Metagenome / Metatranscriptome Family F065162

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065162
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	62 residues
Representative Sequence	MPPNDDCPDDDSFEQALREYREQTWDPAEFADLPTNVQCDIVERACLIQAADDRLNELIQAA
Number of Associated Samples	77
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.34 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	71.09 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.781 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (46.094 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.188 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.22% β-sheet: 0.00% Coil/Unstructured: 47.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00072	Response_reg	4.69
PF01406	tRNA-synt_1e	2.34
PF00589	Phage_integrase	2.34
PF12728	HTH_17	0.78
PF13490	zf-HC2	0.78
PF08308	PEGA	0.78
PF02405	MlaE	0.78
PF01590	GAF	0.78
PF08867	FRG	0.78
PF05988	DUF899	0.78
PF00482	T2SSF	0.78
PF14534	DUF4440	0.78
PF02518	HATPase_c	0.78
PF12704	MacB_PCD	0.78
PF08240	ADH_N	0.78
PF10009	DUF2252	0.78
PF13419	HAD_2	0.78
PF00011	HSP20	0.78
PF13620	CarboxypepD_reg	0.78
PF13493	DUF4118	0.78
PF13103	TonB_2	0.78
PF04055	Radical_SAM	0.78
PF01364	Peptidase_C25	0.78
PF13426	PAS_9	0.78
PF13548	DUF4126	0.78
PF00196	GerE	0.78
PF05193	Peptidase_M16_C	0.78
PF01225	Mur_ligase	0.78
PF12228	DUF3604	0.78
PF01434	Peptidase_M41	0.78
PF09579	Spore_YtfJ	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.34
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.34
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.34
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0769	UDP-N-acetylmuramyl tripeptide synthase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0770	UDP-N-acetylmuramyl pentapeptide synthase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG0773	UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family	Cell wall/membrane/envelope biogenesis [M]	0.78
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
All Organisms	root	All Organisms	49.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
cellular organisms	root	All Organisms → cellular organisms	49.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.50 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.69 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.91 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.91 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.78 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.78 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
Granulicella tundricola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola	0.78 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.78 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.50 %
Granulicella tundricola MP5ACTX9	strain	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola → Granulicella tundricola MP5ACTX9	0.78 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	0.78 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101570139	All Organisms → cellular organisms → Bacteria → Acidobacteria	2735	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104184128	Not Available	583	Open in IMG/M
3300000559\|F14TC_101313667	Not Available	518	Open in IMG/M
3300005332\|Ga0066388_100004037	All Organisms → cellular organisms → Bacteria	9768	Open in IMG/M
3300005332\|Ga0066388_100005422	All Organisms → cellular organisms → Bacteria → Acidobacteria	8891	Open in IMG/M
3300005332\|Ga0066388_100085416	All Organisms → cellular organisms → Bacteria → Acidobacteria	3552	Open in IMG/M
3300005332\|Ga0066388_100632636	All Organisms → cellular organisms → Bacteria → Acidobacteria	1688	Open in IMG/M
3300005332\|Ga0066388_101459292	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300005434\|Ga0070709_10030845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3220	Open in IMG/M
3300005434\|Ga0070709_10746282	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300005435\|Ga0070714_101490063	Not Available	661	Open in IMG/M
3300005435\|Ga0070714_101514424	Not Available	655	Open in IMG/M
3300005526\|Ga0073909_10693497	Not Available	510	Open in IMG/M
3300005542\|Ga0070732_10190745	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300005542\|Ga0070732_10313926	Not Available	942	Open in IMG/M
3300006041\|Ga0075023_100609973	Not Available	509	Open in IMG/M
3300006050\|Ga0075028_100427862	Not Available	762	Open in IMG/M
3300006052\|Ga0075029_100741024	Not Available	665	Open in IMG/M
3300006057\|Ga0075026_101057935	Not Available	508	Open in IMG/M
3300006059\|Ga0075017_100349716	Not Available	1100	Open in IMG/M
3300006163\|Ga0070715_10507426	Not Available	691	Open in IMG/M
3300006174\|Ga0075014_100230275	All Organisms → cellular organisms → Bacteria → Acidobacteria	948	Open in IMG/M
3300006804\|Ga0079221_10172277	Not Available	1157	Open in IMG/M
3300006852\|Ga0075433_10070169	All Organisms → cellular organisms → Bacteria → Acidobacteria	3079	Open in IMG/M
3300006852\|Ga0075433_10408129	Not Available	1198	Open in IMG/M
3300006854\|Ga0075425_100091002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	3459	Open in IMG/M
3300006854\|Ga0075425_100782803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1094	Open in IMG/M
3300006904\|Ga0075424_102154381	Not Available	587	Open in IMG/M
3300007076\|Ga0075435_101389684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300009162\|Ga0075423_10091940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3170	Open in IMG/M
3300009792\|Ga0126374_10047609	All Organisms → cellular organisms → Bacteria → Acidobacteria	2151	Open in IMG/M
3300010043\|Ga0126380_10003327	All Organisms → cellular organisms → Bacteria → Acidobacteria	6518	Open in IMG/M
3300010043\|Ga0126380_10004356	All Organisms → cellular organisms → Bacteria	5880	Open in IMG/M
3300010043\|Ga0126380_10005858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5237	Open in IMG/M
3300010046\|Ga0126384_10186613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1630	Open in IMG/M
3300010047\|Ga0126382_11811291	Not Available	574	Open in IMG/M
3300010048\|Ga0126373_10702750	Not Available	1069	Open in IMG/M
3300010154\|Ga0127503_10683116	Not Available	623	Open in IMG/M
3300010154\|Ga0127503_10823159	Not Available	612	Open in IMG/M
3300010359\|Ga0126376_12088091	Not Available	610	Open in IMG/M
3300010361\|Ga0126378_10980496	Not Available	949	Open in IMG/M
3300010362\|Ga0126377_11680943	Not Available	710	Open in IMG/M
3300010366\|Ga0126379_12508038	Not Available	614	Open in IMG/M
3300010366\|Ga0126379_13027436	Not Available	562	Open in IMG/M
3300010376\|Ga0126381_104256026	Not Available	555	Open in IMG/M
3300010398\|Ga0126383_10560291	Not Available	1209	Open in IMG/M
3300012200\|Ga0137382_10151248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1573	Open in IMG/M
3300012202\|Ga0137363_10002056	All Organisms → cellular organisms → Bacteria	11827	Open in IMG/M
3300012203\|Ga0137399_11249484	Not Available	625	Open in IMG/M
3300012205\|Ga0137362_10038413	Not Available	3842	Open in IMG/M
3300012205\|Ga0137362_10290578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1415	Open in IMG/M
3300012685\|Ga0137397_10178389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1577	Open in IMG/M
3300012685\|Ga0137397_10222086	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1406	Open in IMG/M
3300012918\|Ga0137396_10588193	Not Available	823	Open in IMG/M
3300012930\|Ga0137407_12130301	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300012948\|Ga0126375_10232044	Not Available	1236	Open in IMG/M
3300012948\|Ga0126375_11037813	Not Available	670	Open in IMG/M
3300015371\|Ga0132258_10034099	All Organisms → cellular organisms → Bacteria	11423	Open in IMG/M
3300015371\|Ga0132258_10043271	All Organisms → cellular organisms → Bacteria → Proteobacteria	10251	Open in IMG/M
3300015371\|Ga0132258_11020336	All Organisms → cellular organisms → Bacteria	2091	Open in IMG/M
3300015371\|Ga0132258_11487435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1710	Open in IMG/M
3300015371\|Ga0132258_11702289	All Organisms → cellular organisms → Bacteria → Acidobacteria	1591	Open in IMG/M
3300015372\|Ga0132256_100040794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4263	Open in IMG/M
3300015374\|Ga0132255_104171794	Not Available	613	Open in IMG/M
3300016357\|Ga0182032_11349588	Not Available	616	Open in IMG/M
3300016422\|Ga0182039_11730526	Not Available	572	Open in IMG/M
3300017930\|Ga0187825_10059286	Not Available	1300	Open in IMG/M
3300017932\|Ga0187814_10178993	Not Available	794	Open in IMG/M
3300020170\|Ga0179594_10110617	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300020199\|Ga0179592_10424677	Not Available	577	Open in IMG/M
3300020579\|Ga0210407_10072884	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella tundricola → Granulicella tundricola MP5ACTX9	2581	Open in IMG/M
3300020579\|Ga0210407_10186969	All Organisms → cellular organisms → Bacteria	1607	Open in IMG/M
3300020581\|Ga0210399_10441491	Not Available	1084	Open in IMG/M
3300020583\|Ga0210401_10003622	All Organisms → cellular organisms → Bacteria	16411	Open in IMG/M
3300020583\|Ga0210401_10454412	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300021088\|Ga0210404_10055187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1884	Open in IMG/M
3300021088\|Ga0210404_10315080	Not Available	863	Open in IMG/M
3300021171\|Ga0210405_11245429	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300021178\|Ga0210408_10000235	All Organisms → cellular organisms → Bacteria	78003	Open in IMG/M
3300021180\|Ga0210396_10062566	Not Available	3394	Open in IMG/M
3300021432\|Ga0210384_10473755	Not Available	1127	Open in IMG/M
3300021478\|Ga0210402_10674569	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300021559\|Ga0210409_10010528	All Organisms → cellular organisms → Bacteria	9311	Open in IMG/M
3300021559\|Ga0210409_10242829	Not Available	1632	Open in IMG/M
3300021559\|Ga0210409_10338468	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300021560\|Ga0126371_10032775	All Organisms → cellular organisms → Bacteria → Acidobacteria	4876	Open in IMG/M
3300021560\|Ga0126371_10849652	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300022531\|Ga0242660_1189467	Not Available	560	Open in IMG/M
3300025898\|Ga0207692_10023740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2841	Open in IMG/M
3300025898\|Ga0207692_10173920	All Organisms → cellular organisms → Bacteria → Acidobacteria	1250	Open in IMG/M
3300027910\|Ga0209583_10092287	Not Available	1152	Open in IMG/M
3300027911\|Ga0209698_10035387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4522	Open in IMG/M
3300031718\|Ga0307474_10911870	Not Available	695	Open in IMG/M
3300031720\|Ga0307469_10009551	All Organisms → cellular organisms → Bacteria	4656	Open in IMG/M
3300031720\|Ga0307469_10322617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1283	Open in IMG/M
3300031720\|Ga0307469_12248914	Not Available	531	Open in IMG/M
3300031740\|Ga0307468_100228888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1286	Open in IMG/M
3300031740\|Ga0307468_101131236	Not Available	700	Open in IMG/M
3300031753\|Ga0307477_10260140	Not Available	1202	Open in IMG/M
3300031753\|Ga0307477_10824814	Not Available	615	Open in IMG/M
3300031753\|Ga0307477_10881978	Not Available	591	Open in IMG/M
3300031754\|Ga0307475_10036034	All Organisms → cellular organisms → Bacteria	3634	Open in IMG/M
3300031754\|Ga0307475_10257274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1399	Open in IMG/M
3300031754\|Ga0307475_10290885	Not Available	1311	Open in IMG/M
3300031754\|Ga0307475_10764010	Not Available	768	Open in IMG/M
3300031820\|Ga0307473_10978968	Not Available	616	Open in IMG/M
3300031879\|Ga0306919_11366865	Not Available	535	Open in IMG/M
3300031962\|Ga0307479_10002209	All Organisms → cellular organisms → Bacteria → Acidobacteria	17677	Open in IMG/M
3300031962\|Ga0307479_10003330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14639	Open in IMG/M
3300031962\|Ga0307479_10178809	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300031962\|Ga0307479_10185217	Not Available	2048	Open in IMG/M
3300031962\|Ga0307479_10610751	Not Available	1072	Open in IMG/M
3300031962\|Ga0307479_10759532	Not Available	946	Open in IMG/M
3300031962\|Ga0307479_10839495	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300031962\|Ga0307479_11507820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300032001\|Ga0306922_10932358	Not Available	900	Open in IMG/M
3300032001\|Ga0306922_11809555	Not Available	601	Open in IMG/M
3300032174\|Ga0307470_11149081	Not Available	627	Open in IMG/M
3300032174\|Ga0307470_11369953	Not Available	582	Open in IMG/M
3300032180\|Ga0307471_100000445	All Organisms → cellular organisms → Bacteria	21072	Open in IMG/M
3300032180\|Ga0307471_100029337	All Organisms → cellular organisms → Bacteria	4206	Open in IMG/M
3300032180\|Ga0307471_100050550	All Organisms → cellular organisms → Bacteria	3426	Open in IMG/M
3300032180\|Ga0307471_100140729	Not Available	2298	Open in IMG/M
3300032180\|Ga0307471_101973908	Not Available	731	Open in IMG/M
3300032180\|Ga0307471_102131535	Not Available	705	Open in IMG/M
3300032205\|Ga0307472_100293403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300032205\|Ga0307472_102702655	Not Available	507	Open in IMG/M
3300032261\|Ga0306920_100097755	All Organisms → cellular organisms → Bacteria	4345	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.06%
Host-Associated	Host-Associated	10.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.69%
Plants	Host-Associated → Plants	10.94%
Aquatic	Environmental → Aquatic	9.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.69%
Sediment	Environmental → Aquatic → Sediment	6.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.69%
Freshwater	Environmental → Aquatic → Freshwater	3.12%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.53%
Loam	Environmental → Terrestrial → Soil → Loam	10.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.56%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	25.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.59%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.34%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.56%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1015701393	3300000364	Soil	VVLIRTSWVCPFRQARLSGLSWQEKNIMPPNDECPTNDSFERALREYREQTWDSAEFADLPTDVQCDIVERACRIQAANDRLKDLMAA*
INPhiseqgaiiFebDRAFT_1041841281	3300000364	Soil	MSPNDVYPDDDSFEQALCEYREKTWDPAEFADLPTNVQCDIVDRACLIRAANDRLNESLAA*
F14TC_1013136671	3300000559	Soil	MTLNDDCPDDDSFNLAFREYREQTSDLADFADLPADVQCDIVERACRIKSAYDLLKGDVAA*
Ga0066388_1000040378	3300005332	Tropical Forest Soil	MPPNDDYPDDDAFDQALNEYHEQTWDPADFADLPTDVQCNIVERACQIRVANDRLRELRAA*
Ga0066388_1000054222	3300005332	Tropical Forest Soil	MTPDDDAFKRALSEYREQTWDSTDFADLPTDVQSDIVARACRIQVADERLKELLAA*
Ga0066388_1000854162	3300005332	Tropical Forest Soil	MPPNDECPTNDSFEQALREYREQTWDSSEFADMPTDVQCDIVERACRIQATNDRLKELMAA*
Ga0066388_1006326362	3300005332	Tropical Forest Soil	VVTERTSWGAPRFVRAQLLSGLSQQENTMPTNDECPNNDSFERALREYREQTWDSAEFADMPTDVQCDIVERACRIQAANDRLKELMAA*
Ga0066388_1014592921	3300005332	Tropical Forest Soil	MYTIDDSPDADSFERALSEYRESTWCPDDFADLPTEVQCDILERAWQIQAATERLAEAA*
Ga0070709_100308452	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPPNDDCPNDDSFEQALSEYRERSWCPDEFADLSTDVQFDIIERACQIQAANDRLNELIQAA*
Ga0070709_107462821	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPPNDDCPDDDSFEQALREYREQTWDPAEFADLPTNVQCDIVERACLIQAADDRLNELIQAA*
Ga0070714_1014900632	3300005435	Agricultural Soil	MPPNDDCLEDDSFERALWEYREKTWNPAEFADLPTNVQRDIVERACQIQAANDRLNELIQAA*
Ga0070714_1015144241	3300005435	Agricultural Soil	MSPNDVCPDSFEQALREYREQTWDPAEFADLPTSVQCDIVERAALIQAANDRLSELLAA*
Ga0073909_106934972	3300005526	Surface Soil	MPPNDDCPNDNSFEQALSEYRERSWCPDEFADLSTDVQCDIIERACQIQAANDRLNELIQAA*
Ga0070732_101907452	3300005542	Surface Soil	MSPNDVCPDSFEQALREYREQTWDPAEFADLPTSVRCDIVERAALIQAANDRLSELLAA*
Ga0070732_103139263	3300005542	Surface Soil	MPPNDDCLEDDSFERALWEYREKTWNPAEFADLPTNVQRDIVERACQIQAANDRLDELIQAA*
Ga0075023_1006099731	3300006041	Watersheds	MPPNDDCPNDSSLERALCEYRERSWCPDEFADLSTDVQCDIIERACQIQAAHYRLNELIQAA*
Ga0075028_1004278622	3300006050	Watersheds	MPPNDDCPNDSSLERALCEYRERSWCPDEFADLSTDVQCDIIERACQIEAANDRLDELIQAA*
Ga0075029_1007410242	3300006052	Watersheds	MPPNDDYPDDHSFERALCEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQAA*
Ga0075026_1010579351	3300006057	Watersheds	MPPNDDCPNDGSIERALCEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRLDELIQAA*
Ga0075017_1003497161	3300006059	Watersheds	MPPNDDYPDDHSFERALCEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRFNDLRPAA*
Ga0070715_105074261	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	PDSLSHAGENNIMPPNDDCPNDDSFEQALSEYRERSWCPDEFADLSTDVQFDIIERACQIQAANDRLNELIQAA*
Ga0075014_1002302752	3300006174	Watersheds	MSPNDVRPDDVSFERALREYREETWDPAEFADLPTDVQCDIVQRASRIQAADDRLKELRAA*
Ga0079221_101722772	3300006804	Agricultural Soil	MPPNDVYPDDDSFEQALREYREQTWDPAEFADLPTEVQCDIVERANRIQAASDRLNEILAA*
Ga0075433_100701693	3300006852	Populus Rhizosphere	MPPNDECPTNESFERALREYREQTWDSAEFADLPTDVQCDIVERACRIQAANDRLKDLMAA*
Ga0075433_104081292	3300006852	Populus Rhizosphere	MPPNDDCPDVDSFEQALREYREQTWDPAEFADLPTNVQCDIVERACLIQAADDRLNELIQAA*
Ga0075425_1000910022	3300006854	Populus Rhizosphere	MPPNDGCPTDDSFERALREYREQTWDSADFADLPTDVQCDIVETACRIQAANDRLKDLMAA*
Ga0075425_1007828031	3300006854	Populus Rhizosphere	MPPNDECPTNDSFERALREYREQTWDSAEFADLPTDVQCDIVERACRIQAANDRLKDLMA
Ga0075424_1021543811	3300006904	Populus Rhizosphere	MPPNDECPNDDSFEQALREYREQTWDSAEFADLPTDVQCDIVEKACRIQATSDRLKELLAA*
Ga0075435_1013896841	3300007076	Populus Rhizosphere	MSPNDVSPDDDSFERALREYREQTWDSAEFADLPTDVQCDIVERASRIQAANDRLNELLAA*
Ga0075423_100919404	3300009162	Populus Rhizosphere	LSGLSWQEKNIMPPNDECPTNESFERALREYREQTWDSAEFADLPTDVQCDIVERACRIQAAND
Ga0126374_100476092	3300009792	Tropical Forest Soil	LSGLSYEEKNVMPPNDECPTNDSFEQALREYREQTWDSSEFADMPTDVQCDIVERACRIQATNDRLKELMAA*
Ga0126380_100033273	3300010043	Tropical Forest Soil	VGCATFVRAQLLSGLSQQENTMPTNDECPNNDSFERALREYREQTWDSSEFADMPTDVQCDIVERACRIQAANDRLKELMAA*
Ga0126380_100043565	3300010043	Tropical Forest Soil	MSPNDDCPDNESFMRALGEYREQTWDTADFADLPTDVQCDIVERACRIQSANDRLREYLAA*
Ga0126380_100058589	3300010043	Tropical Forest Soil	MTPNDNCPDDDSFNLALREYRQQASDPADFADLPTDVQCDIVERACRIKSANDRLQGDVAA*
Ga0126384_101866132	3300010046	Tropical Forest Soil	MSPIDDSPDADSFERALSEYRESTWCPDDFADLPTEVQCDILERAWQIQAATERLAEAA*
Ga0126382_118112912	3300010047	Tropical Forest Soil	LGASRFRQAKSLSGLPQQEKNIMPPNDECPTNDSFEQALHEYREQTWDSAEFADLPTDVQCDIVE
Ga0126373_107027501	3300010048	Tropical Forest Soil	MTPDACFEQALREYRESSWCPDDFADLPTEVQHNIVERACQIQAADERLKELMPAA*
Ga0127503_106831161	3300010154	Soil	MSPNDDCPNDDSFERALSEYRERSWCSDDFADLPTDVQCDIVERACRIQMANNRLQELLAA*
Ga0127503_108231591	3300010154	Soil	MPPNDDCPDDDSFEQALREYRERSWCPDEFADLSTDVQCDIIERACQIQAANDRLNELIQAA*
Ga0126376_120880911	3300010359	Tropical Forest Soil	DECPNNDSFERALREYREQTWDSSEFADMPTDVQCDIVERACRIQAANDRLKELMAA*
Ga0126378_109804962	3300010361	Tropical Forest Soil	MPPNDECPTDDSFERALREYREQTWDSAEFAELPTDVQCNIVERACRIQAASDRLEDLMVA*
Ga0126377_116809432	3300010362	Tropical Forest Soil	TNDECPNNDSFERALREYREQTWDSSEFADMPTDVQCDIVERACRIQAANDRLKELMAA*
Ga0126379_125080381	3300010366	Tropical Forest Soil	MSPNDDCFERALSEYREQTWDPAEFADLPTEVQREILERACRIQAADERLQEVRAAA*
Ga0126379_130274361	3300010366	Tropical Forest Soil	DDAFKRALSEYREQTWDSTDFADLPTDVQSDIVARACRIQVADERLKELLAA*
Ga0126381_1042560261	3300010376	Tropical Forest Soil	VFPRDDYPSNDSLEQALGEYRERSWCPDDFAELPIDVRRDILERARQIQAANDRLNDL
Ga0126383_105602913	3300010398	Tropical Forest Soil	MTPNDDSFEQALNEYREQTWDPADFADLPTDVQSDIVARACRIQAANDRLKELLAA*
Ga0137382_101512483	3300012200	Vadose Zone Soil	MQEKNVMSPNDVCPDNDSFEQAFREYREQTWDPAEFADLPTNVQCDIVERACRIEAANDRLKELLAA*
Ga0137363_100020564	3300012202	Vadose Zone Soil	MPPNDVCPDDDSFERALCEYREQTWDPAEFADLPTSVQCDIVERACRIQSANDRLRELLAA*
Ga0137399_112494841	3300012203	Vadose Zone Soil	MPPSDHCPDDSCFERAFHEYREQTWDPADFADLPTDVQCDIVERARQIQAASDRLKELIQAA*
Ga0137362_100384138	3300012205	Vadose Zone Soil	VCPDNDSFEQAFREYREQTWDPAEFADLPTNVQCDIVERACRIEAANDRLKELLAA*
Ga0137362_102905783	3300012205	Vadose Zone Soil	MQEKNVMSPNDVCPDNDSFEQAFREYREQTWDPAEFADLTTNVQCDILERACRIEAANDRLKE
Ga0137397_101783892	3300012685	Vadose Zone Soil	MQEKNVMSPTDVCPDNDSFEQAFREYREQTWDPAEFADLPTNVQCDIVERACRIEAANDRLKELLAA*
Ga0137397_102220861	3300012685	Vadose Zone Soil	MPPNDDCPDNDSFERALCEYREESWCPYDFADLPTDVQCDIIERACQIQAANDRLNELLPAA*
Ga0137396_105881932	3300012918	Vadose Zone Soil	MQEKNVMSPNDVCPDNDSFEQAFREYREQTWDPAEFADLPTNVQCDIVERACRIEAANDRLKELLDA*
Ga0137407_121303011	3300012930	Vadose Zone Soil	PNDVCPDNASFEQAFREYREQTWDPAEFADLPTNVQCDIVERACRIEAANDRLKELLAA*
Ga0126375_102320442	3300012948	Tropical Forest Soil	MTPNDNCPDDDSFNLALREYRQQASDPADFADLPTDVQCDIVERACRIKSVNDRLQGNVAA*
Ga0126375_110378132	3300012948	Tropical Forest Soil	MSPNDGCPDNDSFMQAFSEYREQTSDTTEFADLPPDVQCDIVERACRIQSVNDRRRAYFAA*
Ga0132258_100340993	3300015371	Arabidopsis Rhizosphere	LSGLSWQEKNIMPPNDECPTNDSFERALREYREQTWDSAEFADLPTDVQCDIVERACRIQAANDRLKDLMAA*
Ga0132258_100432716	3300015371	Arabidopsis Rhizosphere	LGAPRGFVRPNRCLALRHQEKKIMPPNDECPNDDSFEQALREYREQTWDSAEFADLPTDVQCDIVEKACRIQATSDRLKELLAA*
Ga0132258_110203362	3300015371	Arabidopsis Rhizosphere	MTPNDDCPDDDSFNLALREYREQTSDVADFADLPTDVQCDIVERACRIKSANDRLQGDVAA*
Ga0132258_114874352	3300015371	Arabidopsis Rhizosphere	DDCPDDDSFNLALREYREQTSDVADFADLPTDVQGDIVERACRIKSVNDRLQGDVAA*
Ga0132258_117022891	3300015371	Arabidopsis Rhizosphere	MPPNDVYPDDDSFEQALREYHEQTWDPAEFADLPTNVQSDIVERACQIQAANDRLNESLAA*
Ga0132256_1000407948	3300015372	Arabidopsis Rhizosphere	VVWPSPAGENIMPPNDECPTNDSFERALREYREQTWDSAEFADLPTDVQCDIVERACRIQAANDRLKDLMAA*
Ga0132255_1041717942	3300015374	Arabidopsis Rhizosphere	PNDECPNDDSFEQALREYREQTWDSAEFADLPTDVQCDIVEKACRIQATSDRLKELLAA*
Ga0182032_113495881	3300016357	Soil	MPPNDACPDDDSFERALSEYRERSWCPDDFADLPTNVQRHIIERACEIQAANDRLREFMA
Ga0182039_117305261	3300016422	Soil	NVMPPNDACPDDGSFERALSEYRERSWCPDDFADLPTNVQRHIIERACEIQAANDRLREFLAA
Ga0187825_100592863	3300017930	Freshwater Sediment	MPPNDGFPNTDSFERALSQYREQTWDPADFADLPTDVQREIVERACLIHAADERLKEAA
Ga0187814_101789932	3300017932	Freshwater Sediment	MTPDESFEQALREYRERSWCPDEFADLPTDVRGGIVERACQIQAANDRQKELMRAA
Ga0179594_101106171	3300020170	Vadose Zone Soil	MPPSDHCPDDSCFERAFHEYREQTWDPADFADLPTDVQCDIVERARQIQAASDRLKELIQAA
Ga0179592_104246771	3300020199	Vadose Zone Soil	MSPNDVCPDNDSFEQAFREYREQTWDPAEFADLPTNVQCDIVERACRIEAANDRLKELLA
Ga0210407_100728844	3300020579	Soil	MPPNDDCPDDYSFEQALREYREQTWDPAEFADLPTNVQCDIVERACLIQAADGRLNELIQAA
Ga0210407_101869692	3300020579	Soil	MPPNDEYPDDHSFERALCEYRERTWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQAA
Ga0210399_104414911	3300020581	Soil	MPPNDDYPDDDSFERALDEYRERSWCPDDFADLPTAVQCDIIERAYRIQAANDRLNELRPAA
Ga0210401_1000362217	3300020583	Soil	MPPNDDCLEDDSFERALWEYREKTWNPAEFADLPTNVQRDIVERACQIQAANDRLDELIQAA
Ga0210401_104544121	3300020583	Soil	MPPNDDYPDDDSFERALDEYRESSWCPDDFADLPTEVQCDIIERASRIQAANDRLNELRPAA
Ga0210404_100551876	3300021088	Soil	DSCFERAFHEYREQTWDPTDFADLPTDVQCDIIERACQIQAADDRLNELIQAA
Ga0210404_103150802	3300021088	Soil	MPPNDVCLDDDSFEQALREYREQTWDPAEFADLPTSVQCDIVERASLIQAANDRLSELLA
Ga0210405_112454291	3300021171	Soil	MPPNDEYPDDHSFERALCEYRERTWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQ
Ga0210408_1000023515	3300021178	Soil	MPPNDEYPDDHSFERALCEYRERTWCPDDFADLATDVQCDIIERACQIQAANDRLNELIQAA
Ga0210396_100625665	3300021180	Soil	MPPNDDYPDDDSFERALEEYRERSWCPDDFADLPTEVQSEIIERAFRIQAANDRFNDLRLAA
Ga0210384_104737552	3300021432	Soil	MPPNDDCLEDDSFERALWEYREKTWNPAEFADLPTNVQRDIVERACQIQAANDRLNELIQAA
Ga0210402_106745691	3300021478	Soil	SFEQALREYREQTWDPAEFADLPTNVQCDIVERACLIQAADGRLNELIQAA
Ga0210409_100105289	3300021559	Soil	MPPNDDYPDDDSFERALEEYRERSWCPDDFADLPTEVQSEIIERACRIQAANDRFNDLRLAA
Ga0210409_102428293	3300021559	Soil	MPPNDVCLDDDSFEQALREYREQTWDPAEFADLPTNVQCDIVERASLIQAANDRLSELLA
Ga0210409_103384682	3300021559	Soil	MSPNDDCPDDDSFEQALCEYREQTWDPAEFADLPTDVQCDIVQRACRIQAASDRLKELLA
Ga0126371_100327751	3300021560	Tropical Forest Soil	MTPDDDAFKRALSEYREQTWDSTDFADLPTDVQSDIVARACRIQVADERLKELLAA
Ga0126371_108496521	3300021560	Tropical Forest Soil	MSPNDDCFERALSEYREQTWDPAEFADLPTEVQREILERACRIQAADERLQEVRAAA
Ga0242660_11894671	3300022531	Soil	MPPNDDCPNDSCFERALCEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQAA
Ga0207692_100237405	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PDSLSHAGENNIMPPNDDCPNDDSFEQALSEYRERSWCPDEFADLSTDVQFDIIERACQIQAANDRLNELIQAA
Ga0207692_101739201	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	SCRRNVMPPNDDCPDDDSFEQALREYREQTWDPAEFADLPTNVQCDIVERACLIQAADDRLNELIQAA
Ga0209583_100922873	3300027910	Watersheds	MPPNDDCPNDSSLERALCEYRERSWCPDEFADLSTDVQCDIIERACQIQAAHYRLNELIQAA
Ga0209698_100353872	3300027911	Watersheds	MPPNDDYPDDHSFERALCEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQAA
Ga0307474_109118702	3300031718	Hardwood Forest Soil	MPPSDDYPDDNSFERALDEYRERSWCPDDFADLPTEVQTEIIERACQIQAANDRFNDLRLAA
Ga0307469_100095513	3300031720	Hardwood Forest Soil	MPPNDVYLDNDSFEQALRDYREQTWDPAEFADLPTNVQYDIVERACQIQAANDRLNESLA
Ga0307469_103226171	3300031720	Hardwood Forest Soil	MPPNDECPNDDSFEKALREYREETWDSVEFADLPTDVQCDIVEKACRIQAADDRLRELMA
Ga0307469_122489141	3300031720	Hardwood Forest Soil	MPPNDDYPDDDSFEQAVREYHEETWDSAEFADLPTNVQCEIVERACMIQAANDRLKAA
Ga0307468_1002288882	3300031740	Hardwood Forest Soil	MPPNDVYLDDDSFEQALREYHEQTWDPAEFGDLPTNVQSDIVERACQIQAANDRLNESLA
Ga0307468_1011312361	3300031740	Hardwood Forest Soil	MSPNDDCPNDDSFERALSEYRERSWCSDDFADLPTDVQCDIVERACRIQMANNRLQELLA
Ga0307477_102601402	3300031753	Hardwood Forest Soil	MPPHDVYPDADSFEQALREYREQTWDPAEFADLPTNLQCDIAERASLIRAANDRLSELLA
Ga0307477_108248142	3300031753	Hardwood Forest Soil	MPPNDDCPNDSDLERALCEYRERSWCSDDFADLPTDVQCDIIERACEIQAADDRLNEWIQAA
Ga0307477_108819782	3300031753	Hardwood Forest Soil	MPPNDDCPNDSFLERALCEYQERSWCSDDFADLPTDVQRDIIERACEIQAADDRLNELIQAA
Ga0307475_100360343	3300031754	Hardwood Forest Soil	MPPNDVYPDDDFFEQALREYREQTWDPAEFADLPTEVQCDIVERASRIQAASDRLNERLA
Ga0307475_102572742	3300031754	Hardwood Forest Soil	MPPNDVCLDDDSFEQALREYREQTWDPAEFADLPTNLQCDIVERASMIQAANDRLNELLA
Ga0307475_102908853	3300031754	Hardwood Forest Soil	MPPNDDRPNDNSLEQALSEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQAA
Ga0307475_107640101	3300031754	Hardwood Forest Soil	DDCPNDSFLDRALSEYRERSWCSDDFADLPTDVQCDIIERACEIQAADGRLNEWIQAA
Ga0307473_109789681	3300031820	Hardwood Forest Soil	MPPNDVCTDSFEQALREYREQTWDPAEFADLPTNLQCDIVERASLIRAANDRLSELLAA
Ga0306919_113668651	3300031879	Soil	MPPNDACPDDGSFERALSEYRERSWCPDDFADLPTNVQRHIIERACEIQAANDRLREFLA
Ga0307479_1000220911	3300031962	Hardwood Forest Soil	MPPNDDYPDDHSFERALCEYRERSWCPDDFADLPTDVQCDIIERACEIQAADDRLSELIQAA
Ga0307479_100033305	3300031962	Hardwood Forest Soil	MPPNDDCPNDNSLEQALCEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQAA
Ga0307479_101788091	3300031962	Hardwood Forest Soil	MPPNDDCPNDSFLERALCEYRERSWCSDDFADLPTDVQRDIIERACEIQAADGRLNEWVQAA
Ga0307479_101852174	3300031962	Hardwood Forest Soil	MPPNDDRPNDNSLEQALSEYRERSWCPDDFADLPTDVQCDIIERACQIQAANDRLNELIQ
Ga0307479_106107513	3300031962	Hardwood Forest Soil	MPPNDDYPTDRSLDRALCEYRERSWCSDDFADLPTEVQCDIIERACQIQAATDRLNELIQAA
Ga0307479_107595322	3300031962	Hardwood Forest Soil	MQEKTSCPPSDVCPDNDSFERALCEYREQTWDPTEFAELPTDVQCDIIERACRIQAANDRLKELLAA
Ga0307479_108394951	3300031962	Hardwood Forest Soil	MPPNDVRSNDDSFERALGEYREQTWDPAEFADLPTAVQSDIVQRACRIEAANARLKELLA
Ga0307479_115078202	3300031962	Hardwood Forest Soil	MPPNDVCPDSFEQALREYREQTWDPAEFADLPTNVQCDIVERASLIRAANDRLSELLAA
Ga0306922_109323581	3300032001	Soil	MPPNDACPDDDSFERALSEYRERSWCPDDFAELPTNVQRHIIERACEIQAA
Ga0306922_118095552	3300032001	Soil	DDDSFERALSEYRERSWCPDDFAELPTNVQRHIIERACEIQAANDRLREFMAA
Ga0307470_111490813	3300032174	Hardwood Forest Soil	NIMPPNDDCPDDDSFEQALYEYRERSWCPDEFAELPTEVQRGIMERAIQIQEAEERMIQA
Ga0307470_113699531	3300032174	Hardwood Forest Soil	SFERALDEYRERSWCPDDFADLPTEVQCDIIERASRIQAANDRLNELRPAA
Ga0307471_10000044524	3300032180	Hardwood Forest Soil	MPPNDECPTDDSFERALREYREQTWDAAEFADLPTDVQCDIVERACRIQAANDRLKDLMA
Ga0307471_1000293374	3300032180	Hardwood Forest Soil	MPPSDDCPTDSSLERALCEYRERSWCPDQFADLPTDVQCDIIERACQIQAANDRLNEWVQAA
Ga0307471_1000505503	3300032180	Hardwood Forest Soil	MPPNDDYPDDHSFERALCEYRERSWCPDDFADLPTDVQCDIIKRACQIQAANDRLNELIQAA
Ga0307471_1001407291	3300032180	Hardwood Forest Soil	PFLMQEKNIMPPNDVCPDADSFEQALCEYREQTWDPAEFADLPTNVQCDIIERACRIRAASDRLKEVLAA
Ga0307471_1019739082	3300032180	Hardwood Forest Soil	MSPNDVCPDDDSFARALHEYPEQTWDSAEFADLPTDVQCDIVERACRIQAANDRLKELLA
Ga0307471_1021315351	3300032180	Hardwood Forest Soil	ALKAFPQAGENVMPPNDVYLDDDSFEQALREYHEQTWDPAEFGDLPTNVQSDIVERACQIQAANDRLNESLAA
Ga0307472_1002934033	3300032205	Hardwood Forest Soil	MPPNDDCPDNDSFERALCEYREESWCPYDFADLPTDVQCDIIERACQIQAANDRLNELLPAA
Ga0307472_1027026552	3300032205	Hardwood Forest Soil	NDDCPDDDSFEQALREYREQTWDPAEFADLPTNVQCDIVERACLIQAADDRLNELIQAA
Ga0306920_1000977553	3300032261	Soil	MPPNDACPDDDSFERALSEYRERSWCPDDFAELPTNVQRHIIERACEIQAANDRLREFMA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065162

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences