Metagenome Family F065663

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065663
Family Type	Metagenome
Number of Sequences	127
Average Sequence Length	45 residues
Representative Sequence	MSIPKQQTPPIEERIGSMVGKIIVLALCAMLLWGYSTTFLAQIGLF
Number of Associated Samples	90
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	34.65 %
% of genes near scaffold ends (potentially truncated)	34.65 %
% of genes from short scaffolds (< 2000 bps)	81.10 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.142 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.559 % of family members)
Environment Ontology (ENVO)	Unclassified (44.094 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.630 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.59% β-sheet: 0.00% Coil/Unstructured: 55.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00210	Ferritin	21.26
PF00132	Hexapep	7.09
PF08666	SAF	6.30
PF06035	Peptidase_C93	5.51
PF13545	HTH_Crp_2	3.15
PF04290	DctQ	3.15
PF06808	DctM	2.36
PF00325	Crp	2.36
PF11324	DUF3126	1.57
PF07885	Ion_trans_2	1.57
PF08734	GYD	1.57
PF13356	Arm-DNA-bind_3	0.79
PF13340	DUF4096	0.79
PF04392	ABC_sub_bind	0.79
PF01494	FAD_binding_3	0.79
PF01145	Band_7	0.79
PF01694	Rhomboid	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	5.51
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.57
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.57
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.79
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.79
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.79
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.14 %
Unclassified	root	N/A	33.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.14 %
Unclassified	root	N/A	33.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.14 %
Unclassified	root	N/A	33.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.52 %
Unclassified	root	N/A	33.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.43 %
Unclassified	root	N/A	33.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.15 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	22.05 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.79 %
Erwiniaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	18.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.79 %
Pantoea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
Pantoea ananatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea → Pantoea ananatis	0.79 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.79 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.15 %
Bradyrhizobium sp. BTAi1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1	0.79 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.79 %
Pantoea ananatis AJ13355	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea → Pantoea ananatis → Pantoea ananatis AJ13355	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_103878544	Not Available	562	Open in IMG/M
3300004152\|Ga0062386_100094159	Not Available	2297	Open in IMG/M
3300004479\|Ga0062595_100831431	Not Available	766	Open in IMG/M
3300004633\|Ga0066395_10014052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3038	Open in IMG/M
3300004633\|Ga0066395_10306672	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300004633\|Ga0066395_10337643	Not Available	834	Open in IMG/M
3300005179\|Ga0066684_10133469	Not Available	1560	Open in IMG/M
3300005187\|Ga0066675_10051590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2535	Open in IMG/M
3300005332\|Ga0066388_100069454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3817	Open in IMG/M
3300005332\|Ga0066388_100326229	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300005332\|Ga0066388_101303295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1252	Open in IMG/M
3300005332\|Ga0066388_102518670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	935	Open in IMG/M
3300005332\|Ga0066388_103893429	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005332\|Ga0066388_108172073	Not Available	522	Open in IMG/M
3300005436\|Ga0070713_100070670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2947	Open in IMG/M
3300005436\|Ga0070713_101205212	Not Available	733	Open in IMG/M
3300005437\|Ga0070710_11305422	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300005764\|Ga0066903_100117282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3682	Open in IMG/M
3300005764\|Ga0066903_100505994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2049	Open in IMG/M
3300005764\|Ga0066903_102967718	Not Available	919	Open in IMG/M
3300005764\|Ga0066903_106000929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	636	Open in IMG/M
3300005764\|Ga0066903_107098077	Not Available	580	Open in IMG/M
3300005764\|Ga0066903_107848937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	548	Open in IMG/M
3300005764\|Ga0066903_108073373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300006755\|Ga0079222_10004663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4464	Open in IMG/M
3300006755\|Ga0079222_10677811	All Organisms → cellular organisms → Bacteria → Proteobacteria	809	Open in IMG/M
3300006804\|Ga0079221_10268572	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300006804\|Ga0079221_11156401	Not Available	597	Open in IMG/M
3300006806\|Ga0079220_10080300	Not Available	1635	Open in IMG/M
3300006806\|Ga0079220_10088899	Not Available	1572	Open in IMG/M
3300006854\|Ga0075425_100853353	Not Available	1042	Open in IMG/M
3300006903\|Ga0075426_10691089	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300006954\|Ga0079219_10451350	Not Available	877	Open in IMG/M
3300010048\|Ga0126373_11434344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	756	Open in IMG/M
3300010048\|Ga0126373_12180022	Not Available	615	Open in IMG/M
3300010358\|Ga0126370_10046230	All Organisms → cellular organisms → Bacteria	2737	Open in IMG/M
3300010358\|Ga0126370_10132822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Erwiniaceae → Pantoea → Pantoea ananatis → Pantoea ananatis AJ13355	1785	Open in IMG/M
3300010359\|Ga0126376_10233373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1552	Open in IMG/M
3300010360\|Ga0126372_13176356	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300010361\|Ga0126378_10660165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1159	Open in IMG/M
3300010361\|Ga0126378_11735016	Not Available	710	Open in IMG/M
3300010361\|Ga0126378_11789048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	699	Open in IMG/M
3300010366\|Ga0126379_12283232	Not Available	641	Open in IMG/M
3300010366\|Ga0126379_12311840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300010863\|Ga0124850_1081190	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300012971\|Ga0126369_10687175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1100	Open in IMG/M
3300012975\|Ga0134110_10504941	Not Available	550	Open in IMG/M
3300015371\|Ga0132258_10971920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2145	Open in IMG/M
3300016270\|Ga0182036_10421923	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300016294\|Ga0182041_11201500	Not Available	691	Open in IMG/M
3300016319\|Ga0182033_11061841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	722	Open in IMG/M
3300016319\|Ga0182033_11290198	Not Available	656	Open in IMG/M
3300016341\|Ga0182035_11354379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	638	Open in IMG/M
3300016341\|Ga0182035_11946765	Not Available	534	Open in IMG/M
3300016357\|Ga0182032_10117335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1913	Open in IMG/M
3300016357\|Ga0182032_11671289	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300016387\|Ga0182040_11610357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	553	Open in IMG/M
3300016404\|Ga0182037_10081007	All Organisms → cellular organisms → Bacteria → Proteobacteria	2280	Open in IMG/M
3300016422\|Ga0182039_10011274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5198	Open in IMG/M
3300016445\|Ga0182038_11583385	Not Available	589	Open in IMG/M
3300017822\|Ga0187802_10000009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	37198	Open in IMG/M
3300017926\|Ga0187807_1048363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1318	Open in IMG/M
3300017930\|Ga0187825_10228890	Not Available	676	Open in IMG/M
3300017932\|Ga0187814_10008828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3964	Open in IMG/M
3300017994\|Ga0187822_10304786	Not Available	563	Open in IMG/M
3300018060\|Ga0187765_10219429	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300021560\|Ga0126371_10077898	All Organisms → cellular organisms → Bacteria → Proteobacteria	3245	Open in IMG/M
3300021560\|Ga0126371_10227959	All Organisms → cellular organisms → Bacteria → Proteobacteria	1970	Open in IMG/M
3300021560\|Ga0126371_10993482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BTAi1	981	Open in IMG/M
3300021560\|Ga0126371_11159435	Not Available	910	Open in IMG/M
3300021560\|Ga0126371_12005063	Not Available	696	Open in IMG/M
3300021560\|Ga0126371_12487293	Not Available	627	Open in IMG/M
3300021560\|Ga0126371_13031894	Not Available	569	Open in IMG/M
3300025928\|Ga0207700_10333985	Not Available	1316	Open in IMG/M
3300026308\|Ga0209265_1194792	Not Available	542	Open in IMG/M
3300026330\|Ga0209473_1229504	Not Available	666	Open in IMG/M
3300027050\|Ga0209325_1047955	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300027070\|Ga0208365_1004718	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300027787\|Ga0209074_10201045	Not Available	748	Open in IMG/M
3300027874\|Ga0209465_10006573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5100	Open in IMG/M
3300031543\|Ga0318516_10038534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2558	Open in IMG/M
3300031545\|Ga0318541_10164450	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300031545\|Ga0318541_10714063	Not Available	560	Open in IMG/M
3300031546\|Ga0318538_10031738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2467	Open in IMG/M
3300031546\|Ga0318538_10373529	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300031564\|Ga0318573_10034169	All Organisms → cellular organisms → Bacteria → Proteobacteria	2399	Open in IMG/M
3300031572\|Ga0318515_10484660	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031679\|Ga0318561_10516980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300031680\|Ga0318574_10268156	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300031718\|Ga0307474_10218086	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300031719\|Ga0306917_10703272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	794	Open in IMG/M
3300031724\|Ga0318500_10322161	Not Available	760	Open in IMG/M
3300031747\|Ga0318502_10276762	Not Available	984	Open in IMG/M
3300031748\|Ga0318492_10643984	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300031754\|Ga0307475_10099353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2269	Open in IMG/M
3300031770\|Ga0318521_10023821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2902	Open in IMG/M
3300031771\|Ga0318546_10467992	Not Available	883	Open in IMG/M
3300031779\|Ga0318566_10254748	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300031781\|Ga0318547_10382596	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300031782\|Ga0318552_10382562	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300031782\|Ga0318552_10505982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	617	Open in IMG/M
3300031792\|Ga0318529_10169395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1009	Open in IMG/M
3300031793\|Ga0318548_10272267	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300031797\|Ga0318550_10056811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1772	Open in IMG/M
3300031805\|Ga0318497_10717030	Not Available	561	Open in IMG/M
3300031823\|Ga0307478_10740641	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300031845\|Ga0318511_10222834	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300031859\|Ga0318527_10486886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	526	Open in IMG/M
3300031879\|Ga0306919_10568796	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300031890\|Ga0306925_10678183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1081	Open in IMG/M
3300031890\|Ga0306925_11639983	Not Available	623	Open in IMG/M
3300031910\|Ga0306923_10095345	All Organisms → cellular organisms → Bacteria → Proteobacteria	3352	Open in IMG/M
3300031912\|Ga0306921_11498117	Not Available	737	Open in IMG/M
3300031941\|Ga0310912_10080051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2371	Open in IMG/M
3300031942\|Ga0310916_11041003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	682	Open in IMG/M
3300031942\|Ga0310916_11553657	Not Available	538	Open in IMG/M
3300031946\|Ga0310910_10816308	Not Available	734	Open in IMG/M
3300032001\|Ga0306922_10254591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1887	Open in IMG/M
3300032001\|Ga0306922_10291706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1752	Open in IMG/M
3300032025\|Ga0318507_10172498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300032051\|Ga0318532_10277666	Not Available	595	Open in IMG/M
3300032054\|Ga0318570_10126408	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300032063\|Ga0318504_10181910	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300032064\|Ga0318510_10136979	Not Available	958	Open in IMG/M
3300032089\|Ga0318525_10196971	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300032094\|Ga0318540_10611796	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300032261\|Ga0306920_103763586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.64%
Host-Associated	Host-Associated	2.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.13%
Aquatic	Environmental → Aquatic	5.51%
Plants	Host-Associated → Plants	2.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.13%
Freshwater	Environmental → Aquatic → Freshwater	5.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.44%
Loam	Environmental → Terrestrial → Soil → Loam	18.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.46%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.15%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	6.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1038785442	3300004092	Bog Forest Soil	MANFVHNSQMSIPEQQVPPIEERIGSMAGKIIVLALCALLLWGYSTTFLAQIGLF*
Ga0062386_1000941591	3300004152	Bog Forest Soil	MSIPEQQVLSIEERIGSMVGKIIVLALCALLLWGYSTTFLAQIGLF*
Ga0062595_1008314312	3300004479	Soil	MSIAEQQTPTSEERIGSMVGKSVVLALCAFLLWGYSTTFLAQVGLF*
Ga0066395_100140523	3300004633	Tropical Forest Soil	MANEQQRQPIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLL*
Ga0066395_103066722	3300004633	Tropical Forest Soil	MSLPEQQTPPIEERIGSMVGKIIVLALCAMLLWGYSTTFLAQIGLM*
Ga0066395_103376431	3300004633	Tropical Forest Soil	MSIPVQQTSSAEDRIGAAIGKIIVLALLAFLLWGYSTTFLAQVGLF*
Ga0066684_101334692	3300005179	Soil	MSVPEQQTPPSEERIGGAVGKIITLALLAFLLWGYSTTFMAQVGLF*
Ga0066675_100515901	3300005187	Soil	SVPEQQTPPSEERIGGAVGKIITLALLAFLLWGYSTTFMAQVGLF*
Ga0066388_1000694546	3300005332	Tropical Forest Soil	MADEQQDQPIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLF*
Ga0066388_1003262293	3300005332	Tropical Forest Soil	MSLPEQQTPPIEERIGGMVGKIIVLALCAMLLWGYSTTFLAQIGLM*
Ga0066388_1013032952	3300005332	Tropical Forest Soil	MANEQQDQPIEERIGSMVGKIIVLAICALLLWGYSTTFLAQVGLF*
Ga0066388_1025186702	3300005332	Tropical Forest Soil	MANEEQYKPIEERIGGMVGKIIVLAICAMLLWGYSTTFHAQVGLF*
Ga0066388_1038934292	3300005332	Tropical Forest Soil	MSISEQQVPPIEERVGSMVGKIVLAFCAMLLWGYSTTFLAQIGLI*
Ga0066388_1081720732	3300005332	Tropical Forest Soil	MSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGL
Ga0070713_1000706703	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VHNSPMSIPKQQTPPIEERIGSMVGKIIVLTLCAMLLWGYSTTFLAQIGLF*
Ga0070713_1012052122	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VHNSSMSIAEQQTPTSEERIGSMVGKFAVLALCAFLLWGYTTTFLAQVGLF*
Ga0070710_113054221	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VSVPEQQTPPVEERVGSMLGKIIVLALCAMLLWGYSTTFLGQIRLF*
Ga0066903_1001172823	3300005764	Tropical Forest Soil	MANEQQDQPIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLF*
Ga0066903_1005059942	3300005764	Tropical Forest Soil	MANEQQHQAIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLF*
Ga0066903_1029677181	3300005764	Tropical Forest Soil	MADEQQDQPIEERIGSMVGKIIVLAICAMLLWGYSTTFLA
Ga0066903_1060009291	3300005764	Tropical Forest Soil	QSIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLL*
Ga0066903_1070980771	3300005764	Tropical Forest Soil	MHNSPMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI*
Ga0066903_1078489371	3300005764	Tropical Forest Soil	QQAQSIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLL*
Ga0066903_1080733732	3300005764	Tropical Forest Soil	MSGDGAETMANEEQYQPIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLF*
Ga0079222_100046632	3300006755	Agricultural Soil	MSIPKRQTPPIEERIGSMVGKIIVLTLCAMLLWGYSTTFLAQIGLF*
Ga0079222_106778112	3300006755	Agricultural Soil	MSSPEQETPEIEERIGSAVGKIMVLALCAFLLWGYSTSFLAQLGLF*
Ga0079221_102685722	3300006804	Agricultural Soil	MSSPEQETLEIEERIGSAVGKIMVLALCAFLLWGYSTSFLAQLGLF*
Ga0079221_111564012	3300006804	Agricultural Soil	MSIAEQNSLPIEDRIGSMAGKVFVLALCAWLLWGYSTTFLAQVGLF*
Ga0079220_100803002	3300006806	Agricultural Soil	CDASPVGGWRIFVHNCGMSSPEQETPEIEERIGSAVGKIMVLALCAFLLWGYSTSFLAQLGLF*
Ga0079220_100888991	3300006806	Agricultural Soil	MSIPEQQSPASEERIGGAIGKIIALALLAFLLWGYSTTF
Ga0075425_1008533531	3300006854	Populus Rhizosphere	VHNSSMSIAEQQTPTSEERIGSMVGKSVVLALCAFLLWGYSTTFLAQVGLF*
Ga0075426_106910892	3300006903	Populus Rhizosphere	MSIPKQQTPPIEERIGSMVGKIIVLALCAMLLWGYSTTFLAQIGLF*
Ga0079219_104513502	3300006954	Agricultural Soil	MSSPEQETLEIEERIGSAVGKTMVLALCAFLLWGYSTSFLAQLGLF*
Ga0126373_114343442	3300010048	Tropical Forest Soil	MANEEQYKPIEERIGGMVGKIIVLAICAMLLWGYSTTFLAQVGLF*
Ga0126373_121800222	3300010048	Tropical Forest Soil	MANEQQAQSIEERIGSMVGKIIVLAICAKLLWGYSTTFLAQVGLF*
Ga0126370_100462306	3300010358	Tropical Forest Soil	MANEEQYKPIEERIGGMVGKIIVLAICAMLLWGYST
Ga0126370_101328222	3300010358	Tropical Forest Soil	MSIPVQQNPPAEDRIGAAIGKIIVLALLAFLLWGYSTTFLAQVGLF*
Ga0126376_102333733	3300010359	Tropical Forest Soil	MGNEQQAQSIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLL*
Ga0126372_131763562	3300010360	Tropical Forest Soil	MSISQQQTSPIEERIGSMVGKIIVLALCAMLLWGYSTTFLGQIGLF*
Ga0126378_106601653	3300010361	Tropical Forest Soil	MSTSEQQTPPIEERIGSMVGKIIVLALCAMLLWGYSTAFLAQIGII*
Ga0126378_117350162	3300010361	Tropical Forest Soil	MANEQQAQSIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLL*
Ga0126378_117890481	3300010361	Tropical Forest Soil	NEQQRQLIEERTGSMVRKIIVLAICVMLLWDYSTTFLAQVRLL*
Ga0126379_122832321	3300010366	Tropical Forest Soil	MTNEQQRQPIEDRVGSMVGKIIVLAICAMLLWGYSTNFLAQVGLL*
Ga0126379_123118401	3300010366	Tropical Forest Soil	MSTSEQQTPPIEERIGSMVGKIIVLALCAMLLWGYSTTFLAQIGLM*
Ga0124850_10811901	3300010863	Tropical Forest Soil	MANEEQYKPIEERIGGMVGKIIVLAICAMLLWGYSTTFRQPSSRR*
Ga0126369_106871753	3300012971	Tropical Forest Soil	MANEEQYKPIEERIGGMVGKIIVLAICAMLLWGYSTTFLAQVGLL*
Ga0134110_105049411	3300012975	Grasslands Soil	LANSRVSVPEQQTPPSEERIGGAVGKIITLALLAFLLWGYSTTFMAQVGLF*
Ga0132258_109719203	3300015371	Arabidopsis Rhizosphere	MSIAEQNSLPVEERVGAMVGKVIVLALCAFLLWGYSTTFLAQVGLF*
Ga0182036_104219231	3300016270	Soil	MSISEQQVPPIEERVGGMVGKIIVLALCAMLLWGYSTTFLAQIGLI
Ga0182041_112015001	3300016294	Soil	MHNSRMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLVWGYSTAFLAQISLI
Ga0182033_110618411	3300016319	Soil	NEQQRQPIEERIGSMVGKIIVLAICAMFLWGYSTTFLAQVGLF
Ga0182033_112901982	3300016319	Soil	MSNSAQQTEPIEERIGSMVRKIFVLMLCAMLLWGYSTAFLAQI
Ga0182035_113543791	3300016341	Soil	QRQLIEERTGSMVGKIIVLAILCYAIWAYSTTFLAQVRLL
Ga0182035_119467651	3300016341	Soil	MHNSRMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAF
Ga0182032_101173352	3300016357	Soil	MANEQQRQPIEERIGSMVGKIIVLAICVMILWGYSTTFLAQVGLL
Ga0182032_116712892	3300016357	Soil	MSISERQVPPIEERIGSMEGKIIVLALCALLLWGYSTTLLAQIGLI
Ga0182040_116103571	3300016387	Soil	IANEQQRQLIEERTGSMVGKIIVLAILCYAIWAYSTTFLAQVRLL
Ga0182037_100810072	3300016404	Soil	MSIPEQQTPPVEDRIGAAVGKVIALGLFAFLLWGYSTTFLAQVGLF
Ga0182039_100112742	3300016422	Soil	MANEQQRQPIEERIGSMVGKIIVLAICAMILWGYLTTFLAQVRLL
Ga0182038_115833851	3300016445	Soil	VFDRFAQQHVLMHNSPMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0187802_1000000918	3300017822	Freshwater Sediment	MANFVHNSQMSIPEQQVPPIEERIGSMAGKIIVLALCALLLWGYSTTFLAQIGLF
Ga0187807_10483632	3300017926	Freshwater Sediment	MANFVHNSQMSIPEQQVPPIEERIGNMAGKIIVLALCALLLWGYSTTFLAQIGLF
Ga0187825_102288902	3300017930	Freshwater Sediment	MNIPNQQAPPIEERIGSMVGKVIVLALCAMLLWGYSTAFLAQIGLF
Ga0187814_100088283	3300017932	Freshwater Sediment	MANFVHNSRMSIPEQQVPPIEERIGSMAGKIIVLALCALLLWGYSTTFLAQIGLF
Ga0187822_103047862	3300017994	Freshwater Sediment	MSIAEQQTPPIEERIGGMVGKAIVLALCAFLLWGYSTTFVAQVGLF
Ga0187765_102194292	3300018060	Tropical Peatland	VSIPEQQTPPPEERIGSAVGKIIALALFAFLLWGYSTAFLAQVGLF
Ga0126371_100778982	3300021560	Tropical Forest Soil	MSIPVQQTSSAEDRIGAAIGKIIVLALLAFLLWGYSTTFLAQVGLF
Ga0126371_102279592	3300021560	Tropical Forest Soil	MANEEQYKPIEERIGGMVGKIIVLAICAMLLWGYSTTFLAQVGLF
Ga0126371_109934821	3300021560	Tropical Forest Soil	QPIEERIGSMVGKIIVLAICALLLWGYSTTFLAEVGLF
Ga0126371_111594352	3300021560	Tropical Forest Soil	MANEQQAQSIEERIGSMVGKIIVLAICAKLLWGYSTTFLAQVGLF
Ga0126371_120050631	3300021560	Tropical Forest Soil	MSLPEQQTPPIEERIGSMVGKIIVLALCAMLLWGYSTTFLAQIGLM
Ga0126371_124872932	3300021560	Tropical Forest Soil	MSIPAAQIPPIEERLGSMVGKIIVLALCALLLWGYSTTFLAQLGLF
Ga0126371_130318942	3300021560	Tropical Forest Soil	MSIPEQNSLPIEERIGTMVGKVIVLALCAFLLWGYSTTFLAQVGLF
Ga0207700_103339851	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSIPKQQTPPIEERIGSMVGKIIVLALCAMLLWGYSTTFLAQIGLF
Ga0209265_11947922	3300026308	Soil	MSVPEQQTPPSEERIGGAVGKIITLALLAFLLWGYSTTFMAQVGLF
Ga0209473_12295042	3300026330	Soil	MSVPEQQTPPSEERIGGAVGKIITLALLAFLLWGYSTTFMA
Ga0209325_10479551	3300027050	Forest Soil	MSIPKQQTPPIEERIGSMVGKIIVLTLCAMLLWGYSTTFLAQIGLF
Ga0208365_10047183	3300027070	Forest Soil	MSVPEQQTPPIEERVGSMLGKIIVLALCAMLLWGYSTTFLGQIRLF
Ga0209074_102010451	3300027787	Agricultural Soil	MSSPEQETPEIEERIGSAVGKIMVLALCAFLLWGYSTSFLAQLGLF
Ga0209465_100065732	3300027874	Tropical Forest Soil	MANEEQYKPIEERIGGMVGKIIVLAICAMLLWGYSTTFLAQVGLL
Ga0318516_100385343	3300031543	Soil	MANERQRQPIEERIGSMVGKIIVLAICAMILWGYSTTFLAQVRLL
Ga0318541_101644501	3300031545	Soil	MHNSPMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318541_107140631	3300031545	Soil	MSISERQVPPIEERIGSMVGKIIVLALCAMLLWGYSTTFLAQIGLI
Ga0318538_100317383	3300031546	Soil	MANEQQRQPIEERIGSMVGKIIVLAICAMILWGYSTTFLAQVRLL
Ga0318538_103735292	3300031546	Soil	IEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318573_100341695	3300031564	Soil	MHNSRMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318515_104846602	3300031572	Soil	SNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318561_105169802	3300031679	Soil	MSISERQVPPIEERIGSMVGKIIVLALCALLLWGYSTTLLAQIGLI
Ga0318574_102681561	3300031680	Soil	MHNSAMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0307474_102180863	3300031718	Hardwood Forest Soil	MSIPEQQTPPIEERVGSMLGKIIVLALCAMLLWGYSTTFLGQIGLF
Ga0306917_107032721	3300031719	Soil	MSRDGAQTMANEQQRQPIEERIGSMVGKIIVLAICAMFLWGYSTTFLAQVGLF
Ga0318500_103221611	3300031724	Soil	MANEQQRQPIEERIGSMVGKIIVLAICAMILWGYSTTFLAQVR
Ga0318502_102767621	3300031747	Soil	MSISEQQVPPIEDRVGSMVGKIIVLALCAMLLWGYSTTFLAQIGLI
Ga0318492_106439841	3300031748	Soil	QQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0307475_100993531	3300031754	Hardwood Forest Soil	NSPMSILEQQTPPIEERVGSMLGKIIVLALCAMLLWGYSTTFLGQIGLF
Ga0318521_100238212	3300031770	Soil	MANEQQRQPIEERIGSMVGKIIVLAICVMILWGYSTTFLAQVRLL
Ga0318546_104679922	3300031771	Soil	MSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTA
Ga0318566_102547482	3300031779	Soil	MHNSPMSNSAQKTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318547_103825962	3300031781	Soil	QVPPIEERIGSMVGKIIVLALCALLLWGYSTTLLAQIGLI
Ga0318552_103825622	3300031782	Soil	SEQQVPPIEERVGSMVGKIIVLALCAMLLWGYSTTFLAQIGLI
Ga0318552_105059822	3300031782	Soil	IEERIGSMVGKIIVLAICAMILWGYSTTFLAQVRLL
Ga0318529_101693952	3300031792	Soil	MANEQQGQPIEERIGSMVGKIIVLAICAMILWGYSTTFLAQVRLL
Ga0318548_102722672	3300031793	Soil	ISEQQVPPIEERVGSMVGKIIVLALCAMLLWGYSTTFLAQIGLI
Ga0318550_100568111	3300031797	Soil	MANEQQRQPIEKRIGSMVGKIIVLAICAMILWGYSTTFLAQVRLL
Ga0318497_107170301	3300031805	Soil	MSISEQQAPPIEERIGSMVGKIIVLALCALLLWGYSTTFLAQIGLI
Ga0307478_107406411	3300031823	Hardwood Forest Soil	QQTPPIEERVGSMLGKIIVLALCAMLLWGYSTTFLGQIGLF
Ga0318511_102228342	3300031845	Soil	HVLMHNSPMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318527_104868861	3300031859	Soil	MTNEQQRQPIEDHVGSMVGKIIVLAICAMLLWGYSTTFLAQVRLL
Ga0306919_105687961	3300031879	Soil	EQQVPPIEERVGSMVGKIIVLALCAMLLWGYSTTFLAQIGLI
Ga0306925_106781832	3300031890	Soil	MANEQQRQPIEERIGSMVGKIIVLAICAMFLWGYSTTFLAQVGLF
Ga0306925_116399832	3300031890	Soil	MSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAF
Ga0306923_100953452	3300031910	Soil	MSIHEQQTPPVEDRIGAAVGKVIALGLFAFLLWGYSTTFLAQVGLF
Ga0306921_114981172	3300031912	Soil	MHNSAMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLTQIGLI
Ga0310912_100800512	3300031941	Soil	MSIPQQQIPPIEERIGSMVGKFIVLALCAFLLWGYSTTFLAQLGLF
Ga0310916_110410032	3300031942	Soil	MANEQQAQSIEERIGSMVGKIIVLAICAMLLWGYSTTFLAQVGLF
Ga0310916_115536571	3300031942	Soil	MSISEQQVPPIEERVGSMVGKIIVLALCAMLLCGYST
Ga0310910_108163082	3300031946	Soil	MADEQQDQPIEERIGSMVGKIIVLAICAMPLWGYSTTFLAQVGLF
Ga0306922_102545911	3300032001	Soil	QRQPIEERIGSMVGKIIVLAICAMILWGYSTTFLAQVRLL
Ga0306922_102917064	3300032001	Soil	MSISEQQVPPIEERVGSMVGKIIVLALCAMLLWGYSTTFLAQ
Ga0318507_101724982	3300032025	Soil	CATVTDGAETMANEQQRQPIEERIGSMVGKIIVLAICAMILWGYSTTFLAQVRLL
Ga0318532_102776661	3300032051	Soil	MHNSRMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLN
Ga0318570_101264081	3300032054	Soil	TEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318504_101819103	3300032063	Soil	AQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318510_101369791	3300032064	Soil	MHNSPMSNSAQQTEPIEERIGSMVGKIFVLMLCAMLLWGYSTA
Ga0318525_101969711	3300032089	Soil	PIEERIGSMVGKIFVLMLCAMLLWGYSTAFLAQIGLI
Ga0318540_106117961	3300032094	Soil	EERIGSMVGKIIVLALCALLLWGYSTTLLAQIGLI
Ga0306920_1037635861	3300032261	Soil	MSISERQVPPIEERIGSMVGKIIVLALCALLLWGYSTTLLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F065663

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences