Metagenome / Metatranscriptome Family F065181

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065181
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	79 residues
Representative Sequence	MNVKTLRRLAAALVFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAAPQFLAVAPTEKDKVTAGKDGAPRAPQ
Number of Associated Samples	106
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.50 %
% of genes near scaffold ends (potentially truncated)	23.44 %
% of genes from short scaffolds (< 2000 bps)	84.38 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.156 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (14.844 % of family members)
Environment Ontology (ENVO)	Unclassified (29.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.969 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 43.64% β-sheet: 0.00% Coil/Unstructured: 56.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF13590	DUF4136	10.16
PF12146	Hydrolase_4	7.81
PF12695	Abhydrolase_5	4.69
PF12833	HTH_18	4.69
PF09980	DUF2214	3.91
PF03988	DUF347	3.91
PF01694	Rhomboid	3.12
PF06808	DctM	3.12
PF01979	Amidohydro_1	2.34
PF02622	DUF179	1.56
PF03466	LysR_substrate	1.56
PF00126	HTH_1	1.56
PF00326	Peptidase_S9	1.56
PF00990	GGDEF	1.56
PF12680	SnoaL_2	1.56
PF08281	Sigma70_r4_2	1.56
PF00581	Rhodanese	1.56
PF03795	YCII	1.56
PF01575	MaoC_dehydratas	0.78
PF03475	3-alpha	0.78
PF03473	MOSC	0.78
PF00067	p450	0.78
PF02803	Thiolase_C	0.78
PF13511	DUF4124	0.78
PF13505	OMP_b-brl	0.78
PF03807	F420_oxidored	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG4705	Uncharacterized membrane-anchored protein	Function unknown [S]	3.91
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	3.12
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	1.56
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.56
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.78
COG2124	Cytochrome P450	Defense mechanisms [V]	0.78
COG2258	N-hydroxylaminopurine reductase YiiM, contains MOSC domain	Defense mechanisms [V]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.16 %
Unclassified	root	N/A	14.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.16 %
Unclassified	root	N/A	14.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.16 %
Unclassified	root	N/A	14.84 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.16 %
Unclassified	root	N/A	14.84 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	4.69 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	17.97 %
Unclassified	root	N/A	14.84 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	14.06 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	4.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.78 %

Name	Rank	Taxonomy	Distribution
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	17.19 %
Unclassified	root	N/A	14.84 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	5.47 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	4.69 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.78 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	17.19 %
Unclassified	root	N/A	14.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.47 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	4.69 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	1.56 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	17.19 %
Unclassified	root	N/A	14.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.47 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	4.69 %
Azohydromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas	0.78 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	17.19 %
Unclassified	root	N/A	14.84 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	5.47 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	4.69 %
Azohydromonas australica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas australica	0.78 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100774553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1189	Open in IMG/M
3300001139\|JGI10220J13317_10848837	Not Available	570	Open in IMG/M
3300004156\|Ga0062589_101338421	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300004463\|Ga0063356_103413267	Not Available	684	Open in IMG/M
3300004479\|Ga0062595_100063866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1768	Open in IMG/M
3300004643\|Ga0062591_101438672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	686	Open in IMG/M
3300005294\|Ga0065705_10302644	All Organisms → cellular organisms → Bacteria → Proteobacteria	1050	Open in IMG/M
3300005295\|Ga0065707_10031560	All Organisms → cellular organisms → Bacteria → Proteobacteria	1074	Open in IMG/M
3300005295\|Ga0065707_10133874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1874	Open in IMG/M
3300005330\|Ga0070690_100055832	All Organisms → cellular organisms → Bacteria → Proteobacteria	2530	Open in IMG/M
3300005332\|Ga0066388_100581846	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300005332\|Ga0066388_104813707	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005338\|Ga0068868_100284988	All Organisms → cellular organisms → Bacteria → Proteobacteria	1399	Open in IMG/M
3300005343\|Ga0070687_100300088	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300005364\|Ga0070673_101094540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	744	Open in IMG/M
3300005439\|Ga0070711_101321638	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300005439\|Ga0070711_101674965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	557	Open in IMG/M
3300005577\|Ga0068857_101072767	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300005618\|Ga0068864_100202128	All Organisms → cellular organisms → Bacteria → Proteobacteria	1826	Open in IMG/M
3300005719\|Ga0068861_100325901	All Organisms → cellular organisms → Bacteria → Proteobacteria	1339	Open in IMG/M
3300005842\|Ga0068858_101669310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	629	Open in IMG/M
3300006163\|Ga0070715_10099979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1351	Open in IMG/M
3300006163\|Ga0070715_10512084	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300006173\|Ga0070716_101646270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas → Azohydromonas australica	528	Open in IMG/M
3300006196\|Ga0075422_10266751	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300006604\|Ga0074060_11476198	Not Available	574	Open in IMG/M
3300006605\|Ga0074057_11961736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	519	Open in IMG/M
3300006844\|Ga0075428_100140274	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2628	Open in IMG/M
3300006845\|Ga0075421_100114664	All Organisms → cellular organisms → Bacteria → Proteobacteria	3385	Open in IMG/M
3300006846\|Ga0075430_100393119	Not Available	1144	Open in IMG/M
3300006847\|Ga0075431_101187522	Not Available	726	Open in IMG/M
3300006852\|Ga0075433_10420722	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300006854\|Ga0075425_100633041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1230	Open in IMG/M
3300006880\|Ga0075429_100248789	All Organisms → cellular organisms → Bacteria → Proteobacteria	1556	Open in IMG/M
3300006880\|Ga0075429_100478416	Not Available	1091	Open in IMG/M
3300009094\|Ga0111539_11593394	Not Available	757	Open in IMG/M
3300009100\|Ga0075418_10012143	All Organisms → cellular organisms → Bacteria → Proteobacteria	9598	Open in IMG/M
3300009100\|Ga0075418_12459226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	568	Open in IMG/M
3300009147\|Ga0114129_10060330	All Organisms → cellular organisms → Bacteria → Proteobacteria	5303	Open in IMG/M
3300009156\|Ga0111538_10375827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1799	Open in IMG/M
3300009162\|Ga0075423_11192899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	812	Open in IMG/M
3300009162\|Ga0075423_11968237	Not Available	632	Open in IMG/M
3300009609\|Ga0105347_1423223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	574	Open in IMG/M
3300009610\|Ga0105340_1426647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	592	Open in IMG/M
3300009678\|Ga0105252_10012507	All Organisms → cellular organisms → Bacteria → Proteobacteria	3003	Open in IMG/M
3300010046\|Ga0126384_10698706	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300010397\|Ga0134124_10015164	All Organisms → cellular organisms → Bacteria → Proteobacteria	6261	Open in IMG/M
3300010397\|Ga0134124_10833551	Not Available	924	Open in IMG/M
3300010400\|Ga0134122_10002054	All Organisms → cellular organisms → Bacteria → Proteobacteria	14749	Open in IMG/M
3300010401\|Ga0134121_12465470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	562	Open in IMG/M
3300010403\|Ga0134123_12165429	Not Available	617	Open in IMG/M
3300011416\|Ga0137422_1068500	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300011439\|Ga0137432_1063114	All Organisms → cellular organisms → Bacteria → Proteobacteria	1126	Open in IMG/M
3300011439\|Ga0137432_1086409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	971	Open in IMG/M
3300011440\|Ga0137433_1263697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	561	Open in IMG/M
3300011442\|Ga0137437_1019664	All Organisms → cellular organisms → Bacteria	2321	Open in IMG/M
3300011445\|Ga0137427_10001746	All Organisms → cellular organisms → Bacteria	9610	Open in IMG/M
3300011445\|Ga0137427_10110571	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
3300012175\|Ga0137321_1157693	Not Available	503	Open in IMG/M
3300012179\|Ga0137334_1120685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	593	Open in IMG/M
3300012212\|Ga0150985_100071752	Not Available	533	Open in IMG/M
3300012212\|Ga0150985_103748148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	683	Open in IMG/M
3300012212\|Ga0150985_104583678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	708	Open in IMG/M
3300012469\|Ga0150984_106088732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1403	Open in IMG/M
3300012481\|Ga0157320_1035162	Not Available	522	Open in IMG/M
3300012957\|Ga0164303_10116341	All Organisms → cellular organisms → Bacteria → Proteobacteria	1355	Open in IMG/M
3300012960\|Ga0164301_10060510	All Organisms → cellular organisms → Bacteria → Proteobacteria	2002	Open in IMG/M
3300015170\|Ga0120098_1037053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	660	Open in IMG/M
3300015371\|Ga0132258_12855511	All Organisms → cellular organisms → Bacteria → Nitrospirae	1202	Open in IMG/M
3300015373\|Ga0132257_100327498	Not Available	1846	Open in IMG/M
3300015374\|Ga0132255_100039162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6079	Open in IMG/M
3300015374\|Ga0132255_103489385	Not Available	669	Open in IMG/M
3300015374\|Ga0132255_105216955	Not Available	550	Open in IMG/M
3300018422\|Ga0190265_10742316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1104	Open in IMG/M
3300018422\|Ga0190265_11790152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	723	Open in IMG/M
3300019228\|Ga0180119_1214170	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300019244\|Ga0180111_1318160	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300019254\|Ga0184641_1154169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	883	Open in IMG/M
3300019257\|Ga0180115_1290965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	704	Open in IMG/M
3300019263\|Ga0184647_1479717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	583	Open in IMG/M
3300021082\|Ga0210380_10204492	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300024181\|Ga0247693_1046364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	623	Open in IMG/M
3300024186\|Ga0247688_1009985	All Organisms → cellular organisms → Bacteria	1325	Open in IMG/M
3300024187\|Ga0247672_1008174	All Organisms → cellular organisms → Bacteria → Proteobacteria	1665	Open in IMG/M
3300024219\|Ga0247665_1042079	All Organisms → cellular organisms → Bacteria → Nitrospirae	621	Open in IMG/M
3300024224\|Ga0247673_1014495	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300024249\|Ga0247676_1087476	All Organisms → cellular organisms → Bacteria → Nitrospirae	518	Open in IMG/M
3300024286\|Ga0247687_1013156	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300024287\|Ga0247690_1003827	All Organisms → cellular organisms → Bacteria	1839	Open in IMG/M
3300024290\|Ga0247667_1007918	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300025918\|Ga0207662_10670743	All Organisms → cellular organisms → Bacteria → Nitrospirae	725	Open in IMG/M
3300025960\|Ga0207651_11628945	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300026023\|Ga0207677_10605349	All Organisms → cellular organisms → Bacteria → Nitrospirae	962	Open in IMG/M
3300026078\|Ga0207702_10265690	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300026088\|Ga0207641_11951020	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300026095\|Ga0207676_10180005	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300027523\|Ga0208890_1047528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	675	Open in IMG/M
3300027533\|Ga0208185_1167733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	502	Open in IMG/M
3300027573\|Ga0208454_1002386	All Organisms → cellular organisms → Bacteria → Proteobacteria	6466	Open in IMG/M
3300027907\|Ga0207428_10052471	All Organisms → cellular organisms → Bacteria → Proteobacteria	3256	Open in IMG/M
3300027907\|Ga0207428_10346073	All Organisms → cellular organisms → Bacteria → Nitrospirae	1094	Open in IMG/M
3300027909\|Ga0209382_10227036	All Organisms → cellular organisms → Bacteria → Proteobacteria	2129	Open in IMG/M
3300028381\|Ga0268264_10054490	All Organisms → cellular organisms → Bacteria → Proteobacteria	3340	Open in IMG/M
3300028812\|Ga0247825_10001916	All Organisms → cellular organisms → Bacteria	13773	Open in IMG/M
3300031184\|Ga0307499_10002680	All Organisms → cellular organisms → Bacteria → Proteobacteria	4292	Open in IMG/M
3300031562\|Ga0310886_10048511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1907	Open in IMG/M
3300031720\|Ga0307469_10356507	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300031720\|Ga0307469_10748266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	891	Open in IMG/M
3300031720\|Ga0307469_10876382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	830	Open in IMG/M
3300031820\|Ga0307473_10180896	All Organisms → cellular organisms → Bacteria → Proteobacteria	1233	Open in IMG/M
3300031820\|Ga0307473_10718661	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300031820\|Ga0307473_11143788	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031858\|Ga0310892_11110546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	561	Open in IMG/M
3300032013\|Ga0310906_10140069	Not Available	1395	Open in IMG/M
3300032017\|Ga0310899_10381356	Not Available	672	Open in IMG/M
3300032174\|Ga0307470_10255453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1161	Open in IMG/M
3300032180\|Ga0307471_100136264	All Organisms → cellular organisms → Bacteria	2327	Open in IMG/M
3300032180\|Ga0307471_100277254	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300032180\|Ga0307471_100703218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1175	Open in IMG/M
3300032205\|Ga0307472_100397042	All Organisms → cellular organisms → Bacteria → Proteobacteria	1152	Open in IMG/M
3300032211\|Ga0310896_10557652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	635	Open in IMG/M
3300033551\|Ga0247830_10786088	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300034113\|Ga0364937_147145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	509	Open in IMG/M
3300034149\|Ga0364929_0077647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1030	Open in IMG/M
3300034666\|Ga0314788_110861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	629	Open in IMG/M
3300034671\|Ga0314796_055438	Not Available	767	Open in IMG/M
3300034690\|Ga0364923_0090477	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300034819\|Ga0373958_0024730	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.41%
Host-Associated	Host-Associated	33.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.78%
Plants	Host-Associated → Plants	33.59%
Aquatic	Environmental → Aquatic	15.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.62%
Sediment	Environmental → Aquatic → Sediment	10.94%
Freshwater	Environmental → Aquatic → Freshwater	4.69%
Floodplain	Environmental → Terrestrial → Floodplain	2.34%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.38%
Loam	Environmental → Terrestrial → Soil → Loam	7.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.25%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.12%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.34%
Fossil	Environmental → Terrestrial → Soil → Fossil	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.12%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.34%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.56%
Unclassified	Environmental → Terrestrial → Soil → Fossil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.84%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	10.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.03%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.34%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.34%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.34%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.34%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.78%
Fossill	Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.78%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015170	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300024249	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300024287	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1007745532	3300000364	Soil	MNVKTLRRIGAAFVFASLAQSAFAQTLGEHPAVIAAREWNSRGIDPNTFIVLHPAATQFLAAAPTEKEKVAASKDDAPRAQ*
JGI10220J13317_108488371	3300001139	Soil	AMNLKTLRPFAAALVLASLAHSAIAETLGEHPAVIVARTWSAREIDPNTFIVLHPAAPQFSAASPTGKDKANREQAQRAANVR*
Ga0062589_1013384211	3300004156	Soil	AALVFGSLATSAIAETLGEHPAVIVAREWNSRGVDPNTFIVLHPAAPQFLAVAPTEKDKVTAGKDGAPQAPQ*
Ga0063356_1034132671	3300004463	Arabidopsis Thaliana Rhizosphere	MNLKTLRPFAAALVLASLAHSAIAETLGEHPAVIVARTWSAREIDPNTFIVLHPAAPQFSAASPTGKDKANREQAQRAANVR*
Ga0062595_1000638664	3300004479	Soil	MNVKTLRRLAAALVFGSLATSAIAQTLGEHPAVVVAREWNSRGIDPNTFIVLHPAAPQFLAAAPTEKDKVTATKQGAPRTQ*
Ga0062591_1014386721	3300004643	Soil	AAALVFGSLATSAIAQTLGEHPAVVVAREWNSRGIDPNTFIVLHPAAPQFLAAAPTEKDKVTATKQGAPRTQ*
Ga0065705_103026443	3300005294	Switchgrass Rhizosphere	MNVKTLQRLGAALVFASVAGSALAQSLGEHPAVVVAREWNSRGIDPNSFIVLPPAATQFLAAAPAEEDKVAASQHGTLLAQ*
Ga0065707_100315603	3300005295	Switchgrass Rhizosphere	MNVKVLRTLAAALVLASLATSAIAETLGEHPAVIVAREWSTRGIDPNTFIVLHPAATQFLAAAPAEKDQHGTPPAQ*
Ga0065707_101338743	3300005295	Switchgrass Rhizosphere	MNVKTLQRLGAALVFASVAGSALAQSLGEHPAVVVAREWNSRGIDPNSFIVLPPAATQFLAAAPAEKDKVEASKQAAQ*
Ga0070690_1000558322	3300005330	Switchgrass Rhizosphere	MNIKTLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG*
Ga0066388_1005818462	3300005332	Tropical Forest Soil	MNVNVKALRRLVAALVFGSLATSAIAEGLGEHPAVAVARTWDARGIDPNTFIVLHPAAPQFLAASQTEEVRVATSTQGTVRTQ*
Ga0066388_1048137072	3300005332	Tropical Forest Soil	MNIHTLRRLAIALVLGSLATSAIAEGLGEHPAVIVARTWNDRGIDPNTFIVLHPAAPQFVAAPQAEKADKVRGAAVRPAVARTGG*
Ga0068868_1002849882	3300005338	Miscanthus Rhizosphere	MNIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPTAPQFFAAAPTDKADKVAKDGARTPQAGRGG*
Ga0070687_1003000882	3300005343	Switchgrass Rhizosphere	MNIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG*
Ga0070673_1010945402	3300005364	Switchgrass Rhizosphere	MSIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG*
Ga0070711_1013216381	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VNIKTLKRLAVALVFGSLATSALAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPRFLAAAPTDRADKV
Ga0070711_1016749652	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNVKTLQRLAAVLVFGSLATSAIAEGLGEHPAVIVARTWNDRGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARAPQAGRGG*
Ga0068857_1010727672	3300005577	Corn Rhizosphere	MSIKTLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG*
Ga0068864_1002021282	3300005618	Switchgrass Rhizosphere	MNIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARMPQAGRGG*
Ga0068861_1003259012	3300005719	Switchgrass Rhizosphere	MSIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDK
Ga0068858_1016693101	3300005842	Switchgrass Rhizosphere	VLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG*
Ga0070715_100999792	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MNVKTLQRLAAVLVFGSLATSAIAEGLGEHPAVIVARTWNDRGIDPNTFIVLHPAAPQFFAASPTDKADKVAKDGARAPQAGRGG*
Ga0070715_105120842	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VNIKTLKRLAVALVFGSLATSALAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPRFLAAAPTDRADKVAKDGARAPQAGRGG*
Ga0070716_1016462701	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VNIKTLKRLAVALVFGSLATSALAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPRFLAAAPTDRADKVPKDGARAPQAGRGG*
Ga0075422_102667512	3300006196	Populus Rhizosphere	MNLKTLQRLGAALVFASVAGSALAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATRFLAAAPAEEDKAKASEQAAR*
Ga0074060_114761981	3300006604	Soil	MNVKTLRRLAAALGFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTLIVLHPAAPQFLAAAPTEKDKVTASKHGAPQTP*
Ga0074057_119617362	3300006605	Soil	MNVKTLRRLAAALVFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAAPQFLAVAPTEKDKVAAGEDGAPQAAQ*
Ga0075428_1001402742	3300006844	Populus Rhizosphere	MNAKTLQWLGAGLLFASVAGSAMAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEEDKAKASEQAAR*
Ga0075421_1001146642	3300006845	Populus Rhizosphere	MNAKTLQWLGAGLLFASVAGSAMAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEKDKAKASEQAAR*
Ga0075430_1003931192	3300006846	Populus Rhizosphere	MNAKTLQWLGAGLVFASVAGSAVAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEKDKAKASEQAAR*
Ga0075431_1011875222	3300006847	Populus Rhizosphere	MNVKTLRRVAVAFVLGSLAHSAIAETLGEHPAVIVARTWSTREIDPNTFIVLHPAAPQFVAESSSEKGKA
Ga0075433_104207223	3300006852	Populus Rhizosphere	MNVKTLRRLGAALVFASVAGSAVAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEKDKAKASEQAAR*
Ga0075425_1006330413	3300006854	Populus Rhizosphere	AMNVKRLRPLAAALVFASLATSAIAETLGEHPAVIAAREWSTRGIDPNTFIVLHPAAPQFVAVPPAEKENVTASKQPAR*
Ga0075429_1002487893	3300006880	Populus Rhizosphere	MNAKTLQWLGAGLLFASVAGSAMAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATRFLAAAPAEEDKAKASEQAAR*
Ga0075429_1004784162	3300006880	Populus Rhizosphere	MNVKTLRRVAVAFVLGSLAHSAIAETLGEHPAVIVARTWSTREIDPNTFIVLHPAAPQFVAESSSEKGKADASKHGASRAR*
Ga0111539_115933942	3300009094	Populus Rhizosphere	LVFASVAGSAVAQSLGEHPAVVVAREWSTRGIDPNSFIVLPPAATQFLAAAPAEGSD*
Ga0075418_1001214310	3300009100	Populus Rhizosphere	MNAKTLQWLGAGLVFASVAGSAVAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEEDKAKASEQAAR*
Ga0075418_124592262	3300009100	Populus Rhizosphere	MNVTTLRRLATALVFASLAHSAIAETPGEHPAVIVARTWSTQGIDPNTFIVRHPAAPQFVAVSPTEKEKVTATKHGARQTR*
Ga0114129_100603303	3300009147	Populus Rhizosphere	MNAKTLQWLGAGLVFASVAGSAMAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEKDKAKASEQAAR*
Ga0111538_103758272	3300009156	Populus Rhizosphere	MNVKTLRRLGAALVFASVAGSAVAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEEDKAKASEQAAR*
Ga0075423_111928991	3300009162	Populus Rhizosphere	MNVKRLRPLAAALVFASLATSAIAETLGEHPAVIAAREWSTRGIDPNTFIVLHPAAPQFVAVPPAEKENVTASKQPAR*
Ga0075423_119682372	3300009162	Populus Rhizosphere	MNVKTLQRLGAALVFASVAGSALAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEKDKAKASEQSAR*
Ga0105347_14232232	3300009609	Soil	MNVKTLRRLAAALVFAPLASSAIAQTLGEHPAVIVARTWSTQGIDPNTFIVQHPAAPQYLAVSPAEKEKVAASKDGATQTR*
Ga0105340_14266471	3300009610	Soil	MNVKTLRRLAAALVFAPLASSAIAQTLGEHPAVIVARTWSTQGIDPNTFIVQHPAAPQYLAVSPAEKEKVAA
Ga0105252_100125073	3300009678	Soil	MNVKTLRPFVVALVLASLAHSAIAETLGEHPAVIVARTWSNRGIDPNTFIVLHPAAPQFLAASPTEKDRAAPKQTMR*
Ga0126384_106987061	3300010046	Tropical Forest Soil	MNIKTLRRLAAALVLGSLATSAIAEGLGEHPAVIVARTWNDRGIDPNTFIVLHPAAPQFVAAPAEKAEKVAKSGARAPLAGRGG*
Ga0134124_100151645	3300010397	Terrestrial Soil	MNLKTLQRLGAALLFASVAGSAIAQSLGEHPAVVVAREWSTRGIDPNSFIVLPPAATQFLAAAPAEGSD*
Ga0134124_108335512	3300010397	Terrestrial Soil	MNVKTLRRLAAALVFGSLATSAIAESLAEHPAVIVAREWNSQGIDPNSFIVLHPAAPKFLAASPAEKDKVEAGKHSAPQTP*
Ga0134122_100020548	3300010400	Terrestrial Soil	MNVKTLRRLAAALVFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNAFIVLHPAAPQFVGVSPAEEDKVTAGKDGGPQAPQ*
Ga0134121_124654702	3300010401	Terrestrial Soil	GSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPRFLAAAPTDRADKVAKDGARAPQAGRGG*
Ga0134123_121654292	3300010403	Terrestrial Soil	MNLQMLGRRLAAALVLGSLATSAIAESLAEHPAVIVAREWNSQGIDPNAFIVLHPAAPKFLAASPAEKDKVEAGKHSAPQTP*
Ga0137422_10685002	3300011416	Soil	MNVKTLRPFVAALVLASLAHSAIAETLGEHPAVIAARTWSNRGIDPNTFIVLHPAAPQFLAASPTEKDRAAPKQTMR*
Ga0137432_10631142	3300011439	Soil	MNVKMVRRLAAALVLGSLASSAIAQTLGEHPAVIVARTWSTQGIDPNAFIVLHPAATQFLAVSPTEKDKATASKHGAPRTP*
Ga0137432_10864092	3300011439	Soil	MNVKTLRRLAAALVFGSLAGSAIAQPLGEHPAVIVARTWSTQGIDPNTFIVQHPAAPQYLAVSPAEKDKVAAGKDAAPQAR*
Ga0137433_12636972	3300011440	Soil	MNVKTLRRLAAALVFGSLAHSAIAETLGEHPAVIVAREWSIRGIDPNTFIVLHPAATQFLAVSPTEKDKATASKHGAPRTP*
Ga0137437_10196642	3300011442	Soil	MNVKTLRRLAAALVFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPSAAQFLAAAPAEKDKVAAGKDGAPRAPQ*
Ga0137427_1000174610	3300011445	Soil	MNVKTLRPFVVALVLASLAHSAIAETLGEHPAVIVARTWSNRGIDPNAFIVLHPAAPQFLAASPTEKDRAAPKQTMR*
Ga0137427_101105711	3300011445	Soil	MNVKTLRRLAAALVLGSLASSAIAQTLGEHPAVIVARTWSTQGIDPNAFIVLHPAAPQFVAVSPTEKDKATASKHGAPRTP*
Ga0137321_11576931	3300012175	Soil	MNVKTLRRLAAALVFGSLASSAIAQTLGEHPAVIVARTWSTQGIDPNAFIVLHPAAPQFVAVSPSEKDKVRASKHGAPRTP
Ga0137334_11206852	3300012179	Soil	MNVKTLRRLAAALVLGSLASSAIAQTLGEHPAVIVARTWSTQGIDPNTFIVLHPAAPQFVAISPTEKDKATASKHGAPRTP*
Ga0150985_1000717522	3300012212	Avena Fatua Rhizosphere	MNVKTLRRLAAAFVFGSLATSAIAESLAEHPAVIVAREWNSQGIDPNTFIVLPPAATQFTASSPTEKDKEAASKHGAPRTP*
Ga0150985_1037481481	3300012212	Avena Fatua Rhizosphere	MNVKTLRRLAAALVFGSLATSAIAESLGEHPAVIVAREWNSQGIDPNTFIVLHPAAPKFVAASPAEKGKVEAGKHSAPQTP*
Ga0150985_1045836781	3300012212	Avena Fatua Rhizosphere	MNVKTLRRLAAAIVFGSLATSALAEALGEHPAVIVAREWNSRGIDPNTFIVLHPAAPQFLAASPAEKDRVVDGKRP*
Ga0150984_1060887323	3300012469	Avena Fatua Rhizosphere	MNLQTLGRRLAAALVLGSLATSAIAESLAEHPAVIVAREWNSQGIDPNAFIVLHPAAPKFLAASPAEKDKVEAGKHAAPQTP*
Ga0157320_10351622	3300012481	Arabidopsis Rhizosphere	MNLKTLQRLGAALLFASVAGSAIAQSLGEHPAVVVAREWSTREIDPNTFIVLHPAAPHFLAAAPAEK
Ga0164303_101163412	3300012957	Soil	MNVKTLWRLIAALVFGSLATSAIAEGLGEHPAVIVARTWNTRGIDPNTFIVLHPAAPRFLAGSEADEGGVAPSARVAVRAQ*
Ga0164301_100605104	3300012960	Soil	MNVKTLWRLVAALVFGSLATSAIAEGLGEHPAVIVARTWNTRGIDPNTFIVLHPAAPRFLAGSEADEGGVAPSARVAVRAQ*
Ga0120098_10370532	3300015170	Fossill	MNLKSLRPLAAALAIASFAESAVADTLGEHPAVLVARTWSARGIDPNTFIVLHPAGPMFLAESPTERAAREQAQRALLRFSTATNRAERPAD*
Ga0132258_128555112	3300015371	Arabidopsis Rhizosphere	MNIKTLRRLAAALVFGSLATSAVAEGLGEHPAVIVARTWNNRGIDPNTFIVLHPAAPRFLAGSEADEGGIAPSARVAVRAQ*
Ga0132257_1003274982	3300015373	Arabidopsis Rhizosphere	MNLKTLQRLGAALLFASVAGSAIAQSLGEHPAVVVAREWNSRGIDPNSFIVLPPAATQFLAAAPAEKDKVEASKQAAQ*
Ga0132255_1000391627	3300015374	Arabidopsis Rhizosphere	MNVKVLRTLAAALVLASLATSAIAETLGEHPAVIVAREWSTRGIDPNTFIVLPPAATQFLAAAPAEKDQHGTPPAQ*
Ga0132255_1034893852	3300015374	Arabidopsis Rhizosphere	AALVFASAAGSALAQSLGEHPAVVVAREWNSRGIDPNSFIVLPPAATQFLAAAPAEKDKVEASKQAAQ*
Ga0132255_1052169551	3300015374	Arabidopsis Rhizosphere	MNVKVLRPLSAALVLASLATSAIAETLGEHPAVIVAREWSTREIDPNTFIVLHPAAPHFLAAAPAEKDKATAH*
Ga0190265_107423163	3300018422	Soil	MNAKTLRPFVAALVLASLAHSAIAEALGQHPAVIVARTWSNHGIDPNTFIVLHPAAPQFLAASPTE
Ga0190265_117901522	3300018422	Soil	MNVRTLRPFVAALVLASLAHSAIAETLGEHPAVIVARTWSNRGIDPNTFVVLHPAAPQFLAASPTEI
Ga0180119_12141701	3300019228	Groundwater Sediment	MNVTTLRRLAAALVFASLAHSAIAETLGEHPAVIVAREWSIRGIDPNTFIVLHPAATQFLAVSPAEKDKATASKHGAPRTP
Ga0180111_13181601	3300019244	Groundwater Sediment	MNVKMVRRLAAGLVFASLAHSAIAQTLGEHPAVIVARTWSIQGIDPNTFIVLHPAATQFLAVSPAEKDKATASKHGAPRTP
Ga0184641_11541692	3300019254	Groundwater Sediment	MNVATLRRLAAALVLASLAHSAIAETLGEHPAVIVARTWSTRGIDPNTFIVQHPAAPQFLAASPTGKDKVTASKDERLK
Ga0180115_12909652	3300019257	Groundwater Sediment	MNVKTLRRLAAALVFAPLASSAIAQTLGEHPAVIVARTWSTQGIDPNTFIVQHPAAPQYLAVSPAEKEKVAASKDGATQTR
Ga0184647_14797172	3300019263	Groundwater Sediment	MNVKTLRRLAAALVFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAAPQFLAVAPTEKDKVTAGKDGAPRAPQ
Ga0210380_102044921	3300021082	Groundwater Sediment	MNVKTLRRLAAALVFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAAPQFLAVAPTEKDNVTTGKDGAPQAPQ
Ga0247693_10463641	3300024181	Soil	MNMKTLQRLVAALVFGSLATSAIAEGLGEHPAVIVARTWNQRGIDPNTFIVLHPAAPQFFAAAPSDKADKVAKDAARAPQAGRGG
Ga0247688_10099851	3300024186	Soil	TLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG
Ga0247672_10081743	3300024187	Soil	LQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG
Ga0247665_10420791	3300024219	Soil	MNIKTLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRG
Ga0247673_10144952	3300024224	Soil	MNMKTLQRLVAALVFGSLATSAIAEGLGEHPAVIVARTWNQRGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARMPQAGRGG
Ga0247676_10874762	3300024249	Soil	MNIKTLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPT
Ga0247687_10131561	3300024286	Soil	MSIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARMPQAGRGG
Ga0247690_10038272	3300024287	Soil	MNIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG
Ga0247667_10079182	3300024290	Soil	MNIKTLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPSDKADKVAKDGARTPQAGRGG
Ga0207662_106707432	3300025918	Switchgrass Rhizosphere	MNIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPSDKADKVAKDGARTPQAGRGG
Ga0207651_116289451	3300025960	Switchgrass Rhizosphere	LQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG
Ga0207677_106053491	3300026023	Miscanthus Rhizosphere	MNIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPTAPQFFAAAPTDKADKVAKDGARTPQAGRGG
Ga0207702_102656902	3300026078	Corn Rhizosphere	MSIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARTPQAGRGG
Ga0207641_119510202	3300026088	Switchgrass Rhizosphere	MNVKTLRRLAAALVFGSLATSAIAQTLGEHPAVVVAREWNSRGIDPNTFIVLHPAAPQFLAAAPTEKDKVTATKQGAPRTQ
Ga0207676_101800052	3300026095	Switchgrass Rhizosphere	MNIKTLQRLAAALVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVAKDGARMPQAGRGG
Ga0208890_10475281	3300027523	Soil	MRVKTLRRLAAALVLGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAAPRFLAVAPTEKDKVAAGEDGAPQAAQ
Ga0208185_11677331	3300027533	Soil	MNVKTLRRLAAALVFAPLASSAIAQTLGEHPAVIVARTWSTQGIDPNTFIVQHPAAPQYLAVSPAEKEKVA
Ga0208454_10023864	3300027573	Soil	MNVKTLRPFVVALVLASLAHSAIAETLGEHPAVIVARTWSNRGIDPNTFIVLHPAAPQFLAASPTEKDRAAPKQTMR
Ga0207428_100524715	3300027907	Populus Rhizosphere	MNAKTLQWLGAGLVFASVAGSAVAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEKDKAKASEQAAR
Ga0207428_103460732	3300027907	Populus Rhizosphere	MNIKTLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPAAPQFFAAAPTDKADKVA
Ga0209382_102270363	3300027909	Populus Rhizosphere	MNAKTLQWLGAGLLFASVAGSAMAQSLGEHPAVVVAREWNSREIDPNSFIVLPPAATQFLAAAPAEKDKAKASEQAAR
Ga0268264_100544903	3300028381	Switchgrass Rhizosphere	MNIKTLQRLAAAFVLGSLATSAVAEGLGEHPAVIVARTWNARGIDPNTFIVLHPTAPQFFAAAPTDKADKVAKDGARTPQAGRGG
Ga0247825_1000191619	3300028812	Soil	MNVKTLRGLAAALGFASLATSAIAENLGEHPAVIVARTWTTQGIDPNTFIVLHPAAPKLLAVSPTEEDKVTASKPGAPRAP
Ga0307499_100026801	3300031184	Soil	MKVKTLQRLAAALVFGSLATSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAAPRFLAVPPTEEDKAAASKDSAPRTP
Ga0310886_100485112	3300031562	Soil	MNVKTLQRLGAALVFASVAGSALAQSLGEHPAVVVAREWNSRGIDPNSFIVLPPAATQFLAAAPAEKDKVEASKQAAQ
Ga0307469_103565071	3300031720	Hardwood Forest Soil	MNVKTLRPLAAAALVVASLAQPATAETLGDHPAVLVARTWSARGIDPNTFIVAHPARLELLAVPPTERDETAREQAPGAPNAASALE
Ga0307469_107482661	3300031720	Hardwood Forest Soil	VLASLAGSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAGTQLPAAAPAAKEKVEASEQGAPRAQ
Ga0307469_108763822	3300031720	Hardwood Forest Soil	MNVKTLRRVAAALVFGSLASSAIAQTLGDHPAVIVARTWSTQGIDPNTFIVQHPAAPQYLAVSPAEKDKVTASRHAAPQTR
Ga0307473_101808962	3300031820	Hardwood Forest Soil	MVRTLRRLGAALVLASLAGSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAGTQLPAAAPAAKEKAAASEQGAPRAQ
Ga0307473_107186612	3300031820	Hardwood Forest Soil	MNVKTLRRLAAALVLAPLAHSAIAQTSGDHPAVIVARTWSTQGIDPNTFIVLHPAAPQFVAVSPAEKEKLAASKHGATQTR
Ga0307473_111437882	3300031820	Hardwood Forest Soil	MNVKTLRRLAAALVLAPLAHSAIAQTLGEHPAVIVARTWSTQGIDPNTFIVQHPAAPQYLAVSPAEKDKAEASKQGAPQTR
Ga0310892_111105461	3300031858	Soil	MNVKTLRGLAAALGFASLATSAIAENLGEHPAVIVARTWTTQGIDPNTFIVLHPAAPKLLAASPTEED
Ga0310906_101400693	3300032013	Soil	MNVKTLQRLGAALVFASVAGSALAQSLGEHPAVVVAREWNSRGIDPNSFIVLPPAATQFLAAAPAEKDKVEASKQ
Ga0310899_103813562	3300032017	Soil	MNLKTLQRLGAALLFASVAGSAIAQSLGEHPAVVVAREWNSRGIDPNSFIVLPPAATQFLAAAPAEKDKVEASKQAAQ
Ga0307470_102554532	3300032174	Hardwood Forest Soil	MNVKTLRRLAAALVLAPLAHSAIAQTSGDHPAVIVARTWSTQGIDPNTFIVLHPAAPKFLAVSPADKDKVTASKQGAPQAR
Ga0307471_1001362642	3300032180	Hardwood Forest Soil	MNVKTLRPLVAALVLGSLAHAAIAETLGEHPAVIVARTWGTRGIDPNTFIVLHPAAPEFLAASPTEKGKATREQAPSAVSAQKETMR
Ga0307471_1002772542	3300032180	Hardwood Forest Soil	MNVKTLRRLAAALVLAPLAHSAIAQTTGDHPAVIVARTWSTQGIDPNTFIVLHPAAPQFVAVSPAEKEKLAASKHRATQTR
Ga0307471_1007032182	3300032180	Hardwood Forest Soil	MVRTLRRLGAALVLASLAGSAIAETLGEHPAVIVAREWNSRGIDPNTFIVLHPAGTQLPAAAPAAKEKVAASEQGAPRAQ
Ga0307472_1003970422	3300032205	Hardwood Forest Soil	MNVKTLRPLVAALVLGSLAHAAIAETLGEHPAVIVARTWGTRGIDPNTFIVLHPAAPEFLAASPTEKGKATREQAPFAVSAQKETMR
Ga0310896_105576522	3300032211	Soil	MNVKTLRGLAAALGFASLATSAIAENLGEHPAVIVARTWSTQGIDPNTFIVLHPAAPQFLAAAPTEKDKVAASKHAAPRAP
Ga0247830_107860881	3300033551	Soil	MNVKTLWRLVAALGFASLATSAIAENLGEHPAVIVAREWNSRGIDPNTFIVLHPAAPRFLAGSEADEGGVAPSARVAVRAQ
Ga0364937_147145_3_212	3300034113	Sediment	MNVKTLRPLAAAALVVASLAQPAIAESLGEHPSVIVARTWSARGIDPNTFIVAHPARLELLAASPTERDK
Ga0364929_0077647_245_490	3300034149	Sediment	MNVKTLRRLAAALVFAPLASSAIAQTLGEHPAVIVARTWSNQGIDPNTFIVQHPAAPQYLAVSPAEKEKVAASKDGATQTR
Ga0314788_110861_429_629	3300034666	Soil	MNVKTLRGLAAALGFASLATSAIAENLGEHPAVIVARTWTTQGIDPNTFIVLHPAAPKLLAVSPTEE
Ga0314796_055438_260_496	3300034671	Soil	MNVKTLQRLGAALVFASVAGSALAQSLGEHPAVVVAREWSTRGIDPNSFIVLPPAATQFLAAAPAEKDKVVASKHAAQ
Ga0364923_0090477_87_338	3300034690	Sediment	MNIKTLRPLAAAALVVASLAQPAIAETLGEHPAVIVARTWNSRGIDPNTFIVLHPASPRFLAASPTEEDTRPPASKHSGQRTP
Ga0373958_0024730_16_261	3300034819	Rhizosphere Soil	MNVKTLWRLVAALVFGSLATSAIAEGLGEHPAVIVARAWNTRGIDPNTFIVLHPAAPRFLAGSEADEGGVAPSARVAVRAQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065181

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences