Metagenome / Metatranscriptome Family F064546

Basic Information
Family ID	F064546
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	42 residues
Representative Sequence	DPDIRKEFEAALAREGVASRMNPEFYQRPPAEGEVVMGDVM
Number of Associated Samples	111
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.22 %
% of genes from short scaffolds (< 2000 bps)	94.53 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Most Common Taxonomy
Group	Bacteria (80.469 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.875 % of family members)
Environment Ontology (ENVO)	Unclassified (22.656 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.094 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.64% β-sheet: 0.00% Coil/Unstructured: 75.36%
Feature Viewer

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Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF01717	Meth_synt_2	28.12
PF00691	OmpA	10.94
PF01977	UbiD	6.25
PF03401	TctC	5.47
PF02518	HATPase_c	1.56
PF09585	Lin0512_fam	1.56
PF05685	Uma2	1.56
PF02653	BPD_transp_2	0.78
PF10431	ClpB_D2-small	0.78
PF07730	HisKA_3	0.78
PF00881	Nitroreductase	0.78
PF07883	Cupin_2	0.78
PF01208	URO-D	0.78
PF04909	Amidohydro_2	0.78
PF05150	Legionella_OMP	0.78
PF01075	Glyco_transf_9	0.78
PF00528	BPD_transp_1	0.78
PF01315	Ald_Xan_dh_C	0.78
PF07724	AAA_2	0.78
PF02371	Transposase_20	0.78
PF05899	Cupin_3	0.78
PF12705	PDDEXK_1	0.78
PF04055	Radical_SAM	0.78
PF13432	TPR_16	0.78
PF13561	adh_short_C2	0.78
PF00072	Response_reg	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	28.12
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	6.25
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.47
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	1.56
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.78
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.78
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.78
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.78
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.78
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.25 %
Unclassified	root	N/A	18.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.47 %
Unclassified	root	N/A	18.75 %
Viruses	superkingdom	All Organisms → Viruses	0.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.47 %
Unclassified	root	N/A	18.75 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.78 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.94 %
Unclassified	root	N/A	18.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.56 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.78 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.75 %
Unclassified	root	N/A	18.75 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.56 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.78 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	24.22 %
Unclassified	root	N/A	18.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.84 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.34 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.56 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.78 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	18.75 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.12 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.34 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.56 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.78 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.78 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	18.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.12 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.56 %
Siphoviridae sp. ctwzt2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctwzt2	0.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.78 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.78 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.78 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	18.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.12 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.56 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.78 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.78 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.78 %
Siphoviridae sp. ctwzt2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctwzt2	0.78 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	24.22 %
Unclassified	root	N/A	18.75 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.12 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.56 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.78 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.78 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.78 %
Siphoviridae sp. ctwzt2	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctwzt2	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2044078001\|ZMR_F548DK202GRL3Y	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300001661\|JGI12053J15887_10590831	Not Available	528	Open in IMG/M
3300005363\|Ga0008090_10113445	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005435\|Ga0070714_101881814	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300005542\|Ga0070732_10415958	All Organisms → cellular organisms → Bacteria → Proteobacteria	812	Open in IMG/M
3300005712\|Ga0070764_10859297	Not Available	567	Open in IMG/M
3300005764\|Ga0066903_100085347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4154	Open in IMG/M
3300005764\|Ga0066903_100703521	All Organisms → cellular organisms → Bacteria → Proteobacteria	1782	Open in IMG/M
3300005764\|Ga0066903_108229683	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300006052\|Ga0075029_101329693	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300006162\|Ga0075030_100368237	All Organisms → cellular organisms → Bacteria → Proteobacteria	1146	Open in IMG/M
3300006796\|Ga0066665_11462562	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006853\|Ga0075420_101368392	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300006865\|Ga0073934_10702794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300007076\|Ga0075435_100610570	Not Available	946	Open in IMG/M
3300009038\|Ga0099829_11668606	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300009088\|Ga0099830_10584128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	916	Open in IMG/M
3300009090\|Ga0099827_10252601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1482	Open in IMG/M
3300009100\|Ga0075418_11948051	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300009137\|Ga0066709_100362676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1996	Open in IMG/M
3300009147\|Ga0114129_12037430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	693	Open in IMG/M
3300009792\|Ga0126374_11083952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300009792\|Ga0126374_11312080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300010045\|Ga0126311_10085875	All Organisms → cellular organisms → Bacteria → Proteobacteria	2126	Open in IMG/M
3300010359\|Ga0126376_10804696	Not Available	918	Open in IMG/M
3300010359\|Ga0126376_11722338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	662	Open in IMG/M
3300010360\|Ga0126372_11236785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	773	Open in IMG/M
3300010362\|Ga0126377_11210030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	826	Open in IMG/M
3300010362\|Ga0126377_11489896	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300010362\|Ga0126377_13383539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	516	Open in IMG/M
3300010362\|Ga0126377_13618566	Not Available	500	Open in IMG/M
3300010366\|Ga0126379_10383218	Not Available	1448	Open in IMG/M
3300010366\|Ga0126379_12197410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300010376\|Ga0126381_102337803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300010376\|Ga0126381_102948773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300010398\|Ga0126383_11882031	Not Available	686	Open in IMG/M
3300010398\|Ga0126383_12105953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	651	Open in IMG/M
3300010401\|Ga0134121_11204604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300010403\|Ga0134123_11757153	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300011120\|Ga0150983_15872468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1694	Open in IMG/M
3300012189\|Ga0137388_10835818	All Organisms → cellular organisms → Bacteria → Proteobacteria	853	Open in IMG/M
3300012189\|Ga0137388_11734230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300012199\|Ga0137383_10758361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	708	Open in IMG/M
3300012205\|Ga0137362_10802941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	806	Open in IMG/M
3300012208\|Ga0137376_11206840	Not Available	646	Open in IMG/M
3300012212\|Ga0150985_117773192	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300012361\|Ga0137360_11728205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300012392\|Ga0134043_1284407	Not Available	521	Open in IMG/M
3300012931\|Ga0153915_12952738	Not Available	554	Open in IMG/M
3300012951\|Ga0164300_10249598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	900	Open in IMG/M
3300012971\|Ga0126369_10419981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1380	Open in IMG/M
3300012971\|Ga0126369_12122671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	649	Open in IMG/M
3300012989\|Ga0164305_11154586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300014166\|Ga0134079_10417231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300014168\|Ga0181534_10795503	Not Available	559	Open in IMG/M
3300014200\|Ga0181526_10108766	Not Available	1773	Open in IMG/M
3300014325\|Ga0163163_13309338	Not Available	502	Open in IMG/M
3300015242\|Ga0137412_11058516	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300015245\|Ga0137409_10378500	All Organisms → cellular organisms → Bacteria → Proteobacteria	1229	Open in IMG/M
3300015245\|Ga0137409_11490491	Not Available	524	Open in IMG/M
3300015264\|Ga0137403_10965945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	700	Open in IMG/M
3300016270\|Ga0182036_11698753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	533	Open in IMG/M
3300016357\|Ga0182032_10884370	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300017965\|Ga0190266_10545226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300018062\|Ga0187784_10412698	Not Available	1091	Open in IMG/M
3300018422\|Ga0190265_11350216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	829	Open in IMG/M
3300020016\|Ga0193696_1062455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	976	Open in IMG/M
3300020583\|Ga0210401_10648650	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300021377\|Ga0213874_10231611	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300021401\|Ga0210393_10902493	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300021402\|Ga0210385_10335022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1127	Open in IMG/M
3300021402\|Ga0210385_10726810	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctwzt2	760	Open in IMG/M
3300021420\|Ga0210394_10817066	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300021420\|Ga0210394_11218607	Not Available	646	Open in IMG/M
3300021479\|Ga0210410_10483916	Not Available	1106	Open in IMG/M
3300024347\|Ga0179591_1076023	All Organisms → cellular organisms → Bacteria → Proteobacteria	2903	Open in IMG/M
3300025457\|Ga0208850_1078813	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300025862\|Ga0209483_1166503	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300025927\|Ga0207687_11804059	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300025929\|Ga0207664_11526553	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300025936\|Ga0207670_10686209	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300026067\|Ga0207678_10399888	All Organisms → cellular organisms → Bacteria → Proteobacteria	1189	Open in IMG/M
3300026088\|Ga0207641_11966143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300027663\|Ga0208990_1089155	Not Available	868	Open in IMG/M
3300027671\|Ga0209588_1179996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300027748\|Ga0209689_1156030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300027882\|Ga0209590_10267103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1094	Open in IMG/M
3300027895\|Ga0209624_10850704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	597	Open in IMG/M
3300027903\|Ga0209488_10067217	All Organisms → cellular organisms → Bacteria → Proteobacteria	2654	Open in IMG/M
3300027903\|Ga0209488_10200018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1505	Open in IMG/M
3300027961\|Ga0209853_1148835	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300028771\|Ga0307320_10061954	Not Available	1391	Open in IMG/M
3300028791\|Ga0307290_10023788	Not Available	2148	Open in IMG/M
3300028796\|Ga0307287_10060753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1400	Open in IMG/M
3300028884\|Ga0307308_10404544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	654	Open in IMG/M
3300028906\|Ga0308309_10821305	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300030990\|Ga0308178_1078171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	668	Open in IMG/M
3300031198\|Ga0307500_10076626	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300031562\|Ga0310886_11061407	Not Available	521	Open in IMG/M
3300031572\|Ga0318515_10285749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	884	Open in IMG/M
3300031573\|Ga0310915_10255064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1234	Open in IMG/M
3300031668\|Ga0318542_10364923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	743	Open in IMG/M
3300031708\|Ga0310686_108637621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	527	Open in IMG/M
3300031724\|Ga0318500_10266629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	833	Open in IMG/M
3300031736\|Ga0318501_10540034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031751\|Ga0318494_10530354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300031769\|Ga0318526_10380585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300031771\|Ga0318546_10542020	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300031780\|Ga0318508_1211142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300031781\|Ga0318547_10080700	All Organisms → cellular organisms → Bacteria → Proteobacteria	1821	Open in IMG/M
3300031797\|Ga0318550_10148754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1124	Open in IMG/M
3300031832\|Ga0318499_10147742	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300031890\|Ga0306925_11685812	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300031893\|Ga0318536_10009792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4062	Open in IMG/M
3300031893\|Ga0318536_10700156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300031894\|Ga0318522_10018951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2207	Open in IMG/M
3300031896\|Ga0318551_10900154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300031912\|Ga0306921_11832805	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300031945\|Ga0310913_10288768	Not Available	1156	Open in IMG/M
3300031954\|Ga0306926_11318864	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300031981\|Ga0318531_10562475	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300032013\|Ga0310906_10523290	Not Available	806	Open in IMG/M
3300032043\|Ga0318556_10512155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300032060\|Ga0318505_10608358	Not Available	514	Open in IMG/M
3300032068\|Ga0318553_10699180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300032160\|Ga0311301_11782569	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300032892\|Ga0335081_10654679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1284	Open in IMG/M
3300034680\|Ga0370541_030270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	649	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.41%
Host-Associated	Host-Associated	8.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.72%
Plants	Host-Associated → Plants	8.59%
Aquatic	Environmental → Aquatic	4.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.69%
Freshwater	Environmental → Aquatic → Freshwater	2.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.34%
Sediment	Environmental → Aquatic → Sediment	1.56%
Roots	Host-Associated → Plants → Roots	1.56%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	9.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.56%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.78%
Sand	Environmental → Terrestrial → Soil → Sand	0.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.78%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.34%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.78%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.78%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.78%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.78%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.12%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.34%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.56%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.56%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.56%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.56%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.78%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.78%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.78%
Switchgrass, Maize And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere	0.78%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.78%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.78%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2044078001	Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL	Host-Associated	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064546

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ZMR_661580	2044078001	Switchgrass, Maize And Miscanthus Rhizosphere	VATQSPYHMEDPAIRREFEAELGREGVASRMNPAWYERAPTEGEDLPPNM
JGI12053J15887_105908311	3300001661	Forest Soil	EDPAVRKEFEEALKREGVASRMNREFYQRPPAEGEAVMDDVM*
Ga0008090_101134451	3300005363	Tropical Rainforest Soil	EDPAIRTEFEAALAREGVASRMNPEFYQRPPAAGETVMGDVM*
Ga0070714_1018818141	3300005435	Agricultural Soil	YHQEDPAIRREFSEALAREGVASRMNPEFYERPPGEGEEVMGDVM*
Ga0070732_104159581	3300005542	Surface Soil	DPFIRQEFSETLKREGLANRMNPEFYDRPPAEGEVVIGDVM*
Ga0070764_108592972	3300005712	Soil	IRQEFEAILKREGLPSRMNPEFYERPPGEGEVVMGDVM*
Ga0066903_1000853476	3300005764	Tropical Forest Soil	EFAQALAREGVASRMNPEFYQRPPGAGEEVMGDVM*
Ga0066903_1007035213	3300005764	Tropical Forest Soil	PYHQEDPAIRKEFQAALAKEGVKSRMNPEFYERPPAEGEVVMGDVM*
Ga0066903_1082296832	3300005764	Tropical Forest Soil	SAIPYHQEDPAIRTEFEAALAREGVASRMNPEFYQRPPAEGEVVMGDVM*
Ga0075029_1013296931	3300006052	Watersheds	IPYHQEDPAIRQEFAETLAREGVASRMNPEFYERPPGEGEEVMGDVM*
Ga0075030_1003682373	3300006162	Watersheds	HQEDPAIRQEFGQALARAGVASRMNPEFYQRPPGEGEEVMGDVM*
Ga0066665_114625621	3300006796	Soil	IPYHQEDPAIRKEFEQALKREGVASRMNPEFYQRPPAEGEVVMGDVM*
Ga0075420_1013683922	3300006853	Populus Rhizosphere	MEDPAIRAEFDATLRREGMTSRMKEAWYERPPTEGEDLPPNM*
Ga0073934_107027942	3300006865	Hot Spring Sediment	FEERLAREGVKSRMNPEFYERPPAEGETVMGDVM*
Ga0075435_1006105703	3300007076	Populus Rhizosphere	FTEALNREGVACRMNPEFYERPPAEGEVVMGDVM*
Ga0099829_116686062	3300009038	Vadose Zone Soil	AIPYHQEDPAIRAEFEQALRREGVASRMNPEFYQRPAAEGEVVMGDVM*
Ga0099830_105841281	3300009088	Vadose Zone Soil	AIPYHEEDLAIRREFEGALACEGLVSRMKPEFYQRPPAEGEMVMGDVM*
Ga0099827_102526011	3300009090	Vadose Zone Soil	SAIPYHQEDPAIRKEFEEALKREGVASRMNAEFYQRPPAEGEVVMGDVM*
Ga0075418_119480512	3300009100	Populus Rhizosphere	FEERLAREGVKSRMNPEFYERPPGEGEVVMGDVM*
Ga0066709_1003626761	3300009137	Grasslands Soil	QEDPAIRTKFQKAPAREGVANRKNQEIYQRPPPEGEVVVGDVM*
Ga0114129_120374302	3300009147	Populus Rhizosphere	HQEDPYIRQEFTEALKREGVACRMNPEFYERPPAEGEVVMGDVM*
Ga0126374_110839521	3300009792	Tropical Forest Soil	SAIPYHQEDPAIRTEFEAALAREGVASRMNPEFYQRPPAAGEVVMGDVM*
Ga0126374_113120801	3300009792	Tropical Forest Soil	QEDPAIRKEFEQALAREGVASRMNPEFYERPPGEGEVVMGDVM*
Ga0126311_100858751	3300010045	Serpentine Soil	HLEDPAVRAEYEERLKREGVTPRMNPEFYKRPPGEGEEVVGDVM*
Ga0126376_108046962	3300010359	Tropical Forest Soil	FIEALKREGIDCRMNPEFYERPPAEGEVVMGDVM*
Ga0126376_117223382	3300010359	Tropical Forest Soil	PYHQEDPAIRKEFQEALKKEGIESRMNPEFYERPPAEGEVVMGDVM*
Ga0126372_112367851	3300010360	Tropical Forest Soil	AIPYHQEDPAIRAEFQAALAREGVASRMNPEFYERPQGEGEVVIGDVM*
Ga0126377_112100301	3300010362	Tropical Forest Soil	HMEDPAIRKEFEATLAREGVASRMNPAFYERPPAEGEEVPPDM*
Ga0126377_114898961	3300010362	Tropical Forest Soil	IRKEFTEALKREGIECRMNPEFYERPPAEGEVVMGDVM*
Ga0126377_133835392	3300010362	Tropical Forest Soil	KEFIEALKREGIDCRMNPEFYERPPAEGEVVMGDVM*
Ga0126377_136185662	3300010362	Tropical Forest Soil	HQEDPYIRKEFIEALKREGIECRMNPEFYERPPAEGEVVMGDVM*
Ga0126379_103832181	3300010366	Tropical Forest Soil	SAIPYHQEDPAIREEFVQALAREGVAGRMNPEFYERPPQEGEVVMGDVM*
Ga0126379_121974101	3300010366	Tropical Forest Soil	IRTEFEAALAREGVASRMNPEFYQRPPAAGEVVMGDVM*
Ga0126381_1023378031	3300010376	Tropical Forest Soil	RTEFEAALAREGVASRMNPEFYQRPPAEGEVVMGDVM*
Ga0126381_1029487731	3300010376	Tropical Forest Soil	DPAIRTEFEAALAREGVASRMNPEFYQRPPAAGEVVMGDVM*
Ga0126383_118820312	3300010398	Tropical Forest Soil	KEYEATLKREGVVSRMNPEFYERPPAEGEVVMGDVM*
Ga0126383_121059531	3300010398	Tropical Forest Soil	AIRTEFEAALAREGVASRMNPEFYQRPPAAGEVVMGDVM*
Ga0134121_112046041	3300010401	Terrestrial Soil	IEQALAKEGVATRMNAEFYERPPADGEVVMGDVM*
Ga0134123_117571531	3300010403	Terrestrial Soil	IRQEFTEALKKEGVAGRMNPEFYERPPAEGEVVLGDVM*
Ga0150983_158724683	3300011120	Forest Soil	QEFEATLTREGLPSRMNAEFYARPPNEGEVVMGDVM*
Ga0137388_108358182	3300012189	Vadose Zone Soil	RAEFEQALKREGVASRMNPEFYQRPAAEGEVVMGDVM*
Ga0137388_117342301	3300012189	Vadose Zone Soil	EFEEALKREGVASRMNAEFYQRPPAEGEVVMGDVM*
Ga0137383_107583612	3300012199	Vadose Zone Soil	DPNIRKEFSEVLKKGGIASRMNPEFYERPPAGGEVVMGDVM*
Ga0137362_108029412	3300012205	Vadose Zone Soil	AIPYHQEDPAIRTEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM*
Ga0137376_112068401	3300012208	Vadose Zone Soil	EEFTATLAKEGVQNRMNPEFYERPPADGEDVMGDVM*
Ga0150985_1177731922	3300012212	Avena Fatua Rhizosphere	FEETLAREGVKSRMNPEFYERPPAEGEAVMGDVM*
Ga0137360_117282052	3300012361	Vadose Zone Soil	FEAALARQSVVSRMNPEFYQRPPAEGEVVMGDVM*
Ga0134043_12844071	3300012392	Grasslands Soil	AIRLEFDQTVAQEGVKSRMNPVFYERPPAAGEEVPADM*
Ga0153915_129527382	3300012931	Freshwater Wetlands	AIPYHQEDPAIRKEFFEALAREGVPSRMNPEFYERPPGEGDEVMGDVM*
Ga0164300_102495982	3300012951	Soil	DPAIRKEFEAALAREGVAGRMNPEFYQRPPAGGEVVMGDVM*
Ga0126369_104199812	3300012971	Tropical Forest Soil	DPDIRKEFEAALAREGVASRMNPEFYQRPPAEGEVVMGDVM*
Ga0126369_121226711	3300012971	Tropical Forest Soil	NEFIEALKREGIACRMNPEFYERPPAEGEVVMGDVM*
Ga0164305_111545862	3300012989	Soil	YHQEDPAIRTEFEAALAREGVAGRMNQEFYQRPPAEGDVVMGDVM*
Ga0134079_104172312	3300014166	Grasslands Soil	EFQEALAREGVASRMNKEFYERPPGEGEVVMGDVM*
Ga0181534_107955031	3300014168	Bog	EDPAIRAEFERRLKAEGVASRMNPDFYVGPPAEGAEVPGDAF*
Ga0181526_101087661	3300014200	Bog	QEFEAILKREGLSSRMNPEFYERPPSEGEVVMGDVM*
Ga0163163_133093382	3300014325	Switchgrass Rhizosphere	AIRREFEATLALEGVASRMNPAFYERPPADGEDVPPDM*
Ga0137412_110585161	3300015242	Vadose Zone Soil	IPYHQEDPAIRQEFGEALKSEGVPSRMNPEFYQRPPGEGEDVMGDVM*
Ga0137409_103785001	3300015245	Vadose Zone Soil	NAIPYHMEDPAIRLEFEQTVAQEGVKSRMNPVFYERPPTVGEEIPADM*
Ga0137409_114904911	3300015245	Vadose Zone Soil	HQEDPAIRQEFEATLKREGLPSRMNPEFYARPPGEGDVVMGDVM*
Ga0137403_109659452	3300015264	Vadose Zone Soil	IPYHQEDPAIRAEFQAALAREGVASRMNPEFYQRPPGEGEVVMGDVM*
Ga0182036_116987531	3300016270	Soil	SAIRKEFEAALAPEGVASRMNPEFYQRPPAEGEEVMGDVM
Ga0182032_108843702	3300016357	Soil	PYHQEDPAIRTEFEAALAREGVASRMNPEFYQRPPAEGEEVMGDVM
Ga0190266_105452261	3300017965	Soil	PAIRKQFEERLAREGVTSRMNPEFYERPPADGEAVLGDVM
Ga0187784_104126981	3300018062	Tropical Peatland	QEDPAIRTEFEATLEREGLPSRMNPEFYERPPNEGEVVMGDVM
Ga0190265_113502161	3300018422	Soil	HQEDPAIRAQFTERLAREGVKSRMNPEFYDRPPTEGEAVMGDVM
Ga0193696_10624551	3300020016	Soil	EFEEALKREGVASRMNLEFYQRPLAEGEAVMDDVM
Ga0210401_106486501	3300020583	Soil	YHQEDPAIRQEFEATLKREGLPSRMNPEFYERPPGEGEVVMGDVM
Ga0213874_102316112	3300021377	Plant Roots	DPAIREEFAQALAHEGVASRMNPEFYERPPGEGEEVMGDVM
Ga0210393_109024931	3300021401	Soil	PAIRQEFAETLGREGVASRMNPEFYERPPGEGEEVMGDVM
Ga0210385_103350223	3300021402	Soil	AIGYHQEDPAIRKEFEETLKREGLPSRMKPEFYERPPNEGEVVMGDVM
Ga0210385_107268101	3300021402	Soil	EDPAIRKEFEETLKREGLPSRMNAEFYQRPPNEGEVVMGDVM
Ga0210394_108170661	3300021420	Soil	YYQEDRAIRQEFEAILKREGLPSRMNPEFYERPPGDGEVVMGDVM
Ga0210394_112186072	3300021420	Soil	RQEFEATLKREGLPSRMNPEFYERPPGDGEVVMGDVM
Ga0210410_104839161	3300021479	Soil	SAIPYHQEDPAIRQEFSETLAREGVASRMNPEFYERPPGAGEEVMGDVM
Ga0179591_10760234	3300024347	Vadose Zone Soil	YHQEDPYIREEFTEALKREGIDCRMNPEFYERPPAEGEVVMGDVM
Ga0208850_10788132	3300025457	Arctic Peat Soil	EFEAILKREGLPSRMNPEFYERPPSEGEVVMGDVM
Ga0209483_11665032	3300025862	Arctic Peat Soil	HQEDPAIRAEFDATLKREGLESRMKPEFYERPPAEGDVVMGDVM
Ga0207687_118040591	3300025927	Miscanthus Rhizosphere	PYHQEDPAIRKEFEATLAREGVKSRMNPEFYERPPAEGEAVMGDVM
Ga0207664_115265532	3300025929	Agricultural Soil	IPYHQEDPAIRREFSEALAREGVASRMNPEFYERPPGEGEEVMGDVM
Ga0207670_106862091	3300025936	Switchgrass Rhizosphere	QEDPYIRQEFTEALSREGVACRMNPEFYERPPAEGEVVMGDVM
Ga0207678_103998882	3300026067	Corn Rhizosphere	IRQEFTEALSREGVACRMNPEFYERPPAEGEVVMGDVM
Ga0207641_119661432	3300026088	Switchgrass Rhizosphere	IPYHQEDPYIRQEFTEALSREGVACRMNPEFYERPPAEGEVVMGDVM
Ga0208990_10891553	3300027663	Forest Soil	EDPYIRQEFTEVLKTESIACRMNPEFYERPPADGEDVMGDVM
Ga0209588_11799962	3300027671	Vadose Zone Soil	EDPAIRTEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0209689_11560302	3300027748	Soil	EFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0209590_102671031	3300027882	Vadose Zone Soil	QEDPAIRKEFEEALKREGVASRMNAEFYQRPPAEGEVVMGDVM
Ga0209624_108507041	3300027895	Forest Soil	EDPAIRREFEAILKREGLPSRMNPEFYERPPSEGEVVMGDVM
Ga0209488_100672172	3300027903	Vadose Zone Soil	IPYHQEDPAIRKEFGETLAREGIAGRMNPEFYQRPPGEGEDVLGDVM
Ga0209488_102000181	3300027903	Vadose Zone Soil	YHMEDPAIRQEFEATLALQGVASRMNPAFYERPPADGEEVPADM
Ga0209853_11488352	3300027961	Groundwater Sand	IRKEFTEALNREGVGCRMNPEFYERPPAEGEVVMGDVM
Ga0307320_100619542	3300028771	Soil	EFEEALKREGVASRMNRKFYQRPPAEGEAVMGDVM
Ga0307290_100237881	3300028791	Soil	EDPAVRKEFEEALKREGVASRMNREFYQRPPAEGEAVMGDVM
Ga0307287_100607532	3300028796	Soil	HQEDPAVRKEFEEALKREGVASRMNLEFYQRPLAEGEAVMDDVM
Ga0307308_104045443	3300028884	Soil	YHQEDPAVRKEFEEALKREGVASRMNREFYQRPPAEGEAVMDDVM
Ga0308309_108213051	3300028906	Soil	QEDPAIRQEFSETLAREGVASRMNPEFYERPPGAGEEVMGDVM
Ga0308178_10781712	3300030990	Soil	DPAVRKEFEEALKREGVASRMNLEFYQRPLAEGEAVMDDVM
Ga0307500_100766261	3300031198	Soil	KEFTEALKREGIDCRMNPEFYERPPAEGEEVMGDVM
Ga0310886_110614072	3300031562	Soil	DPAIRAEFDATLRKEGVASRMNPAFYERPPADGEDVPPDM
Ga0318515_102857491	3300031572	Soil	TEFEAALAREGVASRMNPEFYQRPPAAGEVVMGDVM
Ga0310915_102550641	3300031573	Soil	AIRREFEAALEREGVASRMNPEFYQRPPAEGEVVMGDVM
Ga0318542_103649231	3300031668	Soil	TEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0310686_1086376211	3300031708	Soil	HQEDPAIRKEFEATLAGEGLPSRMKPEFYQRPPTEGEVVMGDVM
Ga0318500_102666292	3300031724	Soil	AIPYHQEDPAIRREFEAALEREGVASRMNPEFYQRPPAEGEVVMGDVM
Ga0318501_105400342	3300031736	Soil	AIPYHQEDPAIRTEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0318494_105303542	3300031751	Soil	IPYHQEDPAIRKEFEAALKREGVASRMNLEFYERPPAEGEVVMGDVM
Ga0318526_103805851	3300031769	Soil	AIRTEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0318546_105420202	3300031771	Soil	IPYHQEDPAIREEFGQALAHEGVASRMNAEFYERPPQEGEVVMGDVM
Ga0318508_12111422	3300031780	Soil	RKEFEAALAREGVASRMNAEFYQRPPAAGEMVMGDVM
Ga0318547_100807003	3300031781	Soil	EFEAALAREGVASRMNAEFYQRPPAAGEMVMGDVM
Ga0318550_101487541	3300031797	Soil	GYHQEDAAIRKEFEATLAREGLASRMKPEFYERPPNEGEVVMGDVM
Ga0318499_101477421	3300031832	Soil	SAIPYHQEDPSIRAEFVQALAHEGVASRMNAEFYERPPQEGEVVMGDVM
Ga0306925_116858121	3300031890	Soil	IPYHQEDPAIRAEFGEALAHEGVASRMNAEFYERPPQEGEVVMGDVM
Ga0318536_100097924	3300031893	Soil	HQEDPAIRREFEAALEREGVASRMNPEFYQRPPAEGEVVMGDVM
Ga0318536_107001562	3300031893	Soil	AIRTEFEAALAREGVASRMNPEFYQRPPAAGEVVMGDVM
Ga0318522_100189513	3300031894	Soil	IRKEFEAALAREGVASRMNPEFYQRPPAEGEVVMGDVM
Ga0318551_109001542	3300031896	Soil	PAIRTEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0306921_118328051	3300031912	Soil	AIRAEFVQALAHEGVASRMNAEFYERPPQEGEVVMGDVM
Ga0310913_102887681	3300031945	Soil	EFVQALAHEGVASRMNAEFYERPPQEGEVVMGDVM
Ga0306926_113188641	3300031954	Soil	HQEDPYIRKEFSETLNKEGLQNRMNAEFYERPPAEGEMVMGDVM
Ga0318531_105624751	3300031981	Soil	RKEFAETLGREGVSSRMNPEFYERPPAEGEVVMGDVM
Ga0310906_105232902	3300032013	Soil	NAIPYHMEDPAIRAEFDATLRKEGVASRMNPAFYERPPADGEDVPPDM
Ga0318556_105121552	3300032043	Soil	DPAIRTEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0318505_106083581	3300032060	Soil	SAIGYHQEDAAIRKEFEATLAREGLASRMKPEFYERPPNEGEVVMGDVM
Ga0318553_106991802	3300032068	Soil	HQEDPAIRTEFEAALAREGVAGRMNPEFYQRPPAEGEVVMGDVM
Ga0311301_117825691	3300032160	Peatlands Soil	QDDPAIRQEFEAILKREGLPSRMNPEFYERPPSEGEVVMGDVM
Ga0335081_106546793	3300032892	Soil	IGYHQEDPAIRKEFEATLKREGLPSRMNPEFYERPPAEGEVVMGDVM
Ga0370541_030270_521_649	3300034680	Soil	EDPYIREEFTEALKREGIDCRMNPEFYERPPAEGEVVMGDVM

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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