NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F066250

Metagenome Family F066250

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F066250
Family Type Metagenome
Number of Sequences 127
Average Sequence Length 39 residues
Representative Sequence MFTRARLFCAGLLAAATTAALVGAPAMVQAGITFNFLD
Number of Associated Samples 43
Number of Associated Scaffolds 96

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 88.19 %
% of genes near scaffold ends (potentially truncated) 11.02 %
% of genes from short scaffolds (< 2000 bps) 65.35 %
Associated GOLD sequencing projects 37
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (51.969 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(37.795 % of family members)
Environment Ontology (ENVO) Unclassified
(45.669 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(67.717 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 54.55%    β-sheet: 0.00%    Coil/Unstructured: 45.45%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 96 Family Scaffolds
PF13466STAS_2 8.33
PF04264YceI 4.17
PF07969Amidohydro_3 3.12
PF01523PmbA_TldD 2.08
PF04226Transgly_assoc 2.08
PF00589Phage_integrase 2.08
PF02656DUF202 2.08
PF13751DDE_Tnp_1_6 2.08
PF00753Lactamase_B 1.04
PF13419HAD_2 1.04
PF08241Methyltransf_11 1.04
PF07883Cupin_2 1.04
PF08240ADH_N 1.04
PF07690MFS_1 1.04
PF02467Whib 1.04
PF13231PMT_2 1.04
PF00857Isochorismatase 1.04
PF13577SnoaL_4 1.04
PF03450CO_deh_flav_C 1.04
PF12681Glyoxalase_2 1.04
PF11774Lsr2 1.04
PF14534DUF4440 1.04
PF14023DUF4239 1.04
PF02412TSP_3 1.04
PF08003Methyltransf_9 1.04
PF01979Amidohydro_1 1.04
PF03551PadR 1.04
PF03795YCII 1.04
PF11746DUF3303 1.04
PF13191AAA_16 1.04

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 96 Family Scaffolds
COG2353Polyisoprenoid-binding periplasmic protein YceIGeneral function prediction only [R] 4.17
COG0312Zn-dependent protease PmbA/TldA or its inactivated homologGeneral function prediction only [R] 2.08
COG2149Uncharacterized membrane protein YidH, DUF202 familyFunction unknown [S] 2.08
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 2.08
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 1.04
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 1.04
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 1.04
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 1.04
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 1.04
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 1.04


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms51.97 %
UnclassifiedrootN/A48.03 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2067725001|GPWNP_F5MPXY301BWV1CNot Available506Open in IMG/M
3300000559|F14TC_103693134Not Available546Open in IMG/M
3300000559|F14TC_103693134Not Available546Open in IMG/M
3300001431|F14TB_100478622Not Available1331Open in IMG/M
3300005713|Ga0066905_100293761All Organisms → cellular organisms → Bacteria1272Open in IMG/M
3300005937|Ga0081455_10000332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia61974Open in IMG/M
3300005937|Ga0081455_10000332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia61974Open in IMG/M
3300005937|Ga0081455_10000332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia61974Open in IMG/M
3300005937|Ga0081455_10001592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria27747Open in IMG/M
3300005937|Ga0081455_10001592All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria27747Open in IMG/M
3300005937|Ga0081455_10004877All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia14880Open in IMG/M
3300005937|Ga0081455_10007015All Organisms → cellular organisms → Bacteria11969Open in IMG/M
3300005937|Ga0081455_10007015All Organisms → cellular organisms → Bacteria11969Open in IMG/M
3300005937|Ga0081455_10007015All Organisms → cellular organisms → Bacteria11969Open in IMG/M
3300005937|Ga0081455_10009459All Organisms → cellular organisms → Bacteria10026Open in IMG/M
3300005937|Ga0081455_10009459All Organisms → cellular organisms → Bacteria10026Open in IMG/M
3300005937|Ga0081455_10016605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia7098Open in IMG/M
3300005937|Ga0081455_10016605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia7098Open in IMG/M
3300005937|Ga0081455_10016605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia7098Open in IMG/M
3300005937|Ga0081455_10016965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7000Open in IMG/M
3300005937|Ga0081455_10016965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7000Open in IMG/M
3300005937|Ga0081455_10022010All Organisms → cellular organisms → Bacteria5967Open in IMG/M
3300005937|Ga0081455_10035427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4460Open in IMG/M
3300005937|Ga0081455_10035427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4460Open in IMG/M
3300005937|Ga0081455_10052303All Organisms → cellular organisms → Bacteria → Proteobacteria3498Open in IMG/M
3300005937|Ga0081455_10158465Not Available1737Open in IMG/M
3300005937|Ga0081455_10158465Not Available1737Open in IMG/M
3300005937|Ga0081455_10158465Not Available1737Open in IMG/M
3300005937|Ga0081455_10233553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1356Open in IMG/M
3300005937|Ga0081455_10233553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1356Open in IMG/M
3300005937|Ga0081455_10279055Not Available1208Open in IMG/M
3300005937|Ga0081455_10290843Not Available1176Open in IMG/M
3300005937|Ga0081455_10375290All Organisms → cellular organisms → Bacteria → Terrabacteria group995Open in IMG/M
3300005981|Ga0081538_10001268All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria26286Open in IMG/M
3300005981|Ga0081538_10001329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia25435Open in IMG/M
3300005981|Ga0081538_10001329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia25435Open in IMG/M
3300005981|Ga0081538_10001329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia25435Open in IMG/M
3300005981|Ga0081538_10002103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria19854Open in IMG/M
3300005981|Ga0081538_10015234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales5964Open in IMG/M
3300006049|Ga0075417_10206654All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria931Open in IMG/M
3300006844|Ga0075428_100059864Not Available4170Open in IMG/M
3300006844|Ga0075428_100132059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2715Open in IMG/M
3300006844|Ga0075428_100136679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2665Open in IMG/M
3300006844|Ga0075428_100136679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2665Open in IMG/M
3300006844|Ga0075428_100181824All Organisms → cellular organisms → Bacteria2276Open in IMG/M
3300006844|Ga0075428_100181824All Organisms → cellular organisms → Bacteria2276Open in IMG/M
3300006844|Ga0075428_100210949All Organisms → cellular organisms → Bacteria2098Open in IMG/M
3300006844|Ga0075428_100437303All Organisms → cellular organisms → Bacteria → Terrabacteria group1401Open in IMG/M
3300006844|Ga0075428_100437303All Organisms → cellular organisms → Bacteria → Terrabacteria group1401Open in IMG/M
3300006844|Ga0075428_100656214Not Available1119Open in IMG/M
3300006844|Ga0075428_101589411Not Available684Open in IMG/M
3300006844|Ga0075428_101589411Not Available684Open in IMG/M
3300006844|Ga0075428_101589411Not Available684Open in IMG/M
3300006845|Ga0075421_100067427All Organisms → cellular organisms → Bacteria4520Open in IMG/M
3300006845|Ga0075421_100317275Not Available1890Open in IMG/M
3300006845|Ga0075421_100622385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans flavus1265Open in IMG/M
3300006845|Ga0075421_100866718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1033Open in IMG/M
3300006845|Ga0075421_100930411All Organisms → cellular organisms → Bacteria → Terrabacteria group989Open in IMG/M
3300006845|Ga0075421_101589398Not Available711Open in IMG/M
3300006845|Ga0075421_101923300Not Available632Open in IMG/M
3300006846|Ga0075430_100386139All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300006847|Ga0075431_100348396Not Available1489Open in IMG/M
3300006847|Ga0075431_100392687Not Available1390Open in IMG/M
3300006847|Ga0075431_101010191Not Available798Open in IMG/M
3300006853|Ga0075420_100218788All Organisms → cellular organisms → Bacteria → Terrabacteria group1661Open in IMG/M
3300006853|Ga0075420_100730231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium rhodesiae → Mycolicibacterium rhodesiae NBB3854Open in IMG/M
3300006853|Ga0075420_101871437Not Available513Open in IMG/M
3300006880|Ga0075429_100192712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium1785Open in IMG/M
3300009100|Ga0075418_10098687All Organisms → cellular organisms → Bacteria3102Open in IMG/M
3300009100|Ga0075418_10204201Not Available2104Open in IMG/M
3300009147|Ga0114129_10856755Not Available1155Open in IMG/M
3300009147|Ga0114129_10856755Not Available1155Open in IMG/M
3300009147|Ga0114129_10856755Not Available1155Open in IMG/M
3300009147|Ga0114129_10856755Not Available1155Open in IMG/M
3300009147|Ga0114129_11566304Not Available808Open in IMG/M
3300009147|Ga0114129_12433692Not Available627Open in IMG/M
3300009168|Ga0105104_10494725Not Available688Open in IMG/M
3300009168|Ga0105104_10703562Not Available581Open in IMG/M
3300009801|Ga0105056_1055824Not Available562Open in IMG/M
3300009801|Ga0105056_1055824Not Available562Open in IMG/M
3300009807|Ga0105061_1017214Not Available945Open in IMG/M
3300009810|Ga0105088_1004951All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides islandensis1833Open in IMG/M
3300009815|Ga0105070_1051439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia764Open in IMG/M
3300009818|Ga0105072_1103511Not Available573Open in IMG/M
3300009836|Ga0105068_1009220Not Available1584Open in IMG/M
3300010029|Ga0105074_1009777Not Available1501Open in IMG/M
3300010029|Ga0105074_1010750Not Available1444Open in IMG/M
3300010362|Ga0126377_11717781All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300010362|Ga0126377_12625987Not Available579Open in IMG/M
3300011000|Ga0138513_100059769Not Available583Open in IMG/M
3300018072|Ga0184635_10339335Not Available580Open in IMG/M
3300018078|Ga0184612_10455090Not Available635Open in IMG/M
3300018078|Ga0184612_10455090Not Available635Open in IMG/M
3300018081|Ga0184625_10024632Not Available2905Open in IMG/M
3300018081|Ga0184625_10068699Not Available1798Open in IMG/M
3300018081|Ga0184625_10134828Not Available1287Open in IMG/M
3300018081|Ga0184625_10173538Not Available1128Open in IMG/M
3300018466|Ga0190268_10559214Not Available797Open in IMG/M
3300018469|Ga0190270_12170654Not Available615Open in IMG/M
3300018469|Ga0190270_12170654Not Available615Open in IMG/M
3300018481|Ga0190271_13233898Not Available546Open in IMG/M
3300027056|Ga0209879_1069471Not Available559Open in IMG/M
3300027209|Ga0209875_1037038Not Available587Open in IMG/M
3300027277|Ga0209846_1010530Not Available1570Open in IMG/M
3300027277|Ga0209846_1010530Not Available1570Open in IMG/M
3300027490|Ga0209899_1028990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1210Open in IMG/M
3300027873|Ga0209814_10186014All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3895Open in IMG/M
3300027909|Ga0209382_10124871Not Available2999Open in IMG/M
3300027909|Ga0209382_10130867All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2920Open in IMG/M
3300027909|Ga0209382_10187643All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → Candidatus Dormibacter → unclassified Candidatus Dormibacter → Candidatus Dormibacter sp. RRmetagenome_bin122376Open in IMG/M
3300027909|Ga0209382_10444927All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes1436Open in IMG/M
3300027909|Ga0209382_10502951All Organisms → cellular organisms → Bacteria → Terrabacteria group1334Open in IMG/M
3300027909|Ga0209382_10540715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1277Open in IMG/M
3300027909|Ga0209382_10540715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1277Open in IMG/M
3300027909|Ga0209382_10769480Not Available1028Open in IMG/M
3300027909|Ga0209382_10769480Not Available1028Open in IMG/M
3300027909|Ga0209382_11395249Not Available704Open in IMG/M
3300027957|Ga0209857_1007781All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium2232Open in IMG/M
3300028589|Ga0247818_10608727All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Aquihabitans → unclassified Aquihabitans → Aquihabitans sp. Kera 3752Open in IMG/M
3300030006|Ga0299907_10048528All Organisms → cellular organisms → Bacteria3372Open in IMG/M
3300030006|Ga0299907_10218388All Organisms → cellular organisms → Bacteria1571Open in IMG/M
3300030006|Ga0299907_10742204Not Available747Open in IMG/M
3300031228|Ga0299914_10061810All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3221Open in IMG/M
3300031228|Ga0299914_10061810All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3221Open in IMG/M
3300033550|Ga0247829_11410408Not Available575Open in IMG/M
3300033551|Ga0247830_11247351All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae594Open in IMG/M
3300033551|Ga0247830_11738927Not Available500Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere37.80%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere22.05%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand11.81%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.51%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.51%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere4.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.15%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.36%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.57%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil1.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.79%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.79%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.79%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725001Soil microbial communities from Great Prairies - Wisconsin Native Prairie soilEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009801Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30EnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300009810Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30EnvironmentalOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300009818Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40EnvironmentalOpen in IMG/M
3300009836Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20EnvironmentalOpen in IMG/M
3300010029Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300011000Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300027056Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027209Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027277Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027490Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027957Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPWNP_039589902067725001SoilMLTRARVIWAGLLAAATTAVLVGAPAMVQAGITATAAD
F14TC_10369313423300000559SoilMTRRIRLLWAGLLAAVAAAAFLGAPAMIQAGITYTFLD*
F14TC_10369313433300000559SoilMAAVKGADMFTRARLICAGLLAAATTGVLVGAPAMVQGGLSFNALD*
F14TB_10047862243300001431SoilMAAVKGADMFTRARLICAGLLAAATTGVLVGAPAMVQAGPSFKALD*
Ga0066905_10029376133300005713Tropical Forest SoilMFTRARLICAGLLAAATTAAVVGTPAILAGITAFPVD*
Ga0081455_10000332623300005937Tabebuia Heterophylla RhizosphereMFTRTRLLWAGLLAAATTAVLVGAPAMVQAGIALNALG*
Ga0081455_10000332633300005937Tabebuia Heterophylla RhizosphereMFTRTRLLWAGLLAAAATAILVGAPAMVQAGIAFNAID*
Ga0081455_10000332643300005937Tabebuia Heterophylla RhizosphereMTGRIRFLWAGLLAAAVATAAFVTPAILAGLTVIPVD*
Ga0081455_1000159223300005937Tabebuia Heterophylla RhizosphereMSGRIRLLWAGLLAAATTAVLVGAPAMVQAGVAFNAID*
Ga0081455_1000159233300005937Tabebuia Heterophylla RhizosphereMTGRLRLMCAGLLAAATTAVLVGAPALIHAGISARAID*
Ga0081455_10004877123300005937Tabebuia Heterophylla RhizosphereMAAVKGADMFTRARLFWAGLLAAATTAVLVGGPAVVQAGITFRNLD*
Ga0081455_10007015183300005937Tabebuia Heterophylla RhizosphereMFTRARLIWAGLVAAATTGVLVGAPAVVQAGITLNFID*
Ga0081455_10007015193300005937Tabebuia Heterophylla RhizosphereMFTRVRLFWAGLLAAATTAVLVGSPAMVQAGITLNTID*
Ga0081455_10007015203300005937Tabebuia Heterophylla RhizosphereMFTRARLFCAGLLAAATSAVLVGGPAMVQAGITFNVLD*
Ga0081455_10009459103300005937Tabebuia Heterophylla RhizosphereMLTRARLIWAGLLAAAVTATLVGAPAMVQAGISFNGID*
Ga0081455_10009459113300005937Tabebuia Heterophylla RhizosphereMFTRARLIGAGLLAAALTAVLVGAPAVVQAGIILNGLD*
Ga0081455_10016605143300005937Tabebuia Heterophylla RhizosphereMSGRIRLLSAGLLAAVTTAVLLGGPAMVQAGIVFNSID*
Ga0081455_1001660573300005937Tabebuia Heterophylla RhizosphereMLTRPRLFWAGLLAAATTAVLVGGPAMVQAGIIFNSID*
Ga0081455_1001660583300005937Tabebuia Heterophylla RhizosphereMTGRIRILWAGLLATAVLVGAPAMVQAGIILNGLD*
Ga0081455_1001696553300005937Tabebuia Heterophylla RhizosphereMFTRARLFWAGLLAAATTAALVGAPAVVQAGITYNFLD*
Ga0081455_1001696563300005937Tabebuia Heterophylla RhizosphereMFTRARLFCAGLLAAATTAALVGAPAMVQAGITFNFLD*
Ga0081455_1002201043300005937Tabebuia Heterophylla RhizosphereMSGRIRLLWAGLLAATTTAALLGAPAMIQAGIALNGLD*
Ga0081455_1003542763300005937Tabebuia Heterophylla RhizosphereMTGRIRLLWAGLLAAATLVSAPTIVHAGITLNTID*
Ga0081455_1003542783300005937Tabebuia Heterophylla RhizosphereMFTRARLICAGLLAAATTTVLVGAPAVVQAGITFNFID*
Ga0081455_1005230343300005937Tabebuia Heterophylla RhizosphereMTGRIRLLWAALLAAATTAAVLGAPAVVQAGIVFNGID*
Ga0081455_1015846533300005937Tabebuia Heterophylla RhizosphereMFTRARLIWAGLLAAATTAALVGAPAAVQAGITFNALD*
Ga0081455_1015846543300005937Tabebuia Heterophylla RhizosphereMFTRARLICAGLLAAATTAALVGGPAMVQAGISFNYLD*
Ga0081455_1015846553300005937Tabebuia Heterophylla RhizosphereMLTRARLFCAGLLAAATTAVLVGATAMVQAGISFNTLD*
Ga0081455_1023355323300005937Tabebuia Heterophylla RhizosphereMLTRARLFWAGLLAAATTAVLVGAPAVVQAGVTFNFVD*
Ga0081455_1023355333300005937Tabebuia Heterophylla RhizosphereMFKRACLIWAGLLAAATTAVLVGAPAVVLAGISFQAVD*
Ga0081455_1027905513300005937Tabebuia Heterophylla RhizosphereVAPKERRRHIAAARGADMFTRVRLIWAGLLAAATTAALVGVPAMVHAGIALNALD*
Ga0081455_1029084313300005937Tabebuia Heterophylla RhizosphereMFTRARLFWAGLLAAATTAALVGAPAVLQAGITFNFID*
Ga0081455_1037529013300005937Tabebuia Heterophylla RhizosphereMFTQVRLIWAGLLAATTTAALVGAPAMVHAGISLNGID*
Ga0081538_1000126853300005981Tabebuia Heterophylla RhizosphereMLICARSFCVGLLAAATAAALVGAPAMIHAGIAFNAID*
Ga0081538_10001329173300005981Tabebuia Heterophylla RhizosphereMFTRARLICAGLLAAATTAVYVGGPAVVHAGIALNAID*
Ga0081538_10001329183300005981Tabebuia Heterophylla RhizosphereMLTRVRLLWAGLLAAAISAALVGGPAMVQAGVTFNFVD*
Ga0081538_10001329193300005981Tabebuia Heterophylla RhizosphereMLTRARMICAGLLAAAITAALVGAPAMIHAGITLNTID*
Ga0081538_1000210313300005981Tabebuia Heterophylla RhizosphereVRLIWAGLLAAATTAVLVGVPAVVQAGISFNAID*
Ga0081538_1001523463300005981Tabebuia Heterophylla RhizosphereMFTRVRLIWAGLLAAATTAALVGAPAMVHAGISLNGID*
Ga0075417_1020665413300006049Populus RhizosphereMSGRIRLLWAGLVAATVTSILIGTPALVQAGITLNTID*
Ga0075428_10005986453300006844Populus RhizosphereMCTRARLIWAGLVAAATTAVLVGAPALVQAGITATAAD*
Ga0075428_10013205933300006844Populus RhizosphereVFTQVRLIWAGLLAAATTAALVGAPAMVHAGISFNVLD*
Ga0075428_10013667943300006844Populus RhizosphereMSGRIGLLWAGLLAAATTAALVGAPAVVQAGLTFNFLD*
Ga0075428_10013667953300006844Populus RhizosphereMFTRARLICAGLLAAATAAVLVGGPAMVEAGITYNFLD*
Ga0075428_10018182423300006844Populus RhizosphereMAAVQGADMFTRARLICAGLLAAATTGVLVGAPAMVQAGITFRNLD*
Ga0075428_10018182433300006844Populus RhizosphereMTRRIRLLWAGLFAAVAAAAFVGAPAMIQAGITYNFLD*
Ga0075428_10021094933300006844Populus RhizosphereMSGRIRLLWAGLLAATTAAALVGTPAMIQAGLTFNALD*
Ga0075428_10043730333300006844Populus RhizosphereMFTRARLFWAGLLAASITAVLVGGPAMVQAGVAFNGID*
Ga0075428_10043730343300006844Populus RhizosphereMFTRARLICAGLLAAATTAVLVGAPAVVQAGIAFNGLD*
Ga0075428_10065621443300006844Populus RhizosphereMSGRIRVLCAGLLAAATTVVLVGGPAMVQAGITFNFVD*
Ga0075428_10158941113300006844Populus RhizosphereMFTRARLIGAGLLAAATTAVLVGAPAMIHAGVVFNALD*
Ga0075428_10158941133300006844Populus RhizosphereMTGRIRLLWAGLLAAATTAALVGAPAVVQAGITYNFID*
Ga0075428_10158941143300006844Populus RhizosphereMFTRARLFCAGLLAATTTAVLVGAPAMVQAGVSFNFVD*
Ga0075421_10006742763300006845Populus RhizosphereMAAVKGADMFTRARLICAGLLAAATTGVLVGAPAMVQAGITFRNLD*
Ga0075421_10031727523300006845Populus RhizosphereMSGRIRVLCAGLLAAATTAVLVGGPAMVQAGITFNFID*
Ga0075421_10062238533300006845Populus RhizosphereRHIAAAKGADMFTRTRLICAGLLAAAATAVLVGAPAVVQAGVSFNFVD*
Ga0075421_10086671823300006845Populus RhizosphereVVAPKQRRRHIAAAKGAAVFTQVRLIWAGLLAAATTAALVGAPALVHAGISFNLLD*
Ga0075421_10093041123300006845Populus RhizosphereMSGRIRVLCAGLLAAATTVVLVGGPAMVQAGITFNCID*
Ga0075421_10158939823300006845Populus RhizosphereGRIRLLWAGLLAATTTAALLGAPAMIQAGIALNGLD*
Ga0075421_10192330023300006845Populus RhizosphereMAAVKGADMFTRARLICAGLLAAATTGVLVGAPAMVQAGLSFNALD*
Ga0075430_10038613933300006846Populus RhizosphereIRLLWAGLLAATTAAALVGTPAMIQAGLTFNALD*
Ga0075431_10034839613300006847Populus RhizosphereMSGRIRVLCAGLLAAATTAVLVGGPAMVQAGITLNFID*
Ga0075431_10039268753300006847Populus RhizosphereMTGRIRLLRAGLLAAATTAALVGAPAVVQAGITYNFID*
Ga0075431_10101019133300006847Populus RhizosphereVAAVKGADMFTRARLFWAGLLAASITAVLVGGPAMVQAGVAFNGID*
Ga0075420_10021878843300006853Populus RhizosphereAAAKGAAVFTQVRLIWAGLLAAATTAALVGAPALVHAGISFNLLD*
Ga0075420_10073023123300006853Populus RhizosphereVCAGLLAGATTAVLVGAPAMSQAGITFRALESRG*
Ga0075420_10187143733300006853Populus RhizosphereMTGRIRLLRAGLLAAATTAVLVGGPAMVQAGVAFNGID*
Ga0075429_10019271213300006880Populus RhizosphereVFTRARLIWTVLLAAATTATFVGAPALIHAGISFRALD*
Ga0075418_1009868753300009100Populus RhizosphereMAAVKGADMFTRARLICAGLLAATTTGVLVGAPAMVQAGITFRNLD*
Ga0075418_1020420123300009100Populus RhizosphereMSGRIRLLWTGLLAAATTAALVGVPAMIHAGITAFPVD*
Ga0114129_1085675523300009147Populus RhizosphereMFTRTRLICAGLLAAAATAVLVGAPAVVQAGVSFNFVD*
Ga0114129_1085675533300009147Populus RhizosphereMFTRTRLFWAGLLAAATTAVLVGAPAMVQAGITYNFID*
Ga0114129_1085675543300009147Populus RhizosphereMFTRARLFWAGLLAAATTAALVGAPAVVQAGITFNAID*
Ga0114129_1085675553300009147Populus RhizosphereMFTRARLICAGLLAAATTAVFVGAPAMIHAGVVFNAID*
Ga0114129_1156630413300009147Populus RhizosphereSTEELTMSGRVRLLWAGLLAAATTAVLVGAPAVVQAGIILNGLD*
Ga0114129_1243369213300009147Populus RhizosphereMSGRIRVLCAGLLAAATTAVLVGGPAMVQAGITHNFLG*
Ga0105104_1049472533300009168Freshwater SedimentMSGRIRLLCAGLLAAATTAVLVAAPAVVQAGITFNLLD*
Ga0105104_1070356223300009168Freshwater SedimentIRLLWAGLLVAATTAALVGAPAMIHAGITFRSLD*
Ga0105056_105582413300009801Groundwater SandMFTRARLICAGLLAAATTTVLVGAMVHAGITFNGID*
Ga0105056_105582423300009801Groundwater SandMFTRARLICAGLLAAATTAALVGAPAMVQSGIILNALD*
Ga0105061_101721413300009807Groundwater SandMFTRARLICAGLLAAATAAVLVGAPAVAQAGIVFNSID*
Ga0105088_100495123300009810Groundwater SandMTGRIRLLWAGLLAAATTAALVGAPAMIHAGITLNTID*
Ga0105070_105143913300009815Groundwater SandMFTRARLICAVPGRGCTTAALVGAPATIHAGITLTGLD*
Ga0105072_110351123300009818Groundwater SandMFTRARLICAGLLAAATAAVLVGAPAVVQAGIVFNSID*
Ga0105068_100922053300009836Groundwater SandRRHIAAVKGADMFTRARLICAGLLAATTAALVGAPAMVQAGISFNLLD*
Ga0105074_100977733300010029Groundwater SandMSGRIRLLWAGLLAAATTAALLGAPAMVQAGISFNAID*
Ga0105074_101075013300010029Groundwater SandMFTRARLICAGLLAAATTAALVGAPAMVHAGISFNLPD*
Ga0126377_1171778123300010362Tropical Forest SoilMSGRIRLLWAGLAAAAVTSVLIGTPALVQAGIVFNALD*
Ga0126377_1262598723300010362Tropical Forest SoilMFTRAQLIWAGLLAAATTAILVGAPAVVQAGITATAID*
Ga0138513_10005976913300011000SoilMAWEGADMFTRARLFWAGLLAATTTAALVGAPAMIHAGITARAID*
Ga0184635_1033933523300018072Groundwater SedimentMSGRIRLLWAGLLAAATTTALLGAPAMVQAGISFNAID
Ga0184612_1045509013300018078Groundwater SedimentDMFTRTRLLWAGLLAATTTAVLVGGPAMVQAGVAFNGID
Ga0184612_1045509033300018078Groundwater SedimentMMRARLFWAGLLAAATTAVLVGGPAMVQAGISFNLLD
Ga0184625_1002463243300018081Groundwater SedimentMTRARLFWAGLLAAATTAVLVGAPAVVHAGISFQALE
Ga0184625_1006869953300018081Groundwater SedimentMSTRARLICAGLLAAATTAAQVGAPAMVHAGISFNLLD
Ga0184625_1013482833300018081Groundwater SedimentMFTRARPICAGLLAAATTAVLVGAPAVVHAGISASAID
Ga0184625_1017353823300018081Groundwater SedimentMSGRIRLLWAGLLAAATTAALLGAPAMVQAGISFNAID
Ga0190268_1055921423300018466SoilMFTRARLICAGLLAAATTAVLVGAPAVVQAGIILNALD
Ga0190270_1217065423300018469SoilMRRIRLLWAGLLAASTTAALVGAPAMIHAGISARALD
Ga0190270_1217065433300018469SoilMVASKGADVMTRARLFWAGLLAAATTAVLVGGPAMVQAGISFNVLD
Ga0190271_1323389813300018481SoilMTRARLFCAGLLAAATTAALVGMPAMVQAGISFSALE
Ga0209879_106947113300027056Groundwater SandMFTRARLICAGLLAAATAAVLVGAPAVVQAGIVFNSID
Ga0209875_103703823300027209Groundwater SandMTGRIRLLWAGLLAAATTAALVGAPAMIHAGITAHGLE
Ga0209846_101053043300027277Groundwater SandMTGRIRLLWAGLLAAATTAALVGAPAMIHAGITLNTID
Ga0209846_101053063300027277Groundwater SandMFTQARLFWAGLLAAATTAALVGTPAMIQAGISFNVLD
Ga0209899_102899033300027490Groundwater SandMFTRARLICAGLLAAATTAALVGAPAMVHAGISFDLLD
Ga0209814_1018601433300027873Populus RhizosphereMSGRIRLLWAGLVAATVTSILIGTPALVQAGITLNTID
Ga0209382_1012487133300027909Populus RhizosphereMSGRIRVLCAGLLAAATTAVLVGGPAMVQAGITFNFID
Ga0209382_1013086733300027909Populus RhizosphereMCTRARLIWAGLVAAATTAVLVGAPALVQAGITATAAD
Ga0209382_1018764323300027909Populus RhizosphereMFTRARLIGAGLLAAATTAVLVGAPAMIHAGVVFNALD
Ga0209382_1044492733300027909Populus RhizosphereVFTQVRLIWAGLLAAATTAALVGAPAMVHAGISFNVLD
Ga0209382_1050295113300027909Populus RhizosphereMSGRIRVLCAGLLAAATTVVLVGGPAMVQAGITFNCID
Ga0209382_1054071523300027909Populus RhizosphereMSGRIGLLWAGLLAAATTAALVGAPAVVQAGLTFNFLD
Ga0209382_1054071533300027909Populus RhizosphereMFTRARLICAGLLAAATAAVLVGGPAMVEAGITYNFLD
Ga0209382_1076948033300027909Populus RhizosphereMTRRIRLLWAGLFAAVAAAAFVGAPAMIQAGITYNFLD
Ga0209382_1076948043300027909Populus RhizosphereMAAVKGADMFTRARLICAGLLAAATTGVLVGAPAMVQAGITFRNLD
Ga0209382_1139524923300027909Populus RhizosphereMFTRTRLICAGLLAAAATAVLVGAPAVVQAGVSFNFVD
Ga0209857_100778163300027957Groundwater SandIAAVKGADMFTRARLICAGLLAATTAALVGAPAMVQAGISFNLLD
Ga0247818_1060872713300028589SoilSGRIRLLWAGLVAATVTSILIGTPALVQAGIVFNVLD
Ga0299907_1004852863300030006SoilMFTRARLIWAGLLAAATTAFLVGAPAMVQAGITATAAD
Ga0299907_1021838853300030006SoilMFTRARLICAGLLAAVTTTAVLVGAPAMVQAGITF
Ga0299907_1074220433300030006SoilMAAGKGADMFTQARLFWAGLLAAATTAVLVGGPAMVQAGITLNVLD
Ga0299914_1006181043300031228SoilMFTRARLICAGLLAAATTAVLVGAPAVVQAGLTATGVE
Ga0299914_1006181053300031228SoilMFTRARLICAGLLAAVTTTAVLVGAPAMVQAGITFNLLD
Ga0247829_1141040823300033550SoilMAAGKGADVMTRARLFWAGLLAAATTAVLIGAPAVVQAGITFNGLD
Ga0247830_1124735113300033551SoilSREMSGRIRLLWAGLVAATVTSILIGTPALVQAGIVFNVLD
Ga0247830_1173892723300033551SoilMTRARLFWAGLLAAATTAVLIGAPAVVQAGITFNGLD


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