Basic Information | |
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Family ID | F066353 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 126 |
Average Sequence Length | 48 residues |
Representative Sequence | ALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTVPD |
Number of Associated Samples | 82 |
Number of Associated Scaffolds | 126 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 90.48 % |
Associated GOLD sequencing projects | 76 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (61.111 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (70.635 % of family members) |
Environment Ontology (ENVO) | Unclassified (84.921 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (70.635 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 64.44% Coil/Unstructured: 35.56% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Tropical Forest Soil Soil Soil Tropical Forest Soil Tropical Rainforest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0008092_112210951 | 3300004629 | Tropical Rainforest Soil | VPGSVQVTDSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD* |
Ga0066388_1008548881 | 3300005332 | Tropical Forest Soil | ALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTVPD* |
Ga0066388_1087895011 | 3300005332 | Tropical Forest Soil | MVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPG* |
Ga0066903_1024276431 | 3300005764 | Tropical Forest Soil | GDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTVPD* |
Ga0066903_1029947991 | 3300005764 | Tropical Forest Soil | MVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD* |
Ga0066903_1043335132 | 3300005764 | Tropical Forest Soil | TPVDGPPFGKLTIHNARLYRFDENDKLAAEQVIFYTVPG* |
Ga0126374_111955131 | 3300009792 | Tropical Forest Soil | DGPPFGKLTIHNARLYRFDDNDKIAAEQVTFYTTPD* |
Ga0126382_101260321 | 3300010047 | Tropical Forest Soil | TKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTVPD* |
Ga0126382_109405282 | 3300010047 | Tropical Forest Soil | LMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD* |
Ga0126373_107577402 | 3300010048 | Tropical Forest Soil | ALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYAVPD* |
Ga0126373_121498081 | 3300010048 | Tropical Forest Soil | GPPYGKLTIHNARLYRFDEDDKIAAEQVIFCTVPD* |
Ga0126373_127594042 | 3300010048 | Tropical Forest Soil | YALLMVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPG* |
Ga0126377_104388821 | 3300010362 | Tropical Forest Soil | SAGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD* |
Ga0126375_105458441 | 3300012948 | Tropical Forest Soil | GDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPD* |
Ga0126369_101700861 | 3300012971 | Tropical Forest Soil | DGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTVPD* |
Ga0126369_111734011 | 3300012971 | Tropical Forest Soil | VTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD* |
Ga0182036_101742212 | 3300016270 | Soil | RVTDSTGDESCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0182041_101937833 | 3300016294 | Soil | GSVRVTDSAGDGRYALLMVTTEVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYTAPN |
Ga0182033_106907682 | 3300016319 | Soil | DGQYALLMLTTKVDGPPYGKLTIHSARMYRFDEDDKIAAEQVIFYTVPD |
Ga0182033_107834071 | 3300016319 | Soil | DDNYALLMVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPAS |
Ga0182033_110021192 | 3300016319 | Soil | DGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0182032_104659561 | 3300016357 | Soil | SNGDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPAS |
Ga0182040_100454243 | 3300016387 | Soil | GSVEVTDSAGDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0182039_100893654 | 3300016422 | Soil | KVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0182039_106748112 | 3300016422 | Soil | LMVTTKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTAPG |
Ga0126371_103906931 | 3300021560 | Tropical Forest Soil | GDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDENDKLAAEQVIFYTVPG |
Ga0126371_115335551 | 3300021560 | Tropical Forest Soil | TPVDGPPFGKLTIHNARLYRFDENDKIAAEQVVFYTVPG |
Ga0126371_121241371 | 3300021560 | Tropical Forest Soil | LLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318516_101142581 | 3300031543 | Soil | LLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0318516_102481121 | 3300031543 | Soil | VDGPPYGNLTIHNARLYRFDEHDKIAAEQVIFYTTPG |
Ga0318516_107728862 | 3300031543 | Soil | PGSVRVTDSAGDGRYALLMVTTKVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYTAPS |
Ga0318534_102989081 | 3300031544 | Soil | TKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318541_101264543 | 3300031545 | Soil | DSAGDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDRIAAEQVIFCTVPD |
Ga0318571_102727881 | 3300031549 | Soil | ALLMVITKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318571_103653892 | 3300031549 | Soil | YALLMVTTKVDGPPFGKLTIHNARLYRFDDNDRIAAEQVIFCTVPD |
Ga0318571_104005552 | 3300031549 | Soil | DDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFCTTPD |
Ga0318528_107463721 | 3300031561 | Soil | VQVTDCAGDDRYALLMVTTKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTAPG |
Ga0318573_105668652 | 3300031564 | Soil | DSAGDDRYALLMVTTEVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYTAPN |
Ga0318555_107451982 | 3300031640 | Soil | DSCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318572_100596333 | 3300031681 | Soil | DSSGDDQYALLMVTTKVDGPPYGNLTIHNARLYRFDEHDKIAAEQVIFYTTPG |
Ga0318560_103512402 | 3300031682 | Soil | DSAGDDRYALLMVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318496_101243381 | 3300031713 | Soil | VQVTDSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318496_106349982 | 3300031713 | Soil | VRVTDSSGDDQYALLMVTTKVDGPPYGNLTIHNARLYRFDEHDKIAAEQVIFYTTPG |
Ga0306917_103990061 | 3300031719 | Soil | KVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318493_100103505 | 3300031723 | Soil | DSCALLMVTTPVDGPPFGKLTIHNARLYRFDEDDRLAAEQVIFYTTPD |
Ga0318493_105085231 | 3300031723 | Soil | VRVTDSNGDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDENDKLAAEQVIFYTAPG |
Ga0318500_104363771 | 3300031724 | Soil | SAGDDQYALLMVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318501_101631861 | 3300031736 | Soil | LMVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318501_105574082 | 3300031736 | Soil | TDSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0306918_105893871 | 3300031744 | Soil | SCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318492_100300411 | 3300031748 | Soil | GDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318494_107266802 | 3300031751 | Soil | TDSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNGKIAAEQVIFYTTPD |
Ga0318494_107314622 | 3300031751 | Soil | AGDDRYALLMVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318554_102823151 | 3300031765 | Soil | EVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYTAPN |
Ga0318546_105828311 | 3300031771 | Soil | DTAGDDRYALLMVTTKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTVPD |
Ga0318498_100158665 | 3300031778 | Soil | VDGPPYGKLTIHNARLYRFDDNDKIAAEQIIFYTVPD |
Ga0318508_11444892 | 3300031780 | Soil | DQYALLMVTTKVDGPPYGKLTIHNARLYRFDEDDKIAAEQVVFYVGQE |
Ga0318508_11920842 | 3300031780 | Soil | LLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318547_101165323 | 3300031781 | Soil | VTDSAGDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDRIAAEQVIFCTVPD |
Ga0318547_108155562 | 3300031781 | Soil | NYALLMVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPG |
Ga0318547_108498682 | 3300031781 | Soil | VTDSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318552_102057431 | 3300031782 | Soil | MVSTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318552_105215752 | 3300031782 | Soil | YALLMVTTEVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYIAPN |
Ga0318552_106760422 | 3300031782 | Soil | TWPGSVEVTDSAGDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDRIAAEQVIFCTVPD |
Ga0318548_101850533 | 3300031793 | Soil | PGTVQVTDSNGDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPA |
Ga0318548_102761443 | 3300031793 | Soil | VTDSTGDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318548_103337521 | 3300031793 | Soil | GDDQYALLMVTTKVDGPPYGNLTIHNARLYRFDEHDKIAAEQVIFYTTPG |
Ga0318548_103979322 | 3300031793 | Soil | ALLMVTTKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTVPD |
Ga0318550_100183626 | 3300031797 | Soil | AGDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0318550_105594852 | 3300031797 | Soil | MVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318523_105243981 | 3300031798 | Soil | TDSAGDDQYALLMVTTKVDGPPYGKLTIHNARLYRFDEDDKIAAEQVVFYVGQE |
Ga0318497_106483461 | 3300031805 | Soil | VDGPPFGKLTIHNARLYRFDENDKLAAEQVIFYTAPG |
Ga0318568_104452612 | 3300031819 | Soil | TDSAGDDRYALLMVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318568_107865901 | 3300031819 | Soil | MVTTPVDGPPFGKLTIHNARLYRFDENDKLAAEQVIFYTAPG |
Ga0318567_104426812 | 3300031821 | Soil | PGTVQVTDSNGDDQYALLMVTTPVDGPPFGKLTIHNARLYRFDENDKLAAEQVIFYTVPA |
Ga0318567_106644842 | 3300031821 | Soil | ALLMVTTEVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYIAPN |
Ga0318564_102835982 | 3300031831 | Soil | QVTDCAGDDRYALLMVITKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318499_100264625 | 3300031832 | Soil | PVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPAS |
Ga0310917_106859132 | 3300031833 | Soil | STGDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318511_104737961 | 3300031845 | Soil | MVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318512_105856882 | 3300031846 | Soil | ALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0318512_106538171 | 3300031846 | Soil | VRVTDSTGDESCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318527_104682032 | 3300031859 | Soil | VTDSAGDDRYALLMVTTAVDGPPFGKLTIRNARLYRFDDNDKIAAEQVIFYTAPN |
Ga0306925_115402691 | 3300031890 | Soil | YALLMVTTKVDGPPFGKLTIHNARLYRFDDNGKIAAEQVIFYTTPD |
Ga0318536_102750702 | 3300031893 | Soil | STGDESCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318522_103745792 | 3300031894 | Soil | LMVSTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318520_107819272 | 3300031897 | Soil | DGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYIAPN |
Ga0306923_104515911 | 3300031910 | Soil | DCAGDDRYALLMVITKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTAPG |
Ga0306921_113229071 | 3300031912 | Soil | YALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFCTTPD |
Ga0310912_108806102 | 3300031941 | Soil | GDDQYALLMVTTKVDGPPYGKLTIHNARLYRFDEDDKIAAEQVVFYVGQE |
Ga0310916_100217321 | 3300031942 | Soil | VTDSAGDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0306926_105341362 | 3300031954 | Soil | GPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0306926_129335742 | 3300031954 | Soil | GPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTVPD |
Ga0318530_103595201 | 3300031959 | Soil | LMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQIIFYTVPD |
Ga0318530_104100651 | 3300031959 | Soil | LMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318562_105286032 | 3300032008 | Soil | ALLMVTTKVDGPPYGKLTIHNARLYRFDEDDKIAAEQVVFYVGQE |
Ga0318563_100245061 | 3300032009 | Soil | SSGDDQYALLMVTTKVDGPPYGNLTIHNARLYRFDEHDKIAAEQVIFYTTPG |
Ga0318569_100551283 | 3300032010 | Soil | VDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYTAPS |
Ga0318507_104292611 | 3300032025 | Soil | IVPGSVRVTDSSGDDQYALLMVTTKVDGPPYGNLTIHNARLYRFDEHDKIAAEQVIFYTTPG |
Ga0318545_102189742 | 3300032042 | Soil | YALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0318558_103762402 | 3300032044 | Soil | ALLMVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTTPD |
Ga0318532_102817852 | 3300032051 | Soil | DSNGDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDENDKIAAEQVIFYTVPAS |
Ga0318532_103195192 | 3300032051 | Soil | DSAGDDRYALFMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQIIFYTVPD |
Ga0318506_103528223 | 3300032052 | Soil | DSTGDDSCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318570_102344212 | 3300032054 | Soil | VTDSAGDDRYALFMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQIIFYTVPD |
Ga0318570_105668342 | 3300032054 | Soil | VTDSTGDESCALLMVTTPVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318533_104059471 | 3300032059 | Soil | TTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318533_106460692 | 3300032059 | Soil | VPGSVRVTDSSGDDQYALLMVTTKVDGPPYGNLTIHNARLYRFDEHDKIAAEQVIFYTTP |
Ga0318505_104103432 | 3300032060 | Soil | DSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318510_101366221 | 3300032064 | Soil | SVQVTGSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQIIFYTVPD |
Ga0318510_101547801 | 3300032064 | Soil | GPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPG |
Ga0318514_101362342 | 3300032066 | Soil | PGSVQVTDSAGDDRYALFMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQIIFYTVPD |
Ga0318524_104377232 | 3300032067 | Soil | VDGPPYGKLTIHNARLYRFDDNDKIATEQVIFYTAPN |
Ga0318524_107546252 | 3300032067 | Soil | DRYALLMVTTKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTAPG |
Ga0318553_104089471 | 3300032068 | Soil | PGSVQVTDSTGDDRYALLMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQVIFYTAPD |
Ga0306924_108162402 | 3300032076 | Soil | DDRYALFMVTTKVDGPPYGKLTIHNARLYRFDDNDKIAAEQIIFYTVPD |
Ga0318525_102095402 | 3300032089 | Soil | DGPPFGKLTIHNARLYRFDDNDKIAAEQVIFYTTPD |
Ga0318525_104842311 | 3300032089 | Soil | GDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0318525_105071581 | 3300032089 | Soil | LMVTTKVDGPPFGKLTIHNARLYRFDDNGKIAAEQVVFYTSPH |
Ga0318525_105728622 | 3300032089 | Soil | DRYALLMVTTKVDGPPYGKLTIRNARLYRFDDNGKIAAEQVIFYTAPD |
Ga0318518_105183782 | 3300032090 | Soil | MVTTEVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYTAPN |
Ga0306920_1020264962 | 3300032261 | Soil | DDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
Ga0310914_100357576 | 3300033289 | Soil | DQYALLMVTTKVDGPPYGKLTIHNARLYRFDDDDKIAAEQVIFYTTPG |
Ga0318519_106616261 | 3300033290 | Soil | LMVTTKVDGPPYGKLTIHQARLYRFDDNDKIAAEQVIFYTAPD |
Ga0318519_107559192 | 3300033290 | Soil | RVTDSAGDGRYALLMVTTEVDGPPYGKLTIRNARLYRFDDNDKIAAEQVIFYIAPN |
Ga0318519_110078551 | 3300033290 | Soil | VQVTDSAGDDRYALLMVTTKVDGPPFGKLTIHNARLYRFDDNDKIAAEQVIFCTVPD |
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