Metagenome / Metatranscriptome Family F064865

Overview

Basic Information

• Family ID: F064865
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 128
• Average Sequence Length: 40 residues
• Representative Sequence: GGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLRERLG
• Number of Associated Samples: 115
• Number of Associated Scaffolds: 128

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 48.44 %
• % of genes near scaffold ends (potentially truncated): 49.22 %
• % of genes from short scaffolds (< 2000 bps): 91.41 %
• Associated GOLD sequencing projects: 112
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (89.062 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.062 % of family members)
• Environment Ontology (ENVO): Unclassified (32.812 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (43.750 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 18.46%
  β-sheet: 20.00%
  Coil/Unstructured: 61.54%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF10262	Rdx	10.16
PF13456	RVT_3	9.38
PF00326	Peptidase_S9	8.59
PF01243	Putative_PNPOx	2.34
PF07690	MFS_1	2.34
PF09954	DUF2188	1.56
PF02558	ApbA	1.56
PF10604	Polyketide_cyc2	1.56
PF00171	Aldedh	1.56
PF00202	Aminotran_3	1.56

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0372	Citrate synthase	Energy production and conversion [C]	1.56
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.56
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.56
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.56
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.78
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.78
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.78
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.78
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.78
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.78

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.06 %
Unclassified	root	N/A	10.94 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.06 %
Unclassified	root	N/A	10.94 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.06 %
Unclassified	root	N/A	10.94 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.12 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	46.88 %
Unclassified	root	N/A	10.94 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	44.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Unclassified	root	N/A	10.94 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.81 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.12 %
Unclassified	root	N/A	10.94 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.78 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.78 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.56 %
Unclassified	root	N/A	10.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	32.03 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.78 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.56 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.78 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.03 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.56 %
Unclassified	root	N/A	10.94 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.78 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteriales bacterium 13_2_20CM_55_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_55_8	0.78 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.03 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.78 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	0.78 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.56 %
Unclassified	root	N/A	10.94 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300027799|Ga0233416_10027022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1910
3300000033|ICChiseqgaiiDRAFT_c0630415	Not Available	882
3300000559|F14TC_100933625	All Organisms → cellular organisms → Bacteria	854
3300000881|JGI10215J12807_1141775	All Organisms → cellular organisms → Bacteria	510
3300000881|JGI10215J12807_1170097	All Organisms → cellular organisms → Bacteria	1422
3300000890|JGI11643J12802_12255290	All Organisms → cellular organisms → Bacteria	1602
3300001213|JGIcombinedJ13530_109850731	All Organisms → cellular organisms → Bacteria	619
3300002568|C688J35102_119772979	All Organisms → cellular organisms → Bacteria	771
3300002568|C688J35102_120701759	All Organisms → cellular organisms → Bacteria	1380
3300004114|Ga0062593_100452249	All Organisms → cellular organisms → Bacteria	1171

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.78%
Environmental	Environmental	70.31%
Host-Associated	Host-Associated	28.91%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	9.38%
Plants	Host-Associated → Plants	28.91%
Terrestrial	Environmental → Terrestrial	60.94%
Wastewater	Engineered → Wastewater	0.78%

Category

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.78%
Floodplain	Environmental → Terrestrial → Floodplain	1.56%
Freshwater	Environmental → Aquatic → Freshwater	6.25%
Marine	Environmental → Aquatic → Marine	0.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.41%
Roots	Host-Associated → Plants → Roots	0.78%
Sediment	Environmental → Aquatic → Sediment	2.34%
Soil	Environmental → Terrestrial → Soil	59.38%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.81%
Lake	Environmental → Aquatic → Freshwater → Lake	3.12%
Loam	Environmental → Terrestrial → Soil → Loam	8.59%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.78%
Sand	Environmental → Terrestrial → Soil → Sand	0.78%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.34%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.34%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.78%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.47%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.47%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.34%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.12%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.78%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.78%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.56%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.78%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.78%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.12%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.56%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.78%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.78%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.34%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.78%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.56%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.12%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.34%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.12%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.34%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.78%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.47%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.78%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.78%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.78%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_06304151	3300000033	Soil	GGIFDVHVDGSLVFTKSMLGRYPXPDDVIPLVRAKLTG*
F14TC_1009336252	3300000559	Soil	VTGANGIFDVHLDGELVFEKSMLGRYPDPDDVLPLLRERLD*
JGI10215J12807_11417751	3300000881	Soil	VTGDGGIFDVHVDGDLVFEKKMLGRYPDPDDVVPLLREKLGA*
JGI10215J12807_11700974	3300000881	Soil	VTGDGGIFDVHVDGDLVFEKAMLGRYPDPDDVLPLLREKLSA*
JGI11643J12802_122552901	3300000890	Soil	VTGVGGIFDVHVGDELVFTKSMLGRYPDPDDVLPLLRR
JGIcombinedJ13530_1098507312	3300001213	Wetland	VHLDGELVFEKRMLGRYPDPEDVLPLLRERIAAG*
C688J35102_1197729792	3300002568	Soil	VVPGADGIFDVHVGSELVFTKSMLGRYPDPDDVMPLLRPHVVG*
C688J35102_1207017594	3300002568	Soil	DVHLDGELVFEKSMLGRYPDPEDVIPLLGERFGGNSSPS*
Ga0062593_1004522491	3300004114	Soil	VTGVGGIFDVHVGDELVFTKSMLGRYPEPDDVLPLLRPHLASA*
Ga0062589_1003624352	3300004156	Soil	VTGVGGIFDVHVGDELVFTKSMLGRYPKPDDVLPLLRPHLASA*
Ga0062589_1012075452	3300004156	Soil	VTGVGGIFDVHVDGERVFTKSMLGRYPEPDDVLPLLRPHLAA*
Ga0062595_1015163042	3300004479	Soil	VTGVGGIFDVHVGDELVFTKSMLGRYPDPDDVLPLLRRYLAD*
Ga0062592_1017107252	3300004480	Soil	VTGVGGIFDVHVDGERVFTKSMLGRYPEPEDVLPLLRPHLAA*
Ga0062591_1006545541	3300004643	Soil	VEVVTGRDGIFDVHLGDSLVFTKAMLGRYPEPEDVMPLLRSHLAG*
Ga0062591_1015391972	3300004643	Soil	VTGVGGIFDVHVDGERVFTKSMLGRYPEPDDVLPLLRPRL
Ga0062383_101913961	3300004778	Wetland Sediment	GIFDVHVDGELVFWKKMLGRYPDPDDVLPLIRERIGAEVMRSSGP*
Ga0070677_106995441	3300005333	Miscanthus Rhizosphere	VTGDGCIFDVHVDGDLVFEKKMLGRYPDPDDVVPLLREKLGP*
Ga0070710_100239695	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	IFDVHVDDELLFTKSMIGHYPEPDEVLPLLRERIGAELDS*
Ga0070694_1011768372	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VFDVHVGDKLVFEKSMLGRYPDPEDVMPLLRPRLVLTAGPEA*
Ga0066682_104864781	3300005450	Soil	VVPGADGIFDVHVAGDLVFTKAMLGRYPEPDDVMPLLHSQLH*
Ga0070663_1021787081	3300005455	Corn Rhizosphere	VVTGADGIFDVHVRGELVFTKAMLGRYPEPDDVLPLLQPHLR*
Ga0070706_1018811741	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	IPGGDGIFDVHVNDTLVFTKSMIGRYPNPDDVLPLVHARLAA*
Ga0070707_1012843961	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TGVGGIFDVHVGDELVFTKSMLGRYPEPEDVLPLLRPRLAA*
Ga0070699_1014150591	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VVPGADGIFDVHVDGDLVFTKAMLGRYPEPDDVMPLLQSRLRT*
Ga0073909_104905292	3300005526	Surface Soil	LVTGVGGVFDVHVGDELVFEKSMLGRYPDPEDVMPLLRPLLAA*
Ga0070741_100110045	3300005529	Surface Soil	VELVPGVDGVFDVHVGENLVFTKSMLGRYPQPGDVMPLLRPHIGS*
Ga0070679_1006995422	3300005530	Corn Rhizosphere	VELVTGVGGIFDVHVGDDIVFTKSMLGRYPEPEDVMPLLRPRLAP*
Ga0070697_1005513541	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VVPGANGIFDVHVDGDLVFTKAMLGRYPKPDDVMPLLQSRLQT*
Ga0068861_1009518121	3300005719	Switchgrass Rhizosphere	IFDVHLDGELVFTKSMLGRYPDPEDVTPLLRAKLDT*
Ga0068861_1014231912	3300005719	Switchgrass Rhizosphere	VTGDGGIFDVHVDGDLLFAKRMLGRYPDPGDVEPLLRERLGAPVL*
Ga0066903_1007755463	3300005764	Tropical Forest Soil	VHVDGDLVFEKKMLGRYPDPEDVMPLLRERIAGG*
Ga0081455_109473411	3300005937	Tabebuia Heterophylla Rhizosphere	FDVHVDGDLVFEKKMIGRYPEPDDVVPLVKAKFES*
Ga0075422_100130643	3300006196	Populus Rhizosphere	VNGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLREKLDA*
Ga0075425_1017679722	3300006854	Populus Rhizosphere	VVPGADGIFDVHVAGDRVFTKAMLGRYPQPEDVMPLLRSRLDL*
Ga0068865_1012281242	3300006881	Miscanthus Rhizosphere	GGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLRERLG*
Ga0097620_1004497421	3300006931	Switchgrass Rhizosphere	GDGIFDVHVNDTLVFTKSMIGRYPNPDDVLPLVHARLAE*
Ga0074063_121539852	3300006953	Soil	HVHVDGDLVFTKSMLGRYPGPDDVLPLIRSRLSQGRA*
Ga0099830_108629541	3300009088	Vadose Zone Soil	VPGADGIFDVHLGGERVFTKSMLGRYPEPDDVMPLLR
Ga0111539_121967272	3300009094	Populus Rhizosphere	VFDVHVDGDLVFEKSMLGHYPDPDDVLPLVRDKLS*
Ga0105245_120348752	3300009098	Miscanthus Rhizosphere	VTGVGGVFDVHVGDELVFEKSMLGRYPDPEDVMPLLRPHLGT*
Ga0114129_111341174	3300009147	Populus Rhizosphere	GIFDVHVDGDLVFEKAMLGRYPDPDDVLPLLREKLSA*
Ga0105243_111600512	3300009148	Miscanthus Rhizosphere	VTGVGGVFDVHVGDELVFEKSMLGRYPDPDDVMPLLRPRLAA*
Ga0075423_102080421	3300009162	Populus Rhizosphere	IFDVHVDGELVFTKSMLGRYPDPDDVVPLLREKLGG*
Ga0105248_105374013	3300009177	Switchgrass Rhizosphere	DVDVDGERIFFKKMIGRYPQPDDVVPLLRERIGPEVM*
Ga0105237_119598092	3300009545	Corn Rhizosphere	LTGLDDTIVFTKSMIGRYPNPDDVLPLVHARLAE*
Ga0105259_11360481	3300009597	Soil	VTGANGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLREKLGGA*
Ga0126374_107498112	3300009792	Tropical Forest Soil	VHVDETLVFTKSMLGRYPQPDEVTPLLNDQLTAD*
Ga0105068_11066451	3300009836	Groundwater Sand	VTGANGIFDVHLDGDLVFTKSMLGRYPDPDDVIPLLRDQLGAS*
Ga0131077_109419741	3300009873	Wastewater	YDVDLDGERVFTKSMLGRYPEPEEVIPLLQERMGPPVL*
Ga0134066_103582632	3300010364	Grasslands Soil	EVVPGADGIFDVHVGSELVFTKSMLGRYPDPDDVMPLLRPHVVG*
Ga0134124_120216803	3300010397	Terrestrial Soil	GIFDVHLDGDLVFEKSMLGRYPDPEDVLPLLRERM*
Ga0134122_124069311	3300010400	Terrestrial Soil	GGVFDVDVDGERIFFKKMIGRYPQPDDVVPLLRERIGPEVM*
Ga0134122_130425151	3300010400	Terrestrial Soil	GGIFDVHLDGELVFTKSMIRRYPDPDDVMPLLRAALG*
Ga0137313_10542791	3300011403	Soil	VTGADGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLREKLSGA*
Ga0120191_101142972	3300012022	Terrestrial	GIFDVHLDGELVFTKSMLGRYPDPDDVTPLVRDQLGG*
Ga0137374_101114283	3300012204	Vadose Zone Soil	VTGVGGIFDVHVGDELVFTKSMLGRYPEPDDVMPLLRPSLSA*
Ga0137380_107193762	3300012206	Vadose Zone Soil	VVPGADGIFDVHVAGDLVFTKAMLGRYPEPDDVMPLLRSHLH*
Ga0137377_113943452	3300012211	Vadose Zone Soil	VVPGADGIFDVHVAGDLVCTKAMLGRYPEPDDVMPLLRSHLH*
Ga0150985_1008257881	3300012212	Avena Fatua Rhizosphere	VVPGADGIFDVHVGSELVFTKSMLGRYPVPDDVMPLLRPHVVG*
Ga0137372_100203142	3300012350	Vadose Zone Soil	VHVNGELVFTKSMLGRYPQPDEVVPLVRKRLPAA*
Ga0137366_101000592	3300012354	Vadose Zone Soil	VHLNGELVFTKSMLGRYPRPDEVVPLVRKRLAAA*
Ga0137369_104742542	3300012355	Vadose Zone Soil	VHVNGELVFTKSMLGRYPQPDEVVPLVRKRLAAA*
Ga0157288_100590441	3300012901	Soil	GGVFDVHVDDQLVFEKKMIRRYPNPDDVLPRLRAVLGDEVL*
Ga0157289_101842971	3300012903	Soil	VTGVGGIFDVHVGDELVFTKSMLGRYPEPDDVMPLLRPRLVL*
Ga0157297_104245741	3300012914	Soil	NVHMDGELVFTKSMIGRYPQPDDVVPLLRERFGGG*
Ga0153915_120458852	3300012931	Freshwater Wetlands	VFDVHVDGELVFEKRMLGRYPDPDDVLPLIRDRIGPEVMRR*
Ga0164299_101478154	3300012958	Soil	GGDGIFDVHVNDTLVFTKSMIGRYPNPDDVLPLVHARLAE*
Ga0164301_110428182	3300012960	Soil	VFDVHVDGELVFEKKMIGRYPQPDDVLPLIRERL*
Ga0164309_106873092	3300012984	Soil	VVPGADGIFDVHVGTELVFTKSMLGRYPEPEDVMPLLRPHV
Ga0164306_105167653	3300012988	Soil	VFDVHVDGDLVFEKKMLGRYPDPEDVMPLLRLRLG*
Ga0164305_101207362	3300012989	Soil	VPGVDGIFDVHVAGDLVFTKAMLGRYPGPDDVMPLLRSHLHS*
Ga0157369_117464632	3300013105	Corn Rhizosphere	HGVFDVHVDGELVFTKSMLGRYPDPDDVLPLLRPFLG*
Ga0163162_104932373	3300013306	Switchgrass Rhizosphere	FDVHVDGELVFTKSMLGRYPQPDDVVPLMRELLEG*
Ga0157375_112995742	3300013308	Miscanthus Rhizosphere	KGGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLHERFGTG*
Ga0134081_103719581	3300014150	Grasslands Soil	VHVNGDLVFTKSMLGRYPQPDDVVPLLRERLEST*
Ga0163163_100972061	3300014325	Switchgrass Rhizosphere	GDGIFDVHVNDTLVFTKSMIGRYPNTDDVLPLVHARLAA*
Ga0157380_124026171	3300014326	Switchgrass Rhizosphere	VFDVDVDGERIFFKKMIGRYPQPDDVLPLLRERIGPEVL*
Ga0157377_109545392	3300014745	Miscanthus Rhizosphere	DVHVDDQLVFAKQMIRRYPQPDDVLPLLRAVLGDEVL*
Ga0167655_10332062	3300015086	Glacier Forefield Soil	VFDVDLDGERIFFKKMIGRYPQPEDVLPLLRERIGPELL*
Ga0173480_100843106	3300015200	Soil	VTGDHGIFDVHVDGDLVFEKAMIGRYPDPDDVLPLLREKLSA*
Ga0134085_104470561	3300015359	Grasslands Soil	GIFDVHVAGDLVFTKAMIGRYPQPDDVMPLLNSHLHI*
Ga0132258_121140572	3300015371	Arabidopsis Rhizosphere	VAAVEVVPGADGIFDVHVAGDRVFTKAMIGRYPQPEDVMPLLRSRLHV*
Ga0132258_126065155	3300015371	Arabidopsis Rhizosphere	GVFDVHVDGDLVFTKSMLGRYPDPDDVLPLVRERLSS*
Ga0132258_132616332	3300015371	Arabidopsis Rhizosphere	FDVDLDGERIFYKKMIGRYPEPDDVLPLLRERIGPEVL*
Ga0132256_1019922611	3300015372	Arabidopsis Rhizosphere	FDVHVDGRLVFTKSMIGRYPDPDDVLPLVRAHLKN*
Ga0132255_1037838112	3300015374	Arabidopsis Rhizosphere	VFDVHVDGELVFEKKMLGRYPDPEDVMPLLRPRLAG*
Ga0190266_103584572	3300017965	Soil	VTGANGIFDVHVDGELVFTKSMLGRYPDPDDVTPLLGAKLDT
Ga0187822_103917532	3300017994	Freshwater Sediment	VELVPGVDGVFDVHVGENLVFTKSMLGRYPQPGDVMPLLRPHIGS
Ga0184638_12443422	3300018052	Groundwater Sediment	VTGANGIFDVHLDGELVFEKSMLGRYPEPDDVIPLFREKLGG
Ga0190265_119537813	3300018422	Soil	VVTGADGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLREKLGGA
Ga0190270_100100184	3300018469	Soil	VTGADGIFDVHVDGELVFTKSMLGRYPQPDDVLLLLGDKFRA
Ga0190274_105825302	3300018476	Soil	VFDVDVDGDRIFFKKMIGRYPQPDDVLPLLRERIGPEVL
Ga0190274_112185421	3300018476	Soil	VSAVEVVTGVDGIFDVHVGGELVFTKSMLGRYPEPDDVVPLLREKLGA
Ga0190274_139493441	3300018476	Soil	GVFDVDVDGERIFFKKMIGRYPQPDDVLPLLRERIGPEVL
Ga0193738_10793713	3300020020	Soil	VTGADGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLREKLGGA
Ga0210380_105072962	3300021082	Groundwater Sediment	VPGANGIFDVHVDGELVFTKSMLGRYPDPDDVTPLLGAKLDT
Ga0126371_102587832	3300021560	Tropical Forest Soil	VTGVGGVFDVHVDGDLVFEKAMLGRYPDLEDVMPLLRARLAAPRD
Ga0126371_138182041	3300021560	Tropical Forest Soil	DGIFDVHVDGELVFTKSMLGRYPQPDEVMPLLRERLVAG
Ga0247787_10019564	3300022893	Soil	VNGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLRAKLG
Ga0247788_10150932	3300022901	Soil	VNGIFDVHVDGELVFTKSMLGRYPQPDDVVPLLREKLDA
Ga0207642_104854493	3300025899	Miscanthus Rhizosphere	VGGVFDVHVDDELVFTKSMLGRYPVPDDVLPLLRE
Ga0207650_106870641	3300025925	Switchgrass Rhizosphere	GGDGIFDVHVNDTLVFTKSMIGRYPNPDDVLPLVHARLAE
Ga0207640_116914532	3300025981	Corn Rhizosphere	IPGGDGIFDVHVNDTLVFTKSMIGRYPNPDDVLPLVHARLAE
Ga0207640_119068042	3300025981	Corn Rhizosphere	GVGGIFDVHVDGELVFTKSMLGRYPQPDDVMPLLRPAVGA
Ga0207658_117117851	3300025986	Switchgrass Rhizosphere	GDKGIFDVHVDDVLVFTKSMIGGYPEPDDVLPLVRAQLAS
Ga0207675_1003959912	3300026118	Switchgrass Rhizosphere	TGGVFDVHVDDQLVFAKQMIRRYPQPDDVLPLLRAVLGDEVL
Ga0209156_101707932	3300026547	Soil	VVPGADGIFDVHVAGELVFTKAMLGRYPEPDDVMPLLNSHLH
(restricted) Ga0233416_100270223	3300027799	Sediment	SIFAVTLDGELVFEKKMLGRYPDPDDVLPLLREQLG
Ga0268266_123011682	3300028379	Switchgrass Rhizosphere	GVFDVHVDRELVFTKSMLGRYPDPDDVLPLIDPHVD
Ga0247822_104717562	3300028592	Soil	VTGTGGIFDVHVDGERVFEKKLIGRYPQPDDVLPLLAEKLG
Ga0247822_110222191	3300028592	Soil	PEQRENPFDVHVDGALVFTKSMLGRYPDPDDVIPLVRAKLTG
Ga0265322_100854582	3300028654	Rhizosphere	VGGIFDVHVDGDLVFTKSMLGRYPDPDDVMPLLRSRIS
Ga0307313_100702451	3300028715	Soil	DVDGERIFFKKMIGRYPEPEDVLPLLRERIGPEVM
Ga0307498_100481822	3300031170	Soil	VFDVHVGGELVFEKSMLGRYPDPEDVMPLLRARLAA
Ga0265329_102394732	3300031242	Rhizosphere	GTGGIFDVHVGDDLVFTKSMIGRYPEPDDVMPLLRPRLGP
Ga0315290_108284921	3300031834	Sediment	GGIFDVHLDGELVFTKSMLGRYPQPEDVLPLLRERLDSG
Ga0310907_101699531	3300031847	Soil	DKGIFDVHVDDVLVFTKSMIGGYPEPDDVLPLVRAQLAS
Ga0310900_113755982	3300031908	Soil	IFDVHVDGELVFTKSMLGRYPEPDEVVPLVEARLT
Ga0310906_105447402	3300032013	Soil	VTGVGGIFDVNVDDELVFTKSMLGRYPDPDDVLPLLRAKLGP
Ga0315272_104825161	3300032018	Sediment	VDGELVFYKKMLGRYPDPDDVLPLIRERIGPEVMRER
Ga0318506_102943091	3300032052	Soil	GIFDVHVDGDLVFTKSMLGRYPEPDDVVPVLRTKLV
Ga0310890_102661882	3300032075	Soil	GGIFDVHVDGDLVFTKSMLGRYPQPDDVVPLLRAKLG
Ga0315292_111147201	3300032143	Sediment	KGGIFDVHLDGELVFTKSMIGRYPQPDDVVPLLRERLAAG
Ga0335083_100915822	3300032954	Soil	VFDVHVDGELVFTKSMLGRYPQPDDVLPLLQPYLT
Ga0247830_108149451	3300033551	Soil	FDVHVNDTLVFTKSMIGRYPNPDDVLPLVQARLAA
Ga0334961_048350_552_671	3300034143	Sub-Biocrust Soil	VFDVEVDGERLFTKSMLGRYPEPDDVLPRLRPALGDELA
Ga0364929_0153509_160_291	3300034149	Sediment	VTGADGIFDVHLDGELVFTKSMLGRYPQPDDVVPLLREKLGGA
Ga0364941_151302_465_584	3300034417	Sediment	VDGIFDVKVDDELVFTKSMLGRYPQPDDVVPLLREKLAP