Basic Information | |
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Family ID | F064906 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 128 |
Average Sequence Length | 42 residues |
Representative Sequence | YTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Number of Associated Samples | 111 |
Number of Associated Scaffolds | 128 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 3.91 % |
% of genes near scaffold ends (potentially truncated) | 96.09 % |
% of genes from short scaffolds (< 2000 bps) | 90.62 % |
Associated GOLD sequencing projects | 105 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.48 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (89.844 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.906 % of family members) |
Environment Ontology (ENVO) | Unclassified (30.469 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (39.062 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 32.86% β-sheet: 0.00% Coil/Unstructured: 67.14% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.48 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Watersheds Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Compost Bulk Soil Surface Soil Agricultural Soil Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Tropical Peatland Soil Soil Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Soil Palsa Plant Litter Biofilm Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Ectomycorrhiza Switchgrass Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Compost Ionic Liquid And High Solid Enriched |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0006572J49612_11602752 | 3300003331 | Ionic Liquid And High Solid Enriched | RELIELGYRDAMEARDELLAFMSGEKVPPAIATPTVAETSEAT* |
Ga0070923_18376581 | 3300005072 | Compost | YTRELIELGYRDAMEARDELLAFMSGEKVPPAIATPTVAETSEAT* |
Ga0066673_108301601 | 3300005175 | Soil | GYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT* |
Ga0066684_109130261 | 3300005179 | Soil | LMFEAGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT* |
Ga0066388_1024845311 | 3300005332 | Tropical Forest Soil | YTRALIELGYRDAMEARSALVAFMGGEKLPQVMTAAGVAQAT* |
Ga0070661_1004436271 | 3300005344 | Corn Rhizosphere | ESGYTRELIELGYRDAMEAREALDAFMSGEKTPQVVATSPGVVAQAT* |
Ga0070714_1011630342 | 3300005435 | Agricultural Soil | ALIELGYRDAMEARAALVAFMSGERLPPLMTAAGVAQAT* |
Ga0070694_1009708521 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | AGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT* |
Ga0070741_106371592 | 3300005529 | Surface Soil | SGYTRALIELGYRDAMEARAAILAFMSGEKLPPVLTSPGVAQAT* |
Ga0070679_1009889292 | 3300005530 | Corn Rhizosphere | ALIELGYRDAMEARTPLLAFMGGEKLPQVMTAPGVAQVT* |
Ga0070731_108786951 | 3300005538 | Surface Soil | RALIELGYRDAMDARAAIMAFMSGEKLPPVLTSPGVAQAT* |
Ga0070731_111900982 | 3300005538 | Surface Soil | FESGYTRALIELGYRDAMDARAAIIAFMSGEKLPPVLTSPGVAQAT* |
Ga0070704_1020869241 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | TRAMIELGYRDAMQARTALVAFMSGEKLPHVMTAPGVAQAT* |
Ga0068856_1019896231 | 3300005614 | Corn Rhizosphere | ESGYTRALIELGYRDAMEARAAIMAFMSGEKLPPVLTSPGVAQAT* |
Ga0068862_1015053552 | 3300005844 | Switchgrass Rhizosphere | LIELGYRDATEARSTLLAFMSGEKTPQAAAAPGVVAQAT* |
Ga0070766_104429771 | 3300005921 | Soil | TRALIELGYRDAMEARAALQAFMEGEKLPQVMTAAGVAQAT* |
Ga0066789_104394792 | 3300005994 | Soil | GYTRELIELGYKDAMEARTTLLAFMTGEALPSVITAAGVTQAT* |
Ga0070765_1009764992 | 3300006176 | Soil | GYTRALIELGYRDAMEARAAIMAFMSGEKLPPVLTSPGVAQAT* |
Ga0075021_107349521 | 3300006354 | Watersheds | GYTRALIELGYRDAMEARSALTAFMSGEKLPQVMTAAGVAQAT* |
Ga0074059_117666392 | 3300006578 | Soil | LVELGYRDAMQARTALVAFMSGEKLPHVMTAPGVAQAT* |
Ga0079220_119847101 | 3300006806 | Agricultural Soil | LIELGYRDAMEARSALVAFMSGERLPPLMTAAGVAQAT* |
Ga0079215_102970492 | 3300006894 | Agricultural Soil | FESSYTRELIELGYRDAMEARTTLVAFMSGENLPSVVTAPGVAQAT* |
Ga0105237_119143082 | 3300009545 | Corn Rhizosphere | ELIELGYRDAMEARGALDAFMSGEKTPQVVDTAPGVVAQAT* |
Ga0099796_105220222 | 3300010159 | Vadose Zone Soil | VKHLIELGYRDAMEARSALLAFMSGEKLPQVMTAAGVAQAT* |
Ga0134128_127285092 | 3300010373 | Terrestrial Soil | YLTFESGYTRALIELGYRDAMEARAAIMAFMSGEKLPPVLTSPGVAQAT* |
Ga0126381_1014330461 | 3300010376 | Tropical Forest Soil | AGYTRALIELGYRDAMEARGALLAFMSGERLPGVMTAAGVAQAT* |
Ga0137384_102761791 | 3300012357 | Vadose Zone Soil | ALIELGYRDAMEARGGITAFMSGEKLPTVMTAAGVAQAT* |
Ga0137395_109849732 | 3300012917 | Vadose Zone Soil | FEAGYTRALIELGYRDAMEARSALLAFMSGEKLPQVMTAAGVAQAT* |
Ga0137396_102401131 | 3300012918 | Vadose Zone Soil | ALIELGYRDAMEARAALTAFMSGEKLPQVMTAAGVAQAT* |
Ga0137394_103843921 | 3300012922 | Vadose Zone Soil | ALIELGYRDAMEARSALTAFMSGEKLPQVMTAAGVAQAT* |
Ga0164243_108565481 | 3300012940 | Compost | TRELIELGYRDAMEARCALRAFVTGEQLPSLLTSPGVAQAT* |
Ga0164306_108216952 | 3300012988 | Soil | YTRAMIELGYRDAMQARTALVAFMSGEKLPHVMTAPGVAQAT* |
Ga0182036_101254751 | 3300016270 | Soil | ELGYRDAMEARSALVAFMGGEKLPQLMTAAGVAQAT |
Ga0182035_104601371 | 3300016341 | Soil | ESGYTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0182035_115039103 | 3300016341 | Soil | ALIELGYRDAMEARAALMAFMGGEKLPQVMTAAGVAQAT |
Ga0182032_100149036 | 3300016357 | Soil | FEAGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0182032_109764842 | 3300016357 | Soil | ELGYRDAMEVQPALLAFMSGERSPPVLTAPVVAQST |
Ga0182040_118041921 | 3300016387 | Soil | YTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0182039_120386412 | 3300016422 | Soil | LIELGYRDAMEARAALMAFMSGEKLPQLMTAAAVAQVSS |
Ga0182038_101696194 | 3300016445 | Soil | RALIELGYRDAMEARSALVAFMGGEKLPQVMTAAGVAQAT |
Ga0187824_100334964 | 3300017927 | Freshwater Sediment | YTRALIELGYRDAMEARTPLLAFMGGEKLPQVMTASGVAQVT |
Ga0187824_102102851 | 3300017927 | Freshwater Sediment | SGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0187825_100978881 | 3300017930 | Freshwater Sediment | SGYTRALIELGYRDAMEARTALLAFMGGEKLPQMLTASGVAQLT |
Ga0187778_106258181 | 3300017961 | Tropical Peatland | GYTRALIELGYRDAMEARSALVAFMSGARLPAVLTAPGVAQAT |
Ga0179594_100101564 | 3300020170 | Vadose Zone Soil | LIELGYRDAMEARSALTAFMSGEKLPQVMTAAGVAQAT |
Ga0210404_104624062 | 3300021088 | Soil | MFEAGYTRALIELGYRDAMEARSALTAFMSGEKLPQVMTAAGVAQAT |
Ga0210404_105880861 | 3300021088 | Soil | ALIELGYRDAMEARAAIMAFMSGEKLPPVLTSPGVAQATS |
Ga0210387_103612593 | 3300021405 | Soil | AYTRALIELGYRDAMQARTALIAFMSGERLPQVMTSPGVAQVT |
Ga0210386_103740023 | 3300021406 | Soil | LIELGYRDAMQARAAIMAFMSGEKLPPVMTSPGVAQAT |
Ga0210391_101288981 | 3300021433 | Soil | AAYTRALIELGYRDAMQARTALIAFMSGERLPQVMTSPGVAQVT |
Ga0213878_102268532 | 3300021444 | Bulk Soil | ALIELGYRDAMEARGALVAFMSGARLPAVLTAPGVAQAT |
Ga0187846_102820121 | 3300021476 | Biofilm | LIFEAGYTRALIELGYRDAMEARSALVAFMSGARLPAVLTAPGVAQAT |
Ga0210402_120318431 | 3300021478 | Soil | GYTRALIELGYRDAMEARLPLTAFMSGEKLPQVMTAAGVAQAT |
Ga0247774_10099531 | 3300022903 | Plant Litter | RDLIQLGYRDAMEARTCLLAFVQGETLPSVMTSPGVAQAT |
Ga0247784_10454881 | 3300023270 | Plant Litter | ELIELGYKDAMEARTALLAFIEGETLPKVMTSAGVAQAT |
Ga0247784_11286162 | 3300023270 | Plant Litter | TRELIELGYKDAMEARTALLAFIEGETLPKVMTSAGVAQAT |
Ga0207654_111196842 | 3300025911 | Corn Rhizosphere | YLMFEAGYTRAMIELGYRDAMQARTALVAFMSGEKLPHVMTAPGVAQAT |
Ga0207671_108667091 | 3300025914 | Corn Rhizosphere | IELGYRDAMEAREALDAFMSGEKTPQVVAKAPGVVAQAT |
Ga0207664_102987053 | 3300025929 | Agricultural Soil | TRALIELGYRDAMEARAALVAFMSGERLPPLMTAAGVAQAT |
Ga0207711_121265262 | 3300025941 | Switchgrass Rhizosphere | ELIELGYRDAMEARGALDAFMSGEKTPQVVDTAPGVVAQAT |
Ga0207689_103516112 | 3300025942 | Miscanthus Rhizosphere | MFESGYTRELIELGYKDAMDARCALNAFVMGEQLPSVITSPGVAQAT |
Ga0207667_101999485 | 3300025949 | Corn Rhizosphere | YRDAMEAREALDAFMSGEKTPQVVATSPGVVAQAT |
Ga0207658_115552171 | 3300025986 | Switchgrass Rhizosphere | GYRDAMEAREALDAFMSGEKTPQVVATSPGVVAQAT |
Ga0209236_12484071 | 3300026298 | Grasslands Soil | ELGYRDAMEARGGITAFMSGEKLPTVMTAAGVAQAT |
Ga0209027_11438002 | 3300026300 | Grasslands Soil | GYTRALIELGYRDAMEARSALTAFMCGEKLPQVMTAAGVAQAT |
Ga0208577_1012731 | 3300026701 | Soil | GYTRALIELGYRDAMEARSALLAFMSGEKLPQVMTAAGVAQAT |
Ga0208603_10313482 | 3300027109 | Forest Soil | MFEAGYTRALIELGYRDAMQARTALIAFMSGEKLPEVISAPGVAQAT |
Ga0208995_10031844 | 3300027388 | Forest Soil | ALIELGYRDAMEARSALTAFMSGEKLPQVMTAAGVAQAT |
Ga0209220_10165704 | 3300027587 | Forest Soil | LGYRDAMEARSALTAFMSGEKLPQVMTAAGVAQAT |
Ga0209106_10108191 | 3300027616 | Forest Soil | LMFEAGYTRALIELGYRDAMEARSALTAFMSGEKLPQVMTAAGVAQAT |
Ga0208981_10273211 | 3300027669 | Forest Soil | ELGYRDAMEARSALLAFMSGEKLPQVMTAAGVAQAT |
Ga0209811_102925201 | 3300027821 | Surface Soil | VCAQAGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0209060_105790022 | 3300027826 | Surface Soil | EAGYTRALIELGYRDAMEARGALLAFMEGEKLPQVMTAAGVAQAT |
Ga0209579_101530572 | 3300027869 | Surface Soil | ELIELGYRDAMDARAALLAFMEGERLPPVLTSPGVAQAT |
Ga0268265_104637551 | 3300028380 | Switchgrass Rhizosphere | LIELGYRDATEARSTLLAFMSGEKTPQAAAAPGVVAQAT |
Ga0302235_103454631 | 3300028877 | Palsa | MFEAGYTRALIELGYRDAMEARSALIAFMSGEKLPQVMTAAGVAQAT |
Ga0308309_116603452 | 3300028906 | Soil | ALIELGYRDAMQARTALLAFMSGEKLPTVMTAPGVVQAT |
Ga0302302_11263331 | 3300029997 | Palsa | RALIELGYRDAMQARIALIAFMSGERLPQVMTSPGVAQVT |
Ga0311370_122445501 | 3300030503 | Palsa | RELIELGYRDATEARATIMAFMSGEKLPPVLTSPGVAQAT |
Ga0311372_104330404 | 3300030520 | Palsa | IELGYRDAMEARAAIMAFMSGEKLPPVLTSPGVAQAT |
Ga0265461_107644142 | 3300030743 | Soil | MFEAGYTRALIELGYRDAMEARGALLAFMSGEKLPAVMTAAGVAQAT |
Ga0265753_10510811 | 3300030862 | Soil | LGYRDAMEARGALLAFMSGEKLPAVMTAAGVTQAT |
Ga0170834_1036221031 | 3300031057 | Forest Soil | EVGYTRALIELGYRDDMEARGALLAFMSGEKLPAVMTAAGVAQAT |
Ga0307509_107974162 | 3300031507 | Ectomycorrhiza | GEYTRELIELGYKDAMEARTALLAFIEGENLPNVMTSPGVAQAT |
Ga0318534_100340494 | 3300031544 | Soil | IELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318534_102721861 | 3300031544 | Soil | YLTFESGYTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318534_107934982 | 3300031544 | Soil | LIELGYRDAMEARAALLAFMSGEKLPQVLTAAGVAQAT |
Ga0318572_108325751 | 3300031681 | Soil | RALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318493_108603341 | 3300031723 | Soil | GYTRALIELGYRDALEARTALLAFMSGEKLPQVMTAAGVAQAT |
Ga0318500_101641812 | 3300031724 | Soil | LTFEAGYTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318492_101195893 | 3300031748 | Soil | GYTRALIELGYRDAMEARSALMAFMGGEKLPQVMTAAGVAQAT |
Ga0318492_107881902 | 3300031748 | Soil | YLTFEAGYTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318494_105704131 | 3300031751 | Soil | IELGYRDAMEARSALMAFMGGEKLPQVMTAAGVAQAT |
Ga0307477_111295701 | 3300031753 | Hardwood Forest Soil | FEAGYTRALIELGYRDAMEARSALLAFMSGARLPAVLTAPGVAQAT |
Ga0307475_110341131 | 3300031754 | Hardwood Forest Soil | EAGYTRALIELGYRDAMEARSALGAFMGGEKLPQVMTAAGVAQAT |
Ga0318526_102731452 | 3300031769 | Soil | GYTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318498_105163482 | 3300031778 | Soil | ERGYTRALIELGYRDAMEARSALMAFMGGEKLPQVMTAAGVAQAT |
Ga0318498_105428622 | 3300031778 | Soil | GYTRAHIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318576_100692683 | 3300031796 | Soil | LIELGYRDAMEARSALVAFMGGEKLPQVMTAAGVAQAT |
Ga0318523_100399081 | 3300031798 | Soil | IELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318497_103929632 | 3300031805 | Soil | IELGYRDAMEARSALVAFMGGEKLPQVMTAAGVAQAT |
Ga0318568_106526592 | 3300031819 | Soil | TRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0307478_103567711 | 3300031823 | Hardwood Forest Soil | YTRELIELGYHDAMEARDALLAFMHGERTPQVVESVPGVVAQAT |
Ga0318517_105360522 | 3300031835 | Soil | ELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318511_101306242 | 3300031845 | Soil | GYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318551_100109991 | 3300031896 | Soil | LIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318551_106462031 | 3300031896 | Soil | LIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318520_105422631 | 3300031897 | Soil | GYTRALIELGYRDAMEARAALMAFMGGEKLPQVMTAAGVAQAT |
Ga0306923_101064035 | 3300031910 | Soil | FEAGYTRALIELGYRDAMEARSALVAFMGGEKLPQVMTAAGVAQAT |
Ga0310912_107076081 | 3300031941 | Soil | TFEGGYTRALIELGYRDAMEARAALMAFMGGEKLPQVMTAAGVAQAT |
Ga0307479_106771202 | 3300031962 | Hardwood Forest Soil | LIELGYKDAMEARAAIMAFMSGEKLPPMLTSPGVAQAT |
Ga0318558_101377541 | 3300032044 | Soil | TRALIELGYRDAMEARSALVAFMGGEKLPQVMTAAGVAQAT |
Ga0318558_103536791 | 3300032044 | Soil | FEAGYTRALIELGYRDAMEARTALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318570_102817232 | 3300032054 | Soil | SSAGYTRELIELGYRDAMEVQPALLAFMSGERSPPVLTAPVVAQST |
Ga0318513_100454461 | 3300032065 | Soil | LTFEAGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0318513_101566861 | 3300032065 | Soil | TRALIELGYRDAMEARAALMAFMGGEKLPQVMTAAGVAQAT |
Ga0318513_105531592 | 3300032065 | Soil | LGYRDAMEARSALMAFMGGEKLPQVMTAAGVAQAT |
Ga0308173_115845122 | 3300032074 | Soil | FEGEYTRELIELGYKDAMEARTALLAFIEGETLPNVLTSPGVAQAT |
Ga0318577_105979552 | 3300032091 | Soil | YLTFEAGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0335078_100042111 | 3300032805 | Soil | FEAAYTRALIELGYRDAMEARAALAAFMSGAQLPPLMTAPGVAQAT |
Ga0335078_114266462 | 3300032805 | Soil | RELIELGYRDAMEARHALVAFVSGEQLPPVLATPGVAQAT |
Ga0335075_101436481 | 3300032896 | Soil | IELGYRDAMEARTALVAFMSGERLPSVLAASGVAQAT |
Ga0335075_107776442 | 3300032896 | Soil | LGYRDAMEARTALVAFMNGERLPPLMTAAGVAQAT |
Ga0335075_112304231 | 3300032896 | Soil | MFEAGYTRELIALGYRDAMEARTALVAFMSGERLPPVLTAPGVAQAT |
Ga0335076_105680352 | 3300032955 | Soil | TRELIELGYRDAMDARAALLAFMEGERLPPVLTSPGVAQAT |
Ga0335077_121477842 | 3300033158 | Soil | FESGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0310914_105251771 | 3300033289 | Soil | EAGYTRALIELGYRDAMEARSALMAFMSGEKLPQVMTAAGVAQAT |
Ga0334854_002994_4001_4126 | 3300033829 | Soil | YTRELIELGYRDAMDARVALMAFMRGETLPAFVTAAGVTQA |
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