Metagenome / Metatranscriptome Family F066248

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066248
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	44 residues
Representative Sequence	MNGLSAQGLADLAGVTEAEVERMVDLGILVARDGAGPFLET
Number of Associated Samples	91
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.91 %
% of genes near scaffold ends (potentially truncated)	98.43 %
% of genes from short scaffolds (< 2000 bps)	88.98 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.693 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.685 % of family members)
Environment Ontology (ENVO)	Unclassified (34.646 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (30.709 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.09% β-sheet: 0.00% Coil/Unstructured: 73.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF01791	DeoC	4.72
PF00291	PALP	4.72
PF04679	DNA_ligase_A_C	3.15
PF00106	adh_short	2.36
PF00436	SSB	2.36
PF02467	Whib	2.36
PF12867	DinB_2	2.36
PF00089	Trypsin	2.36
PF12902	Ferritin-like	1.57
PF00589	Phage_integrase	1.57
PF13565	HTH_32	1.57
PF00353	HemolysinCabind	1.57
PF00196	GerE	1.57
PF13191	AAA_16	1.57
PF09335	SNARE_assoc	0.79
PF09685	DUF4870	0.79
PF12728	HTH_17	0.79
PF04264	YceI	0.79
PF00563	EAL	0.79
PF13400	Tad	0.79
PF05726	Pirin_C	0.79
PF13460	NAD_binding_10	0.79
PF00296	Bac_luciferase	0.79
PF04216	FdhE	0.79
PF14329	DUF4386	0.79
PF13380	CoA_binding_2	0.79
PF13649	Methyltransf_25	0.79
PF00246	Peptidase_M14	0.79
PF05231	MASE1	0.79
PF08240	ADH_N	0.79
PF10042	DUF2278	0.79
PF08447	PAS_3	0.79
PF01979	Amidohydro_1	0.79
PF01790	LGT	0.79
PF13338	AbiEi_4	0.79
PF01152	Bac_globin	0.79
PF13561	adh_short_C2	0.79
PF05368	NmrA	0.79
PF00795	CN_hydrolase	0.79
PF03403	PAF-AH_p_II	0.79
PF00293	NUDIX	0.79
PF10094	DUF2332	0.79
PF03551	PadR	0.79
PF14690	zf-ISL3	0.79
PF13349	DUF4097	0.79
PF00962	A_deaminase	0.79
PF00400	WD40	0.79
PF00174	Oxidored_molyb	0.79
PF02156	Glyco_hydro_26	0.79
PF13701	DDE_Tnp_1_4	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.15
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	2.36
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	2.36
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.79
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.79
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.79
COG4188	Predicted dienelactone hydrolase	General function prediction only [R]	0.79
COG4124	Beta-mannanase	Carbohydrate transport and metabolism [G]	0.79
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.79
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.79
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.79
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.79
COG3058	Formate dehydrogenase maturation protein FdhE	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.79
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.79
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.79
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.79
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.79
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.79
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	0.79
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.79
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.79
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.79
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.79
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.79
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.48 %
Unclassified	root	N/A	42.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.48 %
Unclassified	root	N/A	42.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.69 %
Unclassified	root	N/A	42.52 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.22 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	3.15 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.28 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	3.15 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.36 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19.69 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3.15 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.57 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.57 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	3.15 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.36 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.57 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.57 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.57 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.79 %
Thermogemmatisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales	0.79 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	0.79 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.79 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.57 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.79 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.79 %
Thermogemmatisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae	0.79 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	0.79 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.79 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.79 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.57 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.79 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.79 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.79 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.79 %
Spongiactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora	0.79 %
Thermogemmatispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae → Thermogemmatispora	0.79 %
Quadrisphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Quadrisphaera	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.57 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.79 %
unclassified Quadrisphaera	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Quadrisphaera → unclassified Quadrisphaera	0.79 %
Spongiactinospora gelatinilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora gelatinilytica	0.79 %
Thermogemmatispora onikobensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae → Thermogemmatispora → Thermogemmatispora onikobensis	0.79 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.79 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.79 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.52 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.57 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Quadrisphaera sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Quadrisphaera → unclassified Quadrisphaera → Quadrisphaera sp.	0.79 %
Pseudonocardia sp. TRM90224	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. TRM90224	0.79 %
Spongiactinospora gelatinilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora gelatinilytica	0.79 %
Thermogemmatispora onikobensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae → Thermogemmatispora → Thermogemmatispora onikobensis	0.79 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.79 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.79 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2420003	Not Available	915	Open in IMG/M
3300001431\|F14TB_100716456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540	Open in IMG/M
3300004479\|Ga0062595_100331399	Not Available	1047	Open in IMG/M
3300005562\|Ga0058697_10383470	Not Available	692	Open in IMG/M
3300005981\|Ga0081538_10000728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35897	Open in IMG/M
3300005981\|Ga0081538_10042108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2887	Open in IMG/M
3300005981\|Ga0081538_10339885	Not Available	545	Open in IMG/M
3300006581\|Ga0074048_11327566	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300006847\|Ga0075431_100763192	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300006847\|Ga0075431_100929289	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300009147\|Ga0114129_10324651	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2045	Open in IMG/M
3300009147\|Ga0114129_10545600	Not Available	1508	Open in IMG/M
3300009156\|Ga0111538_10914002	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300009789\|Ga0126307_10338342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300009789\|Ga0126307_10666989	Not Available	839	Open in IMG/M
3300009789\|Ga0126307_11700615	Not Available	513	Open in IMG/M
3300009801\|Ga0105056_1033426	Not Available	676	Open in IMG/M
3300009808\|Ga0105071_1058895	Not Available	635	Open in IMG/M
3300009811\|Ga0105084_1061957	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300009815\|Ga0105070_1006556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1834	Open in IMG/M
3300009815\|Ga0105070_1020550	Not Available	1146	Open in IMG/M
3300009815\|Ga0105070_1063459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	696	Open in IMG/M
3300009817\|Ga0105062_1064293	Not Available	688	Open in IMG/M
3300009817\|Ga0105062_1066976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	676	Open in IMG/M
3300009837\|Ga0105058_1008629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1966	Open in IMG/M
3300009840\|Ga0126313_10871016	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	734	Open in IMG/M
3300010029\|Ga0105074_1106846	Not Available	534	Open in IMG/M
3300010037\|Ga0126304_10491144	Not Available	824	Open in IMG/M
3300010038\|Ga0126315_10816171	Not Available	615	Open in IMG/M
3300010041\|Ga0126312_10006838	All Organisms → cellular organisms → Bacteria	7661	Open in IMG/M
3300010042\|Ga0126314_10179405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1486	Open in IMG/M
3300010042\|Ga0126314_10972731	Not Available	629	Open in IMG/M
3300010044\|Ga0126310_11425299	Not Available	565	Open in IMG/M
3300010045\|Ga0126311_10578153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	887	Open in IMG/M
3300012199\|Ga0137383_10030468	All Organisms → cellular organisms → Bacteria	3784	Open in IMG/M
3300012204\|Ga0137374_10211885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1658	Open in IMG/M
3300012204\|Ga0137374_10918496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	641	Open in IMG/M
3300012204\|Ga0137374_11055127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	582	Open in IMG/M
3300012350\|Ga0137372_10273538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Quadrisphaera → unclassified Quadrisphaera → Quadrisphaera sp.	1319	Open in IMG/M
3300012350\|Ga0137372_10898987	Not Available	628	Open in IMG/M
3300012358\|Ga0137368_10080091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2608	Open in IMG/M
3300012358\|Ga0137368_10318195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1046	Open in IMG/M
3300012360\|Ga0137375_10382468	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300012360\|Ga0137375_11108093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	614	Open in IMG/M
3300014497\|Ga0182008_10150768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1166	Open in IMG/M
3300018075\|Ga0184632_10272969	All Organisms → cellular organisms → Bacteria → Terrabacteria group	735	Open in IMG/M
3300018076\|Ga0184609_10165744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1021	Open in IMG/M
3300018081\|Ga0184625_10451033	Not Available	659	Open in IMG/M
3300018081\|Ga0184625_10492386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	620	Open in IMG/M
3300018481\|Ga0190271_11854989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	714	Open in IMG/M
3300019259\|Ga0184646_1633906	Not Available	504	Open in IMG/M
3300019869\|Ga0193705_1055074	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300019875\|Ga0193701_1031104	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300020003\|Ga0193739_1015078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2020	Open in IMG/M
3300021073\|Ga0210378_10278495	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300022694\|Ga0222623_10032368	Not Available	1987	Open in IMG/M
3300025913\|Ga0207695_10425278	Not Available	1212	Open in IMG/M
3300025933\|Ga0207706_11725658	Not Available	503	Open in IMG/M
3300025972\|Ga0207668_10607546	Not Available	953	Open in IMG/M
3300026888\|Ga0209900_1012282	Not Available	662	Open in IMG/M
3300027056\|Ga0209879_1024086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1011	Open in IMG/M
3300027056\|Ga0209879_1063002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora gelatinilytica	593	Open in IMG/M
3300027277\|Ga0209846_1019648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1109	Open in IMG/M
3300027277\|Ga0209846_1067653	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300027332\|Ga0209861_1036339	Not Available	728	Open in IMG/M
3300027379\|Ga0209842_1030547	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300027490\|Ga0209899_1015536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1725	Open in IMG/M
3300027490\|Ga0209899_1064616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae → Thermogemmatispora → Thermogemmatispora onikobensis	739	Open in IMG/M
3300027809\|Ga0209574_10136201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. TRM90224	736	Open in IMG/M
3300027949\|Ga0209860_1003764	All Organisms → cellular organisms → Bacteria	2156	Open in IMG/M
3300027961\|Ga0209853_1016141	Not Available	2282	Open in IMG/M
3300027961\|Ga0209853_1053630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1109	Open in IMG/M
3300028589\|Ga0247818_11397786	Not Available	505	Open in IMG/M
3300028596\|Ga0247821_10866802	Not Available	599	Open in IMG/M
3300028597\|Ga0247820_10231716	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1187	Open in IMG/M
3300028704\|Ga0307321_1062183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300028710\|Ga0307322_10100071	Not Available	745	Open in IMG/M
3300028711\|Ga0307293_10131854	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300028711\|Ga0307293_10181166	Not Available	670	Open in IMG/M
3300028713\|Ga0307303_10078407	Not Available	734	Open in IMG/M
3300028714\|Ga0307309_10223618	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300028715\|Ga0307313_10189665	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300028715\|Ga0307313_10234180	Not Available	571	Open in IMG/M
3300028716\|Ga0307311_10047931	Not Available	1131	Open in IMG/M
3300028717\|Ga0307298_10069433	Not Available	980	Open in IMG/M
3300028721\|Ga0307315_10008223	All Organisms → cellular organisms → Bacteria	2564	Open in IMG/M
3300028722\|Ga0307319_10249325	Not Available	584	Open in IMG/M
3300028771\|Ga0307320_10050185	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
3300028791\|Ga0307290_10327864	Not Available	560	Open in IMG/M
3300028796\|Ga0307287_10025479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2087	Open in IMG/M
3300028812\|Ga0247825_10009894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6222	Open in IMG/M
3300028814\|Ga0307302_10270631	Not Available	834	Open in IMG/M
3300028819\|Ga0307296_10594957	Not Available	605	Open in IMG/M
3300028875\|Ga0307289_10298562	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	663	Open in IMG/M
3300028878\|Ga0307278_10062126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1687	Open in IMG/M
3300028878\|Ga0307278_10090353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1378	Open in IMG/M
3300030336\|Ga0247826_10043748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2435	Open in IMG/M
3300030510\|Ga0268243_1065892	Not Available	804	Open in IMG/M
3300030516\|Ga0268255_10095343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	900	Open in IMG/M
3300031548\|Ga0307408_101730025	Not Available	596	Open in IMG/M
3300031731\|Ga0307405_11868405	Not Available	535	Open in IMG/M
3300031824\|Ga0307413_10537742	Not Available	945	Open in IMG/M
3300031852\|Ga0307410_10273650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1322	Open in IMG/M
3300031852\|Ga0307410_10275447	Not Available	1318	Open in IMG/M
3300031852\|Ga0307410_11493485	Not Available	595	Open in IMG/M
3300031852\|Ga0307410_11527257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300031852\|Ga0307410_11725988	Not Available	555	Open in IMG/M
3300031903\|Ga0307407_10813093	Not Available	712	Open in IMG/M
3300031903\|Ga0307407_11668634	Not Available	507	Open in IMG/M
3300031911\|Ga0307412_10528547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	987	Open in IMG/M
3300031911\|Ga0307412_11626383	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031911\|Ga0307412_11707740	Not Available	577	Open in IMG/M
3300031911\|Ga0307412_11761429	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031995\|Ga0307409_100570961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1113	Open in IMG/M
3300032002\|Ga0307416_100649596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1139	Open in IMG/M
3300032002\|Ga0307416_102036082	Not Available	676	Open in IMG/M
3300032004\|Ga0307414_11486213	Not Available	630	Open in IMG/M
3300032005\|Ga0307411_11517461	Not Available	616	Open in IMG/M
3300032080\|Ga0326721_10663754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300032126\|Ga0307415_100047191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2898	Open in IMG/M
3300032126\|Ga0307415_100186509	Not Available	1633	Open in IMG/M
3300032126\|Ga0307415_101049412	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300032126\|Ga0307415_101393266	Not Available	667	Open in IMG/M
3300032126\|Ga0307415_101558639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	633	Open in IMG/M
3300032159\|Ga0268251_10281258	Not Available	683	Open in IMG/M
3300033550\|Ga0247829_10564946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	945	Open in IMG/M
3300034115\|Ga0364945_0259107	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	537	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.50%
Host-Associated	Host-Associated	31.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.99%
Plants	Host-Associated → Plants	31.50%
Aquatic	Environmental → Aquatic	5.51%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.98%
Phylloplane	Host-Associated → Plants → Phylloplane	3.15%
Sediment	Environmental → Aquatic → Sediment	3.94%
Roots	Host-Associated → Plants → Roots	2.36%
Freshwater	Environmental → Aquatic → Freshwater	1.57%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.41%
Sand	Environmental → Terrestrial → Soil → Sand	17.32%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.57%
Loam	Environmental → Terrestrial → Soil → Loam	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.41%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	17.32%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.72%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.57%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	18.90%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	17.32%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.66%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.15%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	3.15%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.36%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.57%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026888	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027332	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027949	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_24200032	3300000033	Soil	MNTLSEAGLADLAGVTEAEVRRLVELGVLIARDGAGPFLETDVPKVRLAT
F14TB_1007164561	3300001431	Soil	METDLGALSASELAELAGATTAAVARMVGLGVLVA
Ga0062595_1003313991	3300004479	Soil	MNGLSASELADLAGVTEAEVGRLVDLGVLVTRDGDGPFLAADAQKIR
Ga0058697_103834703	3300005562	Agave	MKELSASGLADLAGVTEVEVGRLVELGILVPRDGAGPFRETDVQKVRLA
Ga0081538_1000072839	3300005981	Tabebuia Heterophylla Rhizosphere	MKGLSAAGLADLAGVTEVEVERLVDLGILVPRDGGAGPFLETDVQKVRLAAAGER
Ga0081538_100421081	3300005981	Tabebuia Heterophylla Rhizosphere	MTRLSAARLADLAGVTAAEVERLVDLGVLVARDGGEPFL
Ga0081538_103398851	3300005981	Tabebuia Heterophylla Rhizosphere	MNGLSAARLADLAGVTAAEVERLVDLGVLVARDGGEPFLEIDVP
Ga0074048_113275662	3300006581	Soil	MNALSASELADLVGVTEAEVGRLVDFGVLVARPGAG
Ga0075431_1007631922	3300006847	Populus Rhizosphere	MNGLSASGLADLAGTTTAEVQRLVEFGILVARDGTD
Ga0075431_1009292892	3300006847	Populus Rhizosphere	MGGLSAAGLADLAGATEAEVARLVELGVLVAREGAGPFR
Ga0114129_103246514	3300009147	Populus Rhizosphere	MNALSASGLADLAGTTQAEVERLVELGILVARPGPAPFLASDVQKVRLAE
Ga0114129_105456001	3300009147	Populus Rhizosphere	MNGLSASELADRAGVTEAEVQRLVELGILVARDGDQP
Ga0111538_109140022	3300009156	Populus Rhizosphere	MTGLSASGLAGLAGVTVAEVQRLMEFGVLVARDGSDPFLESDVPKVRLA
Ga0126307_103383423	3300009789	Serpentine Soil	MNGLSAQGLADLAGVTEAEVRRLVDLGILVTRDGADPFLAADV
Ga0126307_106669892	3300009789	Serpentine Soil	MNALSAAGLADLAGVTEAEVQRLVDLGILVTRDGADPFLETDVQKVRPATACEQ
Ga0126307_117006152	3300009789	Serpentine Soil	MNALSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQ
Ga0105056_10334262	3300009801	Groundwater Sand	MDSDMEPLSAAGLAELAGATVAEVERLVALGILTPRDGARPFLATDVQ
Ga0105071_10588951	3300009808	Groundwater Sand	MEPLSAAGLAELAGATEAEVEHMVDLGILVPRDGADPFL
Ga0105084_10619571	3300009811	Groundwater Sand	MKTLAASELAELVGVTEAEVQRLVDLGILVARDGADPFLETDAPKVRL
Ga0105070_10065561	3300009815	Groundwater Sand	MEPKLAPLSTSELAELAGATELEVDRMVGLGILVSRDRSRPFLA
Ga0105070_10205502	3300009815	Groundwater Sand	METQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLATDVQK
Ga0105070_10634591	3300009815	Groundwater Sand	MNGLSASGLADLAGTTTVEVQRLVELGILVARDGPDPFLDTDVQKVR
Ga0105062_10642931	3300009817	Groundwater Sand	MEPLSAAGLAELAGATEAEVEHMVDLEILVPRDGAGPFLATDVQK
Ga0105062_10669761	3300009817	Groundwater Sand	MKGLSAAGLADLAGTTAAEVQRLVDLGILVARDGAGPFLETDVQKVRLAAAC
Ga0105058_10086293	3300009837	Groundwater Sand	METQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLAT
Ga0126313_108710161	3300009840	Serpentine Soil	MNGLSASELANLVGVTEVEVERLVELGVLVARDGAGPFLER
Ga0105074_11068462	3300010029	Groundwater Sand	MNVLSAAGLADLAGVTEAEVERMVDLGLLVARDGAGPFLE
Ga0126304_104911441	3300010037	Serpentine Soil	MNGLSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQK
Ga0126315_108161711	3300010038	Serpentine Soil	MNGLSASELADLAGVTAAEVDRLVALGILVARESGGPFLETDVQKVRLGM
Ga0126312_100068381	3300010041	Serpentine Soil	MKELSAAELADLAGVTEAEVRRLVDLGILVTRHGAAPF
Ga0126314_101794052	3300010042	Serpentine Soil	MKGLSAAELADLAGTTAAEVQQLVGLGILVARDGANPFLA
Ga0126314_109727311	3300010042	Serpentine Soil	MNALSASGLADLAGVTEAEVERMVDLGVLVARDGDGPFLAA
Ga0126310_114252991	3300010044	Serpentine Soil	MNGLSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQKVR
Ga0126311_105781531	3300010045	Serpentine Soil	MDGLSVSGLADLAGTTAAEVERLVQLGVLAARDGAGPFLESDVPKV
Ga0137383_100304685	3300012199	Vadose Zone Soil	MNGLSASELADLVGVTAVEVDRLVDLGILVPRDGAG
Ga0137374_102118851	3300012204	Vadose Zone Soil	MNGLSASGLADLAGVTEAEVQRLVDLGILVARDGAGPFRETDAQKV
Ga0137374_109184961	3300012204	Vadose Zone Soil	MKPQWDDSGMNGLSASELADLVGVTAVEVDRLVDLGILVPRDGAGPFLETDVQKVRL
Ga0137374_110551272	3300012204	Vadose Zone Soil	MDTEMRALSASELADLVGVTKAEVDRLVGLGILVARDGAGPFLETDVQK
Ga0137372_102735383	3300012350	Vadose Zone Soil	MNALSASGLADLAGVTEVEIQRLVDLGVLVARDGGGPFLATDVQKVRLA
Ga0137372_108989872	3300012350	Vadose Zone Soil	MNALSAAGLADLAGVTEAEVERLVELGILVARDGAGPFLETDVQKVR
Ga0137368_100800911	3300012358	Vadose Zone Soil	METEIGALSASELADLVGVTAVEVERLVGLGVLVARDGAGPFLET
Ga0137368_103181951	3300012358	Vadose Zone Soil	MERDMGPLSAAGLAELAGATEAEVERMIDLGILVPRDGAGPFLA
Ga0137375_103824681	3300012360	Vadose Zone Soil	MNALSAAGLADLAGVTEAEVQRLVDLGILVARDGADP
Ga0137375_111080931	3300012360	Vadose Zone Soil	MDTEMRALSASELADLVGVTKAEVDRLVGLGILVARDGAGPFL
Ga0182008_101507683	3300014497	Rhizosphere	MNGLSAQGLADLAGVTEAEVRRLVDLGILVARDGA
Ga0184632_102729692	3300018075	Groundwater Sediment	MNALSASGLADLAGTTQAEVDRLVELGILVARPGPAP
Ga0184609_101657442	3300018076	Groundwater Sediment	MKGLSASGLADLAGTTAAEVQRLVDLGILVARDGAGPFLETDVQ
Ga0184625_104510331	3300018081	Groundwater Sediment	MEALSASALADLAGTTAAEVQRMVDLGVLVARDDAGPFRATDVQKVRIAA
Ga0184625_104923861	3300018081	Groundwater Sediment	MNGLSASGLADLAGTTAAEVQRLVDLGILVARDGTDPFLETDVQKVRLA
Ga0190271_118549892	3300018481	Soil	MNGLSASELADLAGVTEAEVERLVDLGILEARDGAD
Ga0184646_16339061	3300019259	Groundwater Sediment	MDSDMEPLSAAGLAELAGATEAEVERMVTLGILVPRDGAAPFLATDVQK
Ga0193705_10550741	3300019869	Soil	VKGLSASALADLAGVGPAEVERLVELGILVARDGP
Ga0193701_10311041	3300019875	Soil	MNALSAAGLADLAGVTQAEVERLADLGVLVARDGAGPFLESDVQKVRLAAA
Ga0193739_10150782	3300020003	Soil	MNGLSASGLADLAGTTAAEVERMVDLGILVARDGVDPFLE
Ga0210378_102784952	3300021073	Groundwater Sediment	MNGLSASGLADLAGTTAAEVERMVDLGILVARGGVDPFLDTDVQKVRL
Ga0222623_100323682	3300022694	Groundwater Sediment	MNALSAAGLADLAGVTEAEVGRLVDLGILVARDGAGPFLAADVQKVRLA
Ga0207695_104252782	3300025913	Corn Rhizosphere	MNGLSAAALADLAGVTKAEVGRLVDLGVLVARPGAGPFLE
Ga0207706_117256581	3300025933	Corn Rhizosphere	MNALSASGLADLAGTTEAEVQRLVDLGILAARDGAGPFLE
Ga0207668_106075462	3300025972	Switchgrass Rhizosphere	MKELSAAGLADLAGVTEAEVQRLVDLGILVARDGDGPFLEADAQ
Ga0209900_10122821	3300026888	Groundwater Sand	VEPLSAAGLAELAGATVAEVERLVALGILTPRDGARPFLATDVQKIRLAKAC
Ga0209879_10240862	3300027056	Groundwater Sand	MKGLSASGLADLAGTTAAEVQRLVDLGILVARDGADPFLETDVQKVRLAAACE
Ga0209879_10630022	3300027056	Groundwater Sand	METDPGALSATELAELAGATKAEVERMVGLGILVARDGAGPF
Ga0209846_10196481	3300027277	Groundwater Sand	METQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLATDVQRVRPDGTRRADQ
Ga0209846_10676531	3300027277	Groundwater Sand	MNGLSASGLADLAGTTTAEVQRLVELGILVARDGTDPFLDTDVQK
Ga0209861_10363391	3300027332	Groundwater Sand	MEPLSAAGLAELAGATEAEVEHMVDLGILVPRDGADP
Ga0209842_10305472	3300027379	Groundwater Sand	MEPDVGALSASELAELAGATEAEVERLVELGILVARAGAGPFLETDV
Ga0209899_10155361	3300027490	Groundwater Sand	MGTQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLATDVQK
Ga0209899_10646161	3300027490	Groundwater Sand	MNGLSAAGLADLAGVTEAEVGRLVELGILVARDGTSPFLAADAQ
Ga0209574_101362012	3300027809	Agave	MDGLSASALADLAGTTAAEVQRLADLGILVARDRAGPER
Ga0209860_10037641	3300027949	Groundwater Sand	VEPLSAAGLAELAGATVAEVERLVALGILTPRDGARPFLATDVQK
Ga0209853_10161411	3300027961	Groundwater Sand	MKTLSAAGLADLAGTTVAEVQRLVDLGILVARDGADPFLETDAPKVRLA
Ga0209853_10536303	3300027961	Groundwater Sand	MKTLSASELAELVGVTEAEVQRLVDLGILVARDGADPFLETDAPKVRLA
Ga0247818_113977861	3300028589	Soil	MNALSASGLADLAGTTQAEVDRLVELGILVARPGPAPFLASDVQKV
Ga0247821_108668021	3300028596	Soil	MNGLSAAALADLAGVTEAEVGRLVDFGVLVARPGAGPFLE
Ga0247820_102317161	3300028597	Soil	MNALSAAGLADLAGVTEAEVERMVDLGILVTRDGAGPFLETDVQK
Ga0307321_10621831	3300028704	Soil	MNGLSAQGLADLAGVTEAEVQRLVDLGVLVTRDGAGPFRETDVQRVRCWSRGRRPRV
Ga0307322_101000711	3300028710	Soil	MNRLSASELADLAGTKAAEVARLVELGILVPRDGPDPFLETDVQKVRLAAAC
Ga0307293_101318542	3300028711	Soil	MNGLSASELADLVGVTEAEVERLAELGILVARDGAGPFLERDVPKVR
Ga0307293_101811661	3300028711	Soil	MNGLSAAALADLAGVTEAEVGRLVDLDVLVARPGAG
Ga0307303_100784071	3300028713	Soil	MNGLSASELADLVGVTEAEVERLAELGILVARDGAGPFLE
Ga0307309_102236182	3300028714	Soil	VKGLSASALADLAGVGPAEVERLVELGILVARDGPDPF
Ga0307313_101896652	3300028715	Soil	MNALSAAGLADLAGVTQAEVERLADLGVLVARDGAGPFLESDVQKVRLAAAC
Ga0307313_102341802	3300028715	Soil	MNGLSAQGLADLAGVTEAEIRRLVDLGILVARDGAGPFLETDVQKVR
Ga0307311_100479312	3300028716	Soil	MNGLSAAALTDLAGVTEAEVWRLVNFGVLVARPGA
Ga0307298_100694332	3300028717	Soil	MNGLSAAALADLAGVTEAEVWRLVDFGVLVARPGAGPFLETDVQKVRLATA
Ga0307315_100082231	3300028721	Soil	MNGLSASELAGLAGVTEADVGRLVDLGVLVARDGDGPFLETDAQKVRLVTACEQ
Ga0307319_102493251	3300028722	Soil	MEALSASALADLAGTTAAEVQRMVDLGILVTRDGTGPF
Ga0307320_100501851	3300028771	Soil	MNALSAAGLADLAGVTEAEVQQMVDLGILVARAGPGPFLETDAQK
Ga0307290_103278642	3300028791	Soil	MNGLSAAELADLAGVTEAEVQRLVALGILVARDGAGPFRET
Ga0307287_100254793	3300028796	Soil	MDGLSVSGLADLAGTTAAEVERLVQLGVLTARDGAGPF
Ga0247825_100098941	3300028812	Soil	MGGLSAAGLADLAGATVAEVERLVALGVLVAREGAGPFRESDVPK
Ga0307302_102706313	3300028814	Soil	MNALSAAGLADLAGTTEAEVERLVDLGILVTRDGADPFL
Ga0307296_105949572	3300028819	Soil	MNRLSASELADLAGTKAAEVARLVELGILVPRDGPDPFLETDVQKVRLA
Ga0307289_102985622	3300028875	Soil	MNALSAAGLADLAGVTEAEVERMVDLGILVTRDGAGPFLETDVQKVRLATACE
Ga0307278_100621262	3300028878	Soil	MNALSAAGLADLAGVTEAEVQRLVDLGILVTRDGADPFLAADVQ
Ga0307278_100903533	3300028878	Soil	MNGLSASELADLVGVTEAEVERLAELGILVARDGAGPFLERDV
Ga0247826_100437482	3300030336	Soil	MDGLSVSGLADLAGATEAEVERLVALGVLVAREGAGPFRESDVPKVRLA
Ga0268243_10658921	3300030510	Soil	MNGLSASELADLAGVTEAQVQRLVGLGILVPRDGA
Ga0268255_100953431	3300030516	Agave	MDGLSAADLADLAGTTVAEVGRLVDLGVLVARDGAGPFLETDAQK
Ga0307408_1017300251	3300031548	Rhizosphere	MDGLSVSGLADLAGTTAAEVERLVQLGVLAARDGAGPFLESDVPKVRL
Ga0307405_118684051	3300031731	Rhizosphere	MNGLSASELADLAGVTEAEVERLAGLGILEARDDAGPFLETDA
Ga0307413_105377421	3300031824	Rhizosphere	MNGLSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQ
Ga0307410_102736501	3300031852	Rhizosphere	MIGGMNGLSASELADLAGVTEAEIRRLVDLGILVARDGAGP
Ga0307410_102754471	3300031852	Rhizosphere	MDGLSVSGLADLAGTTAAEVERLVQLGVLAVRDGAGPFLEGDVPK
Ga0307410_114934852	3300031852	Rhizosphere	MKKLSASALADLAGVTEVEVARLVELGILVARDGAGQIA
Ga0307410_115272571	3300031852	Rhizosphere	MKGLSAAGLADLAGVTEAEVARLVDLGILVPRDDAGPFLE
Ga0307410_117259881	3300031852	Rhizosphere	MKGLSASELADLAGVTEAEVARLVDLGILVARDGDQPFLAADAQ
Ga0307407_108130931	3300031903	Rhizosphere	MNGLSASELADLAGVTEAEVRRMVDLGIVEARDGADPFVE
Ga0307407_116686341	3300031903	Rhizosphere	MNALSAAGLADLAGVTEAEVGRLVELGILVARDGPGPFLVADAQKVRL
Ga0307412_105285472	3300031911	Rhizosphere	MNELSASELADLVGVTEAEVARLVDLGILVPRDDAGPFRA
Ga0307412_116263831	3300031911	Rhizosphere	MTGLSAAGLADLAGVTEGEVERLADLGILAARDGTGPF
Ga0307412_117077401	3300031911	Rhizosphere	MNGLSASELADLAGVTEAEIRRLVDLGILVARDGAGPFL
Ga0307412_117614291	3300031911	Rhizosphere	MDGLSAAALADLAGVTEVEVERLVGLGILVARDGAGPFLER
Ga0307409_1005709611	3300031995	Rhizosphere	MNALSAAGLADLAGVTEAEVERLVELGILVPWDGAGPFRET
Ga0307416_1006495963	3300032002	Rhizosphere	MNGLSAQGLADLAGVTEAEVERMVDLGILVARDGAGPFLET
Ga0307416_1020360822	3300032002	Rhizosphere	MEREPGPLSASELADLAGVTEAEVAPMVGVGVLLPREG
Ga0307414_114862132	3300032004	Rhizosphere	MNGLSAQGLADLAGVTEAEVRRLVDLGILVARDGAGPFLETDVQKV
Ga0307411_115174612	3300032005	Rhizosphere	MNGLSASELADLAGVTEAEVRRMVDLGILEARDGA
Ga0326721_106637542	3300032080	Soil	MNGLSASELADLAGVTEAEVRRLVDLGILEARDGA
Ga0307415_1000471911	3300032126	Rhizosphere	MDGLSAAAPADLAGVTEAEVQRLADLGILAPRDGTDPFLA
Ga0307415_1001865092	3300032126	Rhizosphere	MNGLSASELADLAGVTEAEVERLAGLGILEARDGAGPFLETDAKKV
Ga0307415_1010494122	3300032126	Rhizosphere	MNGLSAAGLADLAGVTEAEVARLVDLGVLVARDGVGPFLEAD
Ga0307415_1013932661	3300032126	Rhizosphere	MKGLSAAGLADLAGVTEAEVARLVDLGILVPRDDAG
Ga0307415_1015586392	3300032126	Rhizosphere	VTGAGMDGLSAAAPADLAGVTEAEVQRLADLGILAPRDGTDPFLA
Ga0268251_102812582	3300032159	Agave	MKGLSAAGLADLAGVTEAEVRRLVDLGVLVAREGVGPFL
Ga0247829_105649461	3300033550	Soil	MDGLSVSGLADLAGATEAEVERLVELGVLVAREGAGPFRESDVPKV
Ga0364945_0259107_1_141	3300034115	Sediment	MNALSAAGLADLAGVTEAEVERMVDLGILVARDGAGPFLETDVQKVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066248

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences