Metagenome / Metatranscriptome Family F065926

Overview

Basic Information

• Family ID: F065926
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 127
• Average Sequence Length: 53 residues
• Representative Sequence: WSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF
• Number of Associated Samples: 103
• Number of Associated Scaffolds: 127

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.79 %
• % of genes near scaffold ends (potentially truncated): 99.21 %
• % of genes from short scaffolds (< 2000 bps): 95.28 %
• Associated GOLD sequencing projects: 92
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (88.976 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.598 % of family members)
• Environment Ontology (ENVO): Unclassified (39.370 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (60.630 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 21.95%
  Coil/Unstructured: 78.05%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF13740	ACT_6	6.30
PF07690	MFS_1	3.94
PF01028	Topoisom_I	3.15
PF00903	Glyoxalase	2.36
PF13620	CarboxypepD_reg	2.36
PF03972	MmgE_PrpD	1.57
PF02738	MoCoBD_1	1.57
PF00593	TonB_dep_Rec	1.57
PF00076	RRM_1	1.57
PF12543	DUF3738	1.57

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG3569	DNA topoisomerase IB	Replication, recombination and repair [L]	3.15
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	1.57
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.79
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.79
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.79
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.79
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.79
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.79

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.76 %
Unclassified	root	N/A	10.24 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.98 %
Unclassified	root	N/A	10.24 %
Viruses	superkingdom	All Organisms → Viruses	0.79 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Unclassified	root	N/A	10.24 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.17 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.45 %
Unclassified	root	N/A	10.24 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Unclassified	root	N/A	10.24 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	33.07 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.36 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.79 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.79 %
Unclassified	root	N/A	10.24 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.79 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.79 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.36 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.79 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	8.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Unclassified	root	N/A	10.24 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.79 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	8.66 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Unclassified	root	N/A	10.24 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	8.66 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Unclassified	root	N/A	10.24 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.07 %
Actinoplanes nipponensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes nipponensis	8.66 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.79 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %
Unclassified	root	N/A	10.24 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.36 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000956|JGI10216J12902_125951765	Not Available	645
3300002459|JGI24751J29686_10127565	All Organisms → cellular organisms → Bacteria	536
3300003267|soilL1_10218802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1109
3300004156|Ga0062589_100867210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827
3300004156|Ga0062589_101460861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670
3300004479|Ga0062595_102358263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526
3300004480|Ga0062592_101079569	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	741
3300005093|Ga0062594_101423210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705
3300005093|Ga0062594_101761915	All Organisms → cellular organisms → Bacteria → Acidobacteria	650
3300005294|Ga0065705_10543618	All Organisms → cellular organisms → Bacteria → Proteobacteria	745

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.18%
Host-Associated	Host-Associated	48.82%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.51%
Plants	Host-Associated → Plants	48.82%
Terrestrial	Environmental → Terrestrial	45.67%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.79%
Freshwater	Environmental → Aquatic → Freshwater	2.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.71%
Sediment	Environmental → Aquatic → Sediment	3.15%
Soil	Environmental → Terrestrial → Soil	44.88%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.36%
Loam	Environmental → Terrestrial → Soil → Loam	7.09%
Sand	Environmental → Terrestrial → Soil → Sand	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.60%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.57%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.57%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.51%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.57%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.36%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.72%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.15%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.79%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated
3300003267	Sugarcane bulk soil Sample L1	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1259517651	3300000956	Soil	ADRVFHWSGTRLILFAEVANVLNRRNLRSTPYGVDRLGRVVDTTESLMPIVPSAGFVVEF
JGI24751J29686_101275651	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	AYSRLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF*
soilL1_102188021	3300003267	Sugarcane Root And Bulk Soil	NWSGRRLVAFVEVANILNRSNLRNTSYFVDRAGRVFETTESLMPIVPSGGLVIEF*
Ga0062589_1008672102	3300004156	Soil	ADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRAGRVFETTESLMPIVPSGGLVFEF
Ga0062589_1014608611	3300004156	Soil	RMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0062595_1023582632	3300004479	Soil	AYARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0062592_1010795691	3300004480	Soil	LNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0062594_1014232102	3300005093	Soil	LDVRADRAFTWSGRRFVLFLDVANVLNRTNERNASYSVDRAGRVFETTESLMPIVPSGGFVVEF*
Ga0062594_1017619151	3300005093	Soil	AYSRLDVRADRAFTWSGRRLVVFVDVANVLNQTNLRNAGYSVDRAGRIFETTESLMPIVPSGGLVIEF*
Ga0065705_105436181	3300005294	Switchgrass Rhizosphere	LPAYSRLDVRADRAFNWSGRRLVLFIDVANVLNHTNERNASYFVDRGGRVFETTESLLPIVPSGGFVIEF*
Ga0070683_1008911591	3300005329	Corn Rhizosphere	LRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070690_1002897543	3300005330	Switchgrass Rhizosphere	FVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070677_101081342	3300005333	Miscanthus Rhizosphere	VLNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0070677_109184072	3300005333	Miscanthus Rhizosphere	ADRAFNWSSRRLVVFVDVANVLNRQNVRNTSYTIDRAGRVFDTTGSLLPIVPSGGVVVEF
Ga0070666_104410103	3300005335	Switchgrass Rhizosphere	VDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0068868_1006661062	3300005338	Miscanthus Rhizosphere	TERNILRLPPYARLDVRADRAFNWSSRRLVVFVDVANVLNRQNLRNTSYSIDRAGRVFDTTGSLLPIVPSGGLVVEF*
Ga0068868_1006729121	3300005338	Miscanthus Rhizosphere	NIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070661_1001374493	3300005344	Corn Rhizosphere	FNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070668_1004185501	3300005347	Switchgrass Rhizosphere	RLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSIDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0070668_1015135711	3300005347	Switchgrass Rhizosphere	IFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0070673_1016654641	3300005364	Switchgrass Rhizosphere	LLRLPPYSRLDVRADRAFTWSSRRLVAFVDIANVLNRRNVRNTSYAIDGAGRVLGRGGSLLPFIPSGGLVVEF*
Ga0070700_1002437881	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VLFVEVANVLNRSNLRNTNYSVDRAGRVFDTTESMIPIVPSGGFVIEF*
Ga0070694_1004163911	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0070686_1001647502	3300005544	Switchgrass Rhizosphere	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSIDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0070686_1016076952	3300005544	Switchgrass Rhizosphere	FVDVANVLNHTNVRNASYSVDRAGRVFETTESLIPIVPSGGFVIEF*
Ga0068855_1019039911	3300005563	Corn Rhizosphere	YARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0068854_1011822382	3300005578	Corn Rhizosphere	TNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0066905_1021022472	3300005713	Tropical Forest Soil	VLFVDVANVLNHTNLRNSSYSIDRAGRVFETTESLMPIVPSGGFVFEF*
Ga0068861_1004880222	3300005719	Switchgrass Rhizosphere	LRNQEYGVDRAGRVFGATESLMPIVPSGGFVIEF*
Ga0068861_1018383271	3300005719	Switchgrass Rhizosphere	DVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0068870_112908202	3300005840	Miscanthus Rhizosphere	LNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0068860_1008423051	3300005843	Switchgrass Rhizosphere	ANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0068860_1011697111	3300005843	Switchgrass Rhizosphere	NWSGRRMVLFVEVANVLNRSNLRNTNYSVDRAGRVFETTESMIPIVPSGGFMIEF*
Ga0075432_100207481	3300006058	Populus Rhizosphere	NLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0075422_100047231	3300006196	Populus Rhizosphere	RRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0079222_105121801	3300006755	Agricultural Soil	SRLDVRADHAFNWWGRRLVLFVDVANVLNRTNVRNANYFVDRTGRVLETTESLMPIVPSGGLMIEF*
Ga0075421_1005775811	3300006845	Populus Rhizosphere	TNLRNASYSVDRAGRVFETTESLLPIVPSGGLTVEF*
Ga0075430_1006589152	3300006846	Populus Rhizosphere	RRRLVLFVDVANILNRTNLRNTHYGIDSAGRVFETTESLMPIVPSGGFVIEF*
Ga0075420_1013871171	3300006853	Populus Rhizosphere	WSRRRLVLFVDVANILNRTNLRNTHYGIDSAGRVFETTESLMPIVPSGGFVIEF*
Ga0075429_1002535451	3300006880	Populus Rhizosphere	ADRAFNVSRRRLLVFVEVANVFNHKNLRNAAYSVDRAGRVFETTESLLPIVPSGGVVFEF
Ga0075429_1011928162	3300006880	Populus Rhizosphere	DVANVLNHTNLRNASYSVDRAGRVFETTESLLPIVPSGGLTVEF*
Ga0068865_1009003261	3300006881	Miscanthus Rhizosphere	RLPAYSRLDVRADRAFTWSGRRLVVFVDVANVLNHENFRNASYSIDRAGRVFETTESLMPIVPSGGLVIEF*
Ga0079215_110242632	3300006894	Agricultural Soil	AFNWSGRRLVVFVDVANVLNHTNARNSAYSVDRRGRVFGTMESLMPIVPSGGLVVEF*
Ga0079216_115361312	3300006918	Agricultural Soil	GRRLVLIVDVANILNRTNLPNSSYFVDRVGRVFETTESLMLIVPSGGLVVEF*
Ga0079219_107532971	3300006954	Agricultural Soil	NVLNRTNVRNANYFVDRTGRVLETTESLMPIVPSGGLMIEF*
Ga0079218_102578471	3300007004	Agricultural Soil	NVRNSAYSVDRRGRVFETMESLMPIVPSGGLVVEF*
Ga0079218_105041702	3300007004	Agricultural Soil	VVFVDVANILNQENLRNAGYSVDRAGRVFETMESLMPIVPSGGLVIEF*
Ga0111539_105726263	3300009094	Populus Rhizosphere	NRTNLRNVPFSVDRRGRVSGATDSLMPIVPSVGCVVEF*
Ga0111539_129380672	3300009094	Populus Rhizosphere	WSRRRLVLFVDVGNVLNRENLRNSSYSIDQRGRVFETTESLLPIVPSGGLVVEF*
Ga0075418_107638003	3300009100	Populus Rhizosphere	RADRAFTWSGGRLVLFLDVANVLNRTNVRNSSYSVDRVGRVFETTESLMPIVPSGGFVIEF*
Ga0075418_114449951	3300009100	Populus Rhizosphere	LDLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0111538_107795961	3300009156	Populus Rhizosphere	RLPAYSRLDVRADRAFNWSGRRLVVFVDVANVVNHTNERNASYFVDRAGRVFETTESLMPIVPSGGFVIEF*
Ga0111538_135098102	3300009156	Populus Rhizosphere	LDVRADRAFTWSSRRLVAFVDIANVLNQQNLRNTSYAVDGSGRVLGRPGSLLPFVPSGGLVVEF*
Ga0105242_123584772	3300009176	Miscanthus Rhizosphere	VFVDVANITNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF*
Ga0105061_10681031	3300009807	Groundwater Sand	PVYSRLDVRADRAFNWSGRRLVVFVDVANILNRTNLRNSSYSLDRAGRVFEVTESLMPIVPSGGLVIEF*
Ga0126377_120419731	3300010362	Tropical Forest Soil	AFNWWGRRLVLFIDVANMLNRTNVRNANYFVDRAGRVLETTESLMPIVPSGGLMIEF*
Ga0134124_129961702	3300010397	Terrestrial Soil	RLPAYSRFDVRADRAFNWSKRRLLVFVEVANVLSHTNLRNASYSVDRAGRVFETTESLLPIVPSGGVVFEF*
Ga0134122_125023191	3300010400	Terrestrial Soil	EVANVLNHTNLRNASYSVDRAGRVFETTESLLPIVPSDGVVFEF*
Ga0134123_108180711	3300010403	Terrestrial Soil	NWSGRRLTVFVDVANILNRTNLRNASYSVDRAGRVFETTESTMPIVPSGGLVIEF*
Ga0126317_108881942	3300011332	Soil	FASLVGERNTLRLPGYARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNTSYSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0126317_109076482	3300011332	Soil	LFVDVANVLNRTNLRNTSYSLDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0127502_111222623	3300011333	Soil	FVDVANVANRTNLRNIPGFVDRAGRVFGTTESLMPIVPSGGFVIEF*
Ga0137436_10992491	3300011423	Soil	NVLNRTNLRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0137428_12548732	3300011432	Soil	LRNASYSVERTGRVFDTTESLMPIVPSGGLVIEF*
Ga0137427_101727661	3300011445	Soil	RENLRNIPPFVDRAGRVFGTTESLMPIVPSGGFVIEF*
Ga0137465_10966831	3300012231	Soil	LRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0157334_10081852	3300012509	Soil	RFDVRADRAFNWSGRRLVLFVDVGNVLNRTNLRNSSYSIDQRGRVFETTESLLPIVPSGGLVVEF*
Ga0157299_101574461	3300012899	Soil	RRLVVFVDVANVLNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0157291_101056331	3300012902	Soil	LDVRADRAFTWASRRLVVFVDVANVLNHENLRNTSPGIDRAGRVFDATESLLPIVPSGGLVIEF*
Ga0157289_103357932	3300012903	Soil	NLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF*
Ga0157298_101708761	3300012913	Soil	NLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF*
Ga0126375_111300122	3300012948	Tropical Forest Soil	DLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYFVDRVGRVVGTTESLMPIVPSGGFVIEF*
Ga0164301_108866661	3300012960	Soil	VEPRADHAFNWWGQRLVVFVDVANVLNRTNVRNSNYFVDRAGRVMETTESLMPIVPSGGLMIEF*
Ga0157375_103893791	3300013308	Miscanthus Rhizosphere	LFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0157375_135160322	3300013308	Miscanthus Rhizosphere	LFVDVANVLNHTNVRNASYSVDRAGRVFETTESLIPIVPSGGFVIEF*
Ga0157380_104107741	3300014326	Switchgrass Rhizosphere	GRRLVLFVDIANVLNHTNLRNASYSLDRVGRVFETTESLMPIVPSGGLVFEF*
Ga0157380_123507262	3300014326	Switchgrass Rhizosphere	FTWSSRRLVLFVDVANIFNRTNLRNTPYLVDGAGRVLNVTESLMPIVPSGGFVIEF*
Ga0157377_108882052	3300014745	Miscanthus Rhizosphere	FVDVANITNRENLRNTPPFVDRAGRVFGTTESLMPIVPSGGFVIEF*
Ga0173483_106703001	3300015077	Soil	WSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF*
Ga0132258_102659721	3300015371	Arabidopsis Rhizosphere	VASHTNLRNASYVVDRAGRVFGATESLMPIVPSGGFTMEF*
Ga0132256_1001015341	3300015372	Arabidopsis Rhizosphere	FVDVANVLNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF*
Ga0132256_1029903651	3300015372	Arabidopsis Rhizosphere	KNLRNTPYSVDRTGRAFGVTETMMPIVPSAGFVVEF*
Ga0132257_1003421712	3300015373	Arabidopsis Rhizosphere	NWSGRRLVAFVEVANVLNRTNLRNTSYSIDRAGRVFETTESTLPIVPSGGLVIEF*
Ga0190270_107403271	3300018469	Soil	ANVLNRQNLRNSSYSIDRAGRVFDITDSLLPIVPSGGLVIEF
Ga0190270_112683952	3300018469	Soil	DRAFNWSSRRLVLFVEVANILNRDNRRNTPYGVNGAGRVFGATESLMPIVPSAGFVVEF
Ga0190274_137039602	3300018476	Soil	VANVLNHENLRNTSYSIDRAGRVFDATESLLPIVPSGGLIVEF
Ga0190271_101992963	3300018481	Soil	RAFTWSGRRLVVFVDIANVLNQTNLRNAGYSVDRVGRVFETTESLMPIVPSGGLVIEF
Ga0190271_108108851	3300018481	Soil	HENLRNTSYGVDRAGRVFAATESLLPIVPSGGLVIEF
Ga0207682_103928492	3300025893	Miscanthus Rhizosphere	FNWSGRRLVLFVDVANVLNHTNLRNTSYSVDRAGRVFEATESLMPIVPSGGFVIEF
Ga0207682_105279071	3300025893	Miscanthus Rhizosphere	LVVFVDVANVTNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207649_102934061	3300025920	Corn Rhizosphere	IFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207701_104991203	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	NRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207701_113326052	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LRADRAFTWSSRRLVAFVDVANVLNRQNLRNTSYSIDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207706_102357962	3300025933	Corn Rhizosphere	AFNWSGRRLVLFVDVANITNRENLRNVPPFVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207686_117803271	3300025934	Miscanthus Rhizosphere	ITNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207669_115402572	3300025937	Miscanthus Rhizosphere	VDVANITNRRNLRNTSYSVDRAGRVFDTTGSLLPIVPSGGLVVEF
Ga0207691_102273464	3300025940	Miscanthus Rhizosphere	FNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207667_116141382	3300025949	Corn Rhizosphere	YARLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSFSVDRAGRVFETTESLMPIVPSGGLVFEF
Ga0207651_120120392	3300025960	Switchgrass Rhizosphere	LLRLPPYSRLDVRADRAFTWSSRRLVAFVDIANVLNRRNVRNTSYAIDGAGRVLGRGGSLLPFIPSGGLVVEF
Ga0207712_110898921	3300025961	Switchgrass Rhizosphere	RRLVLFLDVANVLNRTNVRNSSYSADRAGRVFETTESLMPIVPSGGFVIEF
Ga0207708_102286123	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VLFVEVANVLNRSNLRNTNYSVDRAGRVFDTTESMIPIVPSGGFVIEF
Ga0207708_118002781	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRVGRVFETTESLMPIVPSGGFVFE
Ga0207641_100754071	3300026088	Switchgrass Rhizosphere	DVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0207675_1017607751	3300026118	Switchgrass Rhizosphere	VVFVDVANIFNRTNLRNQEYAVDRAGRVFGTTESLMPIVPSGGFVIEF
Ga0207683_113380281	3300026121	Miscanthus Rhizosphere	WSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0207683_116521132	3300026121	Miscanthus Rhizosphere	RQNLRNTSYSIDRAGRVFETTESLLPIVPSGGLVIEF
Ga0210000_10848801	3300027462	Arabidopsis Thaliana Rhizosphere	MVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0209968_10256473	3300027526	Arabidopsis Thaliana Rhizosphere	SRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0209970_10199333	3300027614	Arabidopsis Thaliana Rhizosphere	FVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0209387_11527261	3300027639	Agricultural Soil	FNWSGRRLVVFVDVANVLNHTNARNSAYSVDRRGRVFGTMESLMPIVPSGGLVVEF
Ga0268265_115515621	3300028380	Switchgrass Rhizosphere	RLPAYSRLDLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0268264_109264331	3300028381	Switchgrass Rhizosphere	NWSGRRMVLFVEVANVLNRSNLRNTNYSVDRAGRVFETTESMIPIVPSGGFMIEF
Ga0307498_100968502	3300031170	Soil	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNASYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0307468_1018528802	3300031740	Hardwood Forest Soil	WSGRRFVVFVDVANIANRTNLRNQEYGVDRAGRVFGATESLMPIVPSGGFVIEF
Ga0307413_119624651	3300031824	Rhizosphere	IDVANVLNRTNLRNGSYSLDRAGRVFEATESLMPIVSSGGLVFEF
Ga0310892_111167031	3300031858	Soil	SSRRLVLFVDVANIFNRTNLRNTPYGIDRAGRVFNPTESLLPIVPSGGLVIEF
Ga0310901_103891172	3300031940	Soil	VANVLNRTNVRNASYSVDRAGRVFETTESLMPIVPSGGFVIEF
Ga0307409_1024954182	3300031995	Rhizosphere	ARLDVRADRAFNWSGRRLVLFIDVANVLNRTNLRNGSYSLDRAGRVFEATESLMPIVPSGGLVFEF
Ga0310903_107402522	3300032000	Soil	PAYSRLDVRADRAFTWSGGRLVLFLDVANVLNRTNVRNSSYSVDRVGRVFETTESLMPIVPSGGFVIEF
Ga0310897_105255891	3300032003	Soil	ANVLNRTNLRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0310899_103526751	3300032017	Soil	VLFVDVANITNRENLRNIPPFVDRAGRVFGTTESLMPIVPSGGFVIEF
Ga0310890_101581582	3300032075	Soil	DRAFNWSGRRLVLFVDVANITNRENLRNIPPFVDRAGRVFGTTESLMPIVPSGGFVIEF
Ga0315912_101389371	3300032157	Soil	DVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSIDRVGRVFDTMESLMPIVPSGGFVFEF
Ga0315912_104679771	3300032157	Soil	AYARLDVRADRAFNWSSRRLVVFVDVANVLNRRNLRNTSYTIDRAGRVFDTMGSLLPIVPSGGLVIEF
Ga0310889_101736351	3300032179	Soil	AYSRLDVRADRAFNWSGRRLVLFVDVANVLNRTNLRNSSYSVDRFGRVFETTESLMPIVPSGGFVFEF
Ga0310812_103029923	3300032421	Soil	DLRADRAFNWSSRRMVLFVDVANIFNRTNLRNTPYGVDRVGRVFGTTESLMPIVPSGGFVIEF
Ga0364923_0025780_3_203	3300034690	Sediment	SRLDVRADRGFTWSGKRLVVFVEVANVLNRQNLRNTSYSIDGAGRVLGRKGTLLPIVPSGGFVIEF