR
Ga0066709_1013062981	3300009137	Grasslands Soil	TEVIDATSVRLISSPGHVDGVDFTKGSGAVLSFIRNRTGSGALAGPRRSLPTYRMA*
Ga0114129_123122281	3300009147	Populus Rhizosphere	TEAQPNARARRKVTSVIDAASVRLLSSPRHADRVDIPKGSGAVLSFVPNRTGSGPLAGRRRSLPTNRMA*
Ga0134070_100280971	3300010301	Grasslands Soil	ATSVRLVSSHRHAAGVDITKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA*
Ga0134082_104711572	3300010303	Grasslands Soil	LSNRSARARSSWVAFVIDATSVRLVSSHRHAAGVDITKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA*
Ga0134062_102433312	3300010337	Grasslands Soil	RWMAEVIDATSVRLVSSLGYADGVDITKGSGAVLSFIRNRTGSGPLAGPRRSLPTYRMA*
Ga0134125_126345662	3300010371	Terrestrial Soil	VTKVIDATSVRLVSSPSRVDGADFTEGSGAVLSFIRNRTGSGALVGRRRSLPTYRMA*
Ga0105239_124471752	3300010375	Corn Rhizosphere	HLWSQGRALRHIELSAHARRSVTKVIDATSVRLVSSPSRADGADFTEGSGAVLSYIRNRTGSGALAGRRRSLPTYRMA*
Ga0134124_130193591	3300010397	Terrestrial Soil	KIIDATSVRLVSSPSRADGADFTEGSGAVLSFIRNRTGSGALVGRRRSLPTYRMA*
Ga0134121_100688136	3300010401	Terrestrial Soil	VTKVIDATSVRLVSSPSRADGADFTEGSGAVLSFIRNRTGSGALVGRRRSLPTYRMV*
Ga0134123_123342211	3300010403	Terrestrial Soil	VTKIIDATSVRLVSSPSRADGADFTEGSGAVLSFIRNRTGSGALAGRRRSLPTYRMA*
Ga0137389_103304233	3300012096	Vadose Zone Soil	VTYVIDATSVRLVSSLGHADGVDFTEGSGAVLSFIRNRTGSGALAGRRRSLPTYRMA*
Ga0137388_105517502	3300012189	Vadose Zone Soil	VTYVIDATSVRLVSSLGHADGVDFTEGSGAVLSFIRNRIGSGALAGRRRSLPTYRMA*
Ga0137388_114247541	3300012189	Vadose Zone Soil	LVSSLGHADGVDFTEGSGAVLSFIRNRTGSGALAGPRRSLPTYRMA*
Ga0137364_102930143	3300012198	Vadose Zone Soil	MNVIDAASVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA*
Ga0137364_108167322	3300012198	Vadose Zone Soil	MAEVIDATSVRLVSSLGHADGVDITKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0137382_106897363	3300012200	Vadose Zone Soil	VAFVIDATSVRLVSSHRHAAGVDITKGSGAVLSFIPNRIVPGALAGRRRSLPTYRMA*
Ga0137399_101201803	3300012203	Vadose Zone Soil	MNVIDATSVRLVSSPGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA*
Ga0137399_101640792	3300012203	Vadose Zone Soil	MTAVIDAASVRLLSSPGYAERVDFTEGSGAVLSFMPNRTGSGALAGRRRSLPTYGMA*
Ga0137399_107504212	3300012203	Vadose Zone Soil	MTQVIDAASVRLLSSLGHAGRVDFTEGSGAVLSLVRNRTGSGALAGRRRSLPTYGMA*
Ga0137362_108945303	3300012205	Vadose Zone Soil	MAQVIDVTSVRLISSVGRADGADFTKGSGAVLSFNRNRTGSGPLAGRRRSLPTYRMA*
Ga0137380_116167172	3300012206	Vadose Zone Soil	MAQVIDVTSVRLVSSLGRADGADFTKGSGAVLSFIRNRSGSGPLAGRRRSLPTYRMA*
Ga0137376_115730713	3300012208	Vadose Zone Soil	MAEVIDATSVRLVSSLGHADGVDITKGSGAVMSFIRNRTGSGPL
Ga0137377_103351023	3300012211	Vadose Zone Soil	MAQVIDVTSVRLISSFGRADGADFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0137377_107035221	3300012211	Vadose Zone Soil	VAFVIDATSVRLVSSHRHAAGVDIMKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA*
Ga0137377_107540572	3300012211	Vadose Zone Soil	REVIDATSVRLISSPGHVDGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0137370_100643854	3300012285	Vadose Zone Soil	MAEVIDAASVRLVSSLGHADGVDITKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0137386_105777352	3300012351	Vadose Zone Soil	MAQVIDVTSVRLVSSLGRVDDADFTKGSGAVLSFIGNRTGSGPLAGRRRSLPTYRMV*
Ga0137360_113267742	3300012361	Vadose Zone Soil	MAQVIDVTSVRLISSIGRADGADFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0137390_108596252	3300012363	Vadose Zone Soil	ARSSPMAVVIDAASVRLLSSHSHAECVDITKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA*
Ga0134047_10793972	3300012380	Grasslands Soil	MNVIDAASVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGALAGRRRSLPTYRMA*
Ga0137394_103930141	3300012922	Vadose Zone Soil	MNVIDAMSVRLVSSPGHAAGVDFTEGSGAVLSFIRNRTGSGPLAGRRRSLPT
Ga0137419_118054732	3300012925	Vadose Zone Soil	MVIDATSVRLVSSHRHADGVDFKKGSGAVLSFVPNRTGSGPLAGRRRSLPTYRMA*
Ga0137416_112105071	3300012927	Vadose Zone Soil	VTQVIDATSVRLVSSLGHADGVDFTKGSGAVLSFIPNRTGSGPLAGRRRS
Ga0137404_111796502	3300012929	Vadose Zone Soil	MNLIDATSVRLISSLGHAEGVDFTEGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA*
Ga0137407_112209912	3300012930	Vadose Zone Soil	MNVIDATSVRLVSSPGHAEGVDFTEGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA*
Ga0137410_103032973	3300012944	Vadose Zone Soil	MNVIDATSVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGSLAGRRRSLPTYGMA*
Ga0164299_107182092	3300012958	Soil	VTKIIDATSVRLVSSPSRADGADFTEGSGAVLSFIRNRTGSGALVGRRRSLPTYRMA*
Ga0134087_105095322	3300012977	Grasslands Soil	VRLVSSHRHAAGVDITKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA*
Ga0137418_101345134	3300015241	Vadose Zone Soil	MNVIDATSVRLVSSPGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA*
Ga0137418_106467592	3300015241	Vadose Zone Soil	QIIDAASVRLVSSHRHADGVDFKKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA*
Ga0137409_100647873	3300015245	Vadose Zone Soil	MNVIDATSVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA*
Ga0134072_103187081	3300015357	Grasslands Soil	SVRLVSSHRHAAGVDITKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA*
Ga0184605_101567593	3300018027	Groundwater Sediment	MNVIDATSVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA
Ga0184621_103364311	3300018054	Groundwater Sediment	MNVIDATSVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPT
Ga0184619_104543982	3300018061	Groundwater Sediment	MTVIDATSVRLVSSLGHADRVDFTKGSGAVLSFIRNRTGSGPLAGPRRSLPTYGMA
Ga0066669_102013123	3300018482	Grasslands Soil	MAEVIDATSVRLVSSLGYADGVDITKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA
Ga0066669_107371801	3300018482	Grasslands Soil	MDATSVRLVSSPGHADGVDFTKGSGAVLSFYRNRTGSGPLAGRRRSLPTYRMA
Ga0184643_13830462	3300019255	Groundwater Sediment	MTQVIDAASVRLISSPGHADRVDFTEGSGAVLSFMRNRTGSGPLAGRRRSLPTYGMA
Ga0184642_11700792	3300019279	Groundwater Sediment	MEVIDAASVRLISSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA
Ga0193701_10593972	3300019875	Soil	MAEVIDATSVRLVSSLGHADGVDFTKGSGAVLSLIRNRTGSGPLAGRRRSLPTYRMA
Ga0193755_11057151	3300020004	Soil	SVRLVSSPGHVRRVDFTKGSGAVLSFIRNRTGSGALVGRRRSLPTYRMA
Ga0193733_11004693	3300020022	Soil	MAEVIDAMSVRLVSSLGHADGVDFTKGSGAVLSLIRNRTGSGPLAGRRRSLPTYRMA
Ga0210382_100075406	3300021080	Groundwater Sediment	MNVIDATSVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSG
Ga0210382_100610863	3300021080	Groundwater Sediment	DATSVRLVSSLGHADRVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA
Ga0224452_10048952	3300022534	Groundwater Sediment	MNVIDATSVRLVSSLGHADGLDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA
Ga0207653_100185143	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VTFVIDATSVRLVSSLRHADGVDFTEGSGAVLSFMPNRTGSGALAGRRRSLPTYRMA
Ga0207646_107142563	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAVVIDAASVRLLSSPSHAERVDITKGSGAVLSFVPNRTGSGAIAGRRRSLPTYRMA
Ga0207665_116015141	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	WQTAASVRLVSSRVDFMKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA
Ga0209237_10851191	3300026297	Grasslands Soil	MPLVIDAASVRLVSSLTVTHIRMDSSKGSGAVLSFNRNRTGSGPLAGRRRSLPTYRMA
Ga0209237_10922941	3300026297	Grasslands Soil	VAFVIDATSVRLVSSHRHAAGVDITKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA
Ga0209027_10743073	3300026300	Grasslands Soil	VTEVIDATSVRLVSSHRHAARVDIMKGSGAVLSFIRNRTGSGPLAGLRRSLPTYRMA
Ga0209238_11027691	3300026301	Grasslands Soil	RLLSSPGHAEGVDFTEGSGAVLSLVRNRTGYGALAGRRRSLPTYGMA
Ga0209239_11504992	3300026310	Grasslands Soil	MNVIDAASVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA
Ga0209471_100110012	3300026318	Soil	MVIDAASVRLVSSQRHAAGVDFTKGSGAVLSFVPNRTGSGALAGRRRSLPTYGMA
Ga0209806_11846722	3300026529	Soil	QAHAHARRRCQSVIDATSVRLLSSHRHAECVDFTKGSGAVLSFIPNRTVPGALAGRRRSLPTYRMA
Ga0209160_11780422	3300026532	Soil	PTEVIDATSVRLISSPGHVDGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA
Ga0209180_106700911	3300027846	Vadose Zone Soil	DATSVRLVSSLRHADGVDFTEGSGAVLSFMPNRTGSGALAGRRRSLPTYRMA
Ga0209814_102122002	3300027873	Populus Rhizosphere	MTRVIDATSVRLLSSNRHANRVDIPKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA
Ga0209283_109374842	3300027875	Vadose Zone Soil	MAVVIDAASVRLLSSHSHAECVDITKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA
Ga0209488_112289202	3300027903	Vadose Zone Soil	VAEVIDATSVRLVSSPGHADGVDITKGSGAVLSFVRNRTGSGPLAGRRRSLPTYRMA
Ga0137415_100842254	3300028536	Vadose Zone Soil	MNVIDATSVRLVSSPGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA
Ga0137415_101742013	3300028536	Vadose Zone Soil	MPLVIDATSVRLVSSRVDFMKGSGAVLSFNRNRTGSGPLAGRRRSLPTYGMA
Ga0137415_102113162	3300028536	Vadose Zone Soil	MVIDATSVRLVSSQRHAEGVDFTKGSGAVLSFVPNRTGSGALAGRRRSLPTYRMA
Ga0307311_101035092	3300028716	Soil	TAVIDAASVRLISSPGHADRVDFTKGSGAVLSFMRNRTGSGPLAGRRRSLPTYRMA
Ga0307287_101226412	3300028796	Soil	MNVIDATSVRLVSSLGHADGLDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTDGMA
Ga0307296_100259616	3300028819	Soil	MNVIDATSVRLVSSLGHADGLDFTKGSGAVLSFIRNRTGSGPLAGRRR
Ga0307312_108528182	3300028828	Soil	ARRSMNVIDATSVRLVSSLGHADGVDFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYGMA
Ga0307277_100941561	3300028881	Soil	MPVIDAASVRLVSSVGHADGVDFTKGSGAVLSLIRNRTGSGPLAGRRRSLPTYGMA
Ga0307277_101058152	3300028881	Soil	MAEVIDAASVRLISSLGHAVGVDFTKGSGAVLSFVRNRTGSGPLAGPRRSLPTYRMA
Ga0307308_1000276412	3300028884	Soil	MAEVIDATSVRLVSSPGHADGVDFTKGSGAVLSLIRNRTGSGPLAGRRRSLPTYRMA
Ga0307308_106172652	3300028884	Soil	MTWLIDAASVRLLSSPGHTERVDLMKGSGAVLSFIRNRTGSGAPAGRRRSLPTYGMA
Ga0307304_104210641	3300028885	Soil	TGVIDAASVRLISSPSHADRVDFTEGSGAVLSFMRNRTGSGPIAGRRRSLPTYRMA
Ga0308204_101936881	3300031092	Soil	MTQVIDAASVRLVSSLGHADGVDFTKGSGAVLSLIRNRTGSGPLAGRRRSLPTYWMA
Ga0307469_100498144	3300031720	Hardwood Forest Soil	RRSVIDAASVRLVSSRVHFMKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA
Ga0307469_104276412	3300031720	Hardwood Forest Soil	MAQVIDVTSVRLISSVGRADGADFTKGSGAVLSFIRNRTGSGPLAGRRRSLPTYRMA
Ga0307473_101314081	3300031820	Hardwood Forest Soil	MAQVIDVTSVRLISSVGRADGADFTKGSGAVLSFIPNRTGSGPLAGRRRSLPTYRMA
Ga0307472_1005479512	3300032205	Hardwood Forest Soil	MAQVIDVTSVRLISSLGRADGADFTKGSGAVLSFIPNRTGSGPLAGRRRSLPTYRMA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066632

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences