NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F065764

Metagenome / Metatranscriptome Family F065764

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F065764
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 101 residues
Representative Sequence MTPRWSTASIRVRLTGWYTVVLSLMLVVYATATFVAVRQEFFEQLDDQLHDDFETAEGFLAPTPDGRIMWSGDRRHDPDNDDDRGSDVWSASGEQIYRSGAS
Number of Associated Samples 105
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 0.79 %
% of genes from short scaffolds (< 2000 bps) 1.57 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (98.425 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(10.236 % of family members)
Environment Ontology (ENVO) Unclassified
(32.283 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(44.882 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.
1E4B_08268700
2F47_10715820
3JGI1358J11329_100948771
4C688J18823_101179711
5Ga0055498_100312232
6Ga0062593_1003269913
7Ga0062592_1012542421
8Ga0066395_103275731
9Ga0066395_107963012
10Ga0066688_109498631
11Ga0066678_100195781
12Ga0066676_111789841
13Ga0070676_114010632
14Ga0066388_1067310182
15Ga0070660_1003730782
16Ga0070669_1009282531
17Ga0070671_1017114962
18Ga0070671_1020706081
19Ga0070713_1023983611
20Ga0066686_102779091
21Ga0066686_103139592
22Ga0070678_1003367383
23Ga0070698_1000462181
24Ga0070699_1001111096
25Ga0070697_1001909181
26Ga0070697_1006362032
27Ga0070686_1019668152
28Ga0066707_105585812
29Ga0066704_103100972
30Ga0066704_106275072
31Ga0066703_104168112
32Ga0068857_1014477751
33Ga0068859_1023199402
34Ga0066903_1010332753
35Ga0066903_1037142311
36Ga0066903_1040486412
37Ga0066903_1054396781
38Ga0066903_1067470861
39Ga0068851_110956241
40Ga0068860_1013255802
41Ga0068860_1018021281
42Ga0070717_111880941
43Ga0075432_100496793
44Ga0074051_112726791
45Ga0066665_110282371
46Ga0066659_103002633
47Ga0075434_1015430101
48Ga0073928_107844631
49Ga0075426_105401962
50Ga0066710_1027379581
51Ga0099830_107463121
52Ga0099830_112677082
53Ga0099827_108955422
54Ga0099827_114979541
55Ga0105245_121009202
56Ga0105247_110344512
57Ga0114129_118003701
58Ga0105243_114220691
59Ga0075423_115443201
60Ga0105242_106541531
61Ga0105248_115392591
62Ga0105248_122418092
63Ga0105082_10809352
64Ga0126313_105674091
65Ga0126305_109836901
66Ga0126384_111751682
67Ga0126382_104424132
68Ga0126382_119253741
69Ga0134084_101234042
70Ga0126372_131182242
71Ga0126378_123728172
72Ga0126377_133595012
73Ga0134127_125750472
74Ga0134122_103224573
75Ga0134122_104412702
76Ga0134122_131190902
77Ga0134121_118355791
78Ga0134121_132540931
79Ga0134123_115092202
80Ga0105246_113287572
81Ga0137393_105000541
82Ga0137393_105836561
83Ga0137388_113955161
84Ga0137399_107579831
85Ga0137377_116945221
86Ga0137371_105041631
87Ga0164299_108657862
88Ga0134110_101031444
89Ga0157379_124460811
90Ga0137418_105790452
91Ga0132258_124346361
92Ga0132256_1020768681
93Ga0132255_1039089112
94Ga0184604_102557351
95Ga0066667_102743971
96Ga0066667_103919691
97Ga0210384_111735612
98Ga0247671_10924571
99Ga0207656_101514062
100Ga0207662_108901402
101Ga0207652_101066981
102Ga0207687_104934502
103Ga0207711_112719261
104Ga0207711_118913021
105Ga0207677_122126542
106Ga0207641_117823611
107Ga0207676_111936032
108Ga0207676_117787231
109Ga0207675_1016167132
110Ga0209234_12885771
111Ga0209265_11867571
112Ga0209474_103072741
113Ga0179587_108930682
114Ga0209465_101329291
115Ga0247663_10817311
116Ga0307311_100986342
117Ga0307310_103901862
118Ga0307277_102537341
119Ga0310915_108383951
120Ga0318561_105882611
121Ga0307469_114656892
122Ga0307469_123998072
123Ga0310909_112706521
124Ga0310897_106588751
125Ga0318524_103637112
126Ga0318553_105322052
127Ga0310914_110861151
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 41.54%    β-sheet: 10.00%    Coil/Unstructured: 48.46%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100MTPRWSTASIRVRLTGWYTVVLSLMLVVYATATFVAVRQEFFEQLDDQLHDDFETAEGFLAPTPDGRIMWSGDRRHDPDNDDDRGSDVWSASGEQIYRSGASExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered RegionsTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
98.4%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater
Natural And Restored Wetlands
Iron-Sulfur Acid Spring
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Serpentine Soil
Grasslands Soil
Soil
Soil
Grasslands Soil
Grass Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Groundwater Sand
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
3.1%9.4%5.5%4.7%10.2%3.1%7.1%7.1%4.7%5.5%3.9%3.9%3.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E4B_082687002170459004Grass SoilVTAPWSAASIRVRLTGWYAVVLSLMLVVYASATFLAVRNEFLEQLDDQLHDDFETGEGFLAPASDGRVAWSAGRRHDPDDDEDRGSDVWAANGDQ
F47_107158202170459009Grass SoilLSRWSDASIRVRLTGWYAIVLSLMLVVYATATFLAVRHEFVEQLDDQLHDDFESAEGYLAPAPDGRVIWSGDRRHDPDNDEDRGSDVWSANGDQIYRSGASAALPPVRWRTAPTEV
JGI1358J11329_1009487713300000571GroundwaterMTPRWSTTSIRIRLTGWYTVVLFLMLVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPTAEGRIVWSGDRRHDPDNDEDRGSDVWSANGEQIYRSGASAALPP
C688J18823_1011797113300001686SoilVNVPWSAASIRVKMTGWYAVALSLMLVVYAAATFFAVRQEFQESLDDQLHDDFEAAEAVLAPAAGGRVAWSGDRHHDSGDDEDRGSDVWSPSGEQIGRW
Ga0055498_1003122323300004058Natural And Restored WetlandsVRIRWAAASIRMRLTGWYVLALCLMLVVYASAIFISVRHEFFEQLDDQLHEDFESAEGLLSRTADGRMLVAADGHHDPDDDESREIEVWSSGGEPLYRSSMSS
Ga0062593_10032699133300004114SoilMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQLDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDGD
Ga0062592_10125424213300004480SoilMSAPWSAASIRVRLTGWYAMVLSLMLVVYAGATFVAVRQEFQEQLDDQLHDDFESAEGLLTPTSDGRIAWSGDRHH
Ga0066395_1032757313300004633Tropical Forest SoilMSWWSTASIRVRLTGWYGVVLFLMMAIYATATFVAVRHEFLEQLDDQLHDDFEAAEGHLIAGADGRIVWSGERHHDPDSDEERGSDVWSASGEPIYRSTASASLPPAAIAAATA
Ga0066395_1079630123300004633Tropical Forest SoilMTAWGAAAPIRVRLTAWYTTVLTLMLVVYAAATFVAVRHEFLEQLDDELHADFEEAEGLLAPSVDGRVSLPGDRHYDADSEADRGSDVWSA
Ga0066688_1094986313300005178SoilMSRWSTASIRVRLTGWYTVVLFLMMVVYATATFLAVRHEFLEQLDAQLYDDFETAEGFLAPAADGRIVWSGDRHHDPDSDEERGNDVWSASGEPIYRSNASAALPPAAIAAATATPRYESVVT
Ga0066678_1001957813300005181SoilMSRWSTASIRVRLTGWYTVVLFLMMVVYAMATFLAVRHEFLEQLDAQLCDDFETAEGFLAPAADGRIVWSGDRHHDPDNDEERGNDVWSASGEPIYRSNASAALPPAAIAAATATPRYES
Ga0066676_1117898413300005186SoilMTRWSAASIRVRLTALYAAVLALMMVVYATATFVAVRHEFLEQFDDQLHDDFEAAEGYLSAISDGRVAWAGESRHDPDNDQDRGSDVWLASGQQVYRSGASASLPPVALAATTAQPRYESIVASGRP
Ga0070676_1140106323300005328Miscanthus RhizosphereMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQLDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDGDEDRGLDVWSAGGDRLARVGASEA
Ga0066388_10673101823300005332Tropical Forest SoilVKWSAPSIRVRLTSWYSVVLALMLIVYATVTFLAVRHEFFEQLEDQLHDDFETAEGFLVPAADGRIVWASDRYHDPDEDEGRGIDVW
Ga0070660_10037307823300005339Corn RhizosphereMKPGWSAASIRVRLTTWYTVVLFLMMVLYAAATFVAVRHEFFEQFDDQVHDDFESAEAQLERTPSGQVAWIGEPHHDSEEEGDRAADVWS
Ga0070669_10092825313300005353Switchgrass RhizosphereMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQLDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDGDEDRGLDVWSAGGERLARVGASEALPPAAVANAGS
Ga0070671_10171149623300005355Switchgrass RhizosphereMAALSIRFRLTGWYSGVLFVMLVAYASATFIAVRHEFLEQLDDQLHDDFETAEGFLSASPNGRIAWSGDRHHDPDEDEDRGSDVWAATGEPLYRSGASKALPPV
Ga0070671_10207060813300005355Switchgrass RhizosphereMRAPWSAASIRARLTGWYAVVLSLMLVVYATATFVAVRQEFREQLDHQLHDDFESAESFLTPTPDGRVAWSGDRHHDPDNDEDRGSDVWSPNGDRIGRSGASAALPPVALATAGAQPHYE
Ga0070713_10239836113300005436Corn, Switchgrass And Miscanthus RhizosphereVRWTAPSIRIRLTAWYSVVLFLMLAVYATVTYLAVRHEFFEQLEVQLHDDFETAEGLLVPAADGSVAWASERYHDPDRDDDHGIDVWAATGQPIYRSGAS
Ga0066686_1027790913300005446SoilMSRWSTASIRVRLTGWYTVVLFLMMVVYAMATFLAVRHEFLEQLDAQLCDDFETAEGFLAPAADGRIVWSGDRHHDPDNDEERGNDV
Ga0066686_1031395923300005446SoilMSWWSTASIRVRLTTWYTVGLSLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPDGRIAWSSDRHHDPDNDEDRGSDVWSAGGEAIYRS
Ga0070678_10033673833300005456Miscanthus RhizosphereMTAWAARSIRARLTGWYALVLTVMLIVYATATYVAVRHEFLEQLDSQLHDDFETAEGLLTWMPDGRVAWIGDRHLDPDDDEVR
Ga0070698_10004621813300005471Corn, Switchgrass And Miscanthus RhizosphereMTSWWSTASIRARLTGLYAIVLSLMLVIYATATFVAVRHEFLEQFDEQLHHDFETAEGFLAPTTHGRIAWSGDGHHDPDY
Ga0070699_10011110963300005518Corn, Switchgrass And Miscanthus RhizosphereMTPRWSTASIRVQLTGWYTVVLCLMLVVYASATFVAVRHEFAEQFDEQLHDDFETAEGFLTPTPDGRIVWSGDRRHDPDNDEDRGSDVW
Ga0070697_10019091813300005536Corn, Switchgrass And Miscanthus RhizosphereVTPRWSTASIRVRLTGWYALVLCLMLMVYASATFVAVRHEFGEQFDDQLHDDFETAEGFLKPTPDGRMVWSGDRYHDPDNDEDRGSDAWSTQGEPIYRSGASAALPPV
Ga0070697_10063620323300005536Corn, Switchgrass And Miscanthus RhizosphereMSWWSTASIRVRLTTWYTAGLSLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPDGLIAWSSDRHHDPDNDEDRGSDVWSAGGEPIYRSRASA
Ga0070686_10196681523300005544Switchgrass RhizosphereMTAPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFFEQLDDQIHDDFESVEGLLRPAPDGRVVWAGDRPRDPDDDEDRGSEVWSAAGDPIHRAGAAAAWPPVAAATIGGP
Ga0066707_1055858123300005556SoilMSWWSTASIRVRLTTWYTVGLSLMMVVYATATFVAVRHEFLEQLDDQLHEDFETAEGFLAPAPDGRIAWSSDRLHDRDNDEDRG
Ga0066704_1031009723300005557SoilMHWWSTPSIRVRLTGWYTVVLFLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPDGRIAWSGDRHHDPDNDEARGSEVWSAGGEPIYRSSASVALPAVAIAAATTTPRYESVV
Ga0066704_1062750723300005557SoilMMRWWSTASIRVRLTGWYTAILLLMLVVYATATFIAVRHEFLEQLDEQLHDDFEAAEGVLTPTADGRIAWSGDRHHDPDNDEYRGADVWSATGEP
Ga0066703_1041681123300005568SoilMTSRWSTASIRVRLTGWYTVVLFLMLALYATATFVAVRHEFLEQLDDQLHDDFETAEGFLTPTSDGRIVWSGDRHHDPDTDEDRGSDVWSASGEQIYRSGASAVLPPVAVAATTAQPRYE
Ga0068857_10144777513300005577Corn RhizosphereMMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQLDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDGDEDRGLDVWSAGGERLARVGASEALPPAAV
Ga0068859_10231994023300005617Switchgrass RhizosphereMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQLDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDG
Ga0066903_10103327533300005764Tropical Forest SoilMTPWSKASIRVRLTGWYSVVLASMLVVYATATFLAMRHEFYEQFDDQLHDDFETAEGRLTAAYDGSRVAVGDRHHDSDAEDRGTEVWSANGELSYRSDS
Ga0066903_10371423113300005764Tropical Forest SoilVRLTGWYSVVLVLMMVVYATATFLAVRHEFLEQLDDQLSDDFETAEGFLAPAADGRIVWTGDRHHDPDYDEERGSDVWSASGEP
Ga0066903_10404864123300005764Tropical Forest SoilMPWWSTASIRVRLTGWYSVVLFLMMVVYATATFLAVRHEFLEQLDDQLHDDFETAEGHLAPAADGRIVWSGDGHHDPGNDEERGSDVWSASGEPIY
Ga0066903_10543967813300005764Tropical Forest SoilMSRWSTASIRVRLTGWYTVVLLLMMVVYATATFLAVRHEFLEQLDAQLYDDFETAEGFLAPAADGRIVWSGDHHHDPDNDEER
Ga0066903_10674708613300005764Tropical Forest SoilMSWVPPSIRVRLTGWYSVVLFLMLVVYATATYLAVRQEFFEQLEDQLHDDFESAEGFLVPAADGHIVWASDRYHDPDEDEDR
Ga0068851_1109562413300005834Corn RhizosphereMRVPWSGASIRARLTGWYAVVLSLMLVVYAAATFVAVRQEFQEQLDDQLHDDFESSEGSLMSTPDGQVAWSGDRHHDPNDDADRGGDVWSPNGDQIGR
Ga0068860_10132558023300005843Switchgrass RhizosphereMTAPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFFEQLDDQIHDDFESVEGLLRPAPDGRVVWAGDRPRDPDDDEDRGSEVWSAAGDPIHRAGAAAA
Ga0068860_10180212813300005843Switchgrass RhizosphereMKGPWSSASIRVQLTGWYAIVLSLMLVAYAAATFFAVRQEFGEQLDDQLHDDFESAEGFLTPTPDGRVAMSGDRHHDPDNDEDRGSDVWSPNGEQIGRSGASAALPPVALATA
Ga0070717_1118809413300006028Corn, Switchgrass And Miscanthus RhizosphereMTPRWSTASIRVRLTGWYTVALSLMLMVYAAATFVAVRHEFLEQFDEQLHDDFETAEGFLTPTPEGRILWSGDRRHDPDNDEDRGSDVWAANGEPIYRSG
Ga0075432_1004967933300006058Populus RhizosphereMSRWSTASIRVRLTGWYTVVLFLMMVVYATATFLAVRHEFLEQLDAQLYDDFETAEGFLAPAGDGRIVWSGDCHHDPDNDEERGNDVWSASGEPIYRSRAS
Ga0074051_1127267913300006572SoilVSTPWSAASIRVRLTGWYAVVLSLMLVVYASATFLAVRNEFLEQLDDQLHDDFETAEGFLAPAPDGRVAWSAGRRHDPDDDEDRGSDVWAANGDQIYRSGASASLPPAAVATAGAQGRYE
Ga0066665_1102823713300006796SoilMTGWSAASIRIRLTAWYALVLGLMLVVYATATFVAVRHEFLEQFDDQLHDDFEAAEGYLSATDDGRVAWSGESRHDPDNDQD
Ga0066659_1030026333300006797SoilMHWWSTPSIRVRLTGWYTVVLFLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPDGRIAWSGDRHHDPDNDEA
Ga0075434_10154301013300006871Populus RhizosphereMSRWSAASIRVRLTGWYTVVLFLMLVVYASATFLAVRHEFLEQLDDQLHDDFETAEGFLAPAADGRIVWAGDRHHDPDYDEERGSDVWS
Ga0073928_1078446313300006893Iron-Sulfur Acid SpringMKGTPATPQRWWSTAPIRVRLTGWYSIVLSLMLVVYASATFVAVRHEFFEQLDDQLRDDFEIAEGFLATAPGGQISWSGDRHHDLDGDDDRAIEAWAGNGEPFYR
Ga0075426_1054019623300006903Populus RhizosphereMRWWSTASIRLRMTTWYVVAMCLMLVVYASATFIAVRHEFLEQLDDQLHDDFETAERPLASTAGGPVAWNGEGRHDPGDADR
Ga0066710_10273795813300009012Grasslands SoilMKLGRTASSIRVRLTGWYAVVLTMMMIVYAAATFVAVRHEFFEQIDEQLHRDLETAEGRFPRTPEERVVWAGDPRRDRESDEARVYEVWSARGEVI
Ga0099830_1074631213300009088Vadose Zone SoilMTPRWSTASIRVRLTGWYTVVLSLMLVVYATATFVAVRQEFFEQLDDQLHDDFETAEGFLAPTPDGRIMWSGDRRHDPDNDDDRGSDVWSASGEQIYRSGAS
Ga0099830_1126770823300009088Vadose Zone SoilMTWWAAPSIRQRLTAWYTVALVLMMAVYATATFVAVRHEFLEQLDDQLHDDFETAEGYVTPMADGRLVWSGDRHHDPDNDEDRGSDVWSATGESIYR
Ga0099827_1089554223300009090Vadose Zone SoilMTPRWSTASIRVRLTGWYAVVLSLMLVVYATATFVAVRHEFLEQLDEQLHDEFETAEGFLTATPDGRIVWAGDRHHDPDNDEDRGSDVWSASG
Ga0099827_1149795413300009090Vadose Zone SoilVLFLMLVVYATATFVAVRHEFIEQLDDQLHDDHETAQGFLTPTTSGRIEWSGDRRHDPDNDEDRGSDVWSASGEQIYRSGASAVLPPVALAATSAQPRYESIVANGH
Ga0105245_1210092023300009098Miscanthus RhizosphereMTPRWSTASIRVRLTAWYAVVLALMLVVYATATFVAVRHEFFEQFDDQLHDDFEAAEGFLTPSDGGRIACSGDGRHDPDNDEDRGSDVWLAS
Ga0105247_1103445123300009101Switchgrass RhizosphereMKGPWSSASIRVQLTGWYAIVLSLMLVAYAAATFFAVRQEFGEQLDDQLHDDFESAEGFLTPTPDGRVALSGDRHHDPDNDED
Ga0114129_1180037013300009147Populus RhizosphereMSPWSTASIRVRLTGWYSVVLFLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPATDGRIAWSGDRHHDPDNDEERGSDVWSASGEPIYRSSASAVLPPAAIAAATATPRYESLVTNRRR
Ga0105243_1142206913300009148Miscanthus RhizosphereMPRWSTASIRVRLTGWYALVLCLMLMVYASATFVAVRHEFGEQFDDQLHDDFETAEGFLKPTPDGRIVWSGDRYHDPDNDEDRGSDVW
Ga0075423_1154432013300009162Populus RhizosphereMRLRWTAPSIRVRLTGWYALVLTVMMIVYAAATFVAVRHEFLEQLDRQLHDEFETAEGLLIRTPDGRVAWTGDRHHDPDSEEARVYEVWSAD
Ga0105242_1065415313300009176Miscanthus RhizosphereMTAPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFFEQLDDQIHDDFESVEGLLRPAPDGQVVWTGDRPHDPDDDEDRGSEVWSAAGDPIHRAGPAAAWPPVAAATIGGPPRYESMVSGGHPWRTL
Ga0105248_1153925913300009177Switchgrass RhizosphereMTAPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFFEQLDDQIHDDFESVEGLLRPAPDGRVVWAGDRPRDPDDDEDRGSEVWSAAGDPIHRAGAAAAWPPVAAATI
Ga0105248_1224180923300009177Switchgrass RhizosphereVPWSAASIRVRLTGWYAVVLTLMLVIYATATFLAVRQEFQEQLDDQLHDDFESAEGFLTPAPDGRVAWSGDRHHDPDNDEDRGSDVWSPNGDRIGRSGASAALPPVALA
Ga0105082_108093523300009814Groundwater SandMTQRWSTASIRVRLTGWYTVVLSLMLMVYATATFVAVRHEFLEQLDEQLHDDFETAEGFLTPTPEGRIAWSGDRHQDPDNAEDRGS
Ga0126313_1056740913300009840Serpentine SoilMFRWSTASIRVRLTGWYTVVLFLMMVVYATATFLAVRHEFLEQLDAQLYDDFESAEGFLAPAADGRIVWSGDRHHDPDNDEERGNDVWSASGVPIYRSNASAALPPAAIAATTATTHYESVVTNG
Ga0126305_1098369013300010036Serpentine SoilMTVPRWAPSIRLRLTGWYTLILSVMLVMYASATFVAVRHEFLEQLDEDLHEDFEAAEGLLRRTADGRIAWVLDRNEGVDADYDKGSDIWSL
Ga0126384_1117516823300010046Tropical Forest SoilMAAPSIRLRLTSWYSVVLFLMLVVYATATFAAVRHEFFEQLDDQLHDDFETAEGFLSASPDGRVAWSGERHRDPDDGEDRGSDAWAASGEQIYRSGASSALPPVALATTTESTSVSAEA*
Ga0126382_1044241323300010047Tropical Forest SoilMSWSTASIRVRLTGWYIVALFLMMVVYATATFFAVRHEFLEQLDEQLFDDFETAEGFLTPGADGRIVWSSDRHHDPDNDEERGTDVWSASGEPIYRSRAS
Ga0126382_1192537413300010047Tropical Forest SoilMSRWSTASIRVRLTGWYTVVLFLMMVVYATATFLAVRHEFLEQLDDQLHDDFETAEGFLTPAADGRIVRAGDRHHDPGNDEERGSDLWSASGEPIYRSSASAALPPAAIAAATAA
Ga0134084_1012340423300010322Grasslands SoilMSWWSTASIRVRLTTWYTVGLSLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPGGRIAWSSDRHHDPDNDEDRGSDVWSAGGEAIYRS
Ga0126372_1311822423300010360Tropical Forest SoilMRWWSAASIRVRLTTWYVVAMCLMLIVYASATFVAVRHEFLEQLDDQLRDDFETAEGFVSPGVGGRITWTGDRRHDPD
Ga0126378_1237281723300010361Tropical Forest SoilMRWWSAASIRVRLTTWYVVAMCLMLIVYASATFVAVRHEFLEQLDDQLRDDFETAEGFVSPGVGGRITWTGDRRHDPDEESPRGSDVWTLDGAEIFRSEASASLPPVGPAS
Ga0126377_1335950123300010362Tropical Forest SoilMSLPWTTPSIRVRLTGWYAVVLTVMMIVYATATFVAVRHEFLEQLDDQLHDDFETAEGLLIRTADGRIAWNGDRHHDPDNGEARVYE
Ga0134127_1257504723300010399Terrestrial SoilVTPRWSTASIRVRLTGWYALVLCLMLMVYASATFVAVRHEFGEQFDEQLHDDFETAEGFLTPTPAGRIVWSGDRYHDPDNDEDRGSDVWSAQGEPIYRS
Ga0134122_1032245733300010400Terrestrial SoilMKGPWSAASIRVQLTGWYAIVLSLMLVVYAAATFVAVRQEFGEQLDDQLHDDFESAEGFLTPAPDGRVAVSGDRHHDPDDDE
Ga0134122_1044127023300010400Terrestrial SoilMPRWSTASIRVRLTGWYALVLCLMLMVYASATFVAVRHEFGEQFDDQLHDDFETAEGFLRPTPDGRIVWSGDRYHDPDNDEDRGSDVWSTQGE
Ga0134122_1311909023300010400Terrestrial SoilVPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFQEQLDDQLHDDFESAEGFLTPTPDGRVAWSGDRHH
Ga0134121_1183557913300010401Terrestrial SoilMTPRWSTASIRVRLTGWYTVVLSLMLVVYATATFVAVRHEFLEQLDEQLHDDFEAAEGFLAPAPDGRIAWSGDRHHDPDNDED
Ga0134121_1325409313300010401Terrestrial SoilVTPRWSTASIRVRLTGWYALVLCLMLMVYASATFVAVRHEFGEQFDDQLHDDFETAEGFLKPTPDGRMVWSGDRYHDPDNDEDRGSDAWSTQGEPIY
Ga0134123_1150922023300010403Terrestrial SoilMPRWSTASIRVRLTGWYALVLCLMLMVYASATFVAVRHEFGEQFDDQLHDDFETAEGFLKPTPDGRMVWSGDRYHDPDNDEDRGSDVWSTQGEPIYRSGASAALPPVALAAATAQ
Ga0105246_1132875723300011119Miscanthus RhizosphereMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQLDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDGDEDRGLDVWSAGGERLARVGASEALPPAAVANAGSEAHYESITAGGRRWR
Ga0137393_1050005413300011271Vadose Zone SoilMTPRWSTASIRVRLTGWYTVVLSLMLVVYATATFVAVRQEFFEQLDDQLHDDFETAEGFLAPTPDGRIMWSGDRRHDPDNDDDRGSDVWSASGEQIYRSGASAALPPVALAATR
Ga0137393_1058365613300011271Vadose Zone SoilMTPWWSTASIRVRLTGWYIVVLFLMLVVYATATFVAVRHEFLEQLDDQLHDDFEAAEGFLALTPDGRIAWSGDHRHDPDNDEDRGSDVWSANGEEIYRSGASASLPPIVLAATTAQARYE
Ga0137388_1139551613300012189Vadose Zone SoilMTPRWSTASIRVRLTGWYAVVLSLMLVVYATATFVAVRHEFLEQLDEQLHDEFETAEGFLTATPDGRIVWAGDRHHDPDNDEDRGSDVWSASGEPIYRSGVSAALPPVAMAATSAQP
Ga0137399_1075798313300012203Vadose Zone SoilMTPWWSTASIRVRLTGWYTVVLFLMLVVYATATFVAVRHEFLEQLDDQLHDDFEAAEGFLALAPYGRIAWSGDRRHDPDNDEDRGSDVWSANGEEIYRSGAS
Ga0137377_1169452213300012211Vadose Zone SoilMTGWSAASIRIRLTALYAVVLALMMVVYATATFVAVRHEFLEQFDDQLHDDFEAAEGYLSATDDGRVAWSGESRHDPDNDQDRGSDVWLVSGQQVYRSGASASLPPVALAATTAQ
Ga0137371_1050416313300012356Vadose Zone SoilMSWWSTASIRVRLTTWYTVGLSLMMVAYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPDGRIAWSSDRHHDPDNDEDRGSDVWSAGGEAIYRSS
Ga0164299_1086578623300012958SoilMAAPSIRFRLTGWYSLVLFLMLVVYASATFIAVRHEFLEQLDDQLHDDFETAEGFLSASPNGRIAWSADRHHDPDEDEDRGS
Ga0134110_1010314443300012975Grasslands SoilMTPWWSTASIRVQLTAWYAVVLSLMLVVYATATFVAVRHEFLEQFDDQLHGDFEAAEGFLTPAGDGRIAWFGDRHHDPDNDEDRGSDVWLASGEQVYRSGASASLPPVALAATTAQPRYESLVA
Ga0157379_1244608113300014968Switchgrass RhizosphereMTPPWSTASIRVQLTGWYTVVLCLMLVVYATATFVAVRHEFIEQFDDQLHDDFETAEGFLKPTSDGRTVWAGEGYHDPDNDDERGSDVWSTHGD
Ga0137418_1057904523300015241Vadose Zone SoilMGRAAPSIRTRLTAWYSVALSLMLVVYATATFLAVRHEFLEQLDEQLYGDFETAEGFLAPAADGRITWAGDRYHDPDNDQDRGSDVWAPTGD
Ga0132258_1243463613300015371Arabidopsis RhizosphereVKASPASIRVRLTGWYSAVLGLMLAVYATTTYVAVRHEFLEQLDEQLHDDFEAAEELPGPVSDGRIAAPGAHHHDPGGDQDRGTDVWAGGAEPIYRSGASSGLPAVAWS
Ga0132256_10207686813300015372Arabidopsis RhizosphereMSRWSTASIRVRLTGWYTVVLFLMMVVYATATFLAVRHEFLEQLDDQLHDDFETAEGFLAPAGDGRIVWSGDRHHDPDYDEERGSDVWSASGEPIYRSSASAALPPAAIAAATA
Ga0132255_10390891123300015374Arabidopsis RhizosphereMSRWSTASIRVRLTGWYTVVLFLMMVVYATATFLAVRHEFLEQLDDQLHDDFETAEGFLAPAGDGRIAWSGDRHHDPDYDEERGTDVWSASGEPIYRSSAAAALPPQAIAAQHATPR*
Ga0184604_1025573513300018000Groundwater SedimentMTPRWSTASIRVRLTGWYTIVLCLMLVVYASATFVAVRHEFGEQFDEQLHDDFETAEGFLKPTPDGRIVWSGDRYHDPDNDEDRGSDVWSAHGEPIYRSGASAALPP
Ga0066667_1027439713300018433Grasslands SoilMSRWSTASIRVRLTGWYTVVLFLMMVVYAMATFLAVRHEFLEQLDAQLCDDFETAEGFLAPAADGRIVWSGDRHHDPDNDEERGNDVWSASGEPIYRSN
Ga0066667_1039196913300018433Grasslands SoilMHWWSTPSIRVRLTGWYTVVLFLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPDGRIAWSGDRHHDPDNDEARGSDVWSAGGEPIYRSSASVALPAVAIAAATTTPRYESVVTN
Ga0210384_1117356123300021432SoilMTPPRSAASIRVRLTGWYTVVLSLMLVVYATATFVAVRQEFFEQLDDQLHDDFETAEGFLAPTPDGRIVWSGDGRHDPDNDEDRG
Ga0247671_109245713300024284SoilMKVPFSAASIRVKMTGWYTAALSLMLIVYAAATFLAVRQEFQESLDDQLHDDFESAEGLLTPTPDGRVAWSGD
Ga0207656_1015140623300025321Corn RhizosphereMTAPWSAGSIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFFEQLDDQIHDDFESVEGFLETTPDGRVAWIGDRPHDPDYDEDRRSEVWSAGGDPIHRAGPSAPWPPAAAATI
Ga0207662_1089014023300025918Switchgrass RhizosphereMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQLDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDGDEDRGLDVWSAGGERLARVGASEALPPAAVANAGSEAHYESITA
Ga0207652_1010669813300025921Corn RhizosphereMKPGWSAASIRVRLTTWYTVVLFLMMVLYAAATFVAVRHEFFEQFDDQVHDDFESAEAQLERTPSGQVAWIGEP
Ga0207687_1049345023300025927Miscanthus RhizosphereMKGPWSSASIRVQLTGWYAIVLSLMLVAYAAATFFAVRQEFGEQLDDQLHDDFESAEGFLTPTPDGRVAMSGDRHHDPDNDEDRGSDVWSPNGEQIGRSGASAALPPVALATAGAQARYESIAAGGRP
Ga0207711_1127192613300025941Switchgrass RhizosphereMTAPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFFEQLDDQIHDDFESVEGLLRPAPDGRVVWAGDRPRDPDDDEDRGSEVWSAAGDP
Ga0207711_1189130213300025941Switchgrass RhizosphereVRVPWSAASIRVRLTGWYAVVLTLMLVIYATATFLAVRQEFQEQLDDQLHDDFESAEGFLTPAPDGRVAWSGDRHHDPDNDEDRGSDVWSPNGDRIGRSGASAALPPVALATAGAQPHYESIVA
Ga0207677_1221265423300026023Miscanthus RhizosphereVTPWSAASIRVRLTGRYAVVLSLMLVVYATATFLAVRHEFVEQLDEQLYDEFETAEGFLTPTSDGRIVWSGDQRHDPDNDEDRGNDVWSASGEPIYRSGASAALPPVALAA
Ga0207641_1178236113300026088Switchgrass RhizosphereMRRWAAASIRVRLTGWYAAVLGLTLVVYASATFVAVRHEFMEQRDDQLHDDFEAAEGFLTSTPDGPVAWSGPADRDHDGDED
Ga0207676_1119360323300026095Switchgrass RhizosphereMMRRWAAASIRVRLTGWYAAVLGLMLVVYAGATFLAVRHEFLEQLDDQLHDDFEAAEGFLTSTPDGRVGWSGPAYRDHDSDEDRGLDAWSAGGDQIVRAGASDSLPPVALATA
Ga0207676_1177872313300026095Switchgrass RhizosphereMMRRWAAASIRVRLTGWYAAVLGLMLVVYAGATFAAVRHEFLEQLDAQLHDDFETAEGFLTPAADGRVTWSGPAYRDPDSDEDRGIDAWSANGDRIVRVGAAEALAPAAVATRSTRPFYESLVGGGR
Ga0207675_10161671323300026118Switchgrass RhizosphereMKVPWSPASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFQEQLDDQLHDDFESAEGFLTPTPDGRVAWSGVGSESVNGA
Ga0209234_128857713300026295Grasslands SoilVTRGGRPQSIRVRLTGWYTAVLFLMLVVYAAATFVAVRHEFLEQLDEQLHDDFEEAEGFLTAAPDGRVVLSGDHHRDRDGDEYRGADAWSATGEPIYRSGAS
Ga0209265_118675713300026308SoilMHWWSTPSIRVRLTGWYTVVLFLMMVVYATATFVAVRHEFLEQLDDQLHDDFETAEGFLAPAPDGRIAWSGDRHHDPDNDEARGSDVWSAGGEPIYRSSASVALPAVAIAAATTTPRYESVVTNGSR
Ga0209474_1030727413300026550SoilMTRWSNASIRVRLTSWYSLVLALMLVVYATATFLAVRHEFYEQFDDQLHDDFETAEGRLMAAADGRVVPVGDRHHDPDAEDRGTEVWSANGELTYRSDSTPTLPPIVPAAATNTYRYE
Ga0179587_1089306823300026557Vadose Zone SoilVTPWSAASIRVRLTGWYAVVLSLMLVVYATATFLAVWHEFVEQLDEQLHDEFETAEGFLTPTPDGRIVWSGDTRHDPDNDEDRGSDVW
Ga0209465_1013292913300027874Tropical Forest SoilMSWWSTASIRVRLTGWYGVVLFLMMAIYATATFVAVRHEFLEQLDDQLHDDFEAAEGHLIAGADGRIVWSGERHHDPDSDEERGSDVWSVSGEPIYRSTASASLATPTRFTRSSLRPSSA
Ga0247663_108173113300028145SoilMTAPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFFEQLDDQIHDDFESVEGLLKTTPDGRVVWAGDRPRDPD
Ga0307311_1009863423300028716SoilMTPRWSTASIRVHLTGWYTIVLCLMLVVYATATFVAVRHEFIEQFDDQLHDDFETAEGFLKPTSDGRIVWAGDRYHDPDNDEDR
Ga0307310_1039018623300028824SoilMKVPWSAASIRVRLTGWYAVVLSLMLVVYATATFVAVRQEFREQLDDQLHDDFESAEGFLTPTPDGRVAWSADRHHDPDNDEDRSSDVW
Ga0307277_1025373413300028881SoilMTPRWSTASIRVRLTGWYTVVLCLMLLVYASATFVAVRHEFGEQFDEQLHDDFETAEGFLKPTPDGRIVWSGDRYHDPDNDEDRGSDVWSTNGEPIYR
Ga0310915_1083839513300031573SoilVRWSSPSIRARLTGWYSVALFLMLVVYATATYWAVRHEFFESLEDQLHDDFESAEGFLVPAADGHIVWASDRYHDPDDDADRGIDVWAASGEPIYRSGASTAIPPVALASA
Ga0318561_1058826113300031679SoilVRWSSPSIRARLTGWYSVALFLMLVVYATATYWAVRHEFFESLEDQLHDDFESAEGFLVPAADGHIVWASDRYHDPDDDADRGIDVWAASGEPIYRSGASTAIPPVALA
Ga0307469_1146568923300031720Hardwood Forest SoilMRPQWSTASIRVRLTGWYTVVLLLMLVVYASATFVAVRHEFLEQFDEQLHDDFETAEGFLTPAPEGRIVWSGDRHHDPDNDEDRGSDVWAVNGEQIYRSGSSA
Ga0307469_1239980723300031720Hardwood Forest SoilMRRSAPSIRARLTAWYSVALSLMLLVYATATFLAVRREFLEQLDEQLYSDFETAEGFLLPAADGRITLVGYHDPDNDQDRGSDVWAPTGEPIYRSATSAALAPAALPASAAPRYETIAAN
Ga0310909_1127065213300031947SoilMKWSAPSIRFRLTGWYSVVLFLMLVVYATATYLAVRHEFFEQLEDQLHDDFETAEGFLGPAADGHIVWASERYHDPDEDEDKGIDVWAVGGEPIYRSGASKALPPVALPATTAAARYDSLEIGGRT
Ga0310897_1065887513300032003SoilMTAWAARSIRARLTGWYALVLTVMLIVYATATYVAVRHEFLEQLDSQLHDDFETAEGLLTWMPDGRVAWIGDRHLDPDDDEVRI
Ga0318524_1036371123300032067SoilVRWVAPSIRVRLTGWYSLVLFLMLAVYASATYLAVRHEFFEQLEDQLHDDFESAEGFLVPTADGHIAWATERHHDPDEDEDRGIDVWAADGQPIYRSG
Ga0318553_1053220523300032068SoilMAPSIRLRLTGWYSLVLFLMLLVYASATYLAVRHEFFEQLEDQLHDDFESAEGFLVPTADGHIAWASERHHDTDEDEDRG
Ga0310914_1108611513300033289SoilMKWSAPSIRFRLTGWYSVVLFLMLVVYATATYLAVRHEFFEQLEDQLHDDFETAEAFLGPAADGHIVWASERYHDPDEDEDKGI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.