Metagenome / Metatranscriptome Family F066092

Overview

Basic Information

• Family ID: F066092
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 127
• Average Sequence Length: 43 residues
• Representative Sequence: MLECLAEGMSLEDIDQSFDHAFPHEALPEVLKVASELADSFHVAA
• Number of Associated Samples: 112
• Number of Associated Scaffolds: 127

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 11.02 %
• % of genes near scaffold ends (potentially truncated): 78.74 %
• % of genes from short scaffolds (< 2000 bps): 80.31 %
• Associated GOLD sequencing projects: 110
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (85.039 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (16.535 % of family members)
• Environment Ontology (ENVO): Unclassified (40.157 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (34.646 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 39.73%
  β-sheet: 0.00%
  Coil/Unstructured: 60.27%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF02604	PhdYeFM_antitox	5.51
PF04255	DUF433	3.94
PF05016	ParE_toxin	2.36
PF08972	DUF1902	2.36
PF13744	HTH_37	1.57
PF01408	GFO_IDH_MocA	0.79
PF03061	4HBT	0.79
PF13692	Glyco_trans_1_4	0.79
PF12543	DUF3738	0.79
PF01695	IstB_IS21	0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	5.51
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	5.51
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	3.94
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.57
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.79
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.79
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.79
COG2068	CTP:molybdopterin cytidylyltransferase MocA	Coenzyme transport and metabolism [H]	0.79
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	0.79
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.79

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.04 %
Unclassified	root	N/A	14.96 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.04 %
Unclassified	root	N/A	14.96 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.04 %
Unclassified	root	N/A	14.96 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	56.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.57 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
Unclassified	root	N/A	14.96 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.57 %
Unclassified	root	N/A	14.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.09 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.72 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	6.30 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.57 %
Unclassified	root	N/A	14.96 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.72 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.57 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.79 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1.57 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.15 %
Unclassified	root	N/A	14.96 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	1.57 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.79 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.57 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.79 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	2.36 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.57 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1.57 %
Scytonemataceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae	0.79 %
Unclassified	root	N/A	14.96 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.79 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.79 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.79 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.57 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.79 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1.57 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %
Planctomyces	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces	1.57 %
Scytonema	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema	0.79 %
Unclassified	root	N/A	14.96 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	2.36 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.09 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.79 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.79 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.57 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.79 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	2.36 %
Granulicella aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella aggregans	1.57 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %
Planctomyces bekefii	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii	1.57 %
Scytonema hofmannii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema → Scytonema hofmannii	0.79 %
Unclassified	root	N/A	14.96 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004635|Ga0062388_100314335	All Organisms → cellular organisms → Bacteria → Acidobacteria	1315
3300005367|Ga0070667_100174276	All Organisms → cellular organisms → Bacteria	1900
3300005436|Ga0070713_100676852	All Organisms → cellular organisms → Bacteria	984
3300005535|Ga0070684_100786149	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	889
3300005541|Ga0070733_10227209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1224
3300005583|Ga0049085_10075746	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii	1179
3300006052|Ga0075029_100000936	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	16876
3300006162|Ga0075030_100000181	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	50159
3300006172|Ga0075018_10759063	All Organisms → cellular organisms → Bacteria → Acidobacteria	529
3300009111|Ga0115026_10029386	All Organisms → cellular organisms → Bacteria	2812

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.28%
Host-Associated	Host-Associated	4.72%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	42.52%
Plants	Host-Associated → Plants	4.72%
Terrestrial	Environmental → Terrestrial	52.76%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	39.37%
Peat	Environmental → Terrestrial → Peat	14.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.72%
Sediment	Environmental → Aquatic → Sediment	3.15%
Soil	Environmental → Terrestrial → Soil	38.58%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	5.51%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.79%
Loam	Environmental → Terrestrial → Soil → Loam	2.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	31.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.39%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.05%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.09%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	5.51%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.79%

Habitat

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.72%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.72%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.72%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.57%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.57%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.09%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.57%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	16.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.66%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.15%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.36%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.15%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.79%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062388_1003143354	3300004635	Bog Forest Soil	LILECLASGMSLDDIDQSFGGSFPHQALPEVLKVASEITDSFHVAA*
Ga0070667_1001742761	3300005367	Switchgrass Rhizosphere	MLLSLNALILESLANGMSLDEIDAAFDHSFPRESLPEILEVASELTDSFHVAA*
Ga0070713_1006768523	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GGMSLEEINDSFDSAFPSEALPEVLKVASELADSFHVAA*
Ga0070684_1007861491	3300005535	Corn Rhizosphere	AGGMSLGDIDEAFDNAFPHEAVPEVLKVASELTDSFHVAA*
Ga0070733_102272094	3300005541	Surface Soil	GMSLADIDQSFNNAFPHEALPEVLKVASELADSFHVAA*
Ga0049085_100757464	3300005583	Freshwater Lentic	VALILECLANDMDMAEIDAAFGGAFPHEALPEVLKVASELADVAA*
Ga0075029_1000009368	3300006052	Watersheds	LSVSLILECLANGMSRDDIDSAFNRVFPHEALPEVLKVAAELADSIHVAA*
Ga0075030_10000018126	3300006162	Watersheds	VSLILECLANGMSRDDIDSAFNRVFPHEALPEVLKVAAELADSIHVAA*
Ga0075018_107590631	3300006172	Watersheds	ESLANGMSLDEIDAAFDHSFPREALPEVLKVASELTDSFHVVA*
Ga0115026_100293861	3300009111	Wetland	MTLDDIDESFERTFPREALSEIMKVASELAGAVHAAA*
Ga0105243_131446042	3300009148	Miscanthus Rhizosphere	DEIDSAFDHAFPRESLPEVLKVASELTDSFHVAA*
Ga0111538_111069072	3300009156	Populus Rhizosphere	VGAGVAGGMSLKGIEEAFDHAFPHEALPEVLKVASELTNAFRVAA*
Ga0105100_108245082	3300009166	Freshwater Sediment	LAGGMSLEEINDSFDSAFPPEALPEVLKVASELAGSFHVAA*
Ga0116128_10392054	3300009518	Peatland	SLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA*
Ga0116225_12932371	3300009524	Peatlands Soil	LECLASGMSFEEINESFDGAFPPDALPEVLQVASELADSFHVAA*
Ga0116127_10040051	3300009618	Peatland	TRLSVSLILECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA*
Ga0116116_10540213	3300009621	Peatland	GGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA*
Ga0116133_11966201	3300009623	Peatland	CLAGGMSLEEINDSFDCAFPPEALPEVLKVASELTGSFHVAA*
Ga0116124_10407594	3300009634	Peatland	GMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA*
Ga0116122_10567353	3300009639	Peatland	SLEDIDQAFDGAFPHDALAEVLKVASELTGSFHVAA*
Ga0116132_10187861	3300009646	Peatland	ECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA*
Ga0116131_12219551	3300009760	Peatland	LAGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA*
Ga0116219_105890682	3300009824	Peatlands Soil	SLILECLAAGMSLEEIDQAFDRAFPHEAMPEVLKVAAELTNSIHVAA*
Ga0126373_100875752	3300010048	Tropical Forest Soil	MSLEDIDQSFDHAFPHEALPEVLKVASEQADSFHVAA*
Ga0074045_108651971	3300010341	Bog Forest Soil	TLQDIDEAFDRAFPREALPEVLKVAAEVTNSIHVAA*
Ga0074044_109906931	3300010343	Bog Forest Soil	SLADIDQSFNNAFPHEALPEVLKVASELANSFHVAA*
Ga0126381_1000675295	3300010376	Tropical Forest Soil	MANGMSLEDIDEAFDCAFPHEALPEVLKVASEVTDRFHVAA*
Ga0126381_1024892012	3300010376	Tropical Forest Soil	MLECLAEGMSLEDIDQSFDHAFPHEALPEVLKVASELADSFHVAA*
Ga0138578_12170301	3300011110	Peatlands Soil	LSVALILECLAAGMTLAEIDEAFDRAFPHEALPEVLKVASELTNSVHVAA*
Ga0150983_151455711	3300011120	Forest Soil	LILECLASGMSLDDIDQSFDCDFPRQALPEVLKVASEFTDCFRVAA*
Ga0137393_117967391	3300011271	Vadose Zone Soil	ILESQTVSLDEIDSAFDRSFPHEALPEVLKVASELTDSFHVAA*
Ga0137384_108786713	3300012357	Vadose Zone Soil	MAGGMSLEDIDESFDCDFPREALPEVLKVASEFTDSFHVAA*
Ga0137384_115119662	3300012357	Vadose Zone Soil	LILECLSGGMSLDDIDQSFGGSFPLQALPEVLKVASEITDSFHVAA*
Ga0137375_109797913	3300012360	Vadose Zone Soil	TRLSVALILECLANGMTLRDIDDSFAAAFPHEALPEVLKVAAELAATYRVAA*
Ga0137404_102100401	3300012929	Vadose Zone Soil	VLAGFFASGISLDDIDESFSGTFPRLALPEVLKVASEITDSFHVAA*
Ga0120158_103546342	3300013772	Permafrost	LILECLGEGMSLAEIDESFGGVFPTEALPEVLKVASELADTTHVAS*
Ga0181527_11718572	3300014153	Bog	RLSVSLILECLAAGMSLEDIDQAFDRVFPHEAMPEVLKVAAELTNSIHVAA*
Ga0181530_102866461	3300014159	Bog	MSLDDIDESFDGAFPRTALPEVLKVASELTGSFLVAA*
Ga0181538_107261401	3300014162	Bog	TRRAVSLILECLASGMSLDDIDESFDGAFPRTALPEVLKVASELTGSFLVAA*
Ga0181532_104567351	3300014164	Bog	MSLEEINDSFDSAFPPEALPEVLKVASELAGSFHVAA*
Ga0181526_110384691	3300014200	Bog	LANGMSLEDIDEAFQGAFPRAALPEVLKVASEFADSFHVAA*
Ga0181526_110492722	3300014200	Bog	ECLANGMSLNDIDESFNHAFPHAALPEVLKVASEFADSFHVAA*
Ga0182018_104271751	3300014489	Palsa	ILESLANGMSLDEIDSAFDHCFPHEALPEVLKVASELTDSFHVAA*
Ga0182016_101191955	3300014493	Bog	TRLSVELILECLSNGMTLDDIDDAFAHAFPREALPEVLKVASEFTGSFHVAA*
Ga0182016_104512561	3300014493	Bog	TRLSVELILECLSNGMSLGDIDESFHNAFPHAALHEVLKVASEFADSFHVAA*
Ga0182016_105828192	3300014493	Bog	LSVELILESLANGMSLADIDESFHNAFPRAALHEVLKIASEFAGSFHVAA*
Ga0182030_1000244432	3300014838	Bog	MSLQDIDDAFAHAFPHEALPEVFKVASELADSFNPLA*
Ga0182030_100283536	3300014838	Bog	MANGMSLEDINEAFGGAFTPDAIPEVMRVASAFADAFHVAA*
Ga0182030_109029893	3300014838	Bog	TLDDIDDAFAHAFPREALPEVLKVASEFTGSFHVAA*
Ga0182027_113560001	3300014839	Fen	LEEIDDSFDSAFPSEALPEVLKVASELAGSFHVAA*
Ga0182039_120499742	3300016422	Soil	MLECLAEGMSLEDIDQSFDHAFPHEALPEVLKVASELADSFHVAA
Ga0134069_13057762	3300017654	Grasslands Soil	VAQILECLANGMTLDDIDESFDHSFPREALPEVLKVASELASAVHVAA
Ga0187849_101003714	3300017929	Peatland	LSVSLILECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA
Ga0187849_10826584	3300017929	Peatland	LSVSLILECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADVTNSVHAAA
Ga0187877_10199891	3300017931	Peatland	ILECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA
Ga0187803_102825453	3300017934	Freshwater Sediment	GMSLDDIDEAFDRAFPHEALPEVLKVASQLTNSFHVAA
Ga0187850_100115291	3300017941	Peatland	SVSLILECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA
Ga0187778_110912152	3300017961	Tropical Peatland	SLILECLSAGMSLADIDDSFDNAFPHEALPEVLKVAAELTNSVHVAA
Ga0187781_106947472	3300017972	Tropical Peatland	SNASGMSLEEIGETFDCPFPHEALPEVLKVAAELTNSVHVAA
Ga0187782_103296193	3300017975	Tropical Peatland	SVSLILECLAAGMSLVEIDGALEGAFSHEALPEVLKAAAERPNSVKMRHVWKWN
Ga0187891_10077311	3300017996	Peatland	LPEIDEAFDRAFPHEALPEVLRVAAELTNYVHVAA
Ga0187878_10892724	3300018005	Peatland	GTRLSLSLILESLAGGMYLAEIDEAFDCAFPHEALPEVLKVAAELTNSVHVAA
Ga0187886_12378061	3300018018	Peatland	LAVSLILECLASGMSLEDIDQSFAHAFPHDALPEVLKVASELTGSFHVAA
Ga0187861_104940221	3300018020	Peatland	LAAGMSLEDIDQAFDRAFPHEAMPEVLKVAAELTNSIHVAA
Ga0187882_10260801	3300018021	Peatland	TRLSVSLILECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADVTNSVHAAA
Ga0187864_104938311	3300018022	Peatland	TRLSVSLILECLAAGMSLEDIDQAFDRVFPHEAMPEVLKVAAELTNSIHVAA
Ga0187885_102280713	3300018025	Peatland	LAEIDEAFDCAFPHEALPEVLKVAAELTNSVHVAA
Ga0187857_100115607	3300018026	Peatland	LSVSLILECLAGGMSLAEIDEAFDRAFPHEALPEVLRVAAEVTNSVHVAA
Ga0187857_100271816	3300018026	Peatland	LECLAGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA
Ga0187869_100352995	3300018030	Peatland	AGGMSLAEIDEAFDRAFPHEALPEVLKVAADLTNSVHVAA
Ga0187867_105225711	3300018033	Peatland	VSLILECLAAGMTLQDIDEAFDRAFPQEALPEVLKVAAEVTNSVHVAA
Ga0187863_108420302	3300018034	Peatland	VSLILECLASGMSFDDIDQSFGGTFPRQALPEVLRVASEITDSFHVAA
Ga0187875_105237893	3300018035	Peatland	ANGMSLEDIDEAFQGAFPRAALPEVLKVASEFADSFHVAA
Ga0187855_103250441	3300018038	Peatland	LECLAAGMTLQDIDESFDRAFPPEALPEVLKVAAEVTNSIHVAA
Ga0187871_108421651	3300018042	Peatland	AVSLILECLASGMTLEDIDQSFDHAFPHEALAEVLKVASELTDSFHVAA
Ga0187890_101989422	3300018044	Peatland	LECLSSGMSLEDIDQSFDYAFPHEALPEVLKVASELPMLDATS
Ga0187890_105268971	3300018044	Peatland	ECLAGGMSLEEINDSFDSAFPPEALPEVLKVASELAGSFHVAA
Ga0182022_12898395	3300019785	Fen	MSLDDIDQSFDCDFPRQALPEVLKVASEFTDSYHVAA
Ga0210395_112836311	3300020582	Soil	LAGGMSLADIDQSFNNAFPHEALPEVLKVASELADPFHVAA
Ga0210401_111328113	3300020583	Soil	GMSLDDIDQSFDCDFPRQALPEVLKVASEFTDCFRVAA
Ga0210405_108604902	3300021171	Soil	LLSPADIDEAFDHAFPRAALAEVLKVACKLTNSFHVAA
Ga0210386_102548892	3300021406	Soil	MSLADIDQSFNNAFPHEALPEVLKVASELADPFHVAA
Ga0210394_101099433	3300021420	Soil	MSLDDIEQSFGGTFPRQALPEVLKVASEITDSFHVAA
Ga0208037_10202654	3300025448	Peatland	SVSLILECLAGGMSLAEIDGAFDRAFPHEALPEVLRVAAELTNSVHVAA
Ga0208937_11043021	3300025506	Peatland	ILECLAGGMSLEEINDSFDSAFPPEALPEVLKVASELAGSFHVAA
Ga0208188_10619083	3300025507	Peatland	LAGGMSLEEINDSFDSAFPPEALPEVLKVASELAGSFHVAA
Ga0209580_101068441	3300027842	Surface Soil	SVSQILECLASGMSLADIDEAFDHAFPQEALPEVLKVASELTDSFHVAA
Ga0209590_107606951	3300027882	Vadose Zone Soil	LSVSLILECLAGGMSLEDIDEAFDGAFPREALPEVLKVASEFTDSFHVAA
Ga0209067_102963461	3300027898	Watersheds	VSLILECLANGMSRDDIDSAFNRVFPHEALPEVLKVAAELADSIHVAA
Ga0265323_1000010234	3300028653	Rhizosphere	MSLGEIDDSFGIDFPREALPEVLRVASELTKSFHVAA
Ga0302303_102098761	3300028776	Palsa	MSLDDIDQSFGGDFPREALPEVLKVASEITDAFHVAA
Ga0302266_100383751	3300028779	Bog	AVSLILECLAGGMSLEEINDSFDCAFPPEALPEVLKVASELTGSFHVAA
Ga0302201_101794332	3300028785	Bog	VSLILECLAGGMSLEEINDSFDCAFPPEALPEVLKVASELTGSFHVAA
Ga0311361_103668602	3300029911	Bog	MSLADIDESFHHGFPHAALPEVLKVAAEFAGSFHAAA
Ga0311361_109291852	3300029911	Bog	MRASGMSLDDIVESFGGTFPRQALPEVLKVASEITGSFH
Ga0311338_101693024	3300030007	Palsa	MSLQDIDEAFDHAFPHEALPEVLKVASELAGSFHVAA
Ga0302270_107230861	3300030011	Bog	CLANGMSLTDIDESFHNSFPHAALHEVLKVASEFAGSFALPA
Ga0302176_101237111	3300030057	Palsa	ILECLASGMSLDDIDQSFGGDFPREALPEVLKVASEITDLFHVAA
Ga0311370_105160712	3300030503	Palsa	SLILECLASGMSLDDIDQSFDCDFPRQALPEVLKVASEFTDSFHVAA
Ga0311372_119490871	3300030520	Palsa	GMSLDDIDESFGGTFPRQAMPEILKVASEITDSFHVAA
Ga0310039_101418833	3300030706	Peatlands Soil	TRLSVALILECLAAGMTLAEIDEAFDRAFPHEALPEVLKVASELTNSVHVAA
Ga0302323_1005376243	3300031232	Fen	STRLSVSLILECLASGMTLKDIDESFDNGFPHEALPEVLKVASELTDSFHVAA
Ga0265330_101152993	3300031235	Rhizosphere	WPFAAPGGMSLGEIDDSFGIDFPREALPEVLRVASELTKSFHVAA
Ga0302324_1006264651	3300031236	Palsa	LSNGMSLGDIDESFHNTFPHAALHEVLKVASEFGGSFPFAGELADF
Ga0265331_103287163	3300031250	Rhizosphere	NGMSLDEIDSAFDHCFPHDALPEVLKVASELTDSFHVAV
Ga0302320_120404142	3300031524	Bog	MSFDDIDQSFGGTFPRQALPEVLKVASEITDSFHVAA
Ga0302326_104833221	3300031525	Palsa	LDDIDQSFGGDFPREALPEVLKVASEITDLFHVAA
Ga0302326_109138091	3300031525	Palsa	SVELILECLSNGMSLGDIDESFHNMFPHAALHEVLKVASEFAGSFHVAA
Ga0302326_110606681	3300031525	Palsa	LANGMSLSDIDEAFAHAFPHAALGEVLKVASEFTGSFHVAA
Ga0307474_104717913	3300031718	Hardwood Forest Soil	IRGTRLSVGLILECMVNGMSLQDIDEAFHDAFPHAALPEILKVASEFADSFHVAA
Ga0307474_115983182	3300031718	Hardwood Forest Soil	RLSVSLILECLASGMSLDDIDQSFGGTFPRQAFPEVLKVASEITDSFHVAA
Ga0315288_100970195	3300031772	Sediment	MTLADIDESFGHTFPHEALPEVLKVASELAESVPVAA
Ga0318529_104042591	3300031792	Soil	SVSLILECLAGGMSLREIDDAFDSTFPHEALPEILRVASELADSFHVAA
Ga0307478_112259352	3300031823	Hardwood Forest Soil	ECLSNGMSLEDIDSAFANVFPHEALPEVLKVASELTDSFHVAA
Ga0315290_100590941	3300031834	Sediment	TLDDIDENFDRAFPREALSEVLKVASELAGAVHVTA
Ga0306919_100013824	3300031879	Soil	MSLREIDDAFDSAFPHEALPEILRVASELADSFHVAA
Ga0315294_108959111	3300031952	Sediment	MSLEEINDSFDSAFPSEALPEVLKVASELAGSFHVAA
Ga0315274_108003922	3300031999	Sediment	LAGGMSLEEINDSFDSAFPSEALPEVLKVASELAGSFHVAA
Ga0318575_107167981	3300032055	Soil	AGGMSLREIDDAFDSTFPHEALPEILRVASELADSFHVAA
Ga0315282_102878001	3300032069	Sediment	TRLSVSLILECLANGMTLDDIDESFDRTFPHEALSEILKVASKLAGAVHVAA
Ga0315282_105482713	3300032069	Sediment	RLAVSLILECLASGMSLEDIDQSFGHAFPHDALPEVLKVASELTGSFHVAA
Ga0315277_110039671	3300032118	Sediment	ECLSNGMTLDDIDESFDRSFPHEALPEVLKVASELVGSIHVAA
Ga0335078_101922941	3300032805	Soil	MSLQDIDEALDRAFPHEALPEVLKVASELTDSFHVAA
Ga0326728_102316541	3300033402	Peat Soil	GMSLEEIDEAFDNTFPHEALPEVLKVAAERANSAKMAHVWK
Ga0316601_1002244233	3300033419	Soil	ANGMTLDDIDESFERTFPREALSEILKVASELAGAVHAAA
Ga0314861_0376889_3_122	3300033977	Peatland	AGMTLLDIDEAFDHAFPHEALPEVLKVAAELTNSVHVAA
Ga0326724_0683662_1_129	3300034091	Peat Soil	CLATGMSLEEIDGAFDRAFPHEALPEVLRVAAEVTNSVHVAA