Metagenome / Metatranscriptome Family F064868

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064868
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	71 residues
Representative Sequence	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLQQLSDAESQELEAQWQEALARA
Number of Associated Samples	97
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.20 %
% of genes near scaffold ends (potentially truncated)	43.75 %
% of genes from short scaffolds (< 2000 bps)	88.28 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.562 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (15.625 % of family members)
Environment Ontology (ENVO)	Unclassified (24.219 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.188 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.33% β-sheet: 24.49% Coil/Unstructured: 59.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.34.11.0: automated matches	d2hbwa1	2hbw	0.59194
b.34.2.0: automated matches	d1wyxa_	1wyx	0.55733
b.34.6.0: automated matches	d5hk3a_	5hk3	0.55413
b.34.6.0: automated matches	d6l2aa1	6l2a	0.55157
b.34.6.2: Kid/PemK	d1m1fa_	1m1f	0.55017

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF01176	eIF-1a	14.84
PF00076	RRM_1	8.59
PF01381	HTH_3	7.03
PF04909	Amidohydro_2	1.56
PF00487	FA_desaturase	0.78
PF07690	MFS_1	0.78
PF13432	TPR_16	0.78
PF01145	Band_7	0.78
PF00012	HSP70	0.78
PF02283	CobU	0.78
PF00691	OmpA	0.78
PF00872	Transposase_mut	0.78
PF13358	DDE_3	0.78
PF02219	MTHFR	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	14.84
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	0.78
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.78
COG2087	Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase	Coenzyme transport and metabolism [H]	0.78
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.78
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.56 %
Unclassified	root	N/A	48.44 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.56 %
Unclassified	root	N/A	48.44 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.56 %
Unclassified	root	N/A	48.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.03 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %
Aquificae	phylum	All Organisms → cellular organisms → Bacteria → Aquificae	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.44 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	28.91 %
Aquificae	class	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae	0.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.44 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	28.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %
Aquificales	order	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.44 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	24.22 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.78 %
Aquificaceae	family	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.44 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	24.22 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.78 %
Hydrogenivirga	genus	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenivirga	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.44 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	24.22 %
unclassified Hydrogenivirga	no rank	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenivirga → unclassified Hydrogenivirga	0.78 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.44 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	24.22 %
Hydrogenivirga sp. 128-5-R1-1	species	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenivirga → unclassified Hydrogenivirga → Hydrogenivirga sp. 128-5-R1-1	0.78 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_102285391	Not Available	759	Open in IMG/M
3300002568\|C688J35102_118954237	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	618	Open in IMG/M
3300002908\|JGI25382J43887_10350950	Not Available	626	Open in IMG/M
3300003890\|Ga0063162_1000020	All Organisms → cellular organisms → Bacteria	237114	Open in IMG/M
3300004081\|Ga0063454_100756696	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	743	Open in IMG/M
3300004463\|Ga0063356_101057234	Not Available	1165	Open in IMG/M
3300004801\|Ga0058860_10003523	Not Available	991	Open in IMG/M
3300004801\|Ga0058860_10110642	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2230	Open in IMG/M
3300005172\|Ga0066683_10257094	Not Available	1083	Open in IMG/M
3300005187\|Ga0066675_10986683	Not Available	633	Open in IMG/M
3300005332\|Ga0066388_100032084	All Organisms → cellular organisms → Bacteria	4967	Open in IMG/M
3300005332\|Ga0066388_100157132	All Organisms → cellular organisms → Bacteria	2860	Open in IMG/M
3300005332\|Ga0066388_100327497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2178	Open in IMG/M
3300005332\|Ga0066388_100663019	Not Available	1656	Open in IMG/M
3300005332\|Ga0066388_101833163	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1080	Open in IMG/M
3300005332\|Ga0066388_104419804	Not Available	716	Open in IMG/M
3300005332\|Ga0066388_105216781	Not Available	659	Open in IMG/M
3300005446\|Ga0066686_10673404	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005467\|Ga0070706_101461319	Not Available	625	Open in IMG/M
3300005518\|Ga0070699_100407302	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300005529\|Ga0070741_11195591	Not Available	641	Open in IMG/M
3300005536\|Ga0070697_100637132	Not Available	938	Open in IMG/M
3300005598\|Ga0066706_10131904	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300005618\|Ga0068864_101136930	Not Available	778	Open in IMG/M
3300005764\|Ga0066903_101045331	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300005764\|Ga0066903_104085908	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	782	Open in IMG/M
3300005764\|Ga0066903_105539902	Not Available	665	Open in IMG/M
3300005844\|Ga0068862_101054339	Not Available	806	Open in IMG/M
3300006046\|Ga0066652_101938393	Not Available	527	Open in IMG/M
3300006047\|Ga0075024_100229698	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	882	Open in IMG/M
3300006194\|Ga0075427_10067351	Not Available	634	Open in IMG/M
3300006872\|Ga0101947_1037520	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300006872\|Ga0101947_1137009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510	Open in IMG/M
3300006904\|Ga0075424_101308018	Not Available	771	Open in IMG/M
3300007076\|Ga0075435_100607203	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	949	Open in IMG/M
3300007255\|Ga0099791_10178334	All Organisms → cellular organisms → Bacteria → Proteobacteria	998	Open in IMG/M
3300009012\|Ga0066710_100184887	All Organisms → cellular organisms → Bacteria → Proteobacteria	2948	Open in IMG/M
3300009038\|Ga0099829_10197335	Not Available	1627	Open in IMG/M
3300009038\|Ga0099829_10350944	Not Available	1215	Open in IMG/M
3300009038\|Ga0099829_11018716	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	687	Open in IMG/M
3300009089\|Ga0099828_10072780	All Organisms → cellular organisms → Bacteria → Proteobacteria	2914	Open in IMG/M
3300009089\|Ga0099828_10684082	Not Available	921	Open in IMG/M
3300009094\|Ga0111539_12165651	Not Available	645	Open in IMG/M
3300009100\|Ga0075418_10374306	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1522	Open in IMG/M
3300009100\|Ga0075418_12456857	Not Available	569	Open in IMG/M
3300009147\|Ga0114129_10362517	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1917	Open in IMG/M
3300009147\|Ga0114129_12933113	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300009162\|Ga0075423_11739144	Not Available	672	Open in IMG/M
3300009162\|Ga0075423_12737509	Not Available	540	Open in IMG/M
3300009444\|Ga0114945_10797916	Not Available	579	Open in IMG/M
3300009444\|Ga0114945_10990667	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	521	Open in IMG/M
3300009691\|Ga0114944_1019891	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300009792\|Ga0126374_10433288	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300009813\|Ga0105057_1071603	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	602	Open in IMG/M
3300010043\|Ga0126380_11598174	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	582	Open in IMG/M
3300010046\|Ga0126384_10145056	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1820	Open in IMG/M
3300010047\|Ga0126382_10155110	Not Available	1574	Open in IMG/M
3300010047\|Ga0126382_10219947	All Organisms → cellular organisms → Bacteria → Proteobacteria	1367	Open in IMG/M
3300010047\|Ga0126382_10756532	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	822	Open in IMG/M
3300010047\|Ga0126382_10895531	Not Available	767	Open in IMG/M
3300010047\|Ga0126382_11146664	Not Available	692	Open in IMG/M
3300010047\|Ga0126382_12314346	Not Available	520	Open in IMG/M
3300010085\|Ga0127445_1069207	Not Available	755	Open in IMG/M
3300010085\|Ga0127445_1092046	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300010117\|Ga0127449_1105194	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300010130\|Ga0127493_1155369	Not Available	519	Open in IMG/M
3300010136\|Ga0127447_1093409	Not Available	770	Open in IMG/M
3300010140\|Ga0127456_1038390	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300010142\|Ga0127483_1167494	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300010304\|Ga0134088_10038525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2173	Open in IMG/M
3300010323\|Ga0134086_10371933	Not Available	569	Open in IMG/M
3300010325\|Ga0134064_10440773	Not Available	529	Open in IMG/M
3300010336\|Ga0134071_10245957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	890	Open in IMG/M
3300010337\|Ga0134062_10207824	Not Available	895	Open in IMG/M
3300010375\|Ga0105239_10737520	Not Available	1127	Open in IMG/M
3300010883\|Ga0133547_11245585	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1417	Open in IMG/M
3300010938\|Ga0137716_10002405	All Organisms → cellular organisms → Bacteria	48309	Open in IMG/M
3300011269\|Ga0137392_10203099	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1621	Open in IMG/M
3300012204\|Ga0137374_10482104	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	967	Open in IMG/M
3300012204\|Ga0137374_11297339	Not Available	502	Open in IMG/M
3300012209\|Ga0137379_10166409	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300012212\|Ga0150985_111076594	All Organisms → cellular organisms → Bacteria	1830	Open in IMG/M
3300012359\|Ga0137385_10093843	All Organisms → cellular organisms → Bacteria	2661	Open in IMG/M
3300012359\|Ga0137385_10785397	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	792	Open in IMG/M
3300012362\|Ga0137361_11824715	Not Available	526	Open in IMG/M
3300012376\|Ga0134032_1018082	Not Available	700	Open in IMG/M
3300012384\|Ga0134036_1108965	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300012387\|Ga0134030_1235481	Not Available	686	Open in IMG/M
3300012393\|Ga0134052_1107283	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300012405\|Ga0134041_1263705	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300012469\|Ga0150984_110895120	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	900	Open in IMG/M
3300012930\|Ga0137407_11219197	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	714	Open in IMG/M
3300012948\|Ga0126375_10768731	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	759	Open in IMG/M
3300012948\|Ga0126375_11001150	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	680	Open in IMG/M
3300014745\|Ga0157377_11067526	Not Available	616	Open in IMG/M
3300015374\|Ga0132255_105783455	Not Available	523	Open in IMG/M
3300017659\|Ga0134083_10147248	Not Available	951	Open in IMG/M
3300017659\|Ga0134083_10161640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	911	Open in IMG/M
3300018031\|Ga0184634_10566310	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	501	Open in IMG/M
3300018053\|Ga0184626_10253215	Not Available	738	Open in IMG/M
3300018074\|Ga0184640_10272871	Not Available	768	Open in IMG/M
3300018074\|Ga0184640_10314921	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300018077\|Ga0184633_10093101	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1554	Open in IMG/M
3300018077\|Ga0184633_10289769	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	836	Open in IMG/M
3300018431\|Ga0066655_10908013	Not Available	603	Open in IMG/M
3300018433\|Ga0066667_11338656	Not Available	627	Open in IMG/M
3300019229\|Ga0180116_1193010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	841	Open in IMG/M
3300019255\|Ga0184643_1207519	All Organisms → cellular organisms → Bacteria	2938	Open in IMG/M
3300019360\|Ga0187894_10190419	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1009	Open in IMG/M
3300019487\|Ga0187893_10041994	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4855	Open in IMG/M
3300019487\|Ga0187893_10524443	Not Available	767	Open in IMG/M
3300020078\|Ga0206352_10632509	Not Available	640	Open in IMG/M
3300026075\|Ga0207708_10540130	Not Available	982	Open in IMG/M
3300026095\|Ga0207676_11040369	Not Available	808	Open in IMG/M
3300026118\|Ga0207675_101536839	Not Available	686	Open in IMG/M
3300027875\|Ga0209283_10248008	Not Available	1181	Open in IMG/M
3300027875\|Ga0209283_10700879	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300027894\|Ga0209068_10874598	Not Available	531	Open in IMG/M
3300028381\|Ga0268264_12096248	Not Available	574	Open in IMG/M
3300031559\|Ga0308135_1061144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	678	Open in IMG/M
3300031965\|Ga0326597_10281843	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Hydrogenivirga → unclassified Hydrogenivirga → Hydrogenivirga sp. 128-5-R1-1	1900	Open in IMG/M
3300032782\|Ga0335082_11406433	Not Available	568	Open in IMG/M
3300033004\|Ga0335084_12127298	Not Available	545	Open in IMG/M
3300034643\|Ga0370545_158418	Not Available	525	Open in IMG/M
3300034644\|Ga0370548_020411	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1006	Open in IMG/M
3300034676\|Ga0314801_129156	Not Available	593	Open in IMG/M
3300034680\|Ga0370541_013906	Not Available	846	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.47%
Host-Associated	Host-Associated	17.97%
Engineered	Engineered	1.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.19%
Plants	Host-Associated → Plants	16.41%
Aquatic	Environmental → Aquatic	13.28%
Human	Host-Associated → Human	1.56%
Built Environment	Engineered → Built Environment	1.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.16%
Sediment	Environmental → Aquatic → Sediment	6.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.25%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.91%
Cave	Environmental → Terrestrial → Cave	2.34%
Freshwater	Environmental → Aquatic → Freshwater	1.56%
Marine	Environmental → Aquatic → Marine	1.56%
Digestive System	Host-Associated → Human → Digestive System	1.56%
Unclassified	Engineered → Built Environment → Unclassified	1.56%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.69%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	2.34%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.56%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.56%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.56%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	1.56%
Sand	Environmental → Terrestrial → Soil → Sand	0.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.69%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	3.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.12%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.56%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.56%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	1.56%
Neutral	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral	0.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	15.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.12%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.12%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.12%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	2.34%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	2.34%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.56%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	1.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.56%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.56%
Drinking Water Pipes	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes	1.56%
Hot Spring Sediments	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediments	0.78%
Hot Spring Fe-Si Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.78%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003890	Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - Chocolate Pots Core 3, 1cm	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006872	Biofilm microbial communities from drinking water pipes in Singapore	Engineered	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010117	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010124	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010130	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010136	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300010938	Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012384	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012387	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019229	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031559	Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_937_33.10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1022853911	3300000955	Soil	YFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDAESQELEQHWHEALSRF
C688J35102_1189542372	3300002568	Soil	YRTESRYYFSSRQLLPTGSLVFFSDKIKRYVHPTDGTLLDPHPRLQELSEDESRELEAQWQTALARY*
JGI25382J43887_103509501	3300002908	Grasslands Soil	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0063162_1000020207	3300003890	Hot Spring Sediments	MKAYRTESSYYFSSRQLLAAGTLVFFSEKQRRYVHPTAGVLLDPHPRLLALSDEESRKLEKEWQGALASL*
Ga0063454_1007566961	3300004081	Soil	MRAYRTESRYYFSSRQLLPTGSLVFFSDKIKRYVHPTDGTLLDPHPRLQELSEDESRELEAQWQTALARY*
Ga0063356_1010572343	3300004463	Arabidopsis Thaliana Rhizosphere	MKAYHTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY*
Ga0058860_100035233	3300004801	Host-Associated	MKAYHTQSPYYFASKHVLPAGSVVFFSEKLRRYVHPTDGVLYDPHPRLHSLSDTESQALEEQWYDALRGY*
Ga0058860_101106422	3300004801	Host-Associated	MRKRRNKGTPERGRVAAKAATAPTGKDHFPMKAYHTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY*
Ga0066683_102570943	3300005172	Soil	MKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0066675_109866831	3300005187	Soil	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALA
Ga0066388_1000320843	3300005332	Tropical Forest Soil	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSEAESQELEEHWHEALSRF*
Ga0066388_1001571322	3300005332	Tropical Forest Soil	MRAYRTESRYYFSSRQLLPTGSIVFYYDKLHRYVHPTDGILLDPHPRLEELSDAESQALQAQWQTALARY*
Ga0066388_1003274972	3300005332	Tropical Forest Soil	MKAYRTESSYYFSSRQLLAAGALVFFSDKQRRYVHPAAGVLLDPHPRLQALSDEESRKLEKEFQEALASI*
Ga0066388_1006630191	3300005332	Tropical Forest Soil	MRAYRTQARYYFSTRQLLPAGSLVFFSDKLQRYVHPTDGTLLDPHPRLQELSDKESQELAAHWQTALARY*
Ga0066388_1018331631	3300005332	Tropical Forest Soil	MRAYRTESRYYFSTRQLLPSGSLVFFSDKLQRYVHPTDGTLLDPHPRLQELSEDESRELEAQWQTALARY*
Ga0066388_1044198041	3300005332	Tropical Forest Soil	MKVYRTESHYYFSSKQLLPAGSLVFFSDKLRRYVHPTAGTLLDPHPRLQPLSEAESQEFAEHWQEALVRY*
Ga0066388_1052167812	3300005332	Tropical Forest Soil	MKAYHTQSPYYFSSKHILPAGTLVFFSEKLHRYIHPTDGILYDPHPRLHSLSETESQELEAQWHEALLTY*
Ga0066686_106734041	3300005446	Soil	RAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0070706_1014613192	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEA
Ga0070699_1004073021	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	SSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDAESQELEEHWHEALSRF*
Ga0070741_111955912	3300005529	Surface Soil	MQAYLTESPYYFSSKHLLPAGSVVFFSTKIRRYVHPTDGVLLDGHPRLQRLSEGESQALSVQWREALARY*
Ga0070697_1006371322	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDAESQELEEHWHEALSRL*
Ga0066706_101319043	3300005598	Soil	VRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0068864_1011369301	3300005618	Switchgrass Rhizosphere	ATAPTGKDHFPMKAYHTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY*
Ga0066903_1010453311	3300005764	Tropical Forest Soil	MKVYRTESRYYFSSKQLLPAGELVFFSDRLRRYVHPTAGTLLDPYPRLCLLPEEESAAFEEHWQETLSRFTKEKG*
Ga0066903_1040859082	3300005764	Tropical Forest Soil	MQAYRTESCYYFSSKKLLPIGSVVFFSNKIRRYVHPTDGTLLDPHPRLQVLPDTESQELEAHWQTALARY*
Ga0066903_1055399021	3300005764	Tropical Forest Soil	ESIYYFSSKQLLPAGSLVFYSTKLSRYVHPTAGILLDAHPRLEVLPVGESQALETQWQEALAKY*
Ga0068862_1010543391	3300005844	Switchgrass Rhizosphere	MKAYHTQSPYYFASKHVLPAGSLVFFSEKLRRYVHPTDGVLYDPHPRLHSLSDTESQALEEQWYDALRGY*
Ga0066652_1019383931	3300006046	Soil	RAKWPRTTPRRVEETLPMKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0075024_1002296982	3300006047	Watersheds	MKVYRTESRYYFSSKQILPVGSLVFFSEKIKRYVHPTDGVLLDPHPRLHQLSDEEGRELEVRWEKDLARY*
Ga0075427_100673511	3300006194	Populus Rhizosphere	PYYFASKHVLPAGSLVFFSAKLRRYVHPTDGVLYDPYPRLQPLSDMESQALEEQWDDALRGY*
Ga0101947_10375203	3300006872	Drinking Water Pipes	LAGKEPFIMKAYRTESSYYFSSKQLLAAGVVVFFSDKQRRYIHPTAGVLLDPHPRLLPLSDEESRKLEKEWREPLSSQER*
Ga0101947_11370092	3300006872	Drinking Water Pipes	MKAYRTESPYYFASKQLLPVGSVVFFSEKLHRYVHPTEGVLLDGYPRLQLLSEDESQALAAQWRDALIRY*
Ga0075424_1013080182	3300006904	Populus Rhizosphere	MQAYLTESPYYFSSQQLLPVGSLVFFSEKIRRYVHPTDGVLLDGYPRLDRLSEAESQALEARWREALARYS*
Ga0075435_1006072032	3300007076	Populus Rhizosphere	YYFSSRQLLPVGSLVFFSDKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALARY*
Ga0099791_101783341	3300007255	Vadose Zone Soil	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDVESQELEEHWQEALSRL*
Ga0066710_1001848873	3300009012	Grasslands Soil	VRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA
Ga0099829_101973352	3300009038	Vadose Zone Soil	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDAESQELEEHWQEALSRF*
Ga0099829_103509441	3300009038	Vadose Zone Soil	MRAYRTEVRYYFSSKQLLPVGSLVFFSDKLQRYVHPTDGILLDAHPYLQQLSDAESHKLEEQWHEALSRY*
Ga0099829_110187162	3300009038	Vadose Zone Soil	MRAYRTESRYYFSSKQLLPVGSLVFFSNKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALARY*
Ga0099828_100727806	3300009089	Vadose Zone Soil	MRAYRTESRYYFSSRQLLPVGSLVFFSNKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALARY*
Ga0099828_106840822	3300009089	Vadose Zone Soil	MPVSRAGKEIPSMKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDVESQELEEHWQEALSRL*
Ga0111539_121656512	3300009094	Populus Rhizosphere	MKAYHTQAPYYFASKHLLPVGSVVFFSEKLRRYVHPTDGVLYDLHPRLQPLSEAESHALQEQWSDALLSY*
Ga0075418_103743062	3300009100	Populus Rhizosphere	MKAYHTRAPYYFASKHILPAGSVVFFSEKLRRYVHPTDGVLYDLHPRLRPLSEAESHALQEQWSDALLSY*
Ga0075418_124568572	3300009100	Populus Rhizosphere	YFASKHVLPAGSLVFFSAKLRRYVHPTDGVLYDPYPRLQPLSDMESQALEEQWDDALRGY
Ga0114129_103625171	3300009147	Populus Rhizosphere	MRAYRTESRYYFSSRQLLPVGSLVFFSDKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALARY*
Ga0114129_129331131	3300009147	Populus Rhizosphere	AGKETFTMRAYRTESRYYFSSRQLLPVGSLVFFSDKIKRYLHPTDGTLLDPHPRLQQLSDAESQELEAHWQKALARY*
Ga0075423_117391441	3300009162	Populus Rhizosphere	MRAYRTESRYYFSSRQLLPAGSLVFFSDKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALARY*
Ga0075423_127375091	3300009162	Populus Rhizosphere	MKAYHTQAPYYFASKHILPAGSVVFFSEKLRRYVHPTDGVLYDLHPRLRPLSEAESHALQEQWSDALLSY*
Ga0114945_107979161	3300009444	Thermal Springs	MRAYRTESTYYFSSKQLLPAGSLVFFSDKHRRYIHPEAGMLLDLHPRLQSLSDAESQQLEKQWQEALSRF*
Ga0114945_109906671	3300009444	Thermal Springs	TESRYYFSSKQLLPAGSLVFFSDKLRRYVHPTAGTLLDPHPRLQLLSEAETQEFEKHWQETLSRV*
Ga0114944_10198911	3300009691	Thermal Springs	MRAYRTESRYYFSSRQLLPVGSLVFFSEKLRRYVHPTDGTLLDPHPRLRQLSDAESLELEEHWKHALIRY*
Ga0126374_104332881	3300009792	Tropical Forest Soil	MRAYRTESRYYFSSRQLLPTGSIVFYYDKLHRYVHPTDGILLDPHPRLEELSDAESQALQAQWQT
Ga0105057_10716032	3300009813	Groundwater Sand	LPMRVYRTESRYYFSSRQLLPVGSVVFFSEKLQRYIHPTSGTLLDPHPRLQRLSDAESLELEEHWKQALVRY*
Ga0126380_115981741	3300010043	Tropical Forest Soil	MKAYRTESPYYFSSKQLLPIGSVVFFSEKLKRYIHPTEGILFDPHPRLQSLSVEESLELETHWQQALSRY*
Ga0126384_101450563	3300010046	Tropical Forest Soil	MRAYRTESRYYFSSRHLLPTGSLVFFSTKLHRYVHPTEGILLDPHPRLQELSDAESQELEAHWQTALARY*
Ga0126382_101551102	3300010047	Tropical Forest Soil	MKAYRTESSYYFSSRQLLPAGALVFFSDKHQRYIHPTAGTLLDPHPRLQSLSDAESQELEQHWHEALSRF*
Ga0126382_102199472	3300010047	Tropical Forest Soil	MKAYRTESPYYFSSKQLLPIGAVVFFSEKLNRYVHPTEGILFDPHPRLHSLSAEESLELETRWQDSLSRY*
Ga0126382_107565321	3300010047	Tropical Forest Soil	MRAYRTESRYYFSSRHLLPTGSLVFFSTKLRRYVHPTEGILLDPHPRLQELSDAESQELEVHWQTALARY*
Ga0126382_108955311	3300010047	Tropical Forest Soil	MRAYRTESRYYFSSKQLLPAGSLVFFSDKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEVHW
Ga0126382_111466641	3300010047	Tropical Forest Soil	MRAYRTQARYYFSTRQLLPAGSLVFFSDKLQRYVHPTDGTLLDPHPRLQELSDAESQELTAHWQTALARY*
Ga0126382_123143461	3300010047	Tropical Forest Soil	MKAYRTESSYYFSSKQLLPAGSLVFFSDKHRRYIHPTAGTLLDPHPRLQLLSDEESQGLEREWQDALSRV*
Ga0127445_10692071	3300010085	Grasslands Soil	AGLEPQDRAKWPRTTPRRVEETLPMKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0127445_10920461	3300010085	Grasslands Soil	TMRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0127449_11051941	3300010117	Grasslands Soil	AYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0127498_10054281	3300010124	Grasslands Soil	SKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0127493_11553691	3300010130	Grasslands Soil	PELQDRAKWPRTTPRRVEETLPMKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0127447_10934091	3300010136	Grasslands Soil	TTPRRVEETLPMKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0127456_10383901	3300010140	Grasslands Soil	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLQQLSDAESQELETQWQEALARA*
Ga0127483_11674941	3300010142	Grasslands Soil	RTMRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0134088_100385251	3300010304	Grasslands Soil	MRAYRTESSYYFSSKQLLPAGALVFFSDKYRRYVHPTAGTLLDPHPRLQQLSDAESQELEAQWQDALARV*
Ga0134086_103719332	3300010323	Grasslands Soil	PTRAGKETRTMRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0134064_104407731	3300010325	Grasslands Soil	SKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0134071_102459571	3300010336	Grasslands Soil	MKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDALPRL*
Ga0134062_102078241	3300010337	Grasslands Soil	AKWPRTTPRRVEETLPMKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0105239_107375201	3300010375	Corn Rhizosphere	MKAYHTQSPYYFASKHVLPAGSLVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY*
Ga0133547_112455851	3300010883	Marine	MRAYRTESPYYFSSKRLLSRGAVVFYSEKIRRYVHPQDGILFDQHPRLHSLSEEESQELESRWQEALSHY*
Ga0137716_1000240514	3300010938	Hot Spring Fe-Si Sediment	MQAYLTESPYYFSSKHLLPAGSVVFFSTKIRRYVHPTDGVLLDGHPRLQRLSESESQALSVQWREALARY*
Ga0137392_102030993	3300011269	Vadose Zone Soil	FSSKQLLPVGSLVFFSNKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALARY*
Ga0137374_104821042	3300012204	Vadose Zone Soil	MRAYRTESRYYFSSKQLLPIGSLVFFSDKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALSRY*
Ga0137374_112973392	3300012204	Vadose Zone Soil	TESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDAESQELEEHWHEALSRF*
Ga0137379_101664091	3300012209	Vadose Zone Soil	TRTMRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0150985_1110765943	3300012212	Avena Fatua Rhizosphere	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDAESQELEQHWHEALSRF*
Ga0137385_100938434	3300012359	Vadose Zone Soil	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYDHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0137385_107853972	3300012359	Vadose Zone Soil	MKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAH
Ga0137361_118247151	3300012362	Vadose Zone Soil	YYFSSKQLLPVGSVVFFMEKIRRYVHPTDGVLLDGHPRLHILPEGESQALEARWRDALARY*
Ga0134032_10180821	3300012376	Grasslands Soil	RYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0134036_11089651	3300012384	Grasslands Soil	TESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAEIQELEAQWQEALARA*
Ga0134030_12354811	3300012387	Grasslands Soil	TPRRVEETLPMKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL*
Ga0134052_11072833	3300012393	Grasslands Soil	PMRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0134041_12637051	3300012405	Grasslands Soil	SSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA*
Ga0150984_1108951203	3300012469	Avena Fatua Rhizosphere	MQAYLTESPYYFSSKQLLPVGSVVFFMEKIRRYVHPTDGVLLDGHPRLHILPEGESQALEARWRD
Ga0137407_112191971	3300012930	Vadose Zone Soil	MRAYRTESRYYFSSKQLLPVGSLVFFSNKIQRYVHPTDGTLLDPHPRLQQLSDVESQELEAHWQKALSRY*
Ga0126375_107687312	3300012948	Tropical Forest Soil	RAYRTESRYYFSSRQLLPTGSIVFYYDKLHRYVHPTDGILLDPHPRLEELSDAESQALQAQWQTALARY*
Ga0126375_110011502	3300012948	Tropical Forest Soil	YYFSSKQLLPARSLVFFSDKIQRYVHPTDNTLLNPHPRLQQLSDVESQELEAHWQKALSRY*
Ga0157377_110675262	3300014745	Miscanthus Rhizosphere	VAVKTATAPTGKDHFPMKAYHTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY*
Ga0132255_1057834551	3300015374	Arabidopsis Rhizosphere	MKAYHTQSPYYFSSKHVLPAGSLVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY*
Ga0134083_101472481	3300017659	Grasslands Soil	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQEL
Ga0134083_101616401	3300017659	Grasslands Soil	MKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDALPRL
Ga0184634_105663102	3300018031	Groundwater Sediment	MGLGTGPYDTPSYRPHTPATRAGKETLPVKAYRTESRYYFSSRQLLPVGSLVFFSDKIRRYVNPTDGTLLDPHPRLQPLSDAESQ
Ga0184626_102532152	3300018053	Groundwater Sediment	MKVYRTESPYYFSSRQLLPIGSVVFFLDKLSRYVHPTDGILLDPHPRLQLLSETESQALEERWRDALARY
Ga0184640_102728711	3300018074	Groundwater Sediment	TTAEPEKESFIMKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQVLSDVESRQLEEQWQEALSRT
Ga0184640_103149211	3300018074	Groundwater Sediment	MKVYRTESPYYFSSRQLLPIGSVVFFLDKLSRYVHPTDGILLDPHPRLQLLSETESQELEERWRDALARY
Ga0184633_100931013	3300018077	Groundwater Sediment	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQVLSDVESRQLEEQWQEALSRT
Ga0184633_102897692	3300018077	Groundwater Sediment	MRAYRTESRYYFSSRQLLPTGSLVFFSDKLRRYVHPTDGTLLDPHPRLQQLSDAESQELEVHWQKALSRY
Ga0066655_109080131	3300018431	Grasslands Soil	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLERLSDAESQELEAQWQEALARA
Ga0066667_113386561	3300018433	Grasslands Soil	MKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSEAESQEFEAHWQDTLPRL
Ga0180116_11930101	3300019229	Groundwater Sediment	KESPPMKAYRTESPYYFSSKQLLPVGSLVFFSEKLKRYVHPTGGILRDGYPRLQVLSETESHALENRWREALAGY
Ga0184643_12075194	3300019255	Groundwater Sediment	MRAYRTESSYYFSSKQLLPAGALVFFSDKHRRYVHPTAGTLLDPHPRLQQLSDAESQELEAQWQEALARA
Ga0187894_101904191	3300019360	Microbial Mat On Rocks	MKVYRTESCYYFSSRQLLPSGSLVFFSDKLRRYVHPTAGTLLDPHPRLQLLSEAESQEFEKHWQEALSRS
Ga0187893_100419946	3300019487	Microbial Mat On Rocks	YYYFSSKQLLPIGALVFFSEKIQRYVHPTDGVLLDPHPRLQPLSDEESLELETHWQKDLARY
Ga0187893_105244431	3300019487	Microbial Mat On Rocks	AYRTESRYYFSSKQLLPAGSLVFFSDRLQRYVNPTDGFLLDVHPYVEPLSDAESQQLEEHWHEALARY
Ga0206352_106325092	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MKAYHTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY
Ga0207708_105401303	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKAYHTQSPYYFASKHVLPAGSLVFFSEKLRRYVHPTDGVLYDPHPRLHSLSDTESQALEEQWYDALRGY
Ga0207676_110403691	3300026095	Switchgrass Rhizosphere	ERGRVAAKAATAPTGKDHFPMKAYHTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY
Ga0207675_1015368391	3300026118	Switchgrass Rhizosphere	MKAYHTQSPYYFASKHVLPAGSVVFFSEKLRRYIHPKEGILYDPHPRLHLLSETESQELETQWHDALLVY
Ga0209283_102480083	3300027875	Vadose Zone Soil	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDAESQELEEHWQEALSRF
Ga0209283_107008792	3300027875	Vadose Zone Soil	MKAYRTESSYYFSSRQLLPAGALVFFSDKHRRYIHPTAGTLLDPHPRLQSLSDVESQELEEHWQEALSRL
Ga0209068_108745981	3300027894	Watersheds	MKVYRTESRYYFSSKQILPVGSLVFFSEKIKRYVHPTDGVLLDPHPRLHQLSDEEGRELEVRWEKDLARY
Ga0268264_120962481	3300028381	Switchgrass Rhizosphere	APTGKDHFPMKAYHTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY
Ga0308135_10611441	3300031559	Marine	MRAYRTESPYYFSSKRLLSRGAVVFYSEKIRRYVHPQDGILFDQHPRLHSLSEEESQELE
Ga0326597_102818435	3300031965	Soil	MRAYRTKLPYYFSSKRLLARGAVVFYAEKIKRYVHPQDGILFDQHPRLHVLSEEESQELASQWQKQLSHYE
Ga0335082_114064331	3300032782	Soil	MKAYRTESSYYFSSRQLLPAGALVFFSDKHQRYVHPTAGTLLDPHPRLQSLSDAESQELEQHWHEALSRL
Ga0335084_121272981	3300033004	Soil	MKAYRTESPYYFSSQQLLPAGSLVFFSEKIKRYVHPTDGVLLDGYPRLQLLSEIESQALEDRWHEALARY
Ga0370545_158418_162_374	3300034643	Soil	MRAFRTESRYYFSSRQLLPVGSLVFFSDKLQRYVHPTDGTLLDPHPRLQELSVGESQELETHWQTALARY
Ga0370548_020411_703_915	3300034644	Soil	MQAYLTESPYYFSSKQLLPVGSVVFFMEKIRRYVHPTDGVLLDGHPRLHILPEGESQALEARWRDALARY
Ga0314801_129156_3_203	3300034676	Soil	HTQSPYYFASKHVLPAGALVFFSEKLRRYVHPTDGILYDSHPRLEPLSEAESRALEDQWSDALLGY
Ga0370541_013906_106_318	3300034680	Soil	MKVYRTESRYYFSSKQLLPVGSLVFFSDKIRRYVHPTDGTLLDPHPRLQLLSETESQEFEAHWQDTLPRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064868

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences