Metagenome / Metatranscriptome Family F066128

Basic Information
Family ID	F066128
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	41 residues
Representative Sequence	LIAIIEVSDDEKKAEAKIKTKSKTLSQKVDSDSNQLPIIVI
Number of Associated Samples	102
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	25.60 %
% of genes near scaffold ends (potentially truncated)	77.95 %
% of genes from short scaffolds (< 2000 bps)	88.19 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (51.181 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (16.535 % of family members)
Environment Ontology (ENVO)	Unclassified (69.291 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (85.827 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1DelMOWin2010_1000203514 2DelMOWin2010_101966001 3LPjun08P41300mDRAFT_10136532 4SI47jul10_100mDRAFT_10374331 5SI34jun09_100mDRAFT_10292301 6LP_A_09_P04_500DRAFT_10373982 7LPaug09P202000mDRAFT_10006211 8JGI20155J14468_101865321 9GOS2226_10026853 10GOS2224_10236802 11GOS2250_10392522 12GOS2229_10587803 13NAP2_10836812 14Ga0066611_100865751 15Ga0066830_100552732 16Ga0066825_100701192 17Ga0066843_100311101 18Ga0066837_101977702 19Ga0066834_100190853 20Ga0066834_101052852 21Ga0008649_102189311 22Ga0008649_102980482 23Ga0008649_103655232 24Ga0070742_102143542 25Ga0066381_100539932 26Ga0066381_101828022 27Ga0066379_100061773 28Ga0066379_101280902 29Ga0075478_101274842 30Ga0075462_101084312 31Ga0066836_101092103 32Ga0066836_101429602 33Ga0066836_108385331 34Ga0075447_102381191 35Ga0075445_101792752 36Ga0068469_11862892 37Ga0068472_102866701 38Ga0068497_14242941 39Ga0068476_14117331 40Ga0068477_14657022 41Ga0068493_105301322 42Ga0099696_11052792 43Ga0075448_101528702 44Ga0099957_15262541 45Ga0101445_11517515 46Ga0066376_102200021 47Ga0066372_104679331 48Ga0066372_106685511 49Ga0075444_103370032 50Ga0075444_104040821 51Ga0075463_101999542 52Ga0105020_100100419 53Ga0105020_10760001 54Ga0105020_14369042 55Ga0105020_14756351 56Ga0105348_10299593 57Ga0105352_11546541 58Ga0115650_13916952 59Ga0115566_101713532 60Ga0117902_12958862 61Ga0117925_10678682 62Ga0118730_13039181 63Ga0118730_13686222 64Ga0102884_10952861 65Ga0115551_12875032 66Ga0115555_14189002 67Ga0138258_14553732 68Ga0138259_10817333 69Ga0171648_1289191 70Ga0181595_101806102 71Ga0211492_10638492 72Ga0211515_10005233 73Ga0211623_103728711 74Ga0211514_100815411 75Ga0211514_103724112 76Ga0206678_100871243 77Ga0206691_12550771 78Ga0213868_100730403 79Ga0213868_102465661 80Ga0206685_101446052 81Ga0222719_102601762 82Ga0233427_104355821 83Ga0228686_10345931 84Ga0228638_10678672 85Ga0228659_10163561 86Ga0228659_10515092 87Ga0228672_11873732 88Ga0244777_103140881 89Ga0209685_10340851 90Ga0209249_10745261 91Ga0209047_11675932 92Ga0209425_105535362 93Ga0208127_11170182 94Ga0208127_11615162 95Ga0247581_10168472 96Ga0247594_10049284 97Ga0247594_10712772 98Ga0247568_10678982 99Ga0247603_10426772 100Ga0247602_10697352 101Ga0228641_10911442 102Ga0247592_10192023 103Ga0208308_10505592 104Ga0209752_10774071 105Ga0209752_10829992 106Ga0228674_11247982 107Ga0247584_10192423 108Ga0228619_10792212 109Ga0228639_11103252 110Ga0257109_10067921 111Ga0257112_102086702 112Ga0302123_103816831 113Ga0307986_103989312 114Ga0315322_101376872 115Ga0315326_103253011 116Ga0315326_104443982 117Ga0315319_104965522 118Ga0315319_105360672 119Ga0315324_102334951 120Ga0315330_101146041 121Ga0315330_106445631 122Ga0315321_105052891 123Ga0315333_100935512 124Ga0315333_100951121 125Ga0315333_104554342 126Ga0315339_10241361 127Ga0315334_118265312
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1DelMOWin2010_1000203514 2DelMOWin2010_101966001 3LPjun08P41300mDRAFT_10136532 4SI47jul10_100mDRAFT_10374331 5GOS2224_10236802 6Ga0066830_100552732 7Ga0066843_100311101 8Ga0070742_102143542 9Ga0075447_102381191 10Ga0075445_101792752 11Ga0115650_13916952 12Ga0181595_101806102 13Ga0211514_100815411 14Ga0209685_10340851 15Ga0315326_103253011
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40. 1Ga0075463_101999542 2Ga0066834_100190853 3Ga0066834_101052852 4Ga0008649_102189311 5Ga0008649_102980482 6Ga0070742_102143542 7Ga0066836_101429602 8Ga0068472_102866701 9Ga0068477_14657022 10Ga0075448_101528702 11Ga0066376_102200021 12Ga0075444_103370032 13Ga0105020_100100419 14Ga0115650_13916952 15Ga0138258_14553732 16Ga0181595_101806102 17Ga0209249_10745261 18Ga0307986_103989312 19Ga0315322_101376872
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.80% β-sheet: 0.00% Coil/Unstructured: 94.20%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00113	Enolase_C	62.20
PF01595	CNNM	14.17
PF03952	Enolase_N	12.60
PF01556	DnaJ_C	4.72
PF03471	CorC_HlyC	2.36
PF02696	SelO	0.79
PF01612	DNA_pol_A_exo1	0.79
PF08264	Anticodon_1	0.79
PF02666	PS_Dcarbxylase	0.79
PF03602	Cons_hypoth95	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0148	Enolase	Carbohydrate transport and metabolism [G]	74.80
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	4.72
COG0397	Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O)	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG0688	Phosphatidylserine decarboxylase	Lipid transport and metabolism [I]	0.79
COG0742	16S rRNA G966 N2-methylase RsmD	Translation, ribosomal structure and biogenesis [J]	0.79
COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	Translation, ribosomal structure and biogenesis [J]	0.79
COG2242	Precorrin-6B methylase 2	Coenzyme transport and metabolism [H]	0.79
COG2265	tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family	Translation, ribosomal structure and biogenesis [J]	0.79
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.79

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.18 %
Unclassified	root	N/A	48.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.18 %
Unclassified	root	N/A	48.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.18 %
Unclassified	root	N/A	48.82 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.41 %
Unclassified	root	N/A	48.82 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	24.41 %
Unclassified	root	N/A	48.82 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	16.54 %
Unclassified	root	N/A	48.82 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Candidatus Pseudothioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Pseudothioglobus	7.87 %
Candidatus Thioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	4.72 %
gamma proteobacterium SCGC AAA076-F14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-F14	0.79 %
sulfur-oxidizing symbionts	clade	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts	3.94 %
Unclassified	root	N/A	48.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Pseudothioglobus singularis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Pseudothioglobus → Candidatus Pseudothioglobus singularis	7.87 %
Candidatus Ruthia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia	3.94 %
Candidatus Thioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	4.72 %
gamma proteobacterium SCGC AAA076-F14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-F14	0.79 %
Unclassified	root	N/A	48.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Pseudothioglobus singularis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Pseudothioglobus → Candidatus Pseudothioglobus singularis	7.87 %
Candidatus Ruthia magnifica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia → Candidatus Ruthia magnifica	2.36 %
Candidatus Thioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	4.72 %
gamma proteobacterium SCGC AAA076-F14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → gamma proteobacterium SCGC AAA076-F14	0.79 %
Unclassified	root	N/A	48.82 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022933\|Ga0233427_10435582	Not Available	522	Open in IMG/M
3300000117\|DelMOWin2010_c10002035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia → Candidatus Ruthia magnifica	12879	Open in IMG/M
3300000117\|DelMOWin2010_c10196600	Not Available	624	Open in IMG/M
3300000141\|LPjun08P41300mDRAFT_c1013653	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300000148\|SI47jul10_100mDRAFT_c1037433	Not Available	678	Open in IMG/M
3300000254\|SI34jun09_100mDRAFT_1029230	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300000264\|LP_A_09_P04_500DRAFT_1037398	Not Available	577	Open in IMG/M
3300000323\|LPaug09P202000mDRAFT_1000621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia → Candidatus Ruthia magnifica	8843	Open in IMG/M
3300001354\|JGI20155J14468_10186532	Not Available	633	Open in IMG/M
3300001943\|GOS2226_1002685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1745	Open in IMG/M

Showing 1 to 10 of 125 entries

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	25.98%
Inlet	Environmental → Aquatic → Marine → Inlet	0.79%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	23.62%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.94%
Oceanic	Environmental → Aquatic → Marine → Oceanic	28.35%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.36%
Unclassified	Environmental → Aquatic → Marine → Unclassified	14.96%

Habitat	Taxonomy	Distribution
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	6.30%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.36%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.36%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.79%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	25.98%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	20.47%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	19.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	14.96%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.94%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.36%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.36%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.79%
Estuarine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Estuarine	0.79%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.79%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	16.54%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	9.45%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	8.66%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	7.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	6.30%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	2.36%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.57%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.57%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.79%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.79%
Methane Seep Mesocosm	Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm	1.57%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.36%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.57%
Polar Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine	1.57%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.79%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	14.96%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	11.81%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.57%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.79%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000141	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300m	Environmental	Open in IMG/M
3300000148	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100m	Environmental	Open in IMG/M
3300000254	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 100m	Environmental	Open in IMG/M
3300000264	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_500	Environmental	Open in IMG/M
3300000323	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000m	Environmental	Open in IMG/M
3300001354	Pelagic Microbial community sample from North Sea - COGITO 998_met_05	Environmental	Open in IMG/M
3300001943	Marine microbial communities from Cape May, New Jersey, USA - GS010	Environmental	Open in IMG/M
3300001952	Marine microbial communities from Newport Harbor, Rhode Island, USA - GS008	Environmental	Open in IMG/M
3300001957	Marine microbial communities from Wolf Island, Equador - GS035	Environmental	Open in IMG/M

Showing 1 to 10 of 102 entries

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_1000203514	3300000117	Marine	LIAIIEVSDDEKKAEAKINTKSKTLSQKVDSDSNQLPIIVIEIPF*
DelMOWin2010_101966001	3300000117	Marine	LSAIIEVSDAEKNAEAIIRIKSIKLSQKVDSDSNQ
LPjun08P41300mDRAFT_10136532	3300000141	Marine	IAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNKLPIFIQ*
SI47jul10_100mDRAFT_10374331	3300000148	Marine	DAEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEXIF*
SI34jun09_100mDRAFT_10292301	3300000254	Marine	LIAIIDVSDAEKKAEARIRTKSKTLSQKVDSDSN*
LP_A_09_P04_500DRAFT_10373982	3300000264	Marine	DAEXKAEAKIRTKSKTLSQKVDSDSNQLPLIINELIF*
LPaug09P202000mDRAFT_10006211	3300000323	Marine	EVSVPEKKAEARIRAKSKTLSQKVDSDSNKLPIFIQ*
JGI20155J14468_101865321	3300001354	Pelagic Marine	LSAIIEVSDAEKNAEAIIRIKSIKLSQKVDSDSNQLPKIV
GOS2226_10026853	3300001943	Marine	LIAIIEVSDDEKKAEAKIKTKSKTLSQKVDSDSNQLPIIVIEILF*
GOS2224_10236802	3300001952	Marine	LIAIIEVSDDEKKAEAKIKTKSKTLSQKVDSDSN*
GOS2250_10392522	3300001957	Marine	LIAIIEVSDDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVINVLF*
GOS2229_10587803	3300001963	Marine	LIAIIEVSDDEKKAEAKIKTNSKTLSQKVDSDSNQLPIIVIEMPF*
NAP2_10836812	3300003476	Estuarine	LIAIIEVSDDEKKAEANIKMNSKTLSQKVDSDSNQLPVIVIDVLF*
Ga0066611_100865751	3300004277	Marine	LDLESIAIDAIIEVSDAEKNAEAIIRIKSIKLSQKVDSDSNQ*
Ga0066830_100552732	3300005433	Marine	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIIVIKLLFKPQIKLKLNN*
Ga0066825_100701192	3300005510	Marine	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPILVIEILF*
Ga0066843_100311101	3300005551	Marine	LIAIIDVSELEKNAETRIKAKSKTLSQKVDSDSNQITIHISCY
Ga0066837_101977702	3300005593	Marine	AEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEFIF*
Ga0066834_100190853	3300005596	Marine	AIIDVSELEKKAETRIRAKSETLSQKVDSDSNQITIIISNYLF*
Ga0066834_101052852	3300005596	Marine	LIAIIDVSELEKNAETRIKAKSKTLSQKVDSDSNQITIHISC
Ga0008649_102189311	3300005838	Marine	LSAIIEVSDAEKNAEAIIRIKSIKLSQKVDSDSNQLPKIVN
Ga0008649_102980482	3300005838	Marine	YRLIAIIDVSDAEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEFIF*
Ga0008649_103655232	3300005838	Marine	RYRLIAIIDVSDAEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEFIF*
Ga0070742_102143542	3300005942	Estuarine	IAIDAIIEVSDAEKKADAIISKNSKTLSQKVDSDSNQSP*
Ga0066381_100539932	3300005945	Marine	VSVPEKKAEARIRAKSKTLSQKVDSDSNQLPIFIQ*
Ga0066381_101828022	3300005945	Marine	FIAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNQLTIFIQ*
Ga0066379_100061773	3300005951	Marine	LRAIIEVSDAEKKAEAKIKMKSKTLSQKVDSDSNQLPILVIERLF*
Ga0066379_101280902	3300005951	Marine	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPILV
Ga0075478_101274842	3300006026	Aqueous	LIAIIEVSDDEKKAEAKIKTKSKTLSQKVDSDSNQLPIIVIEMPF*
Ga0075462_101084312	3300006027	Aqueous	LIAIIEVSDDEKKAEAKIKTKSKTLSQKVDSDSNQLPIIVIEIPF*
Ga0066836_101092103	3300006166	Marine	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIIVIELLF*
Ga0066836_101429602	3300006166	Marine	EVSDAEKKAEAKIKKKSKTLSQKVDSDSNQVPIIVNENIF*
Ga0066836_108385331	3300006166	Marine	EKKAEAKIKKKSKTLSQKVDSDSNQVPIIVNEILF*
Ga0075447_102381191	3300006191	Marine	FNAIIEVSEAEKKAEARISINSKKLSQKVESDSN*
Ga0075445_101792752	3300006193	Marine	LGDSDSMIIEVSDAEKKAEARISTNSKTLSQKVESDSN*
Ga0068469_11862892	3300006306	Marine	SVDNFIAIIEVSVLEKKAEARIRAKSKTLSQKVDSDSNQLTILIQ*
Ga0068472_102866701	3300006313	Marine	SAQKPEKKAEARIRAKSKTLSQKVDSDSNQLPIFIQ*
Ga0068497_14242941	3300006323	Marine	LDDNGIAIIEVSVPEKKAEAKIRAKSKTLSQKVDSDSNQLPILIQ*
Ga0068476_14117331	3300006324	Marine	LGDNGIAIIEVSVLEKKAEAKIRAKSKTLSQKVDSDSNQLPIFIQ*
Ga0068477_14657022	3300006326	Marine	FLGDSDLLIIAVSVPEKKAEARIRANSKTLSQKVDSDSNQLPIFIQ*
Ga0068493_105301322	3300006341	Marine	AIIEVSVPEKKAEAKIRAKSKTLSQKVDSDSNQLPILIQ*
Ga0099696_11052792	3300006346	Marine	VSVPEKKAEAKIRAKSKTLSQKVDSDSNQLPILIQ*
Ga0075448_101528702	3300006352	Marine	FLSSRFLGDSDSMIIEVSDAEKKAEARISTNSKTLSQKVESDSN*
Ga0099957_15262541	3300006414	Marine	FSGDNGIAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNQLPIFIQ*
Ga0101445_11517515	3300006643	Marine Surface Water	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIFIQ*
Ga0066376_102200021	3300006900	Marine	DNGIAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNQLPIFIQ*
Ga0066372_104679331	3300006902	Marine	IIEVSVPEKKAEAKIRAKSKTLSQKVDSDSNQLPILIQ*
Ga0066372_106685511	3300006902	Marine	DDNGIAIIEVSVLEKKAEARIRAKSKTLSQKVDSDSNQLTVFIQ*
Ga0075444_103370032	3300006947	Marine	EAITIHAIIEVSEAEKKAEARISTNSKTLSQKVESDSN*
Ga0075444_104040821	3300006947	Marine	FIAIIEVSEAEKKAEARISTNSKTLSQKVESDSN*
Ga0075463_101999542	3300007236	Aqueous	LIAIIEVSDDEKKAEAKIKTKSKTLSQKVDSDSNQLPIIVI
Ga0105020_100100419	3300007514	Marine	LIAIIEVSDAEKKAEANIKKNSKTLSQKVDSDSNQLPINSQ*
Ga0105020_10760001	3300007514	Marine	AIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIIVIKLLF*
Ga0105020_14369042	3300007514	Marine	RFIAIIEVSVLEKKAEARIRAKSKTLSQKVDNDSN*
Ga0105020_14756351	3300007514	Marine	AIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIIVIELLF*
Ga0105348_10299593	3300008223	Methane Seep Mesocosm	AIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNKLPIFIQ*
Ga0105352_11546541	3300008225	Methane Seep Mesocosm	AEKKAEARIRMKSKTLSQKVDSDSNQLPIIINEFLF*
Ga0115650_13916952	3300008954	Marine	RLIAIIDVSEPEKKAEASISPNRVILSQKVESDSNQLLTCV*
Ga0115566_101713532	3300009071	Pelagic Marine	LIAIIEVSDDEKKAEAKIKTNSKTLSQKVDSDSNHLPIIVIEMPF*
Ga0117902_12958862	3300009104	Marine	SVLEKKAEARMRAKSKTLSQKVDSDSNQLPILIQ*
Ga0117925_10678682	3300009110	Marine	MAIIEVSVLEKKAEARIRTKSKTLSQKVDSDSNQLPIFIQ*
Ga0118730_13039181	3300009132	Marine	FIAIIEVSVLEKKAEARIRTKSKTLSQKVDSDSNQLPIFVQ*
Ga0118730_13686222	3300009132	Marine	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPVLVIELLF*
Ga0102884_10952861	3300009141	Estuarine	AIIEVSDAEKKADAIISKNSKTLSQKVDSDSNQSP*
Ga0115551_12875032	3300009193	Pelagic Marine	LIAIIEVSDDEKKAEAKIKTNSKTLSQKGDSDSNQLPIIVIEIPF*
Ga0115555_14189002	3300009476	Pelagic Marine	LIAIIEVSDDEKKAEAKINTKSKTLSQKVDSDSNQLPIIVIEMPF*
Ga0138258_14553732	3300012413	Polar Marine	RFNAIIEVSEAEKKAEARISINSKKLSQKVESDSN*
Ga0138259_10817333	3300012416	Polar Marine	FNAIIEVSEAEKKAEARISTNSKTLSQKVESDSN*
Ga0171648_1289191	3300013108	Marine	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSNSNQLPIIVIELLF*
Ga0181595_101806102	3300020053	Salt Marsh	IAIIDVSVEEKKAEASIKLNSKILSQKVDSDSNQLCSIK
Ga0211492_10638492	3300020238	Marine	LIAIIEVSEDEKKAEANIKMKSKTLSQKVDSDSNQ
Ga0211515_10005233	3300020310	Marine	LIAIIEVSDDEKKAEANIKMNSKTLSQKVDSDSNQLPVIVIDVLF
Ga0211623_103728711	3300020399	Marine	SDAEKKAEAKIRTKSKTLSQKVDSDSNQLPIIINEFLF
Ga0211514_100815411	3300020459	Marine	DEKKAEANIKMNSKTLSQKVDSDSNQLPVIVIDVLF
Ga0211514_103724112	3300020459	Marine	LIAIIEVSEDEKKAEAKIKIKSKTLSQKVDSDSNQLPIIFIDILF
Ga0206678_100871243	3300021084	Seawater	IAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNQLPIFIQ
Ga0206691_12550771	3300021342	Seawater	AIIEVSVPEKKAEARIRAKSKTLSQNVDSDSNKLPIFIQ
Ga0213868_100730403	3300021389	Seawater	LIAIIEVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPII
Ga0213868_102465661	3300021389	Seawater	SDDEKKAEAKINTKSKTLSQKVDSDSNQLPIIVIEIPF
Ga0206685_101446052	3300021442	Seawater	RRYRLIAIIDVSDAEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEFIF
Ga0222719_102601762	3300021964	Estuarine Water	VSDDEKKAEAKINTKSKTLSQKVDSDSNQLPIIVIEIPF
(restricted) Ga0233427_104355821	3300022933	Seawater	AEKKAEARIRMKSKTLSQKVDSDSNQLPIIINEFLF
Ga0228686_10345931	3300023685	Seawater	RYRLIAIIEVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIDILF
Ga0228638_10678672	3300024230	Seawater	LIAIIEVSDDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIKVLF
Ga0228659_10163561	3300024332	Seawater	RLIAIIEVSDDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIKVLF
Ga0228659_10515092	3300024332	Seawater	LIAIIEVSDDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVI
Ga0228672_11873732	3300024335	Seawater	RYRLIAIIDVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIDILF
Ga0244777_103140881	3300024343	Estuarine	IAIIDVSDAEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEFIF
Ga0209685_10340851	3300025468	Marine	IDVSVEEKKAETSIKPKSRTLSQKVESDSNQLWFG
Ga0209249_10745261	3300025659	Marine	IAIIDVSVEEKKAETSIKPKSRTLSQKVESDSNQLWFG
Ga0209047_11675932	3300025727	Marine	IIDVSDAEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEFIF
Ga0209425_105535362	3300025897	Pelagic Marine	DEKKAEANIKMNSKTLSQKVDSDSNQLPVIVVDVLF
Ga0208127_11170182	3300026201	Marine	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPI
Ga0208127_11615162	3300026201	Marine	EVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPILVIEILF
Ga0247581_10168472	3300026420	Seawater	LIAIIEVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIDVLF
Ga0247594_10049284	3300026448	Seawater	DEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIDILF
Ga0247594_10712772	3300026448	Seawater	LIAIIEVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIV
Ga0247568_10678982	3300026462	Seawater	RFIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIIVIDILF
Ga0247603_10426772	3300026468	Seawater	IAIIEVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIKVLF
Ga0247602_10697352	3300026471	Seawater	EKKAEANIKMKSKTLSQKVDSDSNQLPIIVIKVLF
Ga0228641_10911442	3300026491	Seawater	LIAIIEVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVID
Ga0247592_10192023	3300026500	Seawater	SEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIKVLF
Ga0208308_10505592	3300027228	Estuarine	AIIEVSDAEKKADAIISKNSKTLSQKVDSDSNQSP
Ga0209752_10774071	3300027699	Marine	IIEVSVPEKKAEARIRAKSKTLSQKVDSDSNQLTILIQ
Ga0209752_10829992	3300027699	Marine	IIEVSVPEKKAEARIRAKSKTLSQKVDSDSNQLPIFIQ
Ga0228674_11247982	3300028008	Seawater	AIIEVSDDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIKVLF
Ga0247584_10192423	3300028110	Seawater	DEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIKVLF
Ga0228619_10792212	3300028130	Seawater	LIAIIEVSDDEKKAEANIKMKSKTLSQKVDSDSNQ
Ga0228639_11103252	3300028397	Seawater	RRYRLIAIIAVSEDEKKAEANIKMKSKTLSQKVDSDSNQLPIIVIDILF
Ga0257109_10067921	3300028487	Marine	IIEVSVPEKKAEARIRAKSKTLSQKVDSDSNKLPIFIQ
Ga0257112_102086702	3300028489	Marine	EVSVPEKKAEARIRAKSKTLSQKVDSDSNQLPIFIQ
Ga0302123_103816831	3300031623	Marine	IDVSDAEKKAEAKIRTKSKTLSQKVDSDSNQLPIIINEFLF
Ga0307986_103989312	3300031659	Marine	AIIEVSADEKKAEASIKPNNKILSQKVESDSNQLWRIK
Ga0315322_101376872	3300031766	Seawater	LIAIIEVSDDEKKAEANIKMNSKTLSQKVDSDSNQLPVIVVDVLF
Ga0315326_103253011	3300031775	Seawater	LSDLRRYRLIAIIDVSDAEKKAEARIRTKSKTLSQKVDSDSN
Ga0315326_104443982	3300031775	Seawater	LSAIIEVSDAEKKADAIISKNSKTLSQKVDSDSNQSP
Ga0315319_104965522	3300031861	Seawater	EVSVPEKKAEARIRAKSKALSQKVDSDSNKLPIFIQ
Ga0315319_105360672	3300031861	Seawater	EVSVPEKKAEARIRAKSKTLSQKVDSDSNQLPILIQ
Ga0315324_102334951	3300032019	Seawater	AEKKAEARIRIKSKTLSQKVDSDSNQLPIIINEFLF
Ga0315330_101146041	3300032047	Seawater	LIAIIEVSDDEKKAEAKIKMKSKTLSQKVDSDSNQLPIIVIDTLF
Ga0315330_106445631	3300032047	Seawater	SDDEKKAEANIKMNSKTLSQKVDSDSNQLPVIVIDLLF
Ga0315321_105052891	3300032088	Seawater	LIAIIEVSDDEKKAEANIKMNSKTLSQKVDSDSNQLPEIVIDVLF
Ga0315333_100935512	3300032130	Seawater	EKKAEAKIKKKSKTLSQKVDSDSNQVPIIVNEILF
Ga0315333_100951121	3300032130	Seawater	EVSVPEKKAEARIRAKSKTLSQKVDSDSNQLTILIQ
Ga0315333_104554342	3300032130	Seawater	IDVSDAEKKAEARIRTKSKTLSQKVDSDSNQLPIIINEFIF
Ga0315339_10241361	3300032134	Seawater	IAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNKLPIFIQ
Ga0315334_118265312	3300032360	Seawater	IAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNQLPILIQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters