Metagenome Family F066312

Basic Information
Family ID	F066312
Family Type	Metagenome
Number of Sequences	126
Average Sequence Length	54 residues
Representative Sequence	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Number of Associated Samples	89
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.80 %
% of genes near scaffold ends (potentially truncated)	36.51 %
% of genes from short scaffolds (< 2000 bps)	81.75 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (34.921 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (67.460 % of family members)
Environment Ontology (ENVO)	Unclassified (94.444 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (91.270 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1TBL_comb48_EPIDRAFT_10561344 2TBL_comb47_HYPODRAFT_100530732 3G310J44882_100119188 4JGI26470J50227_10053115 5JGI26470J50227_10129723 6JGI26470J50227_10681701 7Ga0007850_100001529 8Ga0007811_10103531 9Ga0007811_10201631 10Ga0007865_10114511 11Ga0007846_10032053 12Ga0007817_10014845 13Ga0007869_10066592 14Ga0007869_10252532 15Ga0007861_10109192 16Ga0007879_10173461 17Ga0007877_10168821 18Ga0007877_10368952 19Ga0007875_10073203 20Ga0007875_10083333 21Ga0007880_10147391 22Ga0007880_10194162 23Ga0065173_10549551 24Ga0065174_10827722 25Ga0007804_10549032 26Ga0007804_11327131 27Ga0007827_100315253 28Ga0007854_104025902 29Ga0007809_101783932 30Ga0007876_100265113 31Ga0007876_10196414 32Ga0007876_10446033 33Ga0007876_10479002 34Ga0007876_11781311 35Ga0007881_10593341 36Ga0007881_10755331 37Ga0007881_11772941 38Ga0007806_10327123 39Ga0007813_10766782 40Ga0007813_11073942 41Ga0007813_11117891 42Ga0007882_100407623 43Ga0007862_10473642 44Ga0007871_10514061 45Ga0007857_10195473 46Ga0007815_10442743 47Ga0007815_10508811 48Ga0007816_10210433 49Ga0007816_10599673 50Ga0007816_11426251 51Ga0007807_10177603 52Ga0007807_10474443 53Ga0007859_10236331 54Ga0007859_11000371 55Ga0007866_10498731 56Ga0007824_11036422 57Ga0164296_10580812 58Ga0164296_10818871 59Ga0164296_12280222 60Ga0164296_12517142 61Ga0164297_100484842 62Ga0164297_103875172 63Ga0214177_10096033 64Ga0214255_10058013 65Ga0214254_10180363 66Ga0214207_10020543 67Ga0214246_10436941 68Ga0214219_10127044 69Ga0214219_10246412 70Ga0214174_1034874 71Ga0214206_10088173 72Ga0214175_10049724 73Ga0214171_10135712 74Ga0214247_10102313 75Ga0214164_10214741 76Ga0214164_10363484 77Ga0214164_10400611 78Ga0214166_10279923 79Ga0214192_10480591 80Ga0214192_11133532 81Ga0236341_10169822 82Ga0208615_1051802 83Ga0208254_10075871 84Ga0208504_100004023 85Ga0208505_10521392 86Ga0207957_10095501 87Ga0208738_100062014 88Ga0208738_10049255 89Ga0208871_10091622 90Ga0208256_10314591 91Ga0208250_10616332 92Ga0208380_10441613 93Ga0208251_10037298 94Ga0208251_10180803 95Ga0208387_10471362 96Ga0207955_10038664 97Ga0207955_10360974 98Ga0207955_10542441 99Ga0208876_10047597 100Ga0208378_10105555 101Ga0208875_100115815 102Ga0208865_10317872 103Ga0208614_100234712 104Ga0208877_10349353 105Ga0207958_10347651 106Ga0208739_10361932 107Ga0208618_10269531 108Ga0208744_11035521 109Ga0208260_10468922 110Ga0208260_10574032 111Ga0208389_10871262 112Ga0208379_10034331 113Ga0208507_10595403 114Ga0208498_10176143 115Ga0208499_10577123 116Ga0209777_109203372 117Ga0209777_110401341 118Ga0316219_10562274 119Ga0316220_11654551 120Ga0316218_10528202 121Ga0316218_13358962 122Ga0316223_10076371 123Ga0316222_11069862 124Ga0316226_10412153 125Ga0316225_10425691 126Ga0316225_12119923
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1TBL_comb48_EPIDRAFT_10561344 2JGI26470J50227_10681701 3Ga0007877_10168821 4Ga0007877_10368952 5Ga0007875_10083333 6Ga0007876_11781311 7Ga0007816_10599673
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 1TBL_comb48_EPIDRAFT_10561344 2JGI26470J50227_10681701 3Ga0007877_10168821 4Ga0007877_10368952 5Ga0007875_10083333 6Ga0007876_11781311 7Ga0007816_10599673
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 80.36% β-sheet: 0.00% Coil/Unstructured: 19.64%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF05866	RusA	33.33
PF01507	PAPS_reduct	12.70
PF01844	HNH	11.90
PF14549	P22_Cro	7.14
PF00145	DNA_methylase	5.56
PF00182	Glyco_hydro_19	2.38
PF04404	ERF	1.59
PF01555	N6_N4_Mtase	0.79
PF13384	HTH_23	0.79
PF13392	HNH_3	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	33.33
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	5.56
COG3179	Chitinase, GH19 family	Carbohydrate transport and metabolism [G]	2.38
COG3979	Chitodextrinase	Carbohydrate transport and metabolism [G]	2.38
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.79
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.79
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.79
COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	Function unknown [S]	0.79

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.63 %
Unclassified	root	N/A	29.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	34.92 %
Unclassified	root	N/A	29.37 %
Viruses	superkingdom	All Organisms → Viruses	35.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.92 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	33.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Unclassified	root	N/A	29.37 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	33.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.40 %
Unclassified	root	N/A	29.37 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.38 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.35 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Unclassified	root	N/A	29.37 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	33.33 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.59 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	33.33 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.97 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Unclassified	root	N/A	29.37 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.79 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.79 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.79 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	33.33 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.17 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Unclassified	root	N/A	29.37 %

Name	Rank	Taxonomy	Distribution
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	3.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.79 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.79 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Unclassified	root	N/A	29.37 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	3.17 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	33.33 %

Name	Rank	Taxonomy	Distribution
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.79 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.79 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Unclassified	root	N/A	29.37 %
unclassified Acinetobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter	0.79 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	33.33 %

Name	Rank	Taxonomy	Distribution
Acinetobacter sp. CIP 102529	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. CIP 102529	0.79 %
Bradyrhizobium sp. OK095	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. OK095	0.79 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.79 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.79 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.38 %
Unclassified	root	N/A	29.37 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	33.33 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000439\|TBL_comb48_EPIDRAFT_1056134	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1350	Open in IMG/M
3300000553\|TBL_comb47_HYPODRAFT_10053073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2438	Open in IMG/M
3300002933\|G310J44882_10011918	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2513	Open in IMG/M
3300003375\|JGI26470J50227_1005311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3600	Open in IMG/M
3300003375\|JGI26470J50227_1012972	All Organisms → cellular organisms → Bacteria	2013	Open in IMG/M
3300003375\|JGI26470J50227_1068170	Not Available	574	Open in IMG/M
3300003783\|Ga0007850_1000015	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	18741	Open in IMG/M
3300003787\|Ga0007811_1010353	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	895	Open in IMG/M
3300003787\|Ga0007811_1020163	Not Available	576	Open in IMG/M
3300003797\|Ga0007846_1003205	All Organisms → cellular organisms → Bacteria	2089	Open in IMG/M

Showing 1 to 10 of 125 entries

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Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	5.56%
Lentic	Environmental → Aquatic → Freshwater → Lentic	94.44%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	10.32%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	13.49%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	3.17%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	67.46%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	5.56%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	67.46%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	13.49%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	10.32%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.76%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	1.59%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.79%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.59%

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300000553	Trout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300002933	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M
3300003787	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09	Environmental	Open in IMG/M
3300003796	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09	Environmental	Open in IMG/M
3300003797	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07	Environmental	Open in IMG/M
3300003804	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29May09	Environmental	Open in IMG/M
3300003809	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TBL_comb48_EPIDRAFT_10561344	3300000439	Freshwater	MNLQMIVEHYAKLAXKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
TBL_comb47_HYPODRAFT_100530732	3300000553	Freshwater	MNLQIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
G310J44882_100119188	3300002933	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
JGI26470J50227_10053115	3300003375	Freshwater	MKIELIVEHYAKLANKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
JGI26470J50227_10129723	3300003375	Freshwater	MKIDLIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFYGIGKLIAQRIKELNADRHV*
JGI26470J50227_10681701	3300003375	Freshwater	MVKNIEVFVEHYAKLALKPAWIDYVRHQVKLMEQEHAFKGIGKLIAQRIKELK*
Ga0007850_100001529	3300003783	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLLEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007811_10103531	3300003787	Freshwater	HYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007811_10201631	3300003787	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007865_10114511	3300003796	Freshwater	AKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007846_10032053	3300003797	Freshwater	MVKNIEVFVEHYAKLAIKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELK*
Ga0007817_10014845	3300003804	Freshwater	MLWLINGGEMKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV*
Ga0007869_10066592	3300003809	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV*
Ga0007869_10252532	3300003809	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELK*
Ga0007861_10109192	3300003812	Freshwater	VKIDLIVEHYAKLALKPAWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELK*
Ga0007879_10173461	3300003813	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNA
Ga0007877_10168821	3300003814	Freshwater	MTLITEMNNQIIIEHYAKLAIKPAWLDYVRQQVKLMEQEPAFYGIGKLIAQRIKELK
Ga0007877_10368952	3300003814	Freshwater	LLPFKVLQMLWLINGGEMKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV*
Ga0007875_10073203	3300003823	Freshwater	VKIDLIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007875_10083333	3300003823	Freshwater	VKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0007880_10147391	3300003827	Freshwater	KIELIVEXYAKLAIKPAXLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV*
Ga0007880_10194162	3300003827	Freshwater	MKIEIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0065173_10549551	3300004686	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEKEPQFKGIGKLIAQR
Ga0065174_10827722	3300004687	Freshwater	VKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIALRIKELNAHRHV*
Ga0007804_10549032	3300004770	Freshwater	MVLNLKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV
Ga0007804_11327131	3300004770	Freshwater	VEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007827_100315253	3300004777	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPQFKGIGKLIAQRIKELK*
Ga0007854_104025902	3300004806	Freshwater	MTLITEMNNQIIIEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007809_101783932	3300004807	Freshwater	VKIELIVEHYAKLALKPAWLDYVRQQVKLMEQEAAFHGIGKLIAQRIKELNADRHV*
Ga0007876_100265113	3300006071	Freshwater	VKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007876_10196414	3300006071	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIVLRIKELNADRHV*
Ga0007876_10446033	3300006071	Freshwater	MTLITEMNNQIIIEHYAKLAIKPAWLDYVRQQVKLMEQEPAFYGIGKLIAQRIKELKNEHN*
Ga0007876_10479002	3300006071	Freshwater	MVKNIEVFVEHYAKLALKQGWIDYVRHQVKLMEQEHAFKGIGKLIAQRIKELK*
Ga0007876_11781311	3300006071	Freshwater	MNKEMFDEHYEKLALKAGWIDYVRQEVKLMEQEPAFHGIGKL
Ga0007881_10593341	3300006072	Freshwater	KIELIVDHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGISKLIAQRIKELNESVPNN*
Ga0007881_10755331	3300006072	Freshwater	MVLNLKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0007881_11772941	3300006072	Freshwater	MNNEMFVEHYAKLALKAGWIDYVRQEVKLMEQEPAFHGIGKLIDQRIK
Ga0007806_10327123	3300006100	Freshwater	MLWLINGGEMKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELN
Ga0007813_10766782	3300006103	Freshwater	MKIEIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRI
Ga0007813_11073942	3300006103	Freshwater	MKIELIVEHYAKLAMKPAWLDYVRQQVKLMEQEPAFHGIGKLITQRIKELNADRHV*
Ga0007813_11117891	3300006103	Freshwater	MLMVLNLKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV*
Ga0007882_100407623	3300006104	Freshwater	MLWLINGGEMKIELIVDHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGISKLIAQRIKELNESVPNN*
Ga0007862_10473642	3300006108	Freshwater	MVKNIEVFVEHYSKLALKQGWIDYVRHQVKLMEQEHAFKGIGKLIAQRIKELK*
Ga0007871_10514061	3300006110	Freshwater	KIELIVEHYAKLAIKPAWLDYVRQQVKLLEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007857_10195473	3300006112	Freshwater	VKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV*
Ga0007815_10442743	3300006114	Freshwater	EHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV*
Ga0007815_10508811	3300006114	Freshwater	VKIDLIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKE
Ga0007816_10210433	3300006115	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGISKLIAQRIKELNESVPNN*
Ga0007816_10599673	3300006115	Freshwater	YAKLAIKPAWLDYVRQQVKLMEQEPAFYGIGKLIAQRIKELKNEHN*
Ga0007816_11426251	3300006115	Freshwater	MNNEMFVEHYAKLALKAGWIDYVRQEVKLMEQEPAFHGIGKLIAQ
Ga0007807_10177603	3300006116	Freshwater	MLWLINGGEMKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRNV*
Ga0007807_10474443	3300006116	Freshwater	MNNEMFVEHYAKLALKAGWIDYVRQEVKLMEQEPAFHGIGKLIDQRIKELNADRNV*
Ga0007859_10236331	3300006118	Freshwater	MVKNIEVFVEHYAKLAIKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQ
Ga0007859_11000371	3300006118	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0007866_10498731	3300006119	Freshwater	MVKNIEVFVEHYAKLAIKQGWIDYVRHQVKLMEQEPQFKGIGKLI
Ga0007824_11036422	3300006121	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEKEPQFKGIGKLIAQRIKELKNTS
Ga0164296_10580812	3300013093	Freshwater	MIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNESVPNN*
Ga0164296_10818871	3300013093	Freshwater	MKIEIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNA
Ga0164296_12280222	3300013093	Freshwater	MVKNIEVFVEHYAKLALKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELK*
Ga0164296_12517142	3300013093	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEKEPQFKGIGKLIAQRIKELN*
Ga0164297_100484842	3300013094	Freshwater	MVLNLKIEIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0164297_103875172	3300013094	Freshwater	MIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQKIKELNESVSNN*
Ga0214177_10096033	3300020705	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0214255_10058013	3300020712	Freshwater	MNLQMIVEHYAKLAIKPGWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKEINADRHV
Ga0214254_10180363	3300020715	Freshwater	MNLQIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0214207_10020543	3300020716	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0214246_10436941	3300020727	Freshwater	PXMNLQMIVEHYAKLAIKPGWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKEINADRHV
Ga0214219_10127044	3300020735	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGIGKLIALRIKELNESVPNN
Ga0214219_10246412	3300020735	Freshwater	MKIEIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0214174_1034874	3300021115	Freshwater	MIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0214206_10088173	3300021131	Freshwater	MLWLINGGEMKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0214175_10049724	3300021133	Freshwater	MKIELIVDHYAKLAIKPAWLDYVRQQFKLMEQEPAFHGIGKLIALRIKELNESVPNN
Ga0214171_10135712	3300021134	Freshwater	MTLITEMNNQIIIEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQKIKELNADRHV
Ga0214247_10102313	3300021135	Freshwater	MNLQIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKEINADRHV
Ga0214164_10214741	3300021138	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0214164_10363484	3300021138	Freshwater	MNLQMIVEHYAKLAIKPGWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0214164_10400611	3300021138	Freshwater	MLWLINGGEMKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0214166_10279923	3300021139	Freshwater	MVKNIEVFVEHYAKLAMKPAWIDYVRHQVKLMEQEHAFKGIGKLIAQRIKELK
Ga0214192_10480591	3300021142	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKE
Ga0214192_11133532	3300021142	Freshwater	MKIEIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0236341_10169822	3300022591	Freshwater	VNIEFIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0208615_1051802	3300025330	Freshwater	VKIDLIVEHYAKLALKPAWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELK
Ga0208254_10075871	3300025355	Freshwater	VKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0208504_100004023	3300025358	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLLEQEPAFHGIGKLIAQRIKELNADRHV
Ga0208505_10521392	3300025366	Freshwater	VKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIALRIKELNADRHV
Ga0207957_10095501	3300025372	Freshwater	MVKNIEVFVEHYAKLAIKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELK
Ga0208738_100062014	3300025379	Freshwater	VKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0208738_10049255	3300025379	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIVLRIKELNADRHV
Ga0208871_10091622	3300025381	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV
Ga0208256_10314591	3300025382	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELN
Ga0208250_10616332	3300025383	Freshwater	MKIEIIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV
Ga0208380_10441613	3300025392	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPQFKGIGKLIAQRIKELK
Ga0208251_10037298	3300025398	Freshwater	MLWLINGGEMKIELIVDHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV
Ga0208251_10180803	3300025398	Freshwater	MVLNLKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0208387_10471362	3300025400	Freshwater	MTLITEMNNQIIIEHYAKLAIKPAWLDYVRQQVKLMEQEPAFYGIGKLIAQRIKELKNEH
Ga0207955_10038664	3300025401	Freshwater	MFMVLNLKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADRHV
Ga0207955_10360974	3300025401	Freshwater	LIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV
Ga0207955_10542441	3300025401	Freshwater	YAKLAIKPAWLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV
Ga0208876_10047597	3300025402	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELK
Ga0208378_10105555	3300025407	Freshwater	MVKNIEVFVEHYAKLALKQGWIDYVRHQVKLMEQEHAFKGIGKLIAQRIKELK
Ga0208875_100115815	3300025410	Freshwater	VKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIALRIKELNAHRHV
Ga0208865_10317872	3300025411	Freshwater	MLWLINGGEMKIELIVDHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGISKLIAQRIKELNESVPNN
Ga0208614_100234712	3300025413	Freshwater	MVLNLKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRI
Ga0208877_10349353	3300025416	Freshwater	IEHYAKLAIKPAXLDYVRQQVKLMEQEPAFHGISKLIAQRIKELNADRHV
Ga0207958_10347651	3300025421	Freshwater	VKIELIVEHYAKLALKPAWLDYVRQQVKLMEQEAAFHGIGKLIAQRIKELNADRHV
Ga0208739_10361932	3300025426	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGISKLIAQRIKELNESVPNN
Ga0208618_10269531	3300025435	Freshwater	MVLNLKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIALRIKELN
Ga0208744_11035521	3300025450	Freshwater	MKTELFVDHYAKLALKPGWIDYVRHQVKLMEQEHAFRGIGKLIAQRIKELNVDRHV
Ga0208260_10468922	3300025467	Freshwater	MNNEMFVEHYAKLALKAGWIDYVRQEVKLMEQEPAFHGIGKLIDQRIKELNADRNV
Ga0208260_10574032	3300025467	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIVLR
Ga0208389_10871262	3300025470	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRI
Ga0208379_10034331	3300025598	Freshwater	MKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKE
Ga0208507_10595403	3300025648	Freshwater	GEMKIELIVDHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGISKLIAQRIKELNESVPNN
Ga0208498_10176143	3300025785	Freshwater	VKIDLIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIK
Ga0208499_10577123	3300025789	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLISQR
Ga0209777_109203372	3300027896	Freshwater Lake Sediment	MKIDLIVEHYAKLAIKTAWLDYVRQQVKLMEQEPAFHGIGKLIALRIKELNADRHV
Ga0209777_110401341	3300027896	Freshwater Lake Sediment	MVKNIEVFVEHYAKLALKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELKXNIT
Ga0316219_10562274	3300031759	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEKEPQFKGIGKLIAQRIKELK
Ga0316220_11654551	3300031884	Freshwater	QMIVEHYAKLAIKPAWLDYVRHQVKLMEQEPAFHGIGKLIALRIKELNESVPNN
Ga0316218_10528202	3300032117	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNESVPNN
Ga0316218_13358962	3300032117	Freshwater	MKIDLIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFYGIGKLIAQRIKELNADRHV
Ga0316223_10076371	3300032560	Freshwater	VKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEKEPQFKGIGKLIAQRIKELN
Ga0316222_11069862	3300032561	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEQEPQFKGIGKLIAQRIKELN
Ga0316226_10412153	3300032562	Freshwater	MVKNIEVFVEHYAKLAMKQGWIDYVRHQVKLMEKEPQFKGIGKLIAQRIKELN
Ga0316225_10425691	3300032675	Freshwater	QMKIELIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQKIKELNESVSNN
Ga0316225_12119923	3300032675	Freshwater	MNLQMIVEHYAKLAIKPAWLDYVRQQVKLMEQEPAFHGIGKLIAQRIKELNADR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066312

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences