Metagenome / Metatranscriptome Family F066117

Overview

Basic Information

• Family ID: F066117
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 127
• Average Sequence Length: 50 residues
• Representative Sequence: DQTARYLDSALSERLAEAVSCSQEDRLKRRYSKLRSFGRWGTL
• Number of Associated Samples: 98
• Number of Associated Scaffolds: 127

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 92.13 %
• Associated GOLD sequencing projects: 89
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (89.764 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (11.811 % of family members)
• Environment Ontology (ENVO): Unclassified (51.181 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (72.441 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 46.48%
  β-sheet: 0.00%
  Coil/Unstructured: 53.52%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00436	SSB	50.39
PF00919	UPF0004	7.87
PF04055	Radical_SAM	5.51
PF00675	Peptidase_M16	3.94
PF05193	Peptidase_M16_C	2.36
PF05139	Erythro_esteras	2.36
PF08388	GIIM	1.57
PF01844	HNH	1.57
PF01938	TRAM	0.79
PF01656	CbiA	0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	50.39
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	50.39
COG0621	tRNA A37 methylthiotransferase MiaB	Translation, ribosomal structure and biogenesis [J]	7.87
COG2312	Erythromycin esterase homolog	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.36
COG0761	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH	Lipid transport and metabolism [I]	1.57
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.79
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.79

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.76 %
Unclassified	root	N/A	10.24 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.76 %
Unclassified	root	N/A	10.24 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.76 %
Unclassified	root	N/A	10.24 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	29.13 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.36 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
Unclassified	root	N/A	10.24 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.79 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	14.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %
Unclassified	root	N/A	10.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.45 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	14.17 %
Chloracidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium	0.79 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.79 %
Unclassified	root	N/A	10.24 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.79 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Alcanivoracaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.79 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	14.17 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.79 %
Unclassified	root	N/A	10.24 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Alcanivorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.79 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	13.39 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.79 %
Unclassified	root	N/A	10.24 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Alcanivorax hongdengensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → Alcanivorax hongdengensis	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.79 %
Herbidospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora	0.79 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.79 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	13.39 %
Unclassified	root	N/A	10.24 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.79 %
Alcanivorax hongdengensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → Alcanivorax hongdengensis	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %
Chloracidobacterium thermophilum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	0.79 %
Herbidospora mongoliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Herbidospora → Herbidospora mongoliensis	0.79 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.79 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	13.39 %
Unclassified	root	N/A	10.24 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2162886012|MBSR1b_contig_3898130	Not Available	1457
3300000033|ICChiseqgaiiDRAFT_c1846601	All Organisms → cellular organisms → Bacteria	765
3300000364|INPhiseqgaiiFebDRAFT_100353705	All Organisms → cellular organisms → Bacteria	843
3300000789|JGI1027J11758_12077290	Not Available	929
3300003267|soilL1_10054102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1326
3300003267|soilL1_10108166	All Organisms → cellular organisms → Bacteria	1656
3300004020|Ga0055440_10009114	All Organisms → cellular organisms → Bacteria → Acidobacteria	1750
3300004479|Ga0062595_100418362	All Organisms → cellular organisms → Bacteria	969
3300005293|Ga0065715_10871548	All Organisms → cellular organisms → Bacteria	573
3300005328|Ga0070676_10585299	All Organisms → cellular organisms → Bacteria	803

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	47.24%
Host-Associated	Host-Associated	52.76%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	3.94%
Plants	Host-Associated → Plants	52.76%
Terrestrial	Environmental → Terrestrial	43.31%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.36%
Marine	Environmental → Aquatic → Marine	0.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.22%
Sediment	Environmental → Aquatic → Sediment	0.79%
Soil	Environmental → Terrestrial → Soil	43.31%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.79%
Ice	Environmental → Aquatic → Freshwater → Ice	1.57%
Loam	Environmental → Terrestrial → Soil → Loam	15.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.79%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.79%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.15%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.15%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.81%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.57%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.36%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.36%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.79%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.79%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.79%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.30%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300003267	Sugarcane bulk soil Sample L1	Environmental
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0098.00007290	2162886012	Miscanthus Rhizosphere	GAHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYTKLRRFGRWGIDGKDSQ
ICChiseqgaiiDRAFT_18466011	3300000033	Soil	AHTDYDQAARFLXSALSERLAEAVSSSQEARLERRYAKLRQFGRWGTA*
INPhiseqgaiiFebDRAFT_1003537053	3300000364	Soil	HTDYDQAARFLDSALSERLAEAVSCSQEVRLAKRYAKLRQFGRWGTA*
JGI1027J11758_120772901	3300000789	Soil	HAAAARFLDAALTRQLAEAVSLSQDDRLNRRFVKLRKFGRWGTTPS*
soilL1_100541021	3300003267	Sugarcane Root And Bulk Soil	DGGAHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYNKLRRFGRWGVDGKDS*
soilL1_101081661	3300003267	Sugarcane Root And Bulk Soil	HNDYDQTARYLDSALSERLAEAVSCSPEDRLSRRYSKLRGFGRWGTSDTATAES*
Ga0055440_100091143	3300004020	Natural And Restored Wetlands	LSERLAEAVSCTQEERLSRRYRKLRQFGRWGTADKEAGPTPA*
Ga0062595_1004183623	3300004479	Soil	LSEQLAEAVSCSQEERLSRRYSKLRHFGRWGTADKETGSQPSA*
Ga0065715_108715481	3300005293	Miscanthus Rhizosphere	HNDYDQTARFLDSALSERLAEAVSCSQEDRLSRRYSKLRRFGRWGTADQNGISSSPKSG*
Ga0070676_105852993	3300005328	Miscanthus Rhizosphere	DSALSERLAEAVSCSQEERLTRRYDKLRHFGRWGTADKETDPTANN*
Ga0070676_107402241	3300005328	Miscanthus Rhizosphere	TDYDRAARYLDSALSERLAEAVSCSQEERLAKRYAKLRLFGRWGGE*
Ga0070676_116106141	3300005328	Miscanthus Rhizosphere	NDYEKTARYLDSALSERLAEAVSCTQEERLSRRYAKLRQFGRWGTADPA*
Ga0070670_1003815631	3300005331	Switchgrass Rhizosphere	EGGAHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYNKLRGFGRWGVDGK*
Ga0070670_1007268711	3300005331	Switchgrass Rhizosphere	RFLDSALTERLAEAASCSQEERLARRHSKLRQFGRWGSD*
Ga0070670_1009035022	3300005331	Switchgrass Rhizosphere	TARFLDSALSERLAEAVSCSQEDRLKRRYSKLRGFGRWGVDGKDS*
Ga0070670_1021182592	3300005331	Switchgrass Rhizosphere	AARYLDVALTERLAEAVSCSQDERLARRYNKLRDFGRWGTA*
Ga0070661_1013282101	3300005344	Corn Rhizosphere	RYLDSALSEQLAEAVSCSQEERLSRRYSKLRHFGRWGTADKETDPQPSA*
Ga0070692_112093952	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LDSALSERLAEAVSCSPEERLSRRYSKLRHFGRWGTANEGAAPTPTS*
Ga0070675_1002219643	3300005354	Miscanthus Rhizosphere	ARYLDSALSERLAEAVSCSQEERLSRRYSKLRHFGRWGTAGKEARPTPAS*
Ga0070671_1015013371	3300005355	Switchgrass Rhizosphere	HNDYDQTARYLDSALSERLAEAVSCSTEDRLSRRYTKLRGFGRWGTSDAPVG*
Ga0070673_1010184262	3300005364	Switchgrass Rhizosphere	GAHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYNKLRRFGRWGVEGKDS*
Ga0070673_1016935121	3300005364	Switchgrass Rhizosphere	DAALTERLAEAVSCSQQERLSRRYDKLRHFGRWGTAENVAPTPAP*
Ga0070701_103463201	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	NDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYNKLRGFGRWGTDGKDAGPTKA*
Ga0070700_1002214212	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	PEGGAHNDYDQTARFLDSALSERLAEAVSCSQEDRLKRRYNKLRNFGRWGTL*
Ga0070694_1006201571	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	HNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYSKLRGFGRWGVDGKDS*
Ga0070706_1008682561	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	SALSERLAEAVSCTQDERLGRRYNKLRHFGRWGVLDNQGNPRPAT*
Ga0070699_1009071771	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	GAHNDYDQSARYLDSALSEQLAEAVSCSQEERLSRRYSKLRRFGRWGTADKEAGPQTST*
Ga0070699_1009446572	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	QAARYLDAALAERLAEAVSCSQDERLSRRYAKLRQFGRWGTT*
Ga0070679_1004795942	3300005530	Corn Rhizosphere	HNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYDKLRAFGRWGTDGKDTGPTPPQG*
Ga0070686_1007331302	3300005544	Switchgrass Rhizosphere	YDQSARYLDSALSERLAEAVSCSQEERLSRRYSKLRHFGRWGTAGKEARPTPAS*
Ga0070695_1013321501	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	TERLAEAVSCSQQERLSRRYDKLRQFGRWGTAETAGPTPAS*
Ga0070696_1002941913	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EQLAEAVSCSQEERLSRRYSKLRHFGRWGTADKETGPQPSA*
Ga0070696_1008101262	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	GAHTDYDQAARYLDAALTERLAEAVSCSQDERLTRRYQKLRAFGRWGTA*
Ga0070696_1012462702	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	YDQAAHYLDVALTERLAEAVSCSQDERLARRYNKLRDFGRWGTA*
Ga0070696_1012960532	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	GGAHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYNKLRGFGRWGTDAKDTGPA*
Ga0070693_1008160241	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	RYLDSALSERLAEAVSCSQEERLSRRYSKLRRFGRWGTADKKAGPQPST*
Ga0068855_1011633231	3300005563	Corn Rhizosphere	DYDQTARYLDSALSERLAEAVSQSQEDRLKRRYTKLRGFGRWGTDGKDASST*
Ga0070702_1012162632	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LAEAVSCSQEDRLTRRYSKLRHFGRWGTADEATGATPTS*
Ga0068859_1005500293	3300005617	Switchgrass Rhizosphere	TARYLDSALSERLAEAVSCSQEDRLSRRYSKLRHFGRWGTAENTNP*
Ga0068859_1008500881	3300005617	Switchgrass Rhizosphere	DYDQTARYLDSALSERLAEAVSCSQEDRLKRRYNKLRGFGRWGVDGK*
Ga0068859_1015890371	3300005617	Switchgrass Rhizosphere	HNDYDQTARYLDSALSERLAEAVSCSPEDRLSRRYSKLRGFGRWGTTEGAAPAG*
Ga0068859_1023265941	3300005617	Switchgrass Rhizosphere	YDQTARYLDSALSERLAEAVSCSQEDRLKRRYTKLRGFGRWGTV*
Ga0068859_1023472832	3300005617	Switchgrass Rhizosphere	HNDYDQSARYLDSALTEQLAEAVSCSQEERLSRRYSKLRHFGRWGTADEDAAPRPTS*
Ga0068864_1007422032	3300005618	Switchgrass Rhizosphere	GAHNDYDQTARFLDSALSERLAEAVSCSQEDRLKRRYSKLRGFGRWGTA*
Ga0068864_1023810681	3300005618	Switchgrass Rhizosphere	DQTARYLDSALSERLAEAVSCSQEDRLKRRYGKLRGYGRWGTDGKD*
Ga0075292_10367981	3300005887	Rice Paddy Soil	TARFLDSALSERLAEAVSCSQEDRLKRRYNKLRCFGRWGVAGKDT*
Ga0081539_101572371	3300005985	Tabebuia Heterophylla Rhizosphere	QTARYLDSALSERLAEAVSCSQEDRLTRRYSKLRRFGRWGTDGKNGE*
Ga0082029_15340012	3300006169	Termite Nest	EGGAHNDYDQTARYLDSALSERLAEAVSCSAEDRLSRRYSKLRSFGRWGTNDATAPDR*
Ga0075430_1014089862	3300006846	Populus Rhizosphere	DSALSERLAEAVSCSQEDRLTRRYSKLRHFGRWGTDGKDTNPTPPIS*
Ga0075431_1003898313	3300006847	Populus Rhizosphere	GAHNDYDQTARLLDSALSERLAEAVSCSQEDRLSRRYSKLRHFGRWGTDGHDTAHKAQDD
Ga0075425_1013734912	3300006854	Populus Rhizosphere	AHNDYDQTARYLDSALSERLAEAVSCSQEDRLSRRYSKLRRFGRWGTDGKDAGPTPSGS*
Ga0075434_1000799941	3300006871	Populus Rhizosphere	SARYLDSALSEQLAEAVSCSQEERLSRRYSKLRHFGRWGTADKETGSQPSA*
Ga0075434_1008033353	3300006871	Populus Rhizosphere	LSERLAEAVSCSQEERLSRRYSKLRRFGRWGTENSGPTPSK*
Ga0075429_1015901501	3300006880	Populus Rhizosphere	ALSERLAEAVSCSQEERLTRRYSKLRHFGRWGTADKETDPTPSS*
Ga0068865_1016702261	3300006881	Miscanthus Rhizosphere	AALTERLAEAVSCSQQERLSRRYDKLRHFGRWGTAENVAPTPAP*
Ga0079215_104775672	3300006894	Agricultural Soil	RFLDAALTERLAEAVSCSPEERLTRRYKKLREFGRWGTADATT*
Ga0079215_106298421	3300006894	Agricultural Soil	DYDQTARYLDSALTERLAEAVSCSTDDRLSRRYQKLRGFGRWGTSDSSTPDN*
Ga0075424_1000522436	3300006904	Populus Rhizosphere	LDSALSEQLAEAVSCSQEERLSRRYSKLRHFGRWGTADKETGPQPSA*
Ga0075424_1006792741	3300006904	Populus Rhizosphere	AHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYDKLRAFGRWGTDGEDTGPTAPAG*
Ga0079216_114947921	3300006918	Agricultural Soil	RFLDSALSERLAEAVSCSQEDRLKRRYSKLRGFGRWGTDESQRAKEV*
Ga0075419_100883631	3300006969	Populus Rhizosphere	HNDYDQTARYLDSALSERLAEAVSCSQEDRLSRRYSKLRGFGRWGTDGHDTSQNP*
Ga0079218_105473453	3300007004	Agricultural Soil	DYDQTARFLDSALSERLAEAVSCSQEDRLSRRYSKLRHFGRWGTDGKDTRPTPA*
Ga0099830_104180263	3300009088	Vadose Zone Soil	TARYLDSALSERLAEAVSCTQDERLVRRYNKLRHFGRWGTAGNEVQPTPTA*
Ga0114129_131957911	3300009147	Populus Rhizosphere	LSERLAEACSISQEDRLKRRYDKLRSFGRWGTDGKDTGPTPPAG*
Ga0105241_102047541	3300009174	Corn Rhizosphere	EGGAHNDYDQTARYLDSALSERLAEAVSQSQEDRLKRRYSKLRGFGRWGTEGKDASPT*
Ga0105242_101437171	3300009176	Miscanthus Rhizosphere	DYDQSARYLDSALSERLAEAVSCSQEERLSRRYSKLRHFGRWGTAGKEARPTPAS*
Ga0105242_111194852	3300009176	Miscanthus Rhizosphere	GGAHTDYDQAARLLDAALTERLAEAVSCSQDQRLARRYNKLREFGRWGNSDSSSK*
Ga0105242_120335141	3300009176	Miscanthus Rhizosphere	EQTARYLDSALSERLAAAVSCSQEDRLKRRYDKLRAFGRWGTAGKDTSPTPPAG*
Ga0105248_104623711	3300009177	Switchgrass Rhizosphere	DYDQTARYLDSALSERLAEAVSCSQEDRLKRRYDKLRAFGRWGTDGKDTGPTPPVG*
Ga0105248_116178591	3300009177	Switchgrass Rhizosphere	NDYDQTARYLDSALTERLAEAVSCSQDDRLSRRYSKLRHFGRWGSAHSETSS*
Ga0105248_121357152	3300009177	Switchgrass Rhizosphere	YDQTARYLDAALSERLAEAVSVSLEDRLKRRYNKLRSFGRWGTDVKDAGST*
Ga0105237_101568841	3300009545	Corn Rhizosphere	NDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYSKLRSFGRWGTL*
Ga0105237_103240261	3300009545	Corn Rhizosphere	RYLDSALSERLAETVSCSQEDRLKRRYSKLRGFGRWGTDGKDEPQRSTDV*
Ga0105238_113655111	3300009551	Corn Rhizosphere	GGAHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYSKLRHFGRWGVDGQDSK*
Ga0126308_108016552	3300010040	Serpentine Soil	YDQTAGFLDSALSERLAEAVSCSQEDRLARRYSKLRHFGRWGTADQVDEAAGN*
Ga0126384_124299781	3300010046	Tropical Forest Soil	DSALSERLAEAVSCSLEDRLKRRYTKLRSFGRWGTDGKGTSPT*
Ga0126372_104095333	3300010360	Tropical Forest Soil	ERLAEAVSCSDEERLERRYRKLRDFGRWGTADKGAAPTP*
Ga0105239_130343292	3300010375	Corn Rhizosphere	YDQTARYLDSALSERLAEAVSCSQEDRLKRRYGKLRGYGRWGTDGKD*
Ga0134124_101023823	3300010397	Terrestrial Soil	ARYLDSALSERLAEAVSCSQEDRLKRRYSKLRGFGRWGTS*
Ga0134124_108994351	3300010397	Terrestrial Soil	NDYDRTARYLDAALSERLAEAVSCSQQERLSRRYDKLRQFGRWGTAETAGPTPAS*
Ga0134127_107154311	3300010399	Terrestrial Soil	ERLAEAVSCSQQERLSRRYDKLRHFGRWGTAENVAPTPAP*
Ga0127502_103082832	3300011333	Soil	RLAEAVSCSQEDRLSRRYAKLRRFGRWGSSDKSEAAPDG*
Ga0136623_104779562	3300012045	Polar Desert Sand	DYDRAARFLDSALSERLAEAVSSSQEVRLAKRYAKLRQFGRWGTA*
Ga0137383_110647712	3300012199	Vadose Zone Soil	RYLDSALSERLAEAVSCTQDERLVRRYNKLRHFGRWGTAENEVQPTPTA*
Ga0137377_113596492	3300012211	Vadose Zone Soil	NDYDQTARYLDSALSERLAEAVSCTQDERLGRRYNKLRHFGRWGVMDNPGNPRSAT*
Ga0137367_105666911	3300012353	Vadose Zone Soil	AARYLDAALAERLAEAVSCSQDERLARRYMKLRQFGRWGTA*
Ga0150984_1177854591	3300012469	Avena Fatua Rhizosphere	LDYDQAGRYLDSALSERLAEAVSCSQEERLSRRYSKLRQFGRWGTDDKETGPTPTA*
Ga0137396_100175997	3300012918	Vadose Zone Soil	QTARYLDSALSERLAEAVSCTQDERLGRRYNKLRHFGRWGVMDNQGNPTPAT*
Ga0137394_108569841	3300012922	Vadose Zone Soil	DYDQTARYLDSALSERLAEAVSCTQDERLGRRYNKLRHFGRWGVMDSQGNPTPAT*
Ga0137404_122123301	3300012929	Vadose Zone Soil	DQAARLLDAALTERLAEAVSCSQDERLARRYNKLRGFGRWGTA*
Ga0164299_111990591	3300012958	Soil	YLDSALSERLAEAVSCSQDERLSRRYSKLRHFGRWGTAGKEAGPTPAS*
Ga0164305_122195442	3300012989	Soil	DRTARYLDAALSERLAEAVSCSQQERLSRRYDKLRQFGRWGTAETAGPTPAS*
Ga0157373_110338671	3300013100	Corn Rhizosphere	TARYLDSALSERLAEAVSCSQEDRLKRRYNKLRRFGRWGVEGKVTG*
Ga0163162_128967841	3300013306	Switchgrass Rhizosphere	QTARYLDSALSERLAEAVSCSQEDRLKRRYSKLRSFGRWGTL*
Ga0163162_132481691	3300013306	Switchgrass Rhizosphere	YLDSALSERLAEAVSCSQEDRLKRRYAKLRAFGRWGTDGKDTGPTPPAD*
Ga0157372_111826923	3300013307	Corn Rhizosphere	HNDYDQTARFLDSALSERLAEAVSCSQEERLTRRYDKLRHFGRWGTADKKTDPTANN*
Ga0180066_10455943	3300014873	Soil	ARFLDAALTERLAEAASSTQEERLARRHSKLRQFGRWGSD*
Ga0157379_110498861	3300014968	Switchgrass Rhizosphere	NDYEQTARYLDSALSERLAEAVSCSQEDRLKRRYAKLRAFGRWGTDGKDTGPTPPAG*
Ga0167632_10109451	3300015085	Glacier Forefield Soil	AHTDYDQTAHYLDSALSERLAEAVSCGQQERLAKRYSKLRQFGRWGVA*
Ga0137403_110511321	3300015264	Vadose Zone Soil	YAQAARFLDAALAERLAEAVSCSQDERLTRRYKKLREFGRWGTA*
Ga0132258_102187727	3300015371	Arabidopsis Rhizosphere	GAHNDYDQSARYLDSALSEQLAEAVSCSQEERLSRRYSKLRHFGRWGTADKETGSQPSA*
Ga0132258_112444391	3300015371	Arabidopsis Rhizosphere	SALSERLAEAVSCSQEDRLSRRYSKLRGFGRWGTDGKDAGPTPSGS*
Ga0132258_135236892	3300015371	Arabidopsis Rhizosphere	HNDYDQTARYLDSALSERLAEAVSQSQEDRLKRRYTKLRGFGRWGTDGKDASST*
Ga0132256_1012724501	3300015372	Arabidopsis Rhizosphere	NDYDQSARYLDSALTEQLAEAVSCSQEERLSRRYSKLRHFGRWGTADKETGPPPSA*
Ga0132257_1038425301	3300015373	Arabidopsis Rhizosphere	YDRTARYLDAALSERLAEAVSCSQQERLSRRYDKLRQFGRWGTAETTGPTPAS*
Ga0136617_100769341	3300017789	Polar Desert Sand	TDYDQAARLLDSALSERLAEAVSCTQEVRLAKRYAKLRQFGRWGTA
Ga0190265_102604923	3300018422	Soil	GGAHNDYDQTARYLDSALSERLAEAVSCSQEDRLSRRYSKLRGFGRWGTDGHADAHEQQTIS
Ga0193719_101202533	3300021344	Soil	YLDSALSERLAEAVSCTQDERLGRRYNKLRHFGRWGVMDSQGNPRPAT
Ga0209431_102795443	3300025313	Soil	AHTNYDQTARYLDSALSKKLAEAVSCSQDERLARRYAKLRQFGRWELEDSFAGPASGE
Ga0207645_104044291	3300025907	Miscanthus Rhizosphere	RFLDSALSERLAEAVSCSQEERLTRRYDKLRHFGRWGTADKETDPTANN
Ga0207660_105059481	3300025917	Corn Rhizosphere	DGGAHNDYDQTARYLDAALTERLAEAVSCSQQERLSRRYDKHRQFGRWGTAETAGPTPAS
Ga0207652_103529151	3300025921	Corn Rhizosphere	GAHNDYDQTARYLDSALSERLAEAVSCSQEDRLKRRYDKLRAFGRWGTDGKDTGPTPPQG
Ga0207646_119386961	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	NDYDRTARYLDAALSERLAEAVSCSQQERLSRRYDKLRQFGRWGTAETAGPTPAS
Ga0207686_100867261	3300025934	Miscanthus Rhizosphere	DYDQSARYLDSALSERLAEAVSCSQEERLSRRYSKLRHFGRWGTAGKEARPTPAS
Ga0207686_117701071	3300025934	Miscanthus Rhizosphere	DQTARYLDSALSERLAEAVSCSQEDRLKRRYSKLRSFGRWGTL
Ga0207704_115524392	3300025938	Miscanthus Rhizosphere	AARLLDAALTERLAEAVSCSQDERLARRYNKLRDFGRWGTS
Ga0207651_104429981	3300025960	Switchgrass Rhizosphere	TDYDQAARLLDAALTERLAEAVSCSQDERLARRYNKLRDFGRWGTS
Ga0207676_112785221	3300026095	Switchgrass Rhizosphere	QTARYLDSALSERLAEAVSCSQDDRLTRRYSKLRQFGRWGTADKESGPTPTA
Ga0207674_109970432	3300026116	Corn Rhizosphere	RFLDSALSERLAEAVSCSQEDRLKRRYSKLRGFGRWGVDGKDS
Ga0207428_108871231	3300027907	Populus Rhizosphere	LDSALSERLAEAVSCSQEDRLTRRYSKLRRFGRWGTDVKDGNPTPSA
Ga0268241_101349741	3300030511	Soil	GAHNDYDQTARLLDSALSERLAEAVSCSQEDRLSRRYSKLRRFGRWGSTDQNGISSSDKS
Ga0307408_1007353872	3300031548	Rhizosphere	DQAARYLDSALSERLAEAVSCSQEDRLRRRYSKLRGFGRWGIDGHESPSNTQKD
Ga0310813_103563871	3300031716	Soil	HNDYDRTARYLDAALSERLAEAVSCSQQERLSRRYDKLRQFGRWGTAETAGPTPAS
Ga0307407_100704322	3300031903	Rhizosphere	HNDYDQTARFLDSALSERLAEAVSCSQEDRLKRRYSKLRGFGRWGTEPQKST
Ga0307416_1033274321	3300032002	Rhizosphere	RYLDSALSERLAEAVSCSQEDRLTRRYSKLRRFGRWGTDGKDGNPTPSA
Ga0307471_1031053551	3300032180	Hardwood Forest Soil	QTDHDAAARFLDAAMTRQLAEAVRLSQEERLARRYAKLRKFGRWGAE
Ga0310896_102048573	3300032211	Soil	YLDAALTERLAEAVSCSQQERLSRRYDKLRHFGRWGTAENAAPTPAP