Metagenome / Metatranscriptome Family F065681

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065681
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	40 residues
Representative Sequence	EEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNA
Number of Associated Samples	111
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	96.85 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.268 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (20.472 % of family members)
Environment Ontology (ENVO)	Unclassified (56.693 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (78.740 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.52% β-sheet: 0.00% Coil/Unstructured: 48.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF12957	DUF3846	7.87
PF03237	Terminase_6N	1.57
PF13578	Methyltransf_24	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
All Organisms	root	All Organisms	41.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
cellular organisms	root	All Organisms → cellular organisms	29.13 %
Viruses	superkingdom	All Organisms → Viruses	12.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.13 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	4.72 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
Saprospiria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
unclassified Pseudomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.79 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
Saprospirales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
Pseudomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.79 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
Saprospiraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
Pseudomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.79 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
unclassified Saprospiraceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
Pseudomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.79 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.27 %
Saprospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	14.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.09 %
Pseudomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	5.51 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	4.72 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.79 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000117\|DelMOWin2010_c10239138	Not Available	537	Open in IMG/M
3300000117\|DelMOWin2010_c10248399	Not Available	521	Open in IMG/M
3300000117\|DelMOWin2010_c10257424	Not Available	508	Open in IMG/M
3300001720\|JGI24513J20088_1003379	All Organisms → Viruses → Predicted Viral	2310	Open in IMG/M
3300005747\|Ga0076924_1000603	Not Available	531	Open in IMG/M
3300005912\|Ga0075109_1067170	Not Available	1290	Open in IMG/M
3300005939\|Ga0075123_10220754	Not Available	706	Open in IMG/M
3300006025\|Ga0075474_10229016	Not Available	563	Open in IMG/M
3300006027\|Ga0075462_10200301	Not Available	600	Open in IMG/M
3300006029\|Ga0075466_1047365	All Organisms → Viruses → environmental samples → uncultured virus	1279	Open in IMG/M
3300006029\|Ga0075466_1075096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	950	Open in IMG/M
3300006029\|Ga0075466_1165427	Not Available	562	Open in IMG/M
3300006735\|Ga0098038_1294599	Not Available	505	Open in IMG/M
3300006752\|Ga0098048_1103198	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	862	Open in IMG/M
3300006789\|Ga0098054_1096973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	1105	Open in IMG/M
3300006803\|Ga0075467_10253892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	953	Open in IMG/M
3300006868\|Ga0075481_10292801	Not Available	568	Open in IMG/M
3300006869\|Ga0075477_10366320	Not Available	564	Open in IMG/M
3300006916\|Ga0070750_10260945	Not Available	750	Open in IMG/M
3300006919\|Ga0070746_10328836	Not Available	697	Open in IMG/M
3300006919\|Ga0070746_10489446	Not Available	542	Open in IMG/M
3300006928\|Ga0098041_1233985	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	587	Open in IMG/M
3300006990\|Ga0098046_1101237	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300007276\|Ga0070747_1147515	Not Available	847	Open in IMG/M
3300007344\|Ga0070745_1340002	Not Available	528	Open in IMG/M
3300007539\|Ga0099849_1036771	Not Available	2077	Open in IMG/M
3300007555\|Ga0102817_1083822	Not Available	698	Open in IMG/M
3300007963\|Ga0110931_1121047	Not Available	787	Open in IMG/M
3300008012\|Ga0075480_10627728	Not Available	506	Open in IMG/M
3300009027\|Ga0102957_1370423	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	532	Open in IMG/M
3300009058\|Ga0102854_1054609	All Organisms → Viruses → Predicted Viral	1145	Open in IMG/M
3300009420\|Ga0114994_10336342	Not Available	1003	Open in IMG/M
3300009435\|Ga0115546_1157497	Not Available	799	Open in IMG/M
3300009442\|Ga0115563_1144489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	962	Open in IMG/M
3300009495\|Ga0115571_1401365	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	534	Open in IMG/M
3300009496\|Ga0115570_10387835	Not Available	594	Open in IMG/M
3300009497\|Ga0115569_10388998	Not Available	602	Open in IMG/M
3300009507\|Ga0115572_10223459	Not Available	1082	Open in IMG/M
3300009526\|Ga0115004_10906976	Not Available	526	Open in IMG/M
3300009593\|Ga0115011_11971007	Not Available	532	Open in IMG/M
3300010150\|Ga0098056_1205246	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300010430\|Ga0118733_101822698	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300010430\|Ga0118733_107521691	Not Available	565	Open in IMG/M
3300010883\|Ga0133547_11801374	Not Available	1132	Open in IMG/M
3300011118\|Ga0114922_10402076	Not Available	1136	Open in IMG/M
3300011254\|Ga0151675_1004111	Not Available	661	Open in IMG/M
3300017697\|Ga0180120_10154602	All Organisms → Viruses → environmental samples → uncultured virus	970	Open in IMG/M
3300017697\|Ga0180120_10327251	Not Available	610	Open in IMG/M
3300017697\|Ga0180120_10390445	Not Available	547	Open in IMG/M
3300017705\|Ga0181372_1089785	Not Available	523	Open in IMG/M
3300017706\|Ga0181377_1036528	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300017714\|Ga0181412_1115740	All Organisms → Viruses → environmental samples → uncultured virus	621	Open in IMG/M
3300017728\|Ga0181419_1171159	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	516	Open in IMG/M
3300017753\|Ga0181407_1180591	Not Available	515	Open in IMG/M
3300017767\|Ga0181406_1089268	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300017767\|Ga0181406_1169586	Not Available	653	Open in IMG/M
3300017949\|Ga0181584_10894524	Not Available	521	Open in IMG/M
3300017951\|Ga0181577_10783184	Not Available	575	Open in IMG/M
3300017962\|Ga0181581_10354621	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	931	Open in IMG/M
3300017967\|Ga0181590_10970888	Not Available	555	Open in IMG/M
3300017968\|Ga0181587_10794855	Not Available	591	Open in IMG/M
3300018416\|Ga0181553_10560903	Not Available	606	Open in IMG/M
3300018416\|Ga0181553_10614300	Not Available	573	Open in IMG/M
3300018421\|Ga0181592_10654159	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300018682\|Ga0188851_1010245	All Organisms → Viruses → Predicted Viral	1241	Open in IMG/M
3300019751\|Ga0194029_1068609	Not Available	600	Open in IMG/M
3300019765\|Ga0194024_1122764	Not Available	601	Open in IMG/M
3300019934\|Ga0194005_103424	Not Available	675	Open in IMG/M
3300020053\|Ga0181595_10097110	Not Available	1450	Open in IMG/M
3300020174\|Ga0181603_10385953	Not Available	516	Open in IMG/M
3300020810\|Ga0181598_1007835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	7869	Open in IMG/M
3300021373\|Ga0213865_10338529	Not Available	687	Open in IMG/M
3300021375\|Ga0213869_10387161	Not Available	575	Open in IMG/M
3300021425\|Ga0213866_10078436	All Organisms → Viruses → Predicted Viral	1826	Open in IMG/M
3300021957\|Ga0222717_10494709	Not Available	659	Open in IMG/M
3300021958\|Ga0222718_10474288	Not Available	610	Open in IMG/M
3300022065\|Ga0212024_1087505	Not Available	554	Open in IMG/M
3300022068\|Ga0212021_1103724	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	583	Open in IMG/M
3300022164\|Ga0212022_1037294	Not Available	751	Open in IMG/M
3300022164\|Ga0212022_1071219	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	534	Open in IMG/M
3300022183\|Ga0196891_1011932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	1708	Open in IMG/M
3300022187\|Ga0196899_1199964	Not Available	529	Open in IMG/M
3300022208\|Ga0224495_10395090	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	543	Open in IMG/M
3300022857\|Ga0222653_1005749	Not Available	3968	Open in IMG/M
3300022867\|Ga0222629_1015529	Not Available	1160	Open in IMG/M
3300022885\|Ga0222662_1025605	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300022887\|Ga0222642_1025941	All Organisms → Viruses → Predicted Viral	1238	Open in IMG/M
3300022925\|Ga0255773_10237853	Not Available	789	Open in IMG/M
3300022929\|Ga0255752_10335167	Not Available	624	Open in IMG/M
3300023116\|Ga0255751_10302865	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300023116\|Ga0255751_10589294	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	505	Open in IMG/M
3300023695\|Ga0228680_1010468	All Organisms → Viruses → Predicted Viral	1021	Open in IMG/M
(restricted) 3300024062\|Ga0255039_10545647	All Organisms → Viruses → environmental samples → uncultured virus	507	Open in IMG/M
3300024262\|Ga0210003_1199764	Not Available	820	Open in IMG/M
3300024262\|Ga0210003_1254955	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	691	Open in IMG/M
3300024346\|Ga0244775_11232593	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	582	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10445994	Not Available	626	Open in IMG/M
3300025086\|Ga0208157_1080005	Not Available	817	Open in IMG/M
3300025086\|Ga0208157_1127329	Not Available	584	Open in IMG/M
3300025108\|Ga0208793_1029505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	1838	Open in IMG/M
3300025110\|Ga0208158_1160171	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	508	Open in IMG/M
3300025120\|Ga0209535_1185414	Not Available	606	Open in IMG/M
3300025120\|Ga0209535_1195817	Not Available	575	Open in IMG/M
3300025132\|Ga0209232_1079404	All Organisms → Viruses → Predicted Viral	1139	Open in IMG/M
3300025305\|Ga0208684_1075532	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300025438\|Ga0208770_1065109	Not Available	679	Open in IMG/M
3300025666\|Ga0209601_1093031	All Organisms → Viruses → environmental samples → uncultured virus	905	Open in IMG/M
3300025668\|Ga0209251_1178974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	530	Open in IMG/M
3300025671\|Ga0208898_1152905	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	621	Open in IMG/M
3300025685\|Ga0209095_1216374	Not Available	522	Open in IMG/M
3300025687\|Ga0208019_1088678	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	972	Open in IMG/M
3300025690\|Ga0209505_1068282	All Organisms → Viruses → Predicted Viral	1087	Open in IMG/M
3300025698\|Ga0208771_1191246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	549	Open in IMG/M
3300025759\|Ga0208899_1256992	Not Available	515	Open in IMG/M
3300025806\|Ga0208545_1122121	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300025853\|Ga0208645_1266009	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	560	Open in IMG/M
(restricted) 3300027856\|Ga0255054_10556954	All Organisms → Viruses → environmental samples → uncultured virus	555	Open in IMG/M
3300028125\|Ga0256368_1024589	All Organisms → Viruses → Predicted Viral	1070	Open in IMG/M
3300028125\|Ga0256368_1045716	Not Available	775	Open in IMG/M
3300028290\|Ga0247572_1191869	Not Available	514	Open in IMG/M
3300028297\|Ga0228617_1122913	Not Available	607	Open in IMG/M
3300028600\|Ga0265303_11677126	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	532	Open in IMG/M
3300031578\|Ga0307376_10652570	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	664	Open in IMG/M
3300031669\|Ga0307375_10439966	Not Available	799	Open in IMG/M
3300032254\|Ga0316208_1059392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → unclassified Pseudomonadales → Pseudomonadales bacterium	1095	Open in IMG/M
3300032255\|Ga0316209_1151224	Not Available	569	Open in IMG/M
3300033742\|Ga0314858_037853	Not Available	1138	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.43%
Terrestrial	Environmental → Terrestrial	1.57%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	88.19%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	7.09%
Freshwater	Environmental → Aquatic → Freshwater	3.15%
Soil	Environmental → Terrestrial → Soil	1.57%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	33.86%
Oceanic	Environmental → Aquatic → Marine → Oceanic	19.68%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	14.17%
Pelagic	Environmental → Aquatic → Marine → Pelagic	7.09%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	7.09%
Strait	Environmental → Aquatic → Marine → Strait	4.72%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.15%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.36%
River	Environmental → Aquatic → Freshwater → River	1.57%
Inlet	Environmental → Aquatic → Marine → Inlet	1.57%
Clay	Environmental → Terrestrial → Soil → Clay	1.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.79%
Sediment	Environmental → Aquatic → Marine → Sediment	0.79%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	30.71%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	17.32%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	11.81%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	7.09%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	7.09%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	4.72%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	3.15%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.15%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	2.36%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.57%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.57%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.79%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	0.79%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	20.47%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	16.54%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	11.81%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	7.09%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	4.72%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	4.72%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	3.15%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	3.15%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.36%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.36%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	2.36%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.36%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.57%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.57%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.57%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	1.57%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.57%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.57%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.79%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.79%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.79%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.79%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.79%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.79%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.79%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.79%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	0.79%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001720	Marine viral communities from the Pacific Ocean - LP-36	Environmental	Open in IMG/M
3300005747	Seawater microbial communities from Vineyard Sound, MA, USA - control T14	Environmental	Open in IMG/M
3300005912	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD	Environmental	Open in IMG/M
3300005939	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300006928	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG	Environmental	Open in IMG/M
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009496	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524	Environmental	Open in IMG/M
3300009497	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300011254	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017705	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG	Environmental	Open in IMG/M
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental	Open in IMG/M
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental	Open in IMG/M
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental	Open in IMG/M
3300017753	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018416	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018682	Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1	Environmental	Open in IMG/M
3300019751	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300019934	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_1-2_MG	Environmental	Open in IMG/M
3300020053	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)	Environmental	Open in IMG/M
3300020174	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)	Environmental	Open in IMG/M
3300020810	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300021375	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132	Environmental	Open in IMG/M
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300022065	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)	Environmental	Open in IMG/M
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental	Open in IMG/M
3300022164	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)	Environmental	Open in IMG/M
3300022183	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022208	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022857	Saline water microbial communities from Ace Lake, Antarctica - #419	Environmental	Open in IMG/M
3300022867	Saline water microbial communities from Ace Lake, Antarctica - #1	Environmental	Open in IMG/M
3300022885	Saline water microbial communities from Ace Lake, Antarctica - #600	Environmental	Open in IMG/M
3300022887	Saline water microbial communities from Ace Lake, Antarctica - #229	Environmental	Open in IMG/M
3300022925	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG	Environmental	Open in IMG/M
3300022929	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023695	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 21R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024062 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1	Environmental	Open in IMG/M
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental	Open in IMG/M
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025110	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025305	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)	Environmental	Open in IMG/M
3300025438	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9 (SPAdes)	Environmental	Open in IMG/M
3300025666	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)	Environmental	Open in IMG/M
3300025668	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025685	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025690	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)	Environmental	Open in IMG/M
3300025698	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKX (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025806	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025853	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)	Environmental	Open in IMG/M
3300027856 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23	Environmental	Open in IMG/M
3300028125	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB	Environmental	Open in IMG/M
3300028290	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 25R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028297	Seawater microbial communities from Monterey Bay, California, United States - 18D	Environmental	Open in IMG/M
3300028600	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300032254	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite	Environmental	Open in IMG/M
3300032255	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month chalcopyrite	Environmental	Open in IMG/M
3300033742	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_102391381	3300000117	Marine	MREELINWIKSCDKFHMLELYSEMRRMKRSWNAE*
DelMOWin2010_102483992	3300000117	Marine	KNKAKAYEEQKSMRQELIDWVNSCNTMHMQELHSEMRRMKRSWNAK*
DelMOWin2010_102574241	3300000117	Marine	KEMREELINWIKSCDKFHMLELYSEMRRMKRSWNDDE*
JGI24513J20088_10033795	3300001720	Marine	EQKSMRKELIDFINKCSKFNMQELHSEMRRMKRS*
Ga0076924_10006031	3300005747	Marine	EEQKAMRQELIEWVKSCDQWHMGELFSEMRRMKRSWDGEK*
Ga0075109_10671705	3300005912	Saline Lake	AKAHEEQKAMRQELIEWVKTCDQWHMGELHSEMRRMKRSWDGEK*
Ga0075123_102207543	3300005939	Saline Lake	KAKAYEEQKAMRQELTDWIKSCDKFHMQELWSEMRRMKRGWEDKE*
Ga0075474_102290162	3300006025	Aqueous	QKSMRQELVRWIESCDTRHMHELYSEMKRMKKEWE*
Ga0075462_102003013	3300006027	Aqueous	AYEEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNA*
Ga0075466_10473651	3300006029	Aqueous	AYEEQKSMRQELIDWVNSCNTMHMQELHSEMRRMKRSWND*
Ga0075466_10750961	3300006029	Aqueous	AYEEQKSMRQELIDWVNSCNTMHMQELHSEMRRMKRSWNAK*
Ga0075466_11654271	3300006029	Aqueous	EEQKEMREELINWIKSCDKFHMLELYSEMRRMKRSWNAE*
Ga0098038_12945991	3300006735	Marine	KAKAYEEQKSMRQELIDWVNSCSAMHMQELHSEMRRMKRSWNAK*
Ga0098048_11031981	3300006752	Marine	QKSMRKELVDWIDSCSQQHMQELYSEMKRMKRSWNE*
Ga0098054_10969731	3300006789	Marine	NKAKAYEEQKSMRQELVDWVNSCNTMHMQELHSEMRRMKRSWNAK*
Ga0075467_102538923	3300006803	Aqueous	KAYEEQKSMRQELIDWVNSCNTMHMQELHSEMRRMKRSWNAK*
Ga0075481_102928011	3300006868	Aqueous	EEQKEMRQELINWINSCDKFQMLELYSEMRRMKRSAI*
Ga0075477_103663201	3300006869	Aqueous	NRAKAYEEQKSMRQELVRWIESCDTRHMHELYSEMKRMKKEWE*
Ga0070750_102609451	3300006916	Aqueous	KEMRAELMEWVKTCDKFHMGELYSEMKRMKRSWNE*
Ga0070746_103288361	3300006919	Aqueous	EMRAELMEWVKTCDKFHMGELYSEMKRMKRSWNE*
Ga0070746_104894461	3300006919	Aqueous	VQDNNKAKAYEEQKAMRQELIEWVKSCDQWHMGELFSEMRRMKRSWDGEK*
Ga0098041_12339851	3300006928	Marine	KSMRKELVDWIDSCSQQHMQELYSEMKRMKRSWNE*
Ga0098046_11012371	3300006990	Marine	KNKAKAYEEQKSMRQELIDWVNSCSAMHMQELHSEMRRMKRSWNAK*
Ga0070747_11475151	3300007276	Aqueous	EEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNA*
Ga0070745_13400021	3300007344	Aqueous	KAKAHEEQKAMREELINWIKSCDKLQMGELYSEMRRMKRGWE*
Ga0099849_10367711	3300007539	Aqueous	AMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNAK*
Ga0102817_10838221	3300007555	Estuarine	AKIHEEQKEMRAELIEWVKTCDKLHMGELYSEMRRMKRSWND*
Ga0110931_11210471	3300007963	Marine	SMRKELIDWIDSCSQQHMQELYSEMRRMKRSWNE*
Ga0075480_106277281	3300008012	Aqueous	EQKEMREELLRWIKSCDKFQMLELYSEMRRMKRSAI*
Ga0102957_13704231	3300009027	Pond Water	RAKAYEEQKSMRQELVRWIESCDTRHMHELYSEMKRMKKEWE*
Ga0102854_10546091	3300009058	Estuarine	KAYEEQKSMRQELIDWVKSCNTMHMQELHSEMTRMKRSWNNAK*
Ga0114994_103363421	3300009420	Marine	NKAKAYEEQKAMRQELIEWVKTCDQWHMGELFSEMRRMKRSWDGEK*
Ga0115546_11574971	3300009435	Pelagic Marine	AYEEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWND*
Ga0115563_11444891	3300009442	Pelagic Marine	KNKAKAYEEQKSMRQELIDWVKSCNTMHMQELHSEMRRMKRSWNAK*
Ga0115571_14013652	3300009495	Pelagic Marine	HEEQKAMREELIEWVKTCDKLHMGELFSEMRRMKRSWE*
Ga0115570_103878351	3300009496	Pelagic Marine	KAMRQELTDWIKSCDQWHMQELWSEMRRMKRGWEDQE*
Ga0115569_103889981	3300009497	Pelagic Marine	QKEMREELINWVKSCDKFHMLELYSEMRRMKRSWNAE*
Ga0115572_102234591	3300009507	Pelagic Marine	AMRQELIDWVKSCDKLQMGELYSEMRRMKRSWND*
Ga0115004_109069761	3300009526	Marine	KAMRQELNDWIKSCDQWHMQELWSEMRRMKRGWEDKE*
Ga0115011_119710072	3300009593	Marine	SMRQELIDWINSCSTMHMQELHSEMRRMKGSWNAK*
Ga0098056_12052461	3300010150	Marine	NKAKAYEEQKSMRQELIDWVNSCSAMHMQELHSEMRRMKRSWNAK*
Ga0118733_1018226984	3300010430	Marine Sediment	YEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWNAE*
Ga0118733_1075216911	3300010430	Marine Sediment	KAKAYEEQKAMRQELIEWVKSCDQWHMGELFSEMRRMKRTWDGEK*
Ga0133547_118013743	3300010883	Marine	ETIDSNKAKAYEEQKAMRQELTDWIKSCDKWHMQELWSHMRRMKRGWEIE*
Ga0114922_104020761	3300011118	Deep Subsurface	AYEEQKAMRQELTDWIKSCDQWHMQELWSEMRRMKRGWEDKE*
Ga0151675_10041112	3300011254	Marine	KSHQDQKEMREELMEWVKTCDKFHMGELYSEMKRMKRSWNE*
Ga0180120_101546021	3300017697	Freshwater To Marine Saline Gradient	KAYEEQKSMRQELIDWVNSCNTMHMQELHSEMRRMKRSWND
Ga0180120_103272511	3300017697	Freshwater To Marine Saline Gradient	KAYEEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNA
Ga0180120_103904451	3300017697	Freshwater To Marine Saline Gradient	KSYEDQKEMRAELIEWVKTCDKFHMGELYSEMKRMKRSWDE
Ga0181372_10897851	3300017705	Marine	KNKAKAYEEQKSMRQELIDWVNSCSAMHMQELHSEMRRMKRSWNAK
Ga0181377_10365281	3300017706	Marine	AHEEQKSMRQELIDWINSCNTMHMQELHSEMRRMKRSWNAK
Ga0181412_11157401	3300017714	Seawater	HEQQKEMRQELIEWVKTCDKLQMGELYSEMKRMKRSWNE
Ga0181419_11711591	3300017728	Seawater	EQKSMRKELIDWIDSCSQQHMQELYSEMKRMKRSWNE
Ga0181407_11805911	3300017753	Seawater	KSMRQELIDWVNSCSAMHMQELHSEMRRMKRSWND
Ga0181406_10892681	3300017767	Seawater	KPLRGELMDWVKRCSAMHMQGLHSEMGRMKGSWNAK
Ga0181406_11695861	3300017767	Seawater	EQKEMREELINWIKSCDKFQMSELYSEMRRMKRSAL
Ga0181584_108945243	3300017949	Salt Marsh	YEEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWND
Ga0181577_107831841	3300017951	Salt Marsh	KAHEEQKAMREELINWIKSCDKLQMGELYSEMRRMKRSWND
Ga0181581_103546214	3300017962	Salt Marsh	YEEQKSMRQELVRWIESCDVRHMHELYSEMKRMKKEWE
Ga0181590_109708882	3300017967	Salt Marsh	EQKAMRQELIDWIKSCDKLQMGELYSEMRRMKRSWND
Ga0181587_107948553	3300017968	Salt Marsh	EEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNAE
Ga0181553_105609031	3300018416	Salt Marsh	EEQKAMRQELIDWIKSCDKLQMGELYSEMRRMKRSWND
Ga0181553_106143001	3300018416	Salt Marsh	AMREELINWIKSCDKLQMGELYSEMRRMKRSWNAK
Ga0181592_106541593	3300018421	Salt Marsh	AKAYEEQKFMRQELIDWINSCSAMHMQELHSEMRRMKRSWND
Ga0188851_10102451	3300018682	Freshwater Lake	QKSMRQELVRWIESCETRHMHELYSEMKRMKKEWE
Ga0194029_10686091	3300019751	Freshwater	AYEEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNA
Ga0194024_11227641	3300019765	Freshwater	QKEMRQELIDWVKSCDKLQMGELYSEMRRMKRSWND
Ga0194005_1034241	3300019934	Sediment	NKAKAYEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWNAE
Ga0181595_100971104	3300020053	Salt Marsh	AKAYEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWNAK
Ga0181603_103859531	3300020174	Salt Marsh	HEEQKAMREELINWIKSCDKLQMGELYSEMRRMKRSWNAE
Ga0181598_10078357	3300020810	Salt Marsh	QKAMREELINWIKSCDKLQMGELYSEMRRMKRSWNAE
Ga0213865_103385293	3300021373	Seawater	EEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWND
Ga0213869_103871613	3300021375	Seawater	AKAYEEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWND
Ga0213866_100784364	3300021425	Seawater	EQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWNAK
Ga0222717_104947093	3300021957	Estuarine Water	EEQKEMREELINWIKSCDKFHMLELYSEMRRMKRSWND
Ga0222718_104742883	3300021958	Estuarine Water	KAMREELINWIKSCDKLQMGELYSEMRRMKRSWND
Ga0212024_10875051	3300022065	Aqueous	KAKAYEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWND
Ga0212021_11037242	3300022068	Aqueous	YEEQKSMRQELVRWIESCDTRHMHELYSEMKRMKKEWE
Ga0212022_10372941	3300022164	Aqueous	KAKAYEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWNAE
Ga0212022_10712191	3300022164	Aqueous	EQQKEMRQELIEWVKTCDKLQMGELYSEMKRMKRSWNE
Ga0196891_10119321	3300022183	Aqueous	NRAKAYEEQKSMRQELVRWIESCDTRHMHELYSEMKRMKKEWE
Ga0196899_11999641	3300022187	Aqueous	AKAYEEQKAMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNAE
Ga0224495_103950902	3300022208	Sediment	IDSNKAKAHEEQKAMREELIEWVKTCDKLHMGELFSEMRRMKRSWE
Ga0222653_10057491	3300022857	Saline Water	KAKAHEEQKAMRQELIEWVKTCDQWHMGELHSEMRRMKRSWDGEK
Ga0222629_10155294	3300022867	Saline Water	NNKAKAYEEQKAMRQELIEWVKTCDQWHMGELHSEMRRMKRSWDGEK
Ga0222662_10256055	3300022885	Saline Water	SNKAKAHEEQKAMRQELIEWVKTCDQWHMGELHSEMRRMKRSWDGEK
Ga0222642_10259411	3300022887	Saline Water	YEEQKQMREELIEWIKTCDKLHMGELFSEMRRMKRSWE
Ga0255773_102378531	3300022925	Salt Marsh	KAYEEQKAMRQELIDWIKSCDKLQMGELYSEMRRMKRSWND
Ga0255752_103351673	3300022929	Salt Marsh	AMRQELIDWVKSCDKLQMGELYSEMRRMKRSWNAE
Ga0255751_103028653	3300023116	Salt Marsh	EEQKAMREELINWIKSCDKLQMGELYSEMRRMKRSWND
Ga0255751_105892941	3300023116	Salt Marsh	KVYEEQKSMRQELVRWIESCEVRHMHELYSEMKRMKKEWE
Ga0228680_10104681	3300023695	Seawater	EEQKEMRQELINWINSCDKFQMLELYSEMRRMKRSWK
(restricted) Ga0255039_105456471	3300024062	Seawater	EQKAMRQELIDWIKSCDQWHMQELWSEMRRMKRGWEDQE
Ga0210003_11997643	3300024262	Deep Subsurface	MRQELTDWIKSCDKFHMQELWSEMRRMKRGWEDKE
Ga0210003_12549551	3300024262	Deep Subsurface	QKSMRQELVRWIESCDTRHMHELYSEMKRMKKEWE
Ga0244775_112325931	3300024346	Estuarine	KAHEEQKAMREELIEWVKTCDKLHMGELFSEMRRMKRSWE
(restricted) Ga0255048_104459941	3300024518	Seawater	MRQELIDWIKSCDQWHMQELWSEMRRMKRGWEDQE
Ga0208157_10800054	3300025086	Marine	EQKAMRQELIDWVKSCDKLQMGELYSEMKRMKRGWE
Ga0208157_11273293	3300025086	Marine	EQKSMRKELIDFINNCSRFNMQELHSEMRRMKRSK
Ga0208793_10295055	3300025108	Marine	AHEEQKAMRQELIDWVKSCDKLQMGELYSEMKRMKRGWE
Ga0208158_11601711	3300025110	Marine	KSMRKELVDWIDSCSQQHMQELYSEMKRMKRSWNE
Ga0209535_11854143	3300025120	Marine	KAYEEQKSMRQELIDWVNSCNTMHMQELHSEMTRMKRSWNAK
Ga0209535_11958173	3300025120	Marine	MRQELIDWVKSCNTMHMQELHSEMTRMKRSWNNAK
Ga0209232_10794044	3300025132	Marine	SKNKAKAYEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWND
Ga0208684_10755323	3300025305	Deep Ocean	NKAKAYEEQKSMRQELIDWVKSCNTMHMQELHSEMTRMKRSWNAK
Ga0208770_10651093	3300025438	Saline Lake	EEQKAMRQELIEWVKTCDQWHMGELHSEMRRMKRSWDGEK
Ga0209601_10930311	3300025666	Pelagic Marine	DSAPLIDWIKSCDQWHMQELWSEMRRMKRGWEDQE
Ga0209251_11789741	3300025668	Marine	QKAMREELIEWVKTCDKLHMGELFSEMRRMKRSWE
Ga0208898_11529051	3300025671	Aqueous	EEQKAMRQELIRWIESCDKRHMQELYSEMKRMKRGWEQ
Ga0209095_12163741	3300025685	Pelagic Marine	NKAKAYEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWNAK
Ga0208019_10886781	3300025687	Aqueous	AKIHEEQKEMRAELIEWVKTCDKLHMGELYSEMRRMKRSWND
Ga0209505_10682824	3300025690	Pelagic Marine	ETIDSNKAKAYEEQKAMREELIEWVKTCDKLHMGELFSEMRRMKRSWE
Ga0208771_11912461	3300025698	Saline Lake	YEEQKQMREELIEWVKTCDKLHMGELFSEMRRMKRSWE
Ga0208899_12569922	3300025759	Aqueous	KAKAHEEQKAMREELINWIKSCDKLQMGELYSEMRRMKRSWNAE
Ga0208545_11221211	3300025806	Aqueous	SKNKAKAYEEQKSMRQELIDWVNSCNTMHMQELHSEMTRMKRSWNAK
Ga0208645_12660091	3300025853	Aqueous	RAKAYEEQKSMRQELVRWIESCEVRHMHELYSEMKRMKKEWE
(restricted) Ga0255054_105569541	3300027856	Seawater	EQKAMRQELTDWIKSCDQWHMQELWSEMRRMKRGWEDQE
Ga0256368_10245891	3300028125	Sea-Ice Brine	TIDNNKAKAHEEQKAMREELIEWVKTCDKLHMGELFSEMRRMKRSWE
Ga0256368_10457163	3300028125	Sea-Ice Brine	NKAKAYEEQKAMRQELTDWIKSCDQWHMQELWSEMRRMKRGWEDQE
Ga0247572_11918691	3300028290	Seawater	AYEEQKEMRQELIKWIKSCDKFQMLELYSERRRMKRSAI
Ga0228617_11229133	3300028297	Seawater	YEEQKEMRQELIKWINSCDKFQMLELYSEMRRMKRSAI
Ga0265303_116771262	3300028600	Sediment	KEMRQELIEWVKTCDKLQMGELYSEMKRMKRSWNE
Ga0307376_106525703	3300031578	Soil	SNKAKAYEEQKAMREELIEWVKTCDKLHMGELFSEMRRMKRSWE
Ga0307375_104399661	3300031669	Soil	AMRQELTDWIKSCDKFHMQELWSEMRRMKRGWEDKE
Ga0316208_10593923	3300032254	Microbial Mat	KAYEEQKSMRQELIDWVNSCNTMHMQELHSEMRRMKRSWNAK
Ga0316209_11512242	3300032255	Microbial Mat	NKAKAYEEQKSMRQELIDWVNSCNTMHMQELHSEMRRMKRSWNAK
Ga0314858_037853_1000_1137	3300033742	Sea-Ice Brine	GNKAKIHEEQKEMRAELIEWVKTCDKLHMGELYSEMRRMKRSWND

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters