Metagenome / Metatranscriptome Family F064694

Basic Information
Family ID	F064694
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	59 residues
Representative Sequence	VTGFGDALQKVAARVPETQMLMVMATDGIPIEKLVVRPDPNLEAVAAEYTTLLRAS
Number of Associated Samples	117
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.97 %
% of genes near scaffold ends (potentially truncated)	99.22 %
% of genes from short scaffolds (< 2000 bps)	96.09 %
Associated GOLD sequencing projects	114
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (94.531 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (9.375 % of family members)
Environment Ontology (ENVO)	Unclassified (28.125 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.594 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.90% β-sheet: 0.00% Coil/Unstructured: 63.10%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF13428	TPR_14	67.19
PF13432	TPR_16	15.62
PF00801	PKD	2.34
PF05137	PilN	0.78
PF00873	ACR_tran	0.78
PF13176	TPR_7	0.78
PF03259	Robl_LC7	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG3166	Type IV pilus assembly protein PilN	Cell motility [N]	1.56
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	0.78

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.53 %
Unclassified	root	N/A	5.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.53 %
Unclassified	root	N/A	5.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.53 %
Unclassified	root	N/A	5.47 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.44 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	17.19 %
Unclassified	root	N/A	5.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.56 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	23.44 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	16.41 %
Unclassified	root	N/A	5.47 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.78 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.44 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	16.41 %
Unclassified	root	N/A	5.47 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.44 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.41 %
Unclassified	root	N/A	5.47 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.78 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_101998896	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300002485\|C687J35088_10193736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	597	Open in IMG/M
3300004113\|Ga0065183_10311624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	721	Open in IMG/M
3300004157\|Ga0062590_101934685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300004463\|Ga0063356_101721633	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300004480\|Ga0062592_102678875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300004643\|Ga0062591_101926036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300005093\|Ga0062594_103250266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300005172\|Ga0066683_10439417	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300005183\|Ga0068993_10270909	Not Available	607	Open in IMG/M
3300005334\|Ga0068869_100542528	Not Available	976	Open in IMG/M
3300005335\|Ga0070666_11464751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300005341\|Ga0070691_10955580	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005353\|Ga0070669_101928017	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300005354\|Ga0070675_102254239	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005406\|Ga0070703_10390700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300005445\|Ga0070708_101687622	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	589	Open in IMG/M
3300005450\|Ga0066682_10734142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300005518\|Ga0070699_100166464	All Organisms → cellular organisms → Bacteria	1953	Open in IMG/M
3300005518\|Ga0070699_100438278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184	Open in IMG/M
3300005536\|Ga0070697_101470941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300005545\|Ga0070695_101225951	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005546\|Ga0070696_100883827	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300005549\|Ga0070704_100123575	All Organisms → cellular organisms → Bacteria	1993	Open in IMG/M
3300005549\|Ga0070704_101445081	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300005598\|Ga0066706_10025890	All Organisms → cellular organisms → Bacteria	3663	Open in IMG/M
3300005616\|Ga0068852_101801580	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005836\|Ga0074470_10880963	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300005844\|Ga0068862_101668149	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300006606\|Ga0074062_12037615	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300006796\|Ga0066665_10909122	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300006844\|Ga0075428_100429667	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300006847\|Ga0075431_101637704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	601	Open in IMG/M
3300006847\|Ga0075431_101839969	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300009038\|Ga0099829_11057284	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300009089\|Ga0099828_11638772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300009091\|Ga0102851_11236772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300009111\|Ga0115026_11359920	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300009137\|Ga0066709_103094268	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300009146\|Ga0105091_10621769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300009147\|Ga0114129_11078568	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300009156\|Ga0111538_10032679	All Organisms → cellular organisms → Bacteria	6736	Open in IMG/M
3300009165\|Ga0105102_10759459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	549	Open in IMG/M
3300009609\|Ga0105347_1357541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300009610\|Ga0105340_1469052	Not Available	563	Open in IMG/M
3300009812\|Ga0105067_1029779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	795	Open in IMG/M
3300009815\|Ga0105070_1040723	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300010301\|Ga0134070_10352030	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300010336\|Ga0134071_10541465	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010336\|Ga0134071_10816221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300010371\|Ga0134125_11313037	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300010397\|Ga0134124_13178667	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300010399\|Ga0134127_13183088	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300011434\|Ga0137464_1205116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	599	Open in IMG/M
3300012207\|Ga0137381_10387960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1218	Open in IMG/M
3300012350\|Ga0137372_10585818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300012356\|Ga0137371_10888146	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012361\|Ga0137360_11403359	Not Available	601	Open in IMG/M
3300012931\|Ga0153915_12889412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300014326\|Ga0157380_10357299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1369	Open in IMG/M
3300014864\|Ga0180068_1057667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	645	Open in IMG/M
3300014968\|Ga0157379_10279656	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300018056\|Ga0184623_10442828	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300018058\|Ga0187766_10831649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	647	Open in IMG/M
3300018060\|Ga0187765_10594904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	713	Open in IMG/M
3300018060\|Ga0187765_10815242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300018063\|Ga0184637_10086330	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300018063\|Ga0184637_10282500	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300018071\|Ga0184618_10226627	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300018082\|Ga0184639_10200455	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300020068\|Ga0184649_1380584	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300021861\|Ga0213853_11547640	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300022534\|Ga0224452_1264357	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
(restricted) 3300024521\|Ga0255056_10027176	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M
3300025165\|Ga0209108_10375278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	701	Open in IMG/M
3300025558\|Ga0210139_1064213	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300025885\|Ga0207653_10398843	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300025918\|Ga0207662_11171146	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300025922\|Ga0207646_10885926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300025933\|Ga0207706_11070059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300025981\|Ga0207640_12143899	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300026118\|Ga0207675_101659798	Not Available	659	Open in IMG/M
3300026463\|Ga0256815_1032723	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300026551\|Ga0209648_10790481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300027713\|Ga0209286_1333909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300027738\|Ga0208989_10242065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	589	Open in IMG/M
3300027846\|Ga0209180_10487793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
(restricted) 3300027872\|Ga0255058_10280314	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300027880\|Ga0209481_10034861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2292	Open in IMG/M
3300027887\|Ga0208980_10397676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	795	Open in IMG/M
3300027902\|Ga0209048_10832579	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300027907\|Ga0207428_10954757	Not Available	604	Open in IMG/M
3300027909\|Ga0209382_10397698	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300027909\|Ga0209382_11765455	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300027909\|Ga0209382_12145308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300028380\|Ga0268265_12277602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300028791\|Ga0307290_10210937	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300028803\|Ga0307281_10237040	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300028878\|Ga0307278_10524424	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300030294\|Ga0311349_11335408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	667	Open in IMG/M
3300031547\|Ga0310887_10862548	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300031547\|Ga0310887_11025644	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031576\|Ga0247727_10206737	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300031716\|Ga0310813_12249772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300031834\|Ga0315290_10300619	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300031892\|Ga0310893_10295335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300031943\|Ga0310885_10351468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300031949\|Ga0214473_10836358	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300031965\|Ga0326597_10229573	All Organisms → cellular organisms → Bacteria	2155	Open in IMG/M
3300031997\|Ga0315278_10433773	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300032157\|Ga0315912_10154541	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300032260\|Ga0316192_10944614	Not Available	577	Open in IMG/M
3300032342\|Ga0315286_12025958	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300032342\|Ga0315286_12226891	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300032770\|Ga0335085_12229020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	550	Open in IMG/M
3300033407\|Ga0214472_11557499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300033413\|Ga0316603_11076125	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300033416\|Ga0316622_100841571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1067	Open in IMG/M
3300033416\|Ga0316622_102015575	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300033418\|Ga0316625_102456880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300033485\|Ga0316626_11888125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300033486\|Ga0316624_11692868	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300033487\|Ga0316630_12122483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300033489\|Ga0299912_10660273	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300033513\|Ga0316628_101514722	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	893	Open in IMG/M
3300034147\|Ga0364925_0345894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	560	Open in IMG/M
3300034151\|Ga0364935_0217030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300034177\|Ga0364932_0079944	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.03%
Host-Associated	Host-Associated	17.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.25%
Aquatic	Environmental → Aquatic	25.78%
Plants	Host-Associated → Plants	17.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.50%
Freshwater	Environmental → Aquatic → Freshwater	10.94%
Sediment	Environmental → Aquatic → Sediment	8.59%
Marine	Environmental → Aquatic → Marine	6.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.47%
Floodplain	Environmental → Terrestrial → Floodplain	2.34%
Peat	Environmental → Terrestrial → Peat	0.78%
Cave	Environmental → Terrestrial → Cave	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.69%
Loam	Environmental → Terrestrial → Soil → Loam	11.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.47%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.69%
Lake	Environmental → Aquatic → Freshwater → Lake	3.12%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.12%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.12%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.34%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.34%
Gulf	Environmental → Aquatic → Marine → Gulf	1.56%
Sand	Environmental → Terrestrial → Soil → Sand	1.56%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.78%
Coastal	Environmental → Aquatic → Marine → Coastal	0.78%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.16%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.47%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.69%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.12%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.12%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.12%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.34%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.34%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.56%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.56%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	1.56%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.56%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.78%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.78%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.78%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.12%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.12%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.34%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.34%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.34%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.34%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.34%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.34%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.56%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.56%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.56%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.56%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.56%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.56%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.78%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.78%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.78%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.78%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.78%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.78%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	0.78%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.78%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.78%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.78%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.78%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002485	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1	Environmental	Open in IMG/M
3300004113	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014864	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231A'_16_10D	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300024521 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026463	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS6	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027872 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032260	Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrow	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1019988962	3300001213	Wetland	VSGFSAALQAVAGKVPETQMLIVMGTDGIPIEKLVIVPDPNLEAVAAEYTTLLRASLLAASDTNLGELHELSVVT
C687J35088_101937362	3300002485	Soil	VPAFADSLREIATRVPETQMVMIIGTDGIPIERLTLRPDPNLEAIAAEYTTLLRASLAA
Ga0065183_103116242	3300004113	Pelagic Marine	VAGFREALQAVADRVPETEVLMVMGTDGIPIDKLAPRPVPDIEAVAAEHTTLLRASLSTASDTG
Ga0062590_1019346851	3300004157	Soil	VESGFTAALKSFAARVPETRLVMIMGTDGIAIEKLAPTPDANLDAVAAEYTTLLRAGLQAARDTGLGP
Ga0063356_1017216332	3300004463	Arabidopsis Thaliana Rhizosphere	LAGFAEALKGVASRVPETYLLMVMGTDGIPIEKLVIRPDPNMEA
Ga0062592_1026788751	3300004480	Soil	LTSFADALKTIAARVPETHVLIVMGTDGIPIDKLVVHPEPNLDAVAAEYTTLLRASLSAAADTGLGDLKEL
Ga0062591_1019260362	3300004643	Soil	VAARVPETQLVMVMGTDGIPIEKLVVRPDANMDAITAEYTTLLRSSVSAAADTGLGDLQELSIVTEKMVAM
Ga0062594_1032502661	3300005093	Soil	VTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPQPNLDAVAA
Ga0066683_104394172	3300005172	Soil	LSGFADALRTIARQAPEAEMLIIMGTDGIPVEKLVVRPDSNLEAVVAE
Ga0068993_102709091	3300005183	Natural And Restored Wetlands	MSIPGFAEALRGVAARVPETELLMVIGTDGIPIEKLTLRADPNMEAVAAEHTTLLRASLAAASDTGLGALQE
Ga0068869_1005425282	3300005334	Miscanthus Rhizosphere	MTAFADALKDVAARVPESEVLMIIGTDGIPIEKLTLRADPNMEAVAAEHTTLLRASLAAASDT
Ga0070666_114647511	3300005335	Switchgrass Rhizosphere	VTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPQPNLDAVAAEYTTLLRASLSAASDTGLGDLKEL
Ga0070691_109555802	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VTGFRDALQKVAARVPETQMLMVMATDGIPIEKLVVRPDPNLEAVAAEYTTLLRAS
Ga0070669_1019280172	3300005353	Switchgrass Rhizosphere	VTGFGDALQKVAARVPETQMLMVMATDGIPIEKLVVRPDPNQEVVAAEYTSLLRASASTASDTGLG
Ga0070675_1022542391	3300005354	Miscanthus Rhizosphere	VADFNETLRLIAARVPEAQLLLVMATDGIPVAKLVLRPDPNLEAVAAEYTALLRASVSAASDTGLG
Ga0070703_103907002	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VTAVPAFGEALRVISEKVPETRVLMIMGTDGIPIEKLVVRPDPNVEAVAAEYTTLLRASVSAAA
Ga0070708_1016876221	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSTFADTLKQVAARVPETQLLIVMGTDGIPIEKLVVRPAANLEAVAAEYTSLLKSGVAVAADTGLGQLK
Ga0066682_107341422	3300005450	Soil	VTAVPAFGEALRTISEKVPETRVLMIMGTDGIPIEKLVVRPDPNVEAV
Ga0070699_1001664643	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVHPEPNLDAVAAEYTTLLRAS
Ga0070699_1004382782	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAGFAEALKTIAARVPETQVLIVMGTDGIPIDKLVVRPAPNLDAVAAEYTTLLRAS
Ga0070697_1014709412	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTAVPAFGEALRVISEKVPETRVLMIMGTDGIPIEKLVVRPDPNVEAVAAEYTTLLRAS
Ga0070695_1012259512	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VTAFADTLKQVAARVPETQLLIVMGTDGIPIEKLVVHPASNLEAVAAEYTSLLK
Ga0070696_1008838272	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LAGFAEALKGVASRVPETYLLMVMGTDGIPIEKLVIRPDPNMEAVAAEYTTLLR
Ga0070704_1001235753	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSSFSDALKKVASRVPETQMLIVMAVDGIPIEKLIVRPDPDLEAIAAEYT
Ga0070704_1014450811	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VASFSEVLHTISKRIPEIQVVMIMGTDGIPIDKLVVRQAANMDAVAAEYTTLLRASVSAATD
Ga0066706_100258905	3300005598	Soil	VASFSDTLKQVAARVPETQLLIVMGTDGIPIEKLVVRPAANLEAVAAEYTSLLKSGVA
Ga0068852_1018015802	3300005616	Corn Rhizosphere	MSGFSDALKKVAARVPETQMVIVMASDGIPIEKLIVRPDPNLEAVAAE
Ga0074470_108809632	3300005836	Sediment (Intertidal)	VPAFADSLKDVAARVPETQVLMLMGTDGIPIERLVVRPDANLEAVAAEFTTLLRASVSA
Ga0068862_1016681492	3300005844	Switchgrass Rhizosphere	VADFNETLRNIAARVPEAQLLLVMATDGIPVARLVLRPDPNLEAVAAEYTALLRASVSAASDT
Ga0074062_120376151	3300006606	Soil	VPVFAESLREVAARVPETQVLMLMGTDGIPIERLVVRPDANLEAVAAEFTTLLRASVSAS
Ga0066665_109091221	3300006796	Soil	VTAFADTLKQVAARVPETQVLIVMGTDGIPIEKLVVRPASNLESVAAEYTALLKSGVAVAGDTGLGLAV
Ga0075428_1004296671	3300006844	Populus Rhizosphere	MSLPAFAEVLKDVAGRVPESELLMVIGTDGIPIEKLTLRVDPNMEAVAAEHTTLLRASLAAAADTGL
Ga0075431_1016377042	3300006847	Populus Rhizosphere	VTGFAETLRKVAQRVPESQMLMVMGTDGIPIEKLVILPDPNMEAVAAEYTSLLRASLSAAADTG
Ga0075431_1018399691	3300006847	Populus Rhizosphere	MSGFSDALKRVAARVPETQMLIVMASDGIPIEKLIVRPDPDLEAVAAEYTTLL
Ga0099829_110572842	3300009038	Vadose Zone Soil	MIMAGFAEALKTIAARVPETQVLIVMGTDGIPIDKLVVRPAPNLDAVAAEYTT
Ga0099828_116387723	3300009089	Vadose Zone Soil	LTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPEPNLDAVAAEYT
Ga0102851_112367721	3300009091	Freshwater Wetlands	VSSFSDALRAVAVRVPEAEAIMIIGTDGIPIEKLMLRPDPNLEAVAAEHTTL
Ga0115026_113599202	3300009111	Wetland	VSSFSDALRAVAVRVPEAEAIMVIGTDGIPIEKLMLRPDPNLEAVAAEHT
Ga0066709_1030942681	3300009137	Grasslands Soil	LSGFADALRTIARQAPEAEMLIIMGTDGIPVEKLVVRPDSNLEAVVA*
Ga0105091_106217692	3300009146	Freshwater Sediment	MSVGAFSDALHEVAGRVPETEVLMIIGTDGIPIEKLSVRPDPNMDAVAAEYTTLL
Ga0114129_110785682	3300009147	Populus Rhizosphere	MSGFSDALKKVAARVPETQMLIVMASDGIPIEKLIVRPDPDLEAVAAEYTTLLRASSN
Ga0111538_100326791	3300009156	Populus Rhizosphere	MTAFAVALKDVAARVPESEVLMIIGTDGIPIEKLTLRADPNMEA
Ga0105102_107594592	3300009165	Freshwater Sediment	MTANAFADALRRVAGRVPESEVLMIIGTDGIPIEKLMIRPDPNMEAVAAEHTTLLRASLAAAEDTGLGALQE
Ga0105347_13575411	3300009609	Soil	VTAVPAFGEALRIISLRVPETQMVMIMGTDGIPIEKLIIRPDPNLEAVAAEYTTL
Ga0105340_14690521	3300009610	Soil	MAAFADVLKRVASRIPETELLMIIGTDGIPIEKLTIRADPNMEAIAAEHTTLLRASLAAAADTGLGALS
Ga0105067_10297792	3300009812	Groundwater Sand	MSAVPSFAAVLQGISARVPETQVVMIMGTDGIPIEKLVVRPDPNLEAVAAEYTTLLRASVSAASDT
Ga0105070_10407232	3300009815	Groundwater Sand	MSALPGFAAVLQDISQRVPETQVVMIMGTDGIPIEKLVVRPDPNLEAVAAEY
Ga0134070_103520302	3300010301	Grasslands Soil	VSAFSDTLKQVAARVPETQLLIVMGTDGIPIEKLVVRPAANLEAVAAEFT
Ga0134071_105414651	3300010336	Grasslands Soil	VSAFSDTLKQVAARVPETQLLIVMGTDGIPIEKLVVRPAANLEAVAAEFTSLLKSGVAVAADTG
Ga0134071_108162212	3300010336	Grasslands Soil	LTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPEPNLDAVAAEYTTLLRASLSAASDT
Ga0134125_113130371	3300010371	Terrestrial Soil	VTAFADTLKQVAARVPETQLLIVMGTDGIPIEKLVVHSASNLEAVAAEYTSLLKSGVAVAGDTGLGQLKE
Ga0134124_131786672	3300010397	Terrestrial Soil	VTAFADTLKQVAARVPETQLLIVMGTDGIPIEKLVVHSASNLEAVAAEYTSLLKSGVAVAGDTGLG
Ga0134127_131830882	3300010399	Terrestrial Soil	VTGFRDALQKVAARVPETQMLRVMATDGIPIEKLVVRPDPNLESVAAEYTTLLRA
Ga0137464_12051162	3300011434	Soil	MSAFSQTLEAIAARVPETQMVMIMGTDGIPIERLVVRPDPNLEAVAAEYTTLLRASVSAA
Ga0137381_103879601	3300012207	Vadose Zone Soil	VTVVPAFGEALRSISQKVPETRVLMIMGTDGIPIEKLVVRADPNVEAVAAEYTTLLRASVSAAADTGLGD
Ga0137372_105858181	3300012350	Vadose Zone Soil	VTVVPAFGEALRTISQKVPETRVLMIMGTDGIPIEKLVVRADPNVEAVAAEYTTLLRASVSAAADTGLGDLTEL
Ga0137371_108881461	3300012356	Vadose Zone Soil	VSTFSDTLKQVAARVPETQLLIVMGTDGIPIEKLVVRPAAHLDAVAAEFT
Ga0137360_114033593	3300012361	Vadose Zone Soil	MIMAGFAEALKTIAARVPETQVLIVMGTDGIPIDKLVVRPAPNLDAVAAEYTTLLRASLSAAADTGLGELKELTIV
Ga0153915_128894121	3300012931	Freshwater Wetlands	MNVAAFADALKEVASRVPETGVLMIIGTDGIPIEKLTIRPDPNMEAVAAEYT
Ga0157380_103572992	3300014326	Switchgrass Rhizosphere	VTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVRHADANLEAVAAEYTTLLRASLL
Ga0180068_10576671	3300014864	Soil	MTVSAFADALKGVASRVPETEALMIIGTDGIPIEKLMLRPDPNMEAVAAEYTTLLRASLA
Ga0157379_102796562	3300014968	Switchgrass Rhizosphere	VAVFADSLRSVAARVPETQVLMLMGTDGIPIERLVVRPDANLEAVAAEFTTLLRASVSAAGDTGLGALLELC
Ga0184623_104428281	3300018056	Groundwater Sediment	LTAFADTLKQVAARVPETQVLIVMGIDGIPIEKLVLRPAANLEAVAAEYTSLLKSGVAVAGDTGLGQLKE
Ga0187766_108316491	3300018058	Tropical Peatland	VSVFAEALQAVARRVPETEVLMIIGTDGIPIEKLMVRPDPNMEAVAAEHTTLLRAGLSAAVDTGLG
Ga0187765_105949042	3300018060	Tropical Peatland	VSVFAEALQAVARKVPETEVLMIIGTDGIPIEKLMVRPDPNMEAVAAEHTTLLRAGLSAAVDTGLGPLQELAIT
Ga0187765_108152421	3300018060	Tropical Peatland	MSAFAEALQAVARRVPETETLMIIGTDGIPIEKLIVRPDANMEAVAAEHTTLLRAG
Ga0184637_100863301	3300018063	Groundwater Sediment	MTRFAQALRTIAARVPETQVLIIMGTDGIPIEKLVLNPDPNLEAVAAEYTAL
Ga0184637_102825001	3300018063	Groundwater Sediment	VAAFAEALRAIAAKVPETQLVMIMGTDGIPIERLVVRPDPNLEAVAAEYTTLLRA
Ga0184618_102266271	3300018071	Groundwater Sediment	VSAFSDTLKQVAARVPETQLLIVMGTDGIPIEKLVVRPAPNLEAVAAEFTSL
Ga0184639_102004552	3300018082	Groundwater Sediment	MSLPAFAEALRGVARHVPESELLMVIGTDGIPIEKLTVRADPNMEAVAAEHTMLLRA
Ga0184649_13805841	3300020068	Groundwater Sediment	LAGFTDALKRIAATVPETEVLMIMGTDGIPIEKLLVKPQANMEAVAAEYTTLLRASVSAAGDTGL
Ga0213853_115476401	3300021861	Watersheds	VGFASVLRGVAERVPETQVLMIMGTDGIPIERLIVRPDPNLEAVAAEYTTLLRASVST
Ga0224452_12643572	3300022534	Groundwater Sediment	LTAFADTLKQVAARVPETQVLIVMGTDGIPIEKLVLRPAPNLEAVAAEYTSLLKSGVAVA
(restricted) Ga0255056_100271763	3300024521	Seawater	VATFADALKGIASRVPEAEVLMIIGTDGIPIDKLTVRPNADVEAVA
Ga0209108_103752782	3300025165	Soil	MTPVPAFADSLREIATRVPETQMVMIIGTDGIPIERLTLRPDPNLEAIAAEYTTLLR
Ga0210139_10642131	3300025558	Natural And Restored Wetlands	VAGFAESLKKIASRVPETQVLMIMGTDGIPIERLVLHPQANMEAVAAEYTTLLRASVS
Ga0207653_103988432	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSSFSDALKKVASRVPETQMLIVMAVDGIPIEKLIVRPDPDLEAIAAEYTTLLRASSNTASDTGLGALRELSVVTE
Ga0207662_111711461	3300025918	Switchgrass Rhizosphere	VADFNETLRLIAARVPEAQLLLVMATDGIPVAKLVLRPDPNLEAVAAEYTALL
Ga0207646_108859262	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPEPNLDAVAAEYTTLLRASLSAASDTGLGDL
Ga0207706_110700591	3300025933	Corn Rhizosphere	LADFMDTLRVVAARVPEAQLLLVMATDGIPVAKLVVRPDPNLEAVAAEYTALLRASVSAAGDTGMGDLREMCVV
Ga0207640_121438991	3300025981	Corn Rhizosphere	VTGFGDALQKVAARVPETQMLMVMATDGIPIEKLVVRPDPNLEAVAAEYTTLLRAS
Ga0207675_1016597981	3300026118	Switchgrass Rhizosphere	MTAFADALKDVAARVPESEVLMIIGTDGIPIEKLTLRADPNMEAVAAEHTTLLRASLAAASDTGL
Ga0256815_10327232	3300026463	Sediment	MSVGAFSDALHQVASRVPETEVLMIIGIDGIPIEKLAVRPDPNMDAVA
Ga0209648_107904811	3300026551	Grasslands Soil	LTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPEPNLDAVAAEYTTLLRASLSAASDTGLGDLKEL
Ga0209286_13339091	3300027713	Freshwater Sediment	MSVSAFADALKGVASRVPETEALMIIGTDGIPIEKLMLRPDPNMEAVAAEYTTLLRASLAASADTG
Ga0208989_102420652	3300027738	Forest Soil	LTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPEPNLDAVAAEYTTLLRA
Ga0209180_104877931	3300027846	Vadose Zone Soil	MIMAGFAEALKTIAARVPETQVLIVMGTDGIPIDKLVVRPAPNLDAVAAEYTTMLRA
(restricted) Ga0255058_102803141	3300027872	Seawater	VATFADALKGIASRVPEAEVLMIIGTDGIPIDKLIVRPNADVEAVAAEHTTLL
Ga0209481_100348613	3300027880	Populus Rhizosphere	MSGFSDALKKVAARVPETQMLIVMASDGIPIEKLIVRPDPDLEAVAAEY
Ga0208980_103976761	3300027887	Wetland	VTAFADALKGVARRVPETEALMVIGTDGIPIEKLMIRPDPNMEAVAAEYTTLLRASLAASTDTGLGSLQE
Ga0209048_108325792	3300027902	Freshwater Lake Sediment	MTVGAFAEALEGVARTVPETEVLMIIGTDGIPIEKLLVRPDPNMEAVAAE
Ga0207428_109547571	3300027907	Populus Rhizosphere	MTAFAVALKDVAARVPESEVLMIIGTDGIPIEKLTLRADPNMEAVAAEHTTLLRASLAA
Ga0209382_103976982	3300027909	Populus Rhizosphere	LTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPEPNLDAVAAEYTTLLRASLSAAADTG
Ga0209382_117654551	3300027909	Populus Rhizosphere	MVSGFTEALKSFAARVPETQLVMIMGTDGIAIEKLSPKPDANLDAVAAEYTTLLRAGLQAARDTGLGPL
Ga0209382_121453082	3300027909	Populus Rhizosphere	VTGFAETLRKVAQRVPESQMLMVMGTDGIPIEKLVILPDPNMEAVAAEYTSLLRASLS
Ga0268265_122776021	3300028380	Switchgrass Rhizosphere	VTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPQPNLDAVAAEYTTLLRASLS
Ga0307290_102109372	3300028791	Soil	VSAFSDTLKQVAARVPETQLLIVMGTDGIPIEKLVVRPAPNLEAVAAEFTSLLKSGVAVAADTG
Ga0307281_102370401	3300028803	Soil	VAGFAEALRAIAAKVPETQLVMIMGTDGIPIERLVVRPDPNLEAVAAEYTTLLRAS
Ga0307278_105244242	3300028878	Soil	VSGFGEALQRVAARVPETQMLIVMATDGIPIEKLVVRPDPDMEAVAAEYTTLLRASVSAASDTGLGALQELSV
Ga0311349_113354082	3300030294	Fen	MSVSSFSDALAGVARRVPEIEIVMIIGTDGIPIEKLSVRPDPNMEAVAAELTTLLRASLSAA
Ga0310887_108625482	3300031547	Soil	VADFNETLRNIAAKVPEAQLLLVMATDGIPVAKLVLRPDPNLEAVAAEYTALLRASVSAAGDTGLGDLHEL
Ga0310887_110256441	3300031547	Soil	MSSFSDALKKVASRVPETQMLIVMAVDGIPIEKLIVRPDPDLEAIAAEYTTLLRASSNTA
Ga0247727_102067371	3300031576	Biofilm	MPAFAEVLRGVASRVPETEVLMIIGTDGIPIEKLTLRADPNMEAVAAEHTTLLRASLAAAAD
Ga0310813_122497721	3300031716	Soil	LTGFADALKTNAARVPETHVLIVMGTDGIPIDKLVVHPEPNLDAVAAEYTTLLRASLSAASDTGLGDL
Ga0315290_103006191	3300031834	Sediment	VGAFADALKGVASRVPETEILMIIGTDGIPIEKLMIRPDPNMEAVAAEYTTLLRASVAASADTGLGNLEELAIT
Ga0310893_102953351	3300031892	Soil	VTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPQPNLDAVAAEYTTLLRASLSAA
Ga0310885_103514681	3300031943	Soil	VTGFADALKTIAARVPETHVLIVMGTDGIPIDKLVVRPQPNLDAVAAEYTTLLRASLSAASDTGL
Ga0214473_108363582	3300031949	Soil	VSGFTDALHAFASRVPETRLVMIMGTDGIAIERLAPQPDASLDAVAAEYTTLLRASLQAARDTGLGQLQ
Ga0326597_102295731	3300031965	Soil	MTRFAQALRTIAARVPETQVLIIMGTDGIPIEKLVLNPDPNLEAVAAEYTALLRASVSAAGDTGLGD
Ga0315278_104337731	3300031997	Sediment	VGAFADALKGVASRVPETEVLMIIGTDGIPIEKLMLRPDPNMEAVAAEYTTLLRASLAASAD
Ga0315912_101545411	3300032157	Soil	LAIFAETLRQAATRVPEAQVVMLMGTDGIPIDRFVSRADANLEAVAAEFTTLLRASV
Ga0316192_109446141	3300032260	Worm Burrow	VAGFLEVLRGVARRVPESEVLMVIGTDGIPIEKLAIQAVPEIDAVAAEHTTLLRASLSTASDTGLGRLQ
Ga0315286_120259581	3300032342	Sediment	MTVGAFADALKGVASRVPETEVLMIIGTDGIPIEKLMIRPDPNMEAVAA
Ga0315286_122268912	3300032342	Sediment	MTVGAFADALKGVASRVPETEVLMIIGTDGIPIEKLMIRPNPNMEAVAA
Ga0335085_122290201	3300032770	Soil	VSAFGEALAGVARRVPETEVVMIIGTDGIPIEKLVIRPDPNMEAVAAEHTTLLRASLSAASDTGLG
Ga0214472_115574991	3300033407	Soil	VTGFSEALKTIAARVPETQVLIVMGTDGIPIEKLVVRPAPNLEAVAA
Ga0316603_110761251	3300033413	Soil	VTPFADALAAVVRRVPETQVLMIIGTDGIPIEKLMVRPDPNMEAVAAEHTT
Ga0316622_1008415711	3300033416	Soil	MTVGAFAEALQAVARRVPETEVLMVIGTDGIPVEKLLIRPDPNMEAVAAEYTTLL
Ga0316622_1020155752	3300033416	Soil	VAAFLDALRAVASRVPETEVLMVIGTDGIPIEKLMIHPDPNMEAVAA
Ga0316625_1024568802	3300033418	Soil	MTANAFADALRRVAGRVPESEVLMIIGTDGIPIEKLMIRPDPNMEAVA
Ga0316626_118881251	3300033485	Soil	MSVAAFAEALREVATRVPETEVLMIIGTDGIPIEKLTIRPDPNMEAVAAEYTLLLRASLAASV
Ga0316624_116928682	3300033486	Soil	VAAFTKALEDVARRVPETEVLMIIGTDGIPIERLVVRADPNIEA
Ga0316630_121224832	3300033487	Soil	VTPFADALEAVVRRVPETQVLMIIGTDGIPIEKLTIRPDPNMEAVA
Ga0299912_106602732	3300033489	Soil	MTLPAFAEVLERVAGRVPETEVLMVIGTDGIPIEKLTVRANPNMEAVAAEHTTLLRASLAAAADTGLGALQELAIT
Ga0316628_1015147222	3300033513	Soil	MNVAAFADALKEVASRVPETGVLMIIGTDGIPIEKLTIRPDPNMEAVAAEY
Ga0364925_0345894_377_559	3300034147	Sediment	MSGVPGFAAVLQEISARVPETQVVMIMGTDGIPIEKLVVRPDPNLEAVAAEYTTLLRASV
Ga0364935_0217030_470_616	3300034151	Sediment	MSTFTLTLESIAARVPETQMVMIMGTDGIPIERLVVRPDPNLEAVAAEY
Ga0364932_0079944_1_219	3300034177	Sediment	MSLPAFAEALRGVAGHVPESELLMVIGTDGIPIEKLTLRADPNMEAVAAEHTTLLRASLAAAADTGLGALQEL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters