Metagenome / Metatranscriptome Family F064778

Overview

Basic Information

• Family ID: F064778
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 128
• Average Sequence Length: 43 residues
• Representative Sequence: MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDL
• Number of Associated Samples: 106
• Number of Associated Scaffolds: 128

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 2.36 %
• % of genes near scaffold ends (potentially truncated): 59.38 %
• % of genes from short scaffolds (< 2000 bps): 87.50 %
• Associated GOLD sequencing projects: 105
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (66.406 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.500 % of family members)
• Environment Ontology (ENVO): Unclassified (22.656 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (46.094 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 5.88%
  β-sheet: 0.00%
  Coil/Unstructured: 94.12%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF04380	BMFP	32.81
PF14693	Ribosomal_TL5_C	25.00
PF01790	LGT	21.88
PF01386	Ribosomal_L25p	10.16
PF02636	Methyltransf_28	4.69
PF01195	Pept_tRNA_hydro	3.12
PF01575	MaoC_dehydratas	0.78
PF06071	YchF-GTPase_C	0.78
PF02578	Cu-oxidase_4	0.78

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG2960	Ubiquinone biosynthesis accessory factor UbiK	Coenzyme transport and metabolism [H]	32.81
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	21.88
COG1825	Ribosomal protein L25 (general stress protein Ctc)	Translation, ribosomal structure and biogenesis [J]	10.16
COG1565	SAM-dependent methyltransferase, MidA family	General function prediction only [R]	4.69
COG0193	Peptidyl-tRNA hydrolase	Translation, ribosomal structure and biogenesis [J]	3.12
COG0012	Ribosome-binding ATPase YchF, GTP1/OBG family	Translation, ribosomal structure and biogenesis [J]	0.78
COG1496	Copper oxidase (laccase) domain	Inorganic ion transport and metabolism [P]	0.78

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.41 %
Unclassified	root	N/A	33.59 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.41 %
Unclassified	root	N/A	33.59 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.41 %
Unclassified	root	N/A	33.59 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.62 %
Unclassified	root	N/A	33.59 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65.62 %
Unclassified	root	N/A	33.59 %

Level 6

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	57.81 %
Unclassified	root	N/A	33.59 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.59 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	24.22 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.41 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.59 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	24.22 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.69 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.59 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	24.22 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.69 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.59 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	20.31 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.69 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	3.91 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000156|NODE_c0727473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7100
3300000597|AF_2010_repII_A1DRAFT_10024244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1656
3300000793|AF_2010_repII_A001DRAFT_10123530	Not Available	541
3300000816|AF_2010_repII_A10DRAFT_1013335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	864
3300001915|JGI24741J21665_1022783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	969
3300002070|JGI24750J21931_1001636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2749
3300003911|JGI25405J52794_10087702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	687
3300003995|Ga0055438_10090870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	851
3300004070|Ga0055488_10032405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1051
3300004798|Ga0058859_10694086	Not Available	504
3300005163|Ga0066823_10063589	Not Available	694
3300005183|Ga0068993_10121073	Not Available	858
3300005204|Ga0068997_10019153	Not Available	1107
3300005204|Ga0068997_10019720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096
3300005218|Ga0068996_10038069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	885
3300005288|Ga0065714_10457582	Not Available	549
3300005293|Ga0065715_10043139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1080
3300005293|Ga0065715_10148517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1758
3300005328|Ga0070676_10015055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4261
3300005329|Ga0070683_100281939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1580
3300005332|Ga0066388_100319133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2199
3300005332|Ga0066388_101259546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1271
3300005332|Ga0066388_105930337	Not Available	617
3300005332|Ga0066388_106347118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	596
3300005332|Ga0066388_107841601	Not Available	534
3300005332|Ga0066388_108346928	Not Available	516
3300005336|Ga0070680_100192344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1719
3300005339|Ga0070660_100172944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1745
3300005339|Ga0070660_101388989	Not Available	596
3300005458|Ga0070681_10590887	Not Available	1024
3300005547|Ga0070693_100132926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1558
3300005764|Ga0066903_102503166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	999
3300005764|Ga0066903_102910258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	928
3300005764|Ga0066903_103380760	Not Available	861
3300005764|Ga0066903_107507613	Not Available	562
3300005843|Ga0068860_101770764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639
3300006057|Ga0075026_100282311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	901
3300006353|Ga0075370_10037259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2734
3300006603|Ga0074064_11588704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	516
3300006914|Ga0075436_100188824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1458
3300006954|Ga0079219_10240252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067
3300009092|Ga0105250_10192420	Not Available	859
3300009545|Ga0105237_10034469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5125
3300010043|Ga0126380_10350919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1074
3300010046|Ga0126384_10130646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1906
3300010046|Ga0126384_11266228	All Organisms → cellular organisms → Bacteria	683
3300010046|Ga0126384_11741999	Not Available	590
3300010362|Ga0126377_10207558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1882
3300010373|Ga0134128_12022750	Not Available	634
3300010376|Ga0126381_100894482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1278
3300010396|Ga0134126_10117535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3253
3300012357|Ga0137384_10525840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	970
3300012477|Ga0157336_1024679	Not Available	567
3300012505|Ga0157339_1059015	Not Available	527
3300012507|Ga0157342_1010613	Not Available	944
3300012515|Ga0157338_1002056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1536
3300012893|Ga0157284_10009966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1653
3300012893|Ga0157284_10336929	Not Available	506
3300012896|Ga0157303_10059837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811
3300012960|Ga0164301_10096623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1684
3300012971|Ga0126369_10343684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1511
3300012971|Ga0126369_10567362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1201
3300012971|Ga0126369_11822808	Not Available	697
3300012985|Ga0164308_10002945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	8915
3300012986|Ga0164304_10329860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1058
3300012987|Ga0164307_10006163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5621
3300012989|Ga0164305_11289925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	638
3300013102|Ga0157371_10393071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1014
3300013105|Ga0157369_10834923	Not Available	946
3300013105|Ga0157369_11078365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	821
3300015077|Ga0173483_10776539	Not Available	550
3300015373|Ga0132257_101563293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	843
3300015374|Ga0132255_100536404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1723
3300017947|Ga0187785_10039796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1731
3300017959|Ga0187779_10679488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	695
3300017974|Ga0187777_10271767	Not Available	1154
3300019361|Ga0173482_10119706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984
3300019361|Ga0173482_10289074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716
3300021344|Ga0193719_10133650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1075
3300022889|Ga0247785_1031962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	619
3300022893|Ga0247787_1005112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1492
3300022901|Ga0247788_1052040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	762
3300023062|Ga0247791_1007119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1649
3300023062|Ga0247791_1024637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	908
3300025900|Ga0207710_10001206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	13122
3300025913|Ga0207695_10199839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1914
3300025921|Ga0207652_10020801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	5408
3300025921|Ga0207652_11078749	Not Available	703
3300025924|Ga0207694_10174373	Not Available	1742
3300025926|Ga0207659_11811461	Not Available	518
3300025938|Ga0207704_10375584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1114
3300025957|Ga0210089_1054237	Not Available	518
3300026067|Ga0207678_10198766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1714
3300026116|Ga0207674_10815083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	900
3300026142|Ga0207698_12107842	Not Available	577
3300026715|Ga0207604_100713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	816
3300026731|Ga0207523_100559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	815
3300026765|Ga0207590_101470	Not Available	555
3300026995|Ga0208761_1021332	Not Available	619
3300027288|Ga0208525_1011681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	968
3300027364|Ga0209967_1001836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2728
3300027474|Ga0207457_101881	Not Available	546
3300027543|Ga0209999_1042789	Not Available	850
3300027775|Ga0209177_10350742	Not Available	578
3300027787|Ga0209074_10115236	Not Available	926
3300028713|Ga0307303_10182497	Not Available	515
3300028755|Ga0307316_10179326	Not Available	760
3300028811|Ga0307292_10214132	Not Available	794
3300028824|Ga0307310_10318910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	759
3300031573|Ga0310915_10000056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	56530
3300031595|Ga0265313_10008643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6735
3300031720|Ga0307469_10839891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	846
3300031751|Ga0318494_10119205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1469
3300031820|Ga0307473_11215134	Not Available	561
3300031846|Ga0318512_10184407	Not Available	1017
3300031854|Ga0310904_10426136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	874
3300031892|Ga0310893_10001989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4864
3300031913|Ga0310891_10018554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1709
3300032017|Ga0310899_10072267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1326
3300032174|Ga0307470_11017366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	660
3300032180|Ga0307471_100740693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1148
3300032205|Ga0307472_100559139	Not Available	1000
3300032205|Ga0307472_100721549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	899
3300032205|Ga0307472_100731126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	894
3300032211|Ga0310896_10318233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	809
3300033433|Ga0326726_10213625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1785
3300033513|Ga0316628_102659287	Not Available	659

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.88%
Host-Associated	Host-Associated	27.34%
Engineered	Engineered	0.78%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.62%
Plants	Host-Associated → Plants	26.56%
Aquatic	Environmental → Aquatic	6.25%
Human	Host-Associated → Human	0.78%
Solid Waste	Engineered → Solid Waste	0.78%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.72%
Marine	Environmental → Aquatic → Marine	5.47%
Sediment	Environmental → Aquatic → Sediment	0.78%
Peat	Environmental → Terrestrial → Peat	0.78%
Digestive System	Host-Associated → Human → Digestive System	0.78%
Roots	Host-Associated → Plants → Roots	0.78%
Grass	Engineered → Solid Waste → Grass	0.78%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.22%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.03%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.47%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.78%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.78%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.78%
Composting	Engineered → Solid Waste → Grass → Composting	0.78%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.16%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.03%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.78%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.78%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.78%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.78%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.03%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.47%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.12%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.34%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.34%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.56%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.78%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.78%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.78%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.78%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental
3300001915	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7	Host-Associated
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental
3300004070	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2	Environmental
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental
3300022893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4	Environmental
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated
3300025957	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 (SPAdes)	Environmental
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated
3300026715	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-A (SPAdes)	Environmental
3300026731	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-10 (SPAdes)	Environmental
3300026765	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-11 (SPAdes)	Environmental
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental
3300027474	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09.2A5-11 (SPAdes)	Environmental
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_07274735	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MEKGGFFAACARGKPPGVPGAANGAGYSGSFPKGQENRADP*
AF_2010_repII_A1DRAFT_100242443	3300000597	Forest Soil	MEKGGFFAACARGKPPGVPGTANGAGYSGSFPKGQENRADP*
AF_2010_repII_A001DRAFT_101235302	3300000793	Forest Soil	MEKGGFFAACARGKPPGVPGTANGAGYNGSFPKGQE
AF_2010_repII_A10DRAFT_10133352	3300000816	Forest Soil	MEKGDFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADP*
JGI24741J21665_10227833	3300001915	Corn Rhizosphere	FSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
JGI24750J21931_10016362	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSXDGRKGQEITDLGR*
JGI25405J52794_100877022	3300003911	Tabebuia Heterophylla Rhizosphere	MEKAAFSAACERGKPPGVPGAANGPGYSDDRRKGQETTDRGR*
Ga0055438_100908703	3300003995	Natural And Restored Wetlands	TNGKGGFSAACERGKPPGVPGAANEAGYSDDGRKGQEITDLGR*
Ga0055488_100324052	3300004070	Natural And Restored Wetlands	MEKAASAACERGKPPGVPGAANEAGYSDDGRKGQEITDLGR*
Ga0058859_106940861	3300004798	Host-Associated	MEKGGFFAACARGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0066823_100635891	3300005163	Soil	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADT*
Ga0068993_101210731	3300005183	Natural And Restored Wetlands	MEKAAFFAARVRGKPPGVPGAANRAGYSGGVRKGQEIRVR
Ga0068997_100191531	3300005204	Natural And Restored Wetlands	MEKAAFFAAGVRGKPPGVPGAANRAGYSGGVRKGQEIRVRP
Ga0068997_100197202	3300005204	Natural And Restored Wetlands	MEKAASAACERGKPPGVPGAANGAGYSEDGRKGQEITDLGR*
Ga0068996_100380692	3300005218	Natural And Restored Wetlands	MEGGFSAACERGKPPGVPGAANGAGYSEDGRKGQEITDLGR*
Ga0065714_104575821	3300005288	Miscanthus Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0065715_100431393	3300005293	Miscanthus Rhizosphere	PMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0065715_101485171	3300005293	Miscanthus Rhizosphere	PSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0070676_100150556	3300005328	Miscanthus Rhizosphere	LNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0070683_1002819391	3300005329	Corn Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0066388_1003191332	3300005332	Tropical Forest Soil	MEKAAFSAACERGKPPGVPGAANGPGYSDGGRKGQETTDQAR*
Ga0066388_1012595462	3300005332	Tropical Forest Soil	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQETTGLGR*
Ga0066388_1059303372	3300005332	Tropical Forest Soil	MEKGGFFAACARGKPPGVPGTANGAGYSGSFPKGQENHADP*
Ga0066388_1063471182	3300005332	Tropical Forest Soil	MEKAAFSAACERGKPPGVPGAANGPGYSDDGRKGQETTDLGR*
Ga0066388_1078416012	3300005332	Tropical Forest Soil	MEKGGFFAACARGKPPGVPGAANGAGYSVSIPKGQENRADP*
Ga0066388_1083469282	3300005332	Tropical Forest Soil	MEKGGFFAACARGKPPGVPGTANGAGYNGSFPKGQENRTDP*
Ga0070680_1001923444	3300005336	Corn Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDGH*
Ga0070660_1001729441	3300005339	Corn Rhizosphere	EKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0070660_1013889892	3300005339	Corn Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDL
Ga0070681_105908872	3300005458	Corn Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGRMTSPQ
Ga0070693_1001329261	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MEKSGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADT*
Ga0066903_1025031662	3300005764	Tropical Forest Soil	MEKGGFFAAYERGKPPGVPGAANGAGYSGSIAKGQEKPADA*
Ga0066903_1029102582	3300005764	Tropical Forest Soil	MEKGGFFADCARGKPPGVPGAANGAGYSGTIRKGQENRPDP*
Ga0066903_1033807601	3300005764	Tropical Forest Soil	MEKAAFSAACERGKPPGVPGAANAAGYSGGGRKEQGTTPLS
Ga0066903_1075076132	3300005764	Tropical Forest Soil	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQESRADP*
Ga0068860_1017707643	3300005843	Switchgrass Rhizosphere	KPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0075026_1002823111	3300006057	Watersheds	MEKGGFLAACARGKPPGVPGAANGAGYSGSIPKGQENRTGH*
Ga0075370_100372594	3300006353	Populus Endosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDDRKGQEIADRSP*
Ga0074064_115887042	3300006603	Soil	MFESSFKPMEKAAFFAAYERGKPPGVPGAANGAGYSGSIPKGQENRADT*
Ga0075436_1001888242	3300006914	Populus Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQETTGLRR*
Ga0079219_102402523	3300006954	Agricultural Soil	MEKAAFSAACERGKPPGVPGTANAAVYSGGSAKGQETGGRRNGR*
Ga0105250_101924201	3300009092	Switchgrass Rhizosphere	MEKSGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADTQSG
Ga0105237_100344695	3300009545	Corn Rhizosphere	MEKGGFFAARARGKPPGVPGAANGAGYSGSIPKGQENRADT*
Ga0126380_103509193	3300010043	Tropical Forest Soil	NPSSKSMEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRPDL*
Ga0126384_101306464	3300010046	Tropical Forest Soil	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQETAQT
Ga0126384_112662281	3300010046	Tropical Forest Soil	ACERGKPPGVPGAANGPGYSDDGRKGQETADLGR*
Ga0126384_117419991	3300010046	Tropical Forest Soil	KGGFFAACARGKPPGVPGAANGAGYSGSIPKGQESRADP*
Ga0126377_102075584	3300010362	Tropical Forest Soil	MEKDGFFAACARGKPPGVPGAANGAGYSGSIPKGQETAQ
Ga0134128_120227503	3300010373	Terrestrial Soil	EKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0126381_1008944822	3300010376	Tropical Forest Soil	MEKGGFFAACERGKPPGVPGAANAAGYSGEGRKGQEIRASWR*
Ga0134126_101175355	3300010396	Terrestrial Soil	MEKGGFFAACARGKPPGVPGAANGAGYSGSLPKGQENRADT*
Ga0137384_105258402	3300012357	Vadose Zone Soil	MFESSFKPMEKAAFFAAYERGKPPGVPGAANGAGYSGGGRKGQEIHKRCR*
Ga0157336_10246792	3300012477	Arabidopsis Rhizosphere	SAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0157339_10590151	3300012505	Arabidopsis Rhizosphere	WTVAMLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0157342_10106132	3300012507	Arabidopsis Rhizosphere	MEKGGFFAACARGKPPGVPGAANGAGYSGGIPKGQENRADT*
Ga0157338_10020563	3300012515	Arabidopsis Rhizosphere	MEKSDFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADT*
Ga0157284_100099662	3300012893	Soil	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLNR*
Ga0157284_103369291	3300012893	Soil	KSMEKAAFSAACERGKPPGVPGAANGAGYSDDDRKGQEIADRSP*
Ga0157303_100598373	3300012896	Soil	LNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0164301_100966234	3300012960	Soil	MEKGGFFAAYARGKPPGVPGAADGAGYSGSIAKGQENRTDP*
Ga0126369_103436841	3300012971	Tropical Forest Soil	AACERGKPPGVPGAANAAGYSGGGRKEQGTTPLSKTV*
Ga0126369_105673621	3300012971	Tropical Forest Soil	KSMEKGGFFAACARGKPPGVPGAANGAVYTGEEGKGQEIRASR*
Ga0126369_118228081	3300012971	Tropical Forest Soil	MEKAAFSAACERGKPPGVPGAANGAGYSGSFPKGQENR
Ga0164308_1000294511	3300012985	Soil	MEKAAFSAACERGKPPGVPGAANGAGYSYDGRKGQEITDLGR*
Ga0164304_103298601	3300012986	Soil	NPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0164307_100061639	3300012987	Soil	SLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0164305_112899251	3300012989	Soil	PMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0157371_103930711	3300013102	Corn Rhizosphere	WTVAMLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0157369_108349232	3300013105	Corn Rhizosphere	MEKGGFFAACARGKPPGVPGAANGAGYSGDGRKGQEIT
Ga0157369_110783651	3300013105	Corn Rhizosphere	MEKAAFSAASERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ*
Ga0173483_107765392	3300015077	Soil	MGKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITD
Ga0132257_1015632933	3300015373	Arabidopsis Rhizosphere	DPSSKSMEKAAFSAACERGKPPGVPGAANGAGYSDDDRKGQEIADQSL*
Ga0132255_1005364044	3300015374	Arabidopsis Rhizosphere	SKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR*
Ga0187785_100397964	3300017947	Tropical Peatland	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADP
Ga0187779_106794882	3300017959	Tropical Peatland	MEKAAFSAARERGKPPGVPGAANAAGYSGGGCKGQETAALTAS
Ga0187777_102717672	3300017974	Tropical Peatland	MEKAAIFAACERGKPPGVPGAANGAVYSGEVCKGQEIKDEAAVMAIQRS
Ga0173482_101197062	3300019361	Soil	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0173482_102890743	3300019361	Soil	LNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0193719_101336503	3300021344	Soil	MEKGGFLAACARGKPPGVPGAANGAGYSGSIPKGQENRTGH
Ga0247785_10319621	3300022889	Soil	SSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0247787_10051122	3300022893	Soil	MEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0247788_10520403	3300022901	Soil	PSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0247791_10071193	3300023062	Soil	MEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEIT
Ga0247791_10246371	3300023062	Soil	SWTVAMLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0207710_100012063	3300025900	Switchgrass Rhizosphere	MEKGGFFAARARGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0207695_101998394	3300025913	Corn Rhizosphere	SAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0207652_100208017	3300025921	Corn Rhizosphere	SKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0207652_110787491	3300025921	Corn Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDGPLMTS
Ga0207694_101743734	3300025924	Corn Rhizosphere	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRAD
Ga0207659_118114612	3300025926	Miscanthus Rhizosphere	KPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0207704_103755842	3300025938	Miscanthus Rhizosphere	MEKSGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0210089_10542371	3300025957	Natural And Restored Wetlands	GKGGFSAACERGKPPGVPGAANGAGYSEDGRKGQEITDLGR
Ga0207678_101987661	3300026067	Corn Rhizosphere	LNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0207674_108150833	3300026116	Corn Rhizosphere	GGFFATCARGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0207698_121078421	3300026142	Corn Rhizosphere	SKPMEKGGFFAARARGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0207604_1007131	3300026715	Soil	VAMLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0207523_1005591	3300026731	Soil	SLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0207590_1014702	3300026765	Soil	MEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITN
Ga0208761_10213321	3300026995	Soil	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADTQSGGVFGRALGPLAGFFGLGF
Ga0208525_10116813	3300027288	Soil	LSKPMEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0209967_10018364	3300027364	Arabidopsis Thaliana Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITGLGR
Ga0208637_10008874	3300027401	Soil	ISWTVAMLNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0207457_1018812	3300027474	Soil	SKPMEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEITNLGRQ
Ga0209999_10427892	3300027543	Arabidopsis Thaliana Rhizosphere	MEKAAFSAACERGKPPGVPGAANGAGYSDDGRKAQEITGLGR
Ga0209177_103507422	3300027775	Agricultural Soil	SWTVAISKSSSKPMEKAAFSAACERGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0209074_101152361	3300027787	Agricultural Soil	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADTQSGGVFGRA
Ga0307303_101824971	3300028713	Soil	MEKAAFFAACVRGKPPGVPGAADGAGYSGGIPKGQENRA
Ga0307316_101793262	3300028755	Soil	MEKGGFLAACARGKPPGVPGAANGAGYSGSIPKGQENRTG
Ga0307292_102141321	3300028811	Soil	MEKGGFLAACARGKPPGVPGAANGAGYSGSIPKGQENR
Ga0307310_103189101	3300028824	Soil	MEKAAFFAACVRGKPPGVPGAADGAGYSGGIPKGQENRAVRSQRVSSG
Ga0310915_1000005632	3300031573	Soil	MEKGGFFAACARGKPPGVPGTANGAGYSGSSPKGQENRADP
Ga0265313_100086431	3300031595	Rhizosphere	MEKAAFSAASNRGKPPGVPGAADGRVYSGGVLKGQ
Ga0307469_108398911	3300031720	Hardwood Forest Soil	KPMEKAAFSAACERGKPPGVPGAANGPGYSDDGRKGQETTDLGR
Ga0318494_101192051	3300031751	Soil	GGFFAACARGKPPGVPGTANGAGYSGSSPKGQENRADP
Ga0307473_112151342	3300031820	Hardwood Forest Soil	SKPMEKAAFSAACERGKPPGVPGAANGPGYSDDGRKGQETRDLGR
Ga0318512_101844071	3300031846	Soil	FFAACARGKPPGVPGTANGAGYSGSSPKGQENRADP
Ga0310904_104261361	3300031854	Soil	SSKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0310893_100019897	3300031892	Soil	MEKAAFSAACERGKPPGVPGAANGAGYSGDGRKGQEI
Ga0310891_100185543	3300031913	Soil	MEKSDFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0310899_100722673	3300032017	Soil	SWTVAILNPSSKPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0307470_110173662	3300032174	Hardwood Forest Soil	MEKAAFSAACERGKPPGVPGAANGAGYSDDGSKGQEITDLGR
Ga0307471_1007406931	3300032180	Hardwood Forest Soil	MEKAALSAAHERGKPPGVLGAANAAGYTGGGGKGQETAIIAQKV
Ga0307472_1005591392	3300032205	Hardwood Forest Soil	MEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADTQSGGLF
Ga0307472_1007215492	3300032205	Hardwood Forest Soil	MLKSSSKPMEKAALSAAHERGKPPGVPGAANAAGYSGGGRKGQETAIIAQKV
Ga0307472_1007311263	3300032205	Hardwood Forest Soil	PMEKGGFFAACARGKPPGVPGAANGAGYSGSIPKGQENRADT
Ga0310896_103182331	3300032211	Soil	KPMEKAAFSAACERGKPPGVPGAANGAGYSDDGRKGQEITDLGR
Ga0326726_102136251	3300033433	Peat Soil	AIVNPSSNPMEKAAFSAACERGKPPGVPGAATGAGYSGGRHKGQENHISGRKRA
Ga0316628_1026592872	3300033513	Soil	MEKAAFSAACERGKPPGVPGAANAPGYSGGGRKGQEIRTDP